Psyllid ID: psy6612
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | 2.2.26 [Sep-21-2011] | |||||||
| Q8T674 | 730 | ABC transporter G family | yes | N/A | 0.745 | 0.297 | 0.404 | 8e-40 | |
| Q55EH8 | 701 | ABC transporter G family | no | N/A | 0.742 | 0.308 | 0.373 | 1e-37 | |
| Q39GT7 | 304 | Nod factor export ATP-bin | yes | N/A | 0.701 | 0.671 | 0.359 | 1e-32 | |
| Q1LKJ2 | 303 | Nod factor export ATP-bin | yes | N/A | 0.628 | 0.603 | 0.401 | 1e-31 | |
| Q8XXY9 | 321 | Nod factor export ATP-bin | yes | N/A | 0.639 | 0.579 | 0.369 | 4e-31 | |
| P72335 | 304 | Nod factor export ATP-bin | N/A | N/A | 0.649 | 0.621 | 0.363 | 4e-31 | |
| Q1BWI2 | 304 | Nod factor export ATP-bin | yes | N/A | 0.701 | 0.671 | 0.350 | 7e-31 | |
| Q8GNH6 | 335 | Nod factor export ATP-bin | yes | N/A | 0.673 | 0.585 | 0.373 | 6e-30 | |
| Q8KLG1 | 316 | Nod factor export ATP-bin | yes | N/A | 0.735 | 0.677 | 0.325 | 7e-30 | |
| P55476 | 343 | Nod factor export ATP-bin | yes | N/A | 0.639 | 0.542 | 0.364 | 8e-30 |
| >sp|Q8T674|ABCGK_DICDI ABC transporter G family member 20 OS=Dictyostelium discoideum GN=abcG20 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 164 bits (414), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 143/230 (62%), Gaps = 13/230 (5%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K ++++ + + GN V+ LNL + I L+G SG GKTT+L I+GR D+G +
Sbjct: 12 KLAISLKNVCRGYGNTKVIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRLIPDSGEV 71
Query: 77 KLSFRQISDIG--------YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+ ++ DIG + PQE AL+ +L++ T ++ + + D+ E++ EI+K
Sbjct: 72 LVFGKRPHDIGGVPGSICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKKNEIIK 131
Query: 129 LLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
LL+LP + VG LSGGQ++R+S AV+LLH+PKLLILDEPTVG+D ++ IW L+ +
Sbjct: 132 LLDLPQINSRSVGLLSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSL 191
Query: 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
A +G TIIITTHYI EA G+ N+ L+RD G+++ + L+E E
Sbjct: 192 ANSGVTIIITTHYINEAVGSDNVFLLRD----GKILENGAPNYLIERYES 237
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q55EH8|ABCGN_DICDI ABC transporter G family member 23 OS=Dictyostelium discoideum GN=abcG23 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 14/230 (6%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + + + GN V++ LN + + I L+G SG GKTT+L I+G+ D G +++
Sbjct: 7 INLNNVSRSYGNVKVIEKLNFTINKGTINSLIGSSGSGKTTILKTILGKLKQDDGIVQVF 66
Query: 80 FRQI---------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
++ S +GY PQ++ L+ E++I ET ++ + M D+ + ++++L
Sbjct: 67 GKEPCGKGSEIPGSSVGYAPQDVCLYNEITIEETLSFFASIHRMPKDEYIKKRDSLVEIL 126
Query: 131 ELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
ELP KI+ LSGGQQRR+S A +L+H+PKLLILDEPTVG+ P++S IW+ L + N
Sbjct: 127 ELPSLSKIISELSGGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWEHLIFLTKN 186
Query: 191 -GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239
G TIIITTHY++E + NI L+R+ GR++ L+ E +L
Sbjct: 187 FGVTIIITTHYLQECRSCDNIFLLRN----GRILESGPPNYLLSKYECSL 232
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q39GT7|NODI_BURS3 Nod factor export ATP-binding protein I OS=Burkholderia sp. (strain 383) GN=nodI PE=3 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 122/214 (57%), Gaps = 10/214 (4%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K+ G+ +V+ GL+ V + YGLLGP+G GKTT L ++G DAGTI L +
Sbjct: 13 KRFGDKLVVNGLSFTVQAGECYGLLGPNGAGKTTTLKMLLGLTHPDAGTISLCGEPVPSR 72
Query: 86 -------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PAKK 137
+G +PQ L + ++RE +G F M+ K +L+ +L A
Sbjct: 73 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGMSAQAAHALVKPLLEFAKLENKADA 132
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
VG LSGG +RR++ A +L+++P +L+LDEPT GLDP ++W+RL+ + GKTI+IT
Sbjct: 133 KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILIT 192
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230
TH++EEA+ + ++ + + I H ++ES
Sbjct: 193 THFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 226
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia sp. (strain 383) (taxid: 269483) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1LKJ2|NODI_RALME Nod factor export ATP-binding protein I OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 113/192 (58%), Gaps = 9/192 (4%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K G+HVV+ L+L V + +GLLGP+G GKTT L ++G T +GT+ L I
Sbjct: 12 KLYGDHVVVDNLDLEVQPGQCFGLLGPNGAGKTTTLRMLLGLTTPASGTLMLCGEPIPQR 71
Query: 86 -------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK 137
+G +PQ L + S+ E R +G F ++ QI R ++L+ L A
Sbjct: 72 APQARMRVGVVPQFDNLDPDFSVIENLRIFGRYFGLSSAQIAERVPKLLEFARLESRADA 131
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
V LSGG +RR++ A +L+++P LLI+DEPT GLDP +IW+RLK + GKTI++T
Sbjct: 132 QVRDLSGGMRRRLTVARALINDPDLLIMDEPTTGLDPQARHLIWERLKSLLSAGKTILLT 191
Query: 198 THYIEEAKGAHN 209
TH++EEA+ N
Sbjct: 192 THFMEEAERLCN 203
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q8XXY9|NODI_RALSO Nod factor export ATP-binding protein I OS=Ralstonia solanacearum (strain GMI1000) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 115/195 (58%), Gaps = 9/195 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL- 78
++V K+ G V+ GL+ +V + +GLLGP+G GKTT L ++G DAGT++L
Sbjct: 17 LSVEGLRKRYGEQTVVDGLSFSVRRGQCFGLLGPNGAGKTTTLRMLLGMTMPDAGTLQLC 76
Query: 79 -------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
+ R +G +PQ L + ++ E + +G F + I R +L+
Sbjct: 77 GETIPGHAHRARMRVGVVPQFDNLDPDFTVSENLQIFGRYFGLPAATIRKRMPGLLEFAR 136
Query: 132 LP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
L A V ALSGG +RR++ A SL+++P +L++DEPT GLDP +IW+RL+ + +
Sbjct: 137 LEQKADAPVRALSGGMRRRLTVARSLINDPDVLVMDEPTTGLDPQARHLIWERLRSLLAS 196
Query: 191 GKTIIITTHYIEEAK 205
GKTI++TTH++EEA+
Sbjct: 197 GKTILLTTHFMEEAE 211
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P72335|NODI_RHIS3 Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain N33) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 115/198 (58%), Gaps = 9/198 (4%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K ++ + K G+ +V+ GL+ V + +GLLGP+G GK+T+ ++G DAG I
Sbjct: 3 KVAIDLAGVKKSFGDKLVVNGLSFTVASGECFGLLGPNGAGKSTIARMLLGMTVPDAGKI 62
Query: 77 KLSFRQIS--------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+ + IG +PQ L E ++RE +G F M+ +I+ +L+
Sbjct: 63 TVLGEPVGARSRLARKSIGVVPQFDNLDQEFTVRENLLVFGRYFGMSTRKIKEVIPSLLE 122
Query: 129 LLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L A VG LSGG +RR++ A +L+++P+LL++DEPT GLDP +IW+RL+ +
Sbjct: 123 FARLESKADARVGELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRFL 182
Query: 188 ALNGKTIIITTHYIEEAK 205
GKTII+TTH++EEA+
Sbjct: 183 LARGKTIILTTHFMEEAE 200
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Rhizobium sp. (strain N33) (taxid: 103798) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1BWI2|NODI_BURCA Nod factor export ATP-binding protein I OS=Burkholderia cenocepacia (strain AU 1054) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 121/214 (56%), Gaps = 10/214 (4%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K+ G+ +V+ GL+ +V + YGLLGP+G GKTT L ++G DAGTI L +
Sbjct: 13 KRYGDKLVVNGLSFSVKVGECYGLLGPNGAGKTTTLKMLLGLAHPDAGTISLCGEPVPSR 72
Query: 86 -------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PAKK 137
+G +PQ L + ++RE + F M+ +L+ +L A
Sbjct: 73 ARHARQRVGVVPQFDNLDPDFTVRENLLVFSRYFGMSAQAARALVAPLLEFAKLENKADA 132
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
VG LSGG +RR++ A +L+++P +L+LDEPT GLDP ++W+RL+ + GKTI+IT
Sbjct: 133 KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILIT 192
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230
TH++EEA+ + ++ + + I H ++ES
Sbjct: 193 THFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 226
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Burkholderia cenocepacia (strain AU 1054) (taxid: 331271) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q8GNH6|NODI_RHIML Nod factor export ATP-binding protein I OS=Rhizobium meliloti GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 119/214 (55%), Gaps = 18/214 (8%)
Query: 5 SIKRIDPEIIEVKHSVAV--TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
S+K + P I SVA+ S K G+ V+ GL+ V + +GLLGP+G GK+T+
Sbjct: 23 SVKTLRPHAIP---SVAIDLASVTKSYGDKPVVDGLSFTVAAGECFGLLGPNGAGKSTIT 79
Query: 63 NCIVGRNTLDAGTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDM 114
I+G T G I + + IG +PQ L E ++RE +G F M
Sbjct: 80 RMILGMTTPATGVITVLGVPVPSRARLARMGIGVVPQFDNLDSEFTVRENLLVFGRYFRM 139
Query: 115 TDDQIETRSKEILKLLELPPAKKI---VGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
+ +IE +L+ L K+ V LSGG +RR++ A +L+++P+LLILDEPT G
Sbjct: 140 STREIEAVIPSLLEFARL--ENKVDARVSDLSGGMKRRLTLARALINDPQLLILDEPTTG 197
Query: 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
LDP +IW+RL+ + GKTI++TTH +EEA+
Sbjct: 198 LDPHARHLIWERLRSLLARGKTILLTTHIMEEAE 231
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Rhizobium meliloti (taxid: 382) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q8KLG1|NODI_RHIEC Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 120/224 (53%), Gaps = 10/224 (4%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
++ + K G+ V+ L+ V + +GLLGP+G GK+T+ I+G DAG I +
Sbjct: 17 AIDFSDVSKTYGDKAVVSALSFRVSPGECFGLLGPNGAGKSTIARMILGMTAPDAGKITV 76
Query: 79 SFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ IG +PQ L E ++RE Y F M ++E +L+
Sbjct: 77 LGVPVPAQARLARKGIGVVPQFDNLEPEFTVRENLLVYSRYFGMNTRKVEAVMSSLLEFA 136
Query: 131 EL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L V LSGG +RR++ A +L+++P+LL++DEPT GLDP +IW+RL+ +
Sbjct: 137 RLESKVNARVSELSGGMKRRLTLARALINDPQLLVMDEPTTGLDPHARHLIWERLRSLLT 196
Query: 190 NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232
GKTII+TTH++EEA+ + ++ + I HD+++ L+
Sbjct: 197 RGKTIILTTHFMEEAERLCDRLCVLEGGRSIAEGRPHDLIDELI 240
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P55476|NODI_RHISN Nod factor export ATP-binding protein I OS=Rhizobium sp. (strain NGR234) GN=nodI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 111/195 (56%), Gaps = 9/195 (4%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
++ +T+ K G+ VV+ L+ + + +GLLGP+G GK+T+ ++G D GTI +
Sbjct: 44 AIELTNVSKSYGDKVVVDQLSFTITSGECFGLLGPNGAGKSTVSRLVLGLAPPDEGTITV 103
Query: 79 SFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ S IG +PQ L E + RE +G F + ++E +L
Sbjct: 104 LGEPVPARARLARSRIGVVPQFDTLDREFTARENLLVFGRYFGLHTRELEEAIPPLLDFA 163
Query: 131 ELPPAKKI-VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L + V LSGG QRR++ A +L+++P+LLILDEPT GLDP +IW+RL+ +
Sbjct: 164 RLESKADVPVAQLSGGMQRRLTLACALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 223
Query: 190 NGKTIIITTHYIEEA 204
GKTI++TTH++EEA
Sbjct: 224 LGKTILLTTHFMEEA 238
|
Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit is responsible for energy coupling to the transport system. Rhizobium sp. (strain NGR234) (taxid: 394) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | ||||||
| 328701300 | 703 | PREDICTED: ABC transporter G family memb | 0.759 | 0.314 | 0.596 | 6e-69 | |
| 193661951 | 693 | PREDICTED: ABC transporter G family memb | 0.676 | 0.284 | 0.643 | 1e-67 | |
| 193664711 | 686 | PREDICTED: ABC transporter G family memb | 0.821 | 0.348 | 0.497 | 5e-61 | |
| 328725729 | 265 | PREDICTED: ABC transporter G family memb | 0.786 | 0.864 | 0.527 | 7e-59 | |
| 328702063 | 685 | PREDICTED: ABC transporter G family memb | 0.769 | 0.327 | 0.538 | 7e-59 | |
| 328712982 | 696 | PREDICTED: ABC transporter G family memb | 0.756 | 0.316 | 0.550 | 1e-58 | |
| 350397026 | 767 | PREDICTED: ABC transporter G family memb | 0.752 | 0.285 | 0.504 | 6e-58 | |
| 340725864 | 767 | PREDICTED: ABC transporter G family memb | 0.749 | 0.284 | 0.506 | 9e-58 | |
| 332373720 | 761 | unknown [Dendroctonus ponderosae] | 0.886 | 0.339 | 0.460 | 2e-57 | |
| 193620315 | 760 | PREDICTED: ABC transporter G family memb | 0.800 | 0.306 | 0.488 | 3e-57 |
| >gi|328701300|ref|XP_001945365.2| PREDICTED: ABC transporter G family member 23-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 133/223 (59%), Positives = 168/223 (75%), Gaps = 2/223 (0%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+V V SAYK+ G +LK LNL +P KIYGLLGPSGCGKTTLL+CIVGR LD+G IKL
Sbjct: 28 AVVVRSAYKQYGQTAILKDLNLTIPTGKIYGLLGPSGCGKTTLLSCIVGRLHLDSGEIKL 87
Query: 79 SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI 138
+ ISDIGYMPQELALH ELSI+ETF YYGY+F++++D IETR +E+ +LL+LP
Sbjct: 88 KGKHISDIGYMPQELALHNELSIKETFTYYGYIFNLSNDVIETRGRELKELLKLPSYSLS 147
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIIT 197
+ +SGGQQRR+S AV++LH+PKLLILDEPTVGLDP++SQ IW+ L ++ N GKT+IIT
Sbjct: 148 LNEISGGQQRRVSLAVAMLHDPKLLILDEPTVGLDPLISQSIWELLLDLTSNEGKTVIIT 207
Query: 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL-VEALEDAL 239
THYIEEAK + IGLMR + +++ S LE+A
Sbjct: 208 THYIEEAKQSQMIGLMRKGTLLSEATPTELLTSCNCSYLEEAF 250
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193661951|ref|XP_001942931.1| PREDICTED: ABC transporter G family member 23-like isoform 1 [Acyrthosiphon pisum] gi|328718908|ref|XP_003246617.1| PREDICTED: ABC transporter G family member 23-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 128/199 (64%), Positives = 156/199 (78%), Gaps = 2/199 (1%)
Query: 19 SVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
++ V AYK+ H VVL+GLN+ VPE IYGLLGPSGCGKTTLL+C+VGR +DAG I+
Sbjct: 19 AIMVRGAYKRYNPHSVVLRGLNMTVPEGTIYGLLGPSGCGKTTLLSCMVGRCQIDAGDIQ 78
Query: 78 LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK 137
+ R S+IGYMPQELAL+ E SI+ET YYG +F M+ QIETR+ E+LK LELP
Sbjct: 79 VKARTKSNIGYMPQELALYQEFSIKETMTYYGRLFGMSHKQIETRTYELLKFLELPHENN 138
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG-KTIII 196
IV LSGGQ+RR+SFAV+LLH+P+LLILDEPTVG+DP+LS IW L +M NG KT++I
Sbjct: 139 IVSRLSGGQERRVSFAVALLHDPQLLILDEPTVGVDPVLSASIWQHLLDMTANGNKTVVI 198
Query: 197 TTHYIEEAKGAHNIGLMRD 215
TTHYIEEA+ AH IGLMRD
Sbjct: 199 TTHYIEEARQAHTIGLMRD 217
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193664711|ref|XP_001950287.1| PREDICTED: ABC transporter G family member 23-like isoform 1 [Acyrthosiphon pisum] gi|328718609|ref|XP_003246529.1| PREDICTED: ABC transporter G family member 23-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 1 MRKISIKRIDPEIIEVKHSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKT 59
M I++ + ++ +V +T AYK + VVL G N+NV + IYGLLGPSGCGKT
Sbjct: 1 MEDINLDHVRETSNDINLAVKITDAYKAYNSAAVVLNGFNMNVEKGTIYGLLGPSGCGKT 60
Query: 60 TLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
TLL+CI+GR LD+G I+LS ++ +IGYMPQ+LAL+ E +I ETF Y+G +++M+ + I
Sbjct: 61 TLLSCIIGRGRLDSGHIQLSVKKKKEIGYMPQDLALYDEFNILETFHYFGSLYEMSYEDI 120
Query: 120 ETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
+ ++++ L+E+PPAK G++SGGQQRR S +LLH+P LLILDEPTVGLDPI+S
Sbjct: 121 IDKGEKLINLMEMPPAKTQFGSMSGGQQRRFSLCTALLHDPSLLILDEPTVGLDPIISAS 180
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL-VEALEDA 238
IW+ L+++ GKTIIITTHYIEEA+ A+ IGLMR + +I+ S + LE A
Sbjct: 181 IWEYLQDLTNRGKTIIITTHYIEEARLANTIGLMRKGILLSEAPPLEIMASCNADTLESA 240
Query: 239 L 239
Sbjct: 241 F 241
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328725729|ref|XP_003248594.1| PREDICTED: ABC transporter G family member 23-like, partial [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/239 (52%), Positives = 161/239 (67%), Gaps = 10/239 (4%)
Query: 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
SV V SA+K+ + +VLKG++L V N IYGLLGPSGCGKTTLLNCIVGR LD G I
Sbjct: 15 SVEVRSAFKRYNKSAMVLKGVSLTVRRNTIYGLLGPSGCGKTTLLNCIVGRTKLDNGVIN 74
Query: 78 LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK 137
L I DIGYMPQ+L L LS+ E F Y+G +F + ++I +R K L +LP K
Sbjct: 75 LESNVIDDIGYMPQDLCLDPLLSVEEIFFYFGTIFGRSRNEIISRYKYFNALFDLPERKM 134
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
++ LSGGQQRR+S AV+LLHNP LLILDEPTVGLDPILS+ IW L +++ GKTIIIT
Sbjct: 135 LINNLSGGQQRRVSLAVALLHNPTLLILDEPTVGLDPILSEKIWLHLSDLSSEGKTIIIT 194
Query: 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA-----LEDALRHGNVINKVDLV 251
THYIEEA+ AH +G+MR G ++ D ++L++ LED VI+ ++
Sbjct: 195 THYIEEARRAHTVGMMRS----GIILSEDAPDNLLKCYGCSTLEDVFLKLCVIDTSKVI 249
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702063|ref|XP_001946849.2| PREDICTED: ABC transporter G family member 20-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/234 (53%), Positives = 159/234 (67%), Gaps = 10/234 (4%)
Query: 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
SV V SA+K+ + +VLKG++L V N IYGLLGPSGCGKTTLLNCIVGR LD G I
Sbjct: 15 SVEVRSAFKRYNKSAMVLKGVSLTVRRNTIYGLLGPSGCGKTTLLNCIVGRTKLDNGVIN 74
Query: 78 LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK 137
L I DIGYMPQ+L L LS+ E F Y+G +F + ++I +R K L +LP K
Sbjct: 75 LESNVIDDIGYMPQDLCLDPLLSVEEIFFYFGTIFGRSRNEIISRYKYFNALFDLPKRKM 134
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
++ LSGGQQRR+S AV+LLHNP LLILDEPTVGLDPILS+ IW L +++ GKTIIIT
Sbjct: 135 LINNLSGGQQRRVSLAVALLHNPTLLILDEPTVGLDPILSEKIWLHLSDLSSEGKTIIIT 194
Query: 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA-----LEDALRHGNVIN 246
THYIEEA+ AH +G+MR G ++ D ++L++ LED VI+
Sbjct: 195 THYIEEARRAHTVGMMRS----GIILSEDAPDNLLKCYGCSTLEDVFLKLCVID 244
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328712982|ref|XP_003244962.1| PREDICTED: ABC transporter G family member 20-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 162/229 (70%), Gaps = 9/229 (3%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
D IE++ +V + Y + N+VV +GLN+ VP+ KIYGLLGPSGCGKTTLL+CIVGR+
Sbjct: 19 DEVCIEIRDAVKI---YDR--NNVVFRGLNMTVPKGKIYGLLGPSGCGKTTLLSCIVGRS 73
Query: 70 TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
LD+G I + + DIGYMPQ+L LH L+I +T+++YG M +M +QI R+KE+ L
Sbjct: 74 ELDSGHIMVKAFKREDIGYMPQDLNLHEHLTIAQTYKFYGVMLNMDKEQIAKRTKELSLL 133
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
LELP ++V LSGGQQRR+S V+LLHNP +LILDEPTVGLDP+LS IW+ L A
Sbjct: 134 LELPSDNRLVETLSGGQQRRVSLGVALLHNPNILILDEPTVGLDPVLSHSIWNHLVSFAE 193
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
GKTIIITTHYIEEA+ AH IG+MR G L+ D E+L+ A
Sbjct: 194 RGKTIIITTHYIEEARQAHTIGMMRG----GILLAEDSPETLIARCNSA 238
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350397026|ref|XP_003484744.1| PREDICTED: ABC transporter G family member 23-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 168/242 (69%), Gaps = 23/242 (9%)
Query: 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ +V+V +A+K GN + +L+ LN+ VP+ IYGLLG SGCGKTTLL+CIVGR L+
Sbjct: 32 QQAVSVRNAFKSYGNSKNPNHILQNLNMTVPKGSIYGLLGASGCGKTTLLSCIVGRRKLN 91
Query: 73 AGTI---------KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
AG I K S +GYMPQE+AL+GE SIRET Y+G++F M ++I+ R
Sbjct: 92 AGEIWVLGGKPGTKGSGVPGRRVGYMPQEIALYGEFSIRETMMYFGWIFGMCTEEIQERL 151
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ +L+ L+LP ++V LSGGQQRR+SFAV+L+H+P+LLILDEPTVG+DP+L Q IW+
Sbjct: 152 RFLLQFLDLPTQNRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH 211
Query: 184 LKEMALNG-KTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV-----EALED 237
L ++ +G KT+IITTHYIEEA+ AH IGLMR GRL+ + +L+ +LE+
Sbjct: 212 LVQITKDGFKTVIITTHYIEEARQAHTIGLMRS----GRLLAEESPRALLTMFNCTSLEE 267
Query: 238 AL 239
A
Sbjct: 268 AF 269
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340725864|ref|XP_003401285.1| PREDICTED: ABC transporter G family member 20-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 229 bits (585), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/243 (50%), Positives = 168/243 (69%), Gaps = 25/243 (10%)
Query: 17 KHSVAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+ +V+V +A+K G NH+ L+ LN+ VP+ IYGLLG SGCGKTTLL+CIVGR L
Sbjct: 32 QQAVSVRNAFKSYGSSKNPNHI-LQNLNMTVPKGSIYGLLGASGCGKTTLLSCIVGRRKL 90
Query: 72 DAGTI---------KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
+AG I K S +GYMPQE+AL+GE SIRET Y+G++F M ++I+ R
Sbjct: 91 NAGEIWVLGGKPGTKGSGVPGRRVGYMPQEIALYGEFSIRETMMYFGWIFGMCTEEIQER 150
Query: 123 SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
+ +L+ L+LP ++V LSGGQQRR+SFAV+L+H+P+LLILDEPTVG+DP+L Q IW+
Sbjct: 151 LRFLLQFLDLPTQNRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWN 210
Query: 183 RLKEMALNG-KTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV-----EALE 236
L ++ +G KT+IITTHYIEEA+ AH IGLMR GRL+ + +L+ +LE
Sbjct: 211 HLVQITKDGFKTVIITTHYIEEARQAHTIGLMRS----GRLLAEESPRALLTMFNCTSLE 266
Query: 237 DAL 239
+A
Sbjct: 267 EAF 269
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332373720|gb|AEE62001.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/278 (46%), Positives = 180/278 (64%), Gaps = 20/278 (7%)
Query: 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ +V V A+KK G+ +++L GLN+ VP+ IYGLLG SGCGKTTLLNCIVGR L+
Sbjct: 28 QQAVCVRRAHKKYGSKSQPNIILDGLNMTVPKGCIYGLLGASGCGKTTLLNCIVGRKRLN 87
Query: 73 AGTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
+G I + Q IGYMPQE+AL+GE SIRET +Y+G++ D++ +Q+E R
Sbjct: 88 SGEIWVLGGQPGSKGSGVPGPRIGYMPQEIALYGEFSIRETLKYFGWVSDLSTEQVEARL 147
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ ++ LL LP + V LSGGQQRR+S A +L+H+P+LLILDEPTVG+DP+L Q IW
Sbjct: 148 EFLVNLLMLPDPDRQVKCLSGGQQRRVSLAAALVHDPELLILDEPTVGVDPLLRQNIWGH 207
Query: 184 LKEMALNG-KTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD-IVESLVEALEDALRH 241
L E+ +G KT+IITTHYI+EA+ AH IGLMR ++ IV+ E+LED
Sbjct: 208 LVEITKHGRKTVIITTHYIDEARQAHLIGLMRGGYFLAEESPEQLIVQFGAESLEDVFLK 267
Query: 242 GNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEG 279
+VI + G+ +L + T ++ + ++NEG
Sbjct: 268 LSVIQNM----GKRRRSSIL-QSVTDAIPIPAGSVNEG 300
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193620315|ref|XP_001945213.1| PREDICTED: ABC transporter G family member 23-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 124/254 (48%), Positives = 166/254 (65%), Gaps = 21/254 (8%)
Query: 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ +V V AYKK G HV+L GLN+ VP+ IYGLLG SGCGKTTLL+CIVGR L+
Sbjct: 28 QQAVCVRRAYKKYGQSSNPHVILDGLNMTVPKGCIYGLLGASGCGKTTLLSCIVGRRRLN 87
Query: 73 AGTIKL---------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
AG I + S IGYMPQE+AL+GE +IRET +++G + MT Q++ +
Sbjct: 88 AGEIWVLGGKPGSAGSGVPGPRIGYMPQEIALYGEFTIRETMQFFGMVNGMTPKQVDDKI 147
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ +LK L LP A + V LSGGQQRR+SFA +LLHNP+LLILDEPTVG+DP+L Q IWD
Sbjct: 148 EFLLKFLMLPSASRPVKNLSGGQQRRVSFAAALLHNPELLILDEPTVGVDPVLRQGIWDH 207
Query: 184 LKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL-VEALEDALRH 241
L + + G TII+TTHYI+E + AH IGLMR +++ +++ ++LED
Sbjct: 208 LVHLTKDGGTTIIVTTHYIDETRQAHMIGLMRGGKFLAEESPTSLLQKYNCQSLED---- 263
Query: 242 GNVINKVDLVDGRG 255
V K+ ++ RG
Sbjct: 264 --VFLKLSVIQNRG 275
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 291 | ||||||
| FB|FBgn0053970 | 777 | CG33970 [Drosophila melanogast | 0.900 | 0.337 | 0.469 | 5.5e-54 | |
| FB|FBgn0039594 | 808 | CG9990 [Drosophila melanogaste | 0.680 | 0.245 | 0.547 | 1e-51 | |
| FB|FBgn0031734 | 711 | CG11147 [Drosophila melanogast | 0.804 | 0.329 | 0.448 | 6.7e-49 | |
| ZFIN|ZDB-GENE-050517-42 | 705 | abch1 "ATP-binding cassette, s | 0.663 | 0.273 | 0.463 | 1.5e-42 | |
| DICTYBASE|DDB_G0267430 | 730 | abcG20 "ABC transporter G fami | 0.742 | 0.295 | 0.406 | 1.4e-38 | |
| DICTYBASE|DDB_G0269026 | 701 | abcG23 "ABC transporter G fami | 0.862 | 0.358 | 0.340 | 1.1e-36 | |
| TIGR_CMR|BA_2541 | 222 | BA_2541 "ABC transporter, ATP- | 0.666 | 0.873 | 0.385 | 1.4e-32 | |
| TIGR_CMR|CHY_0872 | 261 | CHY_0872 "ABC transporter, ATP | 0.663 | 0.739 | 0.330 | 3.8e-30 | |
| UNIPROTKB|O33189 | 255 | Rv1687c "PROBABLE CONSERVED AT | 0.756 | 0.862 | 0.320 | 1e-29 | |
| TIGR_CMR|GSU_1501 | 303 | GSU_1501 "ABC transporter, ATP | 0.852 | 0.818 | 0.316 | 5.6e-29 |
| FB|FBgn0053970 CG33970 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 131/279 (46%), Positives = 175/279 (62%)
Query: 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ +V V A+K G+ +VVL GLN+ VP+ IYGLLG SGCGKTTLL+CIVGR L+
Sbjct: 45 QQAVCVRRAHKMYGSSKNPNVVLDGLNMTVPKGSIYGLLGASGCGKTTLLSCIVGRRRLN 104
Query: 73 AGTI-KLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
+G I L R S IGYMPQE+AL+GE ++RET Y+G + M+ IE R+
Sbjct: 105 SGEIWVLGGRPGSRGSGVPGPRIGYMPQEIALYGEFTMRETLIYFGIISAMSKGDIEDRT 164
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ +LKLL LP A K V LSGGQQRR+S AV+LLH P+LLILDEPTVG+DP+L Q IWD
Sbjct: 165 EFLLKLLNLPNASKFVKNLSGGQQRRVSLAVALLHEPELLILDEPTVGVDPVLRQSIWDH 224
Query: 184 LKEMALNGKT-IIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL-VEALEDALRH 241
L ++ NG T +IITTHYI+E AH IGL+R + + + + ++LED
Sbjct: 225 LVDITKNGHTTVIITTHYIDECAQAHMIGLLRGGKMLAEESPDYLRQQYNADSLEDVFLK 284
Query: 242 GNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGD 280
+V+ + R SI + + Q TV + PA++ D
Sbjct: 285 LSVLQNMGK-RRRSSIAQEIVEQVTVPA-ISNPALDMSD 321
|
|
| FB|FBgn0039594 CG9990 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 540 (195.1 bits), Expect = 1.0e-51, P = 1.0e-51
Identities = 116/212 (54%), Positives = 148/212 (69%)
Query: 14 IEVKHSVAVTSAY-KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ V+H+ AY KK + VL LN+ VP+ IYGLLG SGCGKTTLL+CIVGR +D
Sbjct: 74 VSVRHAF---KAYGKKKNANQVLNNLNMTVPKGTIYGLLGASGCGKTTLLSCIVGRRYMD 130
Query: 73 AGTI-----KLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
AG I K R +GYMPQE+AL+GE SI+ET Y+G++F M +I R
Sbjct: 131 AGEIFVLGGKPGTRGSGVPGKRVGYMPQEIALYGEFSIQETMMYFGWIFGMDTKEILERL 190
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+ +L L+LP K++V LSGGQQRR+SFAV+L+H+P+LLILDEPTVG+DP+L Q IW+
Sbjct: 191 QFLLNFLDLPSEKRLVKNLSGGQQRRVSFAVALMHDPELLILDEPTVGVDPLLRQSIWNH 250
Query: 184 LKEMALNG-KTIIITTHYIEEAKGAHNIGLMR 214
L + G KT+IITTHYIEEA+ AH IGLMR
Sbjct: 251 LVHITKAGQKTVIITTHYIEEARQAHTIGLMR 282
|
|
| FB|FBgn0031734 CG11147 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 114/254 (44%), Positives = 164/254 (64%)
Query: 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74
+V V + YK G+ +VL LN+NV IYGLLG SGCGKTTLL+CIVG+ L+ G
Sbjct: 3 AVEVRNGYKYYGSKSNPKIVLNQLNMNVMRGSIYGLLGASGCGKTTLLSCIVGQRRLNGG 62
Query: 75 TIKL---------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+ + S S +G+MPQE+AL E++++ET Y+G ++ +TD++I + K
Sbjct: 63 EVVVLGAKPGEPGSGVPGSRVGFMPQEIALVEEMTVKETIFYFGRIYGLTDERIREKFKL 122
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ +LL+LPPA++++ SGGQQRR+SFA +++H+P+LLILDEPTVGLDP+L + IWD L
Sbjct: 123 LKELLQLPPARQMIKQCSGGQQRRLSFACAMIHDPELLILDEPTVGLDPMLREKIWDFLV 182
Query: 186 EMALNGK-TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL-VEALEDAL---- 239
E N K +IITTHYIEEAK A+ IGLMR+ + +I+ +++EDA
Sbjct: 183 ETTRNSKLAVIITTHYIEEAKQANCIGLMRNGVLLAEDTPTNIMIKFGTQSIEDAFLILS 242
Query: 240 -RHGNVINKVDLVD 252
R GN ++D
Sbjct: 243 QRQGNEDELAQIMD 256
|
|
| ZFIN|ZDB-GENE-050517-42 abch1 "ATP-binding cassette, sub-family H, member 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 454 (164.9 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 94/203 (46%), Positives = 132/203 (65%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SF- 80
+ G VL LNL +P+ +IYGLLGPSGCGKTTLL CIVG + G I + +F
Sbjct: 27 RSYGKLKVLNNLNLTLPQGQIYGLLGPSGCGKTTLLKCIVGTLKISRGHITVLGKPPAFP 86
Query: 81 -RQISD--IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK 137
++ +GYMPQ++AL+ E +I T ++G + ++ + E R ++ L+LP
Sbjct: 87 GHEVPGKMVGYMPQDIALYNEFTISNTLWFFGRIHGLSSKETEARMSFLIDFLDLPQKHS 146
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIII 196
+V LSGGQ+RR+S +LL NPKLLILDEPTVG+DP+L IW L E+ G+ +III
Sbjct: 147 LVKNLSGGQRRRVSLGAALLQNPKLLILDEPTVGVDPVLRAKIWQHLVEIVRGGQVSIII 206
Query: 197 TTHYIEEAKGAHNIGLMRDDQYI 219
TTHYIEEA+ A+ +GLMR+ + +
Sbjct: 207 TTHYIEEARQANTVGLMRNGRLL 229
|
|
| DICTYBASE|DDB_G0267430 abcG20 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 419 (152.6 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 93/229 (40%), Positives = 143/229 (62%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K ++++ + + GN V+ LNL + I L+G SG GKTT+L I+GR D+G +
Sbjct: 12 KLAISLKNVCRGYGNTKVIDNLNLQIKSGTINCLIGASGSGKTTILRTILGRLIPDSGEV 71
Query: 77 KLSFRQISDIG--------YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+ ++ DIG + PQE AL+ +L++ T ++ + + D+ E++ EI+K
Sbjct: 72 LVFGKRPHDIGGVPGSICGFCPQEGALYYDLTLDHTLNFFSNVHQIPKDKFESKKNEIIK 131
Query: 129 LLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
LL+LP + VG LSGGQ++R+S AV+LLH+PKLLILDEPTVG+D ++ IW L+ +
Sbjct: 132 LLDLPQINSRSVGLLSGGQKKRVSLAVALLHSPKLLILDEPTVGIDMEVASNIWSYLRSL 191
Query: 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALE 236
A +G TIIITTHYI EA G+ N+ L+RD G+++ + L+E E
Sbjct: 192 ANSGVTIIITTHYINEAVGSDNVFLLRD----GKILENGAPNYLIERYE 236
|
|
| DICTYBASE|DDB_G0269026 abcG23 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 91/267 (34%), Positives = 155/267 (58%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + + + GN V++ LN + + I L+G SG GKTT+L I+G+ D G +++
Sbjct: 7 INLNNVSRSYGNVKVIEKLNFTINKGTINSLIGSSGSGKTTILKTILGKLKQDDGIVQVF 66
Query: 80 FRQI---------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
++ S +GY PQ++ L+ E++I ET ++ + M D+ + ++++L
Sbjct: 67 GKEPCGKGSEIPGSSVGYAPQDVCLYNEITIEETLSFFASIHRMPKDEYIKKRDSLVEIL 126
Query: 131 ELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
ELP KI+ LSGGQQRR+S A +L+H+PKLLILDEPTVG+ P++S IW+ L + N
Sbjct: 127 ELPSLSKIISELSGGQQRRVSLATALIHSPKLLILDEPTVGVCPLVSSKIWEHLIFLTKN 186
Query: 191 -GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE----SLVEALEDALRHGNVI 245
G TIIITTHY++E + NI L+R+ + + + ++ SL+E + L G+
Sbjct: 187 FGVTIIITTHYLQECRSCDNIFLLRNGRILESGPPNYLLSKYECSLLEDVYYKLCRGDEE 246
Query: 246 NKVDLVDGRGSIDEVLSRQCTVSVDVD 272
+ L+D + + E ++R S+ ++
Sbjct: 247 ISLQLIDSKNN--EKINRDINTSIPLE 271
|
|
| TIGR_CMR|BA_2541 BA_2541 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 79/205 (38%), Positives = 123/205 (60%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL------SFRQISDIG 87
+L L+L V + +I+GL+GPSG GKTTL+ I G N G + + + ++ IG
Sbjct: 1 MLHNLSLQVEKAEIFGLVGPSGSGKTTLIKLIAGINEATEGEVLVYNTNMPNLNEMKRIG 60
Query: 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQ 146
YM Q AL+ ELS E + M+ + + R +++ L++L KK V SGG
Sbjct: 61 YMAQADALYEELSAYENADFMATMYGLKGKHKKERIEKVFDLVQLSQHMKKQVQHFSGGM 120
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
++R+S A++LLH P++LILDEPTVG+DP+L + IW++ ++ G TII+TTH ++EA+
Sbjct: 121 KKRLSLAIALLHEPEILILDEPTVGIDPLLRKTIWEKFYDLKKKGTTIIVTTHIMDEAEF 180
Query: 207 AHNIGLMRDDQYIGRLVHHDIVESL 231
+GL+R+ G+LV E L
Sbjct: 181 CERLGLIRE----GKLVATGTTEEL 201
|
|
| TIGR_CMR|CHY_0872 CHY_0872 "ABC transporter, ATP binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 68/206 (33%), Positives = 125/206 (60%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-------S 79
K G V + ++ VP KI+GLLGP+G GK+T + + G +G ++
Sbjct: 12 KTFGPKVAVDNVSFTVPAGKIFGLLGPNGSGKSTTIRMLCGALLPTSGRAEIFGLDVVKK 71
Query: 80 FRQISD-IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI 138
R++ + IGYM Q +L+ +L++ E ++G ++++ +++R +EIL + L +K
Sbjct: 72 TREVRNLIGYMSQRFSLYEDLTVEENLDFFGRIYNLPAKLLKSRKEEILLMAGLTDNRKT 131
Query: 139 VGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
+ A LSGG ++R++ +++H PKLLILDEPT G+DP+ +I W+ +K++ G ++++T
Sbjct: 132 LTAHLSGGWKQRLALGAAMIHRPKLLILDEPTAGVDPVSRRIFWEIIKKLCATGISVLVT 191
Query: 198 THYIEEAKGAHNIGLMRDDQYIGRLV 223
THY++EA+ +G + + G+LV
Sbjct: 192 THYMDEAEICDIVGFI----FNGKLV 213
|
|
| UNIPROTKB|O33189 Rv1687c "PROBABLE CONSERVED ATP-BINDING PROTEIN ABC TRANSPORTER" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 75/234 (32%), Positives = 132/234 (56%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G + L+ +++ V I GLLGPSG GKTTL+ CIVG + +G++ + +
Sbjct: 28 GKRLALQDVSVRVACGTITGLLGPSGSGKTTLIRCIVGSQIIASGSVSVLGQPAGSAELR 87
Query: 86 --IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-L 142
+GYMPQ+ ++ +L + + RY+ + + D Q + E+++ ++L + A L
Sbjct: 88 HRVGYMPQDPTIYNDLRVIDNIRYFAELCGV-DRQA---ADEVIEAVDLRDHRTARCANL 143
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
SGGQ+ R+S A +L+ P LL+LDEPT+GLDP+L +WDR +A G T+++++H ++
Sbjct: 144 SGGQRARVSLACALVGRPDLLVLDEPTIGLDPVLRVELWDRFTALARRGTTLLVSSHVMD 203
Query: 203 EAKGAHNIGLMRDDQYIGRLVHHDI-VESLVEALEDALRHGNVINKVDLVDGRG 255
EA ++ L+R Q + H + E+ +LE+A +++ + V G
Sbjct: 204 EADRCGDLLLLRQGQLLAHTTPHRLRKETGCTSLEEAFL--SIVRRTTTVPAAG 255
|
|
| TIGR_CMR|GSU_1501 GSU_1501 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 84/265 (31%), Positives = 144/265 (54%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG--RNTLDAGTI 76
S++ T KK LK ++L V +++G LGP+G GK+T + C+VG R T TI
Sbjct: 19 SISKTYIGKKRVRVEALKDVSLTVGLGEVFGFLGPNGAGKSTTIKCLVGLMRPTKGTATI 78
Query: 77 K-LSFRQIS---DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
S I+ +IGY+P+ + + LS E R+ G F M D++ +S+E+LKLLEL
Sbjct: 79 MGESIPSIASRRNIGYLPENPSFYDYLSAEEYIRFVGSAFQMPADELTRKSEEVLKLLEL 138
Query: 133 PPAKKI-VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
A+K + + S G +R+ A L+H+P + ILDEP GLDP+ ++ + + ++ G
Sbjct: 139 WDARKRPIRSYSKGMVQRVGLAQVLVHDPDVYILDEPMSGLDPLGRSLVKEIISDLKRRG 198
Query: 192 KTIIITTHYIEEAK------GAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNVI 245
KT+ +TH I++ + G + G+++ +++ R++ + + A D + +I
Sbjct: 199 KTVFFSTHIIDDVEKICDRVGIISGGVLKSVEHVDRILEQGVTGYTITAQND--KGETLI 256
Query: 246 NKVDLVDGRGS-IDEVLSRQCTVSV 269
VD DG G + + + CTVS+
Sbjct: 257 LSVDR-DGLGDKLTSLATVGCTVSL 280
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8KLG1 | NODI_RHIEC | 3, ., 6, ., 3, ., - | 0.3258 | 0.7353 | 0.6772 | yes | N/A |
| Q63TX3 | NODI_BURPS | 3, ., 6, ., 3, ., - | 0.3348 | 0.7010 | 0.6710 | yes | N/A |
| Q1BWI2 | NODI_BURCA | 3, ., 6, ., 3, ., - | 0.3504 | 0.7010 | 0.6710 | yes | N/A |
| Q62K72 | NODI_BURMA | 3, ., 6, ., 3, ., - | 0.3348 | 0.7010 | 0.6710 | yes | N/A |
| Q39GT7 | NODI_BURS3 | 3, ., 6, ., 3, ., - | 0.3598 | 0.7010 | 0.6710 | yes | N/A |
| P26050 | NODI_BRAJA | 3, ., 6, ., 3, ., - | 0.3367 | 0.6426 | 0.6111 | yes | N/A |
| Q1M7W6 | NODI_RHIL3 | 3, ., 6, ., 3, ., - | 0.3622 | 0.6426 | 0.6012 | yes | N/A |
| Q1LKJ2 | NODI_RALME | 3, ., 6, ., 3, ., - | 0.4010 | 0.6288 | 0.6039 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 291 | |||
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-64 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-55 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-49 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-45 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-43 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-42 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-42 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-40 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-39 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-38 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-38 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-38 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-38 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-37 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-37 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-37 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-37 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-37 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-36 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-35 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-35 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-35 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-35 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-35 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-34 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-34 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-34 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-33 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-32 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-32 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-32 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-32 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-32 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-31 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-31 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-31 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-31 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-31 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-31 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-31 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-30 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-30 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-30 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-30 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-29 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 9e-29 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-28 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-28 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-27 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-27 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-27 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-27 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-27 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-27 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 9e-27 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-26 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-26 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-26 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-26 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-26 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-26 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-25 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-25 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-25 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-25 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-25 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-25 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-25 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-24 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-24 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-24 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-24 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-24 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 7e-24 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-23 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-23 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-23 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-23 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-22 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-22 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-22 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-21 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-21 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-21 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-21 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-21 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-21 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-21 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-21 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-21 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-21 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-20 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-20 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-20 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-20 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-20 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-20 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-20 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-20 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-20 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 6e-20 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-20 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-20 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-19 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-19 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-19 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-19 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-19 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-19 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-19 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-19 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-18 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-18 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-18 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-18 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-18 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-18 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-18 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-18 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-18 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-18 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-18 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 5e-18 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-18 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-18 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 9e-18 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-17 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-17 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-17 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-17 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-17 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-17 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-17 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-16 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-16 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-16 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-16 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-16 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-16 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-16 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-16 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-16 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-16 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-16 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-16 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-16 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-16 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-16 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-15 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-15 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-15 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-15 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-15 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-15 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-15 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-15 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 3e-15 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 3e-15 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-15 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-15 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-14 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-14 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 1e-14 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-14 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-14 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-14 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-14 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-14 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-14 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-14 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-14 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-14 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 5e-14 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-14 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-14 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 8e-14 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-14 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-13 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-13 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-13 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-13 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-13 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-13 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 3e-13 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-13 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-13 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-13 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-13 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-13 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-13 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 6e-13 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 7e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 8e-13 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-12 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-12 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-12 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 6e-12 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-12 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-12 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 7e-12 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 7e-12 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 7e-12 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-12 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-11 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-11 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-11 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-11 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 7e-11 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-11 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-11 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-10 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-10 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-10 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-10 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 5e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-10 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 7e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-10 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 8e-10 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-09 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 2e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-09 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 8e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 9e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-08 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-08 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-08 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-08 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-08 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-08 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-07 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-07 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-07 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 7e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 9e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-06 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 4e-06 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-05 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-05 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 7e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 8e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-04 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.002 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 0.002 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 0.003 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 0.004 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.004 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 3e-64
Identities = 92/280 (32%), Positives = 151/280 (53%), Gaps = 31/280 (11%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
E+IEV++ +T Y + L G++ V +I+GLLGP+G GKTTLL + G
Sbjct: 3 EVIEVRN---LTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP 57
Query: 72 DAGTIKL----------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+G I + R+ IGY+PQE +L+ EL++RE ++ ++ ++ ++ E
Sbjct: 58 TSGEILVLGYDVVKEPAKVRRR--IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEE 115
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R +E+L+L L A K V LSGG ++R+S A++LLH+P+LLILDEPT GLDP + I
Sbjct: 116 RIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175
Query: 181 WDRLKEMALNGK-TIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
W+ L+E+A G TI+++TH +EEA + + ++ D G+++ E+
Sbjct: 176 WELLRELAKEGGVTILLSTHILEEAEELCDRVIILND----GKII-------AEGTPEEL 224
Query: 239 LRHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINE 278
++L R + E+L V + + I E
Sbjct: 225 KEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILE 264
|
Length = 293 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 6e-55
Identities = 69/211 (32%), Positives = 112/211 (53%), Gaps = 50/211 (23%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV++ ++ K+ G L ++L V + +IYGLLGP+G GKTTL+ I+G D+
Sbjct: 1 IEVRN---LS---KRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS 54
Query: 74 GTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G IK+ + I IGY+P+E +L+ L++RE +
Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL------------------ 96
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
SGG ++R++ A +LLH+P+LLILDEPT GLDP + W+ L+
Sbjct: 97 -----------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLR 139
Query: 186 EMALNGKTIIITTHYIEEA-KGAHNIGLMRD 215
E+ GKTI++++H +EEA + + ++ +
Sbjct: 140 ELKKEGKTILLSSHILEEAERLCDRVAILNN 170
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 161 bits (411), Expect = 5e-49
Identities = 75/212 (35%), Positives = 120/212 (56%), Gaps = 15/212 (7%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+++++ +T YKK V L+LNV + +I+GLLG +G GKTT L + G +
Sbjct: 1 LQIRN---LTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
Query: 74 GTIKLSFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
GT ++ I +GY PQ AL EL++RE R+Y + + +I+ +
Sbjct: 57 GTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L++L L A K LSGG +R++S A++L+ P +L+LDEPT GLDP + IWD +
Sbjct: 117 LLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI 176
Query: 185 KEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215
E+ ++II+TTH ++EA+ I +M D
Sbjct: 177 LEVRKG-RSIILTTHSMDEAEALCDRIAIMSD 207
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 6e-45
Identities = 76/217 (35%), Positives = 119/217 (54%), Gaps = 18/217 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS------- 79
K G+ + G+N V E +++G LGP+G GKTT + + +GT +++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60
Query: 80 ---FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPA 135
R+ IG +PQ ++ +L+ RE G ++ + D+ E R++E+L+L EL A
Sbjct: 61 PRKVRR--SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
+ VG SGG +RR+ A SL+H P +L LDEPT GLDP + IWD ++ + G TI+
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 196 ITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESL 231
+TTHY+EEA K I ++ GR++ E L
Sbjct: 179 LTTHYMEEADKLCDRIAIIDH----GRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 3e-43
Identities = 74/211 (35%), Positives = 107/211 (50%), Gaps = 14/211 (6%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS- 84
K G+ L L+L V + LLGPSGCGKTTLL I G D+G I + R ++
Sbjct: 7 SKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG 66
Query: 85 ------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK 137
+IG + Q+ AL L++ E + + + +I R +E+L+L+ L +
Sbjct: 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR 126
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
LSGGQQ+R++ A +L P LL+LDEP LD L + + + LKE+ G T I
Sbjct: 127 YPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIY 186
Query: 197 TTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226
TH EEA A I +M + GR+V
Sbjct: 187 VTHDQEEALALADRIAVMNE----GRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-42
Identities = 68/188 (36%), Positives = 111/188 (59%), Gaps = 9/188 (4%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--- 83
K+ G+ +V+ GL+ +V + +GLLGP+G GKTT L ++G DAG+I L +
Sbjct: 15 KRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSR 74
Query: 84 -----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PAKK 137
+G +PQ L + ++RE +G F ++ +L+ +L A
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADA 134
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
VG LSGG +RR++ A +L+++P +L+LDEPT GLDP ++W+RL+ + GKTI++T
Sbjct: 135 KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLT 194
Query: 198 THYIEEAK 205
TH++EEA+
Sbjct: 195 THFMEEAE 202
|
Length = 306 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 3e-42
Identities = 64/185 (34%), Positives = 108/185 (58%), Gaps = 6/185 (3%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSF 80
K+ G L ++ +V + +I+GLLGP+G GKTT + I+G D+G + L
Sbjct: 7 TKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI 66
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIV 139
+ IGY+P+E L+ ++ + + Y + + ++ R E L+ LEL A K V
Sbjct: 67 AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRV 126
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS G Q+++ F +++H+P+LLILDEP GLDP+ +++ D ++E+A GKT+I++TH
Sbjct: 127 EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTH 186
Query: 200 YIEEA 204
+E
Sbjct: 187 QMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-40
Identities = 65/201 (32%), Positives = 110/201 (54%), Gaps = 16/201 (7%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV++ V KK G+ ++G++ V +I+GLLGP+G GKTT + + +
Sbjct: 1 IEVENLV------KKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54
Query: 74 GTIKLSFRQIS--------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G ++ + IG + Q+L++ EL+ E + ++ + + R E
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDE 114
Query: 126 ILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L + L A ++V SGG +RR+ A SL+H P++L LDEPT+GLDP +W+ +
Sbjct: 115 LLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 185 KEM-ALNGKTIIITTHYIEEA 204
+++ G TI++TTHY+EEA
Sbjct: 175 EKLKEEFGMTILLTTHYMEEA 195
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-39
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 11/215 (5%)
Query: 2 RKISIKRIDPEIIEVKHSVAV--TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKT 59
+ I I +VA+ K G+ V+ GL+ V + +GLLGP+G GK+
Sbjct: 22 KHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKS 81
Query: 60 TLLNCIVGRNTLDAGTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYM 111
T+ I+G + DAG I + + IG +PQ L E ++RE +G
Sbjct: 82 TIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRY 141
Query: 112 FDMTDDQIETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
F M+ +IE +L+ L A V LSGG +RR++ A +L+++P+LLILDEPT
Sbjct: 142 FGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
GLDP +IW+RL+ + GKTI++TTH++EEA+
Sbjct: 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE 236
|
Length = 340 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-38
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 42/190 (22%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+ G L ++L + +I L+GP+G GK+TLL I G +G I + + I+
Sbjct: 7 FRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAK- 65
Query: 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ 146
L + E R GY+ LSGGQ
Sbjct: 66 ------------LPLEELRRRIGYVPQ----------------------------LSGGQ 85
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-K 205
++R++ A +LL NP LL+LDEPT GLDP + + + L+E+A G+T+II TH E A
Sbjct: 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145
Query: 206 GAHNIGLMRD 215
A + +++D
Sbjct: 146 AADRVIVLKD 155
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 2e-38
Identities = 65/218 (29%), Positives = 116/218 (53%), Gaps = 19/218 (8%)
Query: 14 IEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IE+K+ ++ Y G V LKG++L++ + + ++GPSG GK+TLLN + G +
Sbjct: 1 IELKN---LSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT 57
Query: 73 AGTI--------KLSFRQISD-----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
+G + KLS ++++ IG++ Q L +L+ E + + +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 120 ETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R++E+L+ + L LSGGQQ+R++ A +L ++PK+++ DEPT LD +
Sbjct: 118 RERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 179 IIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215
+ + L+E+ G TI++ TH E A+ A I +RD
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRD 215
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 2e-38
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 25/208 (12%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE++ +T ++ G VLKG++L+V +I ++GPSG GK+TLL IVG D+
Sbjct: 1 IELRG---LTKSF---GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54
Query: 74 GTIKLSFRQISD------------IGYMPQELALHGELSIRETFRYYGYM-FDMTDDQIE 120
G + + IS +G + Q AL L++ E + +++++I
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIR 114
Query: 121 TRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
E L+ + L A LSGG ++R++ A +L +P+LL+ DEPT GLDPI S +
Sbjct: 115 EIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGV 174
Query: 180 IWD---RLKEMALNGKTIIITTHYIEEA 204
I D LK+ G T I+ TH ++ A
Sbjct: 175 IDDLIRSLKKE--LGLTSIMVTHDLDTA 200
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 3e-38
Identities = 73/229 (31%), Positives = 114/229 (49%), Gaps = 15/229 (6%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K ++ + + K G+ + ++L++ + + LLGPSGCGKTTLL I G +G I
Sbjct: 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 77 KLSFRQISD-------IGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILK 128
L I+D IG + Q AL +++ E + + +I+ R +E L+
Sbjct: 63 LLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALE 122
Query: 129 LLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L+ L A + LSGGQQ+R++ A +L+ PK+L+LDEP LD L + + LKE+
Sbjct: 123 LVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKEL 182
Query: 188 ALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
G T + TH EEA + I +M D GR+ E + E
Sbjct: 183 QRELGITFVYVTHDQEEALAMSDRIAVMND----GRIEQVGTPEEIYER 227
|
Length = 352 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-37
Identities = 69/213 (32%), Positives = 119/213 (55%), Gaps = 24/213 (11%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-------- 78
K+ G L G++L + +YGLLGP+G GKTTL+ + +GTI++
Sbjct: 8 KRYGKKRALDGVSLTLG-PGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ 66
Query: 79 --SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A 135
R+ IGY+PQE ++ ++RE Y ++ + +++ R E+L+L+ L A
Sbjct: 67 PQKLRRR--IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA 124
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKT 193
KK +G+LSGG +RR+ A +L+ +P +LI+DEPT GLDP + I R L E+ + +
Sbjct: 125 KKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP--EERIRFRNLLSELGED-RI 181
Query: 194 IIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225
+I++TH +E+ + + + ++ G+LV
Sbjct: 182 VILSTHIVEDVESLCNQVAVLNK----GKLVFE 210
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-37
Identities = 66/220 (30%), Positives = 117/220 (53%), Gaps = 11/220 (5%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI- 76
++ + K G+ + ++ VP +I+GLLGP+G GKTT I+G G I
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 77 ----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
LS + IGY+P+E L+ ++++ + +Y + M +I+ + + L+ LE+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEI 120
Query: 133 PPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
K K + LS G Q++I F +++H P+LLILDEP GLDP+ +++ D + E+ G
Sbjct: 121 VGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVES 230
TII ++H +E + + +++ G+ V + VE
Sbjct: 181 ATIIFSSHRMEHVEELCDRLLMLKK----GQTVLYGTVED 216
|
Length = 300 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 4e-37
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 46/202 (22%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------- 76
K+ G VL ++LN+ +I LLGPSG GK+TLL CI G D+G+I
Sbjct: 8 KRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL 67
Query: 77 -KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA 135
IG + Q+ AL L++ E
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLE-------------------------------- 95
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTI 194
I LSGGQQ+R++ A +L +P +L+LDEPT LDPI + + LK + A G T+
Sbjct: 96 -NIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITV 154
Query: 195 IITTHYIEEAKG-AHNIGLMRD 215
++ TH ++EA A + ++RD
Sbjct: 155 VLVTHDLDEAARLADRVVVLRD 176
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 4e-37
Identities = 85/288 (29%), Positives = 134/288 (46%), Gaps = 36/288 (12%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD 85
K+ GN + +NL + E + L+GPSG GKTT L I +G I + ISD
Sbjct: 8 SKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
IGY+ Q++ L L++ E + ++I+ R+ E+L L+ L P++
Sbjct: 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSE 127
Query: 137 ---KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GK 192
+ LSGGQQ+R+ A +L +P +L++DEP LDPI + + + +KE+ GK
Sbjct: 128 YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK 187
Query: 193 TIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDI------------VESLVEALEDAL 239
TI+ TH I+EA K A I +M G +V +D VE E L
Sbjct: 188 TIVFVTHDIDEALKLADRIAVMDA----GEIVQYDTPDEILANPANDFVEDFFGESERGL 243
Query: 240 RHGNVINKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGDYVWTQLE 287
R ++++ D V E + + VDR A+ D++
Sbjct: 244 RLLSLVSVADAVR----RGEPADGEPLLEGFVDRDAL--SDFLARGRS 285
|
Length = 309 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 5e-37
Identities = 69/196 (35%), Positives = 112/196 (57%), Gaps = 9/196 (4%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
++ + K G+ VV+ L+ + + +GLLGP+G GK+T+ ++G + D G I +
Sbjct: 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 79 SFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ IG +PQ L E ++RE +G F M+ +IE +L+
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFA 123
Query: 131 ELPPAKKI-VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L + V LSGG +RR++ A +L+++P+LLILDEPT GLDP +IW+RL+ +
Sbjct: 124 RLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA 183
Query: 190 NGKTIIITTHYIEEAK 205
GKTI++TTH++EEA+
Sbjct: 184 RGKTILLTTHFMEEAE 199
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 6e-37
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 22/221 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+IE+K+ V+ Y G V LK +NL + + ++GPSG GK+TLLN + G +
Sbjct: 1 MIELKN---VSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57
Query: 72 DAGTIKL--------------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117
+G + + R+ IG++ Q L +L++ E + +
Sbjct: 58 TSGEVLINGKDLTKLSEKELAKLRR-KKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG 116
Query: 118 QIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+ + ++E+L++L L KK LSGGQQ+R++ A +L++NPK+++ DEPT LD
Sbjct: 117 RRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176
Query: 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRD 215
++ + + L+E+ GKTII+ TH E AK A + ++D
Sbjct: 177 TAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKD 217
|
Length = 226 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-36
Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77
+ + + K G+ VLK +NL++ + + LLGPSGCGK+TLL I G +G I
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 78 LSFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ R ++D I + Q AL+ +++ E + + + +I+ R KE+ KLL
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLL 121
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-A 188
L + LSGGQ++R++ A +L+ PK+ +LDEP LD L ++ +K++
Sbjct: 122 GLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181
Query: 189 LNGKTIIITTHYIEEAK-GAHNIGLMRDDQYIGRLVH 224
G T I TH EA A I +M D GR+
Sbjct: 182 RLGTTTIYVTHDQVEAMTLADRIVVMND----GRIQQ 214
|
Length = 338 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 8e-36
Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 28/211 (13%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IEV+ K G+ V+L G++L+VP +I +LG SG GK+TLL I+G D
Sbjct: 8 LIEVRG------VTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61
Query: 73 AGTIKL---SFRQISD---------IGYMPQELALHGELSIRE--TFRYYGYMFDMTDDQ 118
G I + Q+S+ +G + Q+ AL L++ E F + + +
Sbjct: 62 KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT-KLPESL 120
Query: 119 IETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
I L+L+ L A LSGG ++R++ A ++ +P+LL LDEPT GLDPI
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPIS 180
Query: 177 SQIIWDRLKEMALN---GKTIIITTHYIEEA 204
+ +I + ++E LN G T+I+ TH ++
Sbjct: 181 AGVIDELIRE--LNDALGLTVIMVTHDLDSL 209
|
Length = 263 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-35
Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 28/226 (12%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
++EV++ ++ Y G +L L+ ++P+ +I G+LGP+G GK+TLL C+ G
Sbjct: 2 MLEVEN---LSFGY---GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK 55
Query: 73 AGTIKLSFRQISD---------IGYMPQELALHGELSIRET-----FRYYGYMFDMT--D 116
+G + L + I+ + Y+PQ + L++ E + + G + D
Sbjct: 56 SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKED 115
Query: 117 DQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
++I + E+L L L A + V LSGG+++R+ A +L +L+LDEPT LD I
Sbjct: 116 EEIVEEALELLGLEHL--ADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD-IA 172
Query: 177 SQI-IWDRLKEMALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYI 219
QI + + L+++ G T+++ H + A + A ++ L++D + +
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIV 218
|
Length = 258 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-35
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 41/196 (20%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--N 69
+ V + + + K++ LK ++ ++ ++GPSG GK+TLLN + GR
Sbjct: 7 RNLTVTVKSSPSKSGKQL-----LKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG 61
Query: 70 TLDAGTIKLSFRQISD------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
+G + ++ R + IGY+PQ+ LH L++RET +
Sbjct: 62 LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF---------------- 105
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
A K+ G LSGG+++R+S A+ L+ NP LL LDEPT GLD + +
Sbjct: 106 -----------AAKLRG-LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSL 153
Query: 184 LKEMALNGKTIIITTH 199
L+ +A G+TII + H
Sbjct: 154 LRRLADTGRTIICSIH 169
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-35
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 41/214 (19%)
Query: 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74
E+K+ ++ +Y G L ++L + + + ++GP+G GK+TLL + G +G
Sbjct: 1 ELKN---LSFSYPD-GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56
Query: 75 TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ---------------- 118
+ + + ++ LS++E R G +F DDQ
Sbjct: 57 EVLVDGKDLTK-------------LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLEN 103
Query: 119 -------IETRSKEILKLLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
IE R +E L+L+ L + LSGGQ++R++ A L +P +L+LDEPT
Sbjct: 104 LGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
GLDP + + + LK++ GKTIII TH ++
Sbjct: 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLL 197
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-35
Identities = 60/199 (30%), Positives = 106/199 (53%), Gaps = 12/199 (6%)
Query: 14 IEVKHSVAVTSAY-KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+EV++ V+ Y G L+ ++L+V E + L+GPSGCGK+TLL I G
Sbjct: 1 LEVRN---VSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT 57
Query: 73 AGTIKLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEIL 127
+G + + ++ D GY+ Q+ AL L++ + G + + R++E+L
Sbjct: 58 SGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVA-LGLELQGVPKAEARERAEELL 116
Query: 128 KLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+L+ L LSGG ++R++ A +L +P +L+LDEP LD + + + + L +
Sbjct: 117 ELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 187 MAL-NGKTIIITTHYIEEA 204
+ GKT+++ TH I+EA
Sbjct: 177 IWRETGKTVLLVTHDIDEA 195
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 8e-35
Identities = 60/187 (32%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G H VL+ ++ V + ++GP+G GK+TLL I+G +G+I++ + +
Sbjct: 10 GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKR 69
Query: 86 IGYMPQ-------------ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
IGY+PQ ++ L G + FR D + E + L EL
Sbjct: 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS----KADKAKVDEALERVGLSEL 125
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
A + +G LSGGQQ+R+ A +L+ +P LL+LDEP G+DP + I++ L+E+ G
Sbjct: 126 --ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGM 183
Query: 193 TIIITTH 199
TI++ TH
Sbjct: 184 TILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 1e-34
Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 33/262 (12%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
+IEV++ +T +Y GN VL+ ++L+V + +I L+GP+G GK+TLL I+G
Sbjct: 1 MMPMIEVEN---LTVSY---GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL 54
Query: 70 TLDAGTIKLSFRQISD------IGYMPQELALHGELSIR-----ETFRYY-GYMFDMTDD 117
+G IK+ + + IGY+PQ+ ++ I RY F +
Sbjct: 55 KPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNK 114
Query: 118 QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ + + E L+ + + + +G LSGGQ++R+ A +L NP LL+LDEP G+D
Sbjct: 115 KDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD--DQYI---GRLVHHDIVESL 231
+ I+D LKE+ GKT+++ T H++GL+ D+ I L+ E +
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVT---------HDLGLVMAYFDRVICLNRHLIASGPPEEV 225
Query: 232 VEALEDALRHGNVINKVDLVDG 253
+ G +
Sbjct: 226 LTEENLEKAFGGSLAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-34
Identities = 64/194 (32%), Positives = 103/194 (53%), Gaps = 6/194 (3%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ + K G VL+ +NL+V + + +LGPSGCGK+TLL I G +G +
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 77 KLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
L R ++ DIGY+ QE AL L++ + + + + R+KE+L+L+ L
Sbjct: 61 LLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGL 120
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-N 190
K LSGG ++R++ A +L PKLL+LDEP LD + + + D L +
Sbjct: 121 AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET 180
Query: 191 GKTIIITTHYIEEA 204
KT+++ TH ++EA
Sbjct: 181 RKTVLLVTHDVDEA 194
|
Length = 248 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-34
Identities = 54/194 (27%), Positives = 106/194 (54%), Gaps = 10/194 (5%)
Query: 21 AVTSAYKKIGNHVV-LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
A+T ++ + V + G++ V ++ GLLGP+G GKTT L + G DAG +
Sbjct: 6 ALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVD 65
Query: 80 -FRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
F + + +G++ L+ L+ RE Y+ ++ + D++ R +E+ L
Sbjct: 66 GFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLG 125
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
+ + VG S G +++++ A +L+H+P +L+LDEPT GLD + ++ + + ++++
Sbjct: 126 MEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL 185
Query: 191 GKTIIITTHYIEEA 204
GK I+ +TH ++E
Sbjct: 186 GKCILFSTHIMQEV 199
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-33
Identities = 62/185 (33%), Positives = 105/185 (56%), Gaps = 10/185 (5%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFR 81
K+ G + ++L VP+N +YGLLGP+G GK+TLL I G +G I + +
Sbjct: 8 KRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK 67
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PAKKIVG 140
+ IG + + L+ L+ RE + + + + D +I+ E+L +++L KK
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRID----EVLNIVDLTNTGKKKAK 123
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
S G ++R+ A++LL++PKLLILDEPT GLDPI Q + + ++ G T+I+++H
Sbjct: 124 QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHI 183
Query: 201 IEEAK 205
+ E +
Sbjct: 184 LSEVQ 188
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-32
Identities = 67/194 (34%), Positives = 104/194 (53%), Gaps = 9/194 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + + K G V L G++L++ E + + LLGPSGCGKTTLL I G T +G I L
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 80 FRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
+ I++ + + Q AL L++ E + + + +I+ R E L L++L
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
A + LSGGQQ+R++ A +L++ PK+L+LDEP LD L + + LK +
Sbjct: 121 EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL 180
Query: 191 GKTIIITTHYIEEA 204
G T + TH EEA
Sbjct: 181 GITFVFVTHDQEEA 194
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-32
Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 34/235 (14%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++EVK+ ++ ++ G V L ++ ++ + + GL+G SG GK+TL I+G
Sbjct: 1 LLEVKN---LSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP 57
Query: 72 DAGTIKLSFRQIS------------DIGYMPQE--LALH-----GELSIRETFRYYGYMF 112
+G+I + + +I + Q+ +L+ GE I E R +G +
Sbjct: 58 TSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE-QIAEPLRIHGKLS 116
Query: 113 DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+ + +L + LP + LSGGQ++R++ A +L NPKLLI DEPT
Sbjct: 117 K--KEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTS 174
Query: 171 GLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
LD + I D LK++ G T++ TH + A + +M Y G++V
Sbjct: 175 ALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM----YAGKIV 225
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 3e-32
Identities = 68/211 (32%), Positives = 97/211 (45%), Gaps = 29/211 (13%)
Query: 35 LKGLNLNV----PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----- 85
L L + E G+ G SG GK+TLL CI G D GTI L+ + D
Sbjct: 10 LPDFTLKIDFDLNEEVT-GIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKI 68
Query: 86 --------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AK 136
IG + Q+ AL L++RE + G + + E+L LL L
Sbjct: 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAF-GLKR-KRNREDRISVDELLDLLGLDHLLN 126
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA--LNGKTI 194
+ LSGG+++R++ A +L P+LL+LDEP LD L + LK++ LN I
Sbjct: 127 RYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 195 IITTHYIEEA-KGAHNIGLMRDDQYIGRLVH 224
+ TH + EA A I +M D GRL +
Sbjct: 187 FV-THDLSEAEYLADRIVVMED----GRLQY 212
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 5e-32
Identities = 69/227 (30%), Positives = 110/227 (48%), Gaps = 30/227 (13%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ + Y K +L G++L VPE +I LLG +G GKTTLL I+G +G+I+ R
Sbjct: 6 LNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL-KLL 130
I+ IGY+P+ + EL++ E Y + K L ++
Sbjct: 63 DITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR------RAKRKARLERVY 116
Query: 131 ELPPAKK-----IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
EL P K + G LSGG+Q+ ++ A +L+ PKLL+LDEP+ GL P + + I++ ++
Sbjct: 117 ELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR 176
Query: 186 EMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231
E+ G TI++ A A ++ GR+V L
Sbjct: 177 ELRDEGVTILLVEQNARFALEIADRAYVLER----GRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 115 bits (292), Expect = 7e-32
Identities = 59/211 (27%), Positives = 96/211 (45%), Gaps = 51/211 (24%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE K+ V+ +Y VLK ++L + + ++GPSG GK+TLL ++ +
Sbjct: 1 IEFKN---VSFSYPG-RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G I + + D I Y+PQ+ ++F T
Sbjct: 57 GEILIDGVDLRDLDLESLRKNIAYVPQD----------------PFLFSGT--------- 91
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
I + + LSGGQ++RI+ A +LL +P +LILDE T LDP +I + L
Sbjct: 92 -IRENI-----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEAL 139
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215
+ +A GKT+I+ H + + A I ++ D
Sbjct: 140 RALA-KGKTVIVIAHRLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-31
Identities = 60/206 (29%), Positives = 95/206 (46%), Gaps = 48/206 (23%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--------SFR 81
G VL L+L++ +I G+LGP+G GK+TLL + G +G I L S +
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 82 QIS-DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
+++ I Y+PQ L L L L L A +
Sbjct: 70 ELARKIAYVPQALEL-------------------------------LGLAHL--ADRPFN 96
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTH 199
LSGG+++R+ A +L P +L+LDEPT LD + + L+ +A GKT+++ H
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLH 156
Query: 200 YIEEA-KGAHNIGLMRDDQYIGRLVH 224
+ A + A + L++D GR+V
Sbjct: 157 DLNLAARYADRVILLKD----GRIVA 178
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-31
Identities = 67/199 (33%), Positives = 101/199 (50%), Gaps = 16/199 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------- 76
KK G+ V+L LNL + + K+Y ++G SG GK+TLLN I D+G +
Sbjct: 6 KKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPL 65
Query: 77 ----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
FR+ +GY+ Q AL ++ E ++ + + KE L+ + L
Sbjct: 66 NSKKASKFRR-EKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGL 124
Query: 133 PPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
K+ + LSGG+Q+R++ A ++L P L++ DEPT LDP + D L E+ G
Sbjct: 125 NLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEG 184
Query: 192 KTIIITTHYIEEAKGAHNI 210
KTIII TH E AK A +
Sbjct: 185 KTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-31
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 31/216 (14%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV++ ++ Y LK ++L++ + L+GPSG GK+TLL C+ G +
Sbjct: 1 IEVEN---LSKTYP--NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTS 55
Query: 74 GTIKL-----------SFRQI-SDIGYMPQELA-----------LHGELSIRETFRYYGY 110
G++ + + RQ+ IG + Q+ L G L R T+R
Sbjct: 56 GSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFG 115
Query: 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+F + Q + E + LL+ A + LSGGQQ+R++ A +L+ PKL++ DEP
Sbjct: 116 LFPKEEKQRALAALERVGLLDK--AYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173
Query: 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAK 205
LDP S+ + D LK + G T+I++ H ++ A+
Sbjct: 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAR 209
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 3e-31
Identities = 69/208 (33%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K G VL ++L+V + +IYG LGP+G GKTT + I+G D+G I +
Sbjct: 8 KTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN 67
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138
IG + + + L+ RE R + + +I+ E+L ++ L AKK
Sbjct: 68 IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRID----EVLDVVGLKDSAKKK 123
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKTIII 196
V S G ++R+ A++LL NP LLILDEPT GLDP I R + + G T++I
Sbjct: 124 VKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPD--GIKELRELILSLRDQGITVLI 181
Query: 197 TTHYIEE-AKGAHNIGLMRDDQYIGRLV 223
++H + E K A IG++ G+L+
Sbjct: 182 SSHLLSEIQKVADRIGIINK----GKLI 205
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-31
Identities = 61/194 (31%), Positives = 97/194 (50%), Gaps = 17/194 (8%)
Query: 22 VTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIK 77
V K + +L ++L+V ++ +LG SG GKTTLL+ I GR G I
Sbjct: 9 VGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQIL 68
Query: 78 LSFRQIS------DIGYMPQELALHGELSIRETFRYYGYMFDM---TDDQIETRSKEILK 128
+ + + Y+ Q+ L L++RET Y + + + D I + E +
Sbjct: 69 FNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTA-ILRLPRKSSDAIRKKRVEDVL 127
Query: 129 LLEL---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
L +L +V +SGG++RR+S AV LL +PK+LILDEPT GLD + + L
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 186 EMALNGKTIIITTH 199
++A + +I+T H
Sbjct: 188 QLARRNRIVILTIH 201
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 7e-31
Identities = 71/259 (27%), Positives = 117/259 (45%), Gaps = 57/259 (22%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K+ G V L ++ +V +I+GL+GP+G GKTTL N I G +G++ I+
Sbjct: 8 KRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDIT-- 65
Query: 87 GYMPQELALHG------------ELSIRET-----FRYYGYMFDM-----TDDQIETRSK 124
G P E+A G EL++ E G + + + R++
Sbjct: 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAE 125
Query: 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+L+ + L A + G LS GQQRR+ A +L +PKLL+LDEP GL+P ++ + +
Sbjct: 126 ELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAEL 185
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGN 243
++E+ G T+++ +E H++ ++ L V L G
Sbjct: 186 IRELRERGITVLL----VE-----HDMDVVM------SLADRVTV----------LDQGR 220
Query: 244 VINKVDLVDGRGSIDEVLS 262
VI G+ DEV +
Sbjct: 221 VI-------AEGTPDEVRN 232
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 9e-31
Identities = 70/232 (30%), Positives = 126/232 (54%), Gaps = 27/232 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK- 77
S+ V+S K G L ++ + +I G LGP+G GK+T + I G D+G+++
Sbjct: 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 78 ---------LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
++ IGY+P+ L+ ++ +RE ++ ++ M ++ R +E+++
Sbjct: 62 CGEDVLQNPKEVQRN--IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIE 119
Query: 129 LLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LK 185
L+ L P K +G LS G ++R+ A +L+H+PK+LILDEPT GLDP +Q++ R +K
Sbjct: 120 LVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDP--NQLVEIRNVIK 177
Query: 186 EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI---GRLVHHDIVESLVEA 234
+ + KTII++TH ++E + + D I G++V ++ L A
Sbjct: 178 NIGKD-KTIILSTHIMQEVEA------ICDRVIIINKGKIVADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 11/188 (5%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K+ G V+ G++L+V + +I GLLGP+G GKTT IVG D+G I L + I+
Sbjct: 8 KRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL 67
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A 135
IGY+PQE ++ +L++ E + ++ + E + +E+L+ +
Sbjct: 68 PMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLR 127
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
K +LSGG++RR+ A +L NPK L+LDEP G+DPI Q I +K + G ++
Sbjct: 128 KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVL 187
Query: 196 ITTHYIEE 203
IT H + E
Sbjct: 188 ITDHNVRE 195
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 69/231 (29%), Positives = 108/231 (46%), Gaps = 35/231 (15%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAG 74
+ + G+ LK ++L++P+ +I L+GPSGCGK+TLL + N L D G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 75 TIKLSFRQISDIGYMPQEL------------ALHGELSIRETFRY----YGYMFDMTDDQ 118
+ L + I D+ EL G SI + Y +G ++
Sbjct: 61 EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPG--SIYDNVAYGLRLHGI---KLKEE 115
Query: 119 IETRSKEILKLLELPPAKK---IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
++ R +E L+ L K LSGGQQ+R+ A +L + P++L+LDEPT LDPI
Sbjct: 116 LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPI 175
Query: 176 LSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225
+ I + + E+ TI+I TH +++A A + GRLV
Sbjct: 176 STAKIEELIAELK-KEYTIVIVTHNMQQAARVADRTAFL----LNGRLVEF 221
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-30
Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 29/230 (12%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-- 71
IE ++ VT Y G + LNL + + + L+GPSG GKTT + I N L
Sbjct: 1 IEFEN---VTKRYG--GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI---NRLIE 52
Query: 72 -DAGTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+G I + I + IGY+ Q++ L +++ E + ++I
Sbjct: 53 PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRE 112
Query: 122 RSKEILKLLELPPAK---KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E+L L+ L PA+ + LSGGQQ+R+ A +L +P LL++DEP LDPI
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 179 IIWDRLKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHD 226
+ + K + GKTI+ TH I+EA + A I +M++ G +V
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKN----GEIVQVG 218
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 4e-30
Identities = 70/224 (31%), Positives = 106/224 (47%), Gaps = 36/224 (16%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ Y VL+ L+L +P + ++G SG GK+TLL ++G G I L
Sbjct: 477 VSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535
Query: 82 QISD---------IGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKL-- 129
++D +GY+ Q+ L G SIRE + TD++I E +L
Sbjct: 536 DLNDIDLASLRRQVGYVLQDPFLFSG--SIRENIA--LGNPEATDEEI----IEAAQLAG 587
Query: 130 -----LELPPA-KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
LP VG LSGGQ++R++ A +LL PK+L+LDE T LDP I
Sbjct: 588 AHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
I L ++ L G+T+II H + + A I ++ G++V
Sbjct: 648 ILQNLLQI-LQGRTVIIIAHRLSTIRSADRIIVLDQ----GKIV 686
|
Length = 709 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 9e-30
Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 31/217 (14%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IEVK+ ++ Y G H LK +NL + + ++ ++GPSG GK+TLL + G
Sbjct: 3 MIEVKN---LSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT 57
Query: 73 AGTIKLSFRQIS------------DIGYMPQELAL-----------HGELSIRETFRYYG 109
+G I + QI+ DIG + Q+ L G L T+R
Sbjct: 58 SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+F D + E + +L+ A + LSGGQQ+R++ A +L+ PK+++ DEP
Sbjct: 118 GLFSKEDKAQALDALERVGILDK--AYQRASTLSGGQQQRVAIARALVQQPKIILADEPV 175
Query: 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAK 205
LDP ++ + D LK++ G T+I+ H ++ AK
Sbjct: 176 ASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAK 212
|
Length = 258 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-29
Identities = 72/191 (37%), Positives = 100/191 (52%), Gaps = 17/191 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K+ G LK ++L+V + + LLGPSGCGKTTLL I G AGTI R I+
Sbjct: 12 KRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL 71
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK-KI 138
D G + Q AL L++ + Y M ++ R E+L L+ LP ++ K
Sbjct: 72 PPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY 131
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK-EM-ALN---GKT 193
G LSGGQQ+R++ A +L +P LL+LDEP LD + + L+ E+ L G T
Sbjct: 132 PGQLSGGQQQRVALARALATSPGLLLLDEPLSALD----ARVREHLRTEIRQLQRRLGVT 187
Query: 194 IIITTHYIEEA 204
I+ TH EEA
Sbjct: 188 TIMVTHDQEEA 198
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-29
Identities = 59/196 (30%), Positives = 105/196 (53%), Gaps = 10/196 (5%)
Query: 20 VAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+ VT K G+ V ++ ++ E +I GLLG +G GKTTLL I D+G + +
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 79 -SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ D IG + E L+ L+ RE +Y+ + ++ +I+ R E+ K L
Sbjct: 62 DGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL 121
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+L + VG S G +++++ A +L+H+P +L+LDEPT GLD + D +K++
Sbjct: 122 QLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 190 NGKTIIITTHYIEEAK 205
G+ +I ++H ++E +
Sbjct: 182 EGRAVIFSSHIMQEVE 197
|
Length = 245 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 9e-29
Identities = 62/200 (31%), Positives = 91/200 (45%), Gaps = 26/200 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
LK +NLN+ + ++GPSG GK+TLL CI +G+I L I+
Sbjct: 13 NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGK 72
Query: 86 --------IGYMPQELA-----------LHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
IG + Q LHG L + T+R F D + + E
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALER 132
Query: 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+ L + A + LSGGQQ+R++ A +L P L++ DEP LDP S+ + D LK
Sbjct: 133 VGLADK--AYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 187 MALN-GKTIIITTHYIEEAK 205
+ G T+II H ++ AK
Sbjct: 191 INKEDGITVIINLHQVDLAK 210
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-28
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 37/205 (18%)
Query: 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
+++ G LK ++L + + + L+GP+G GK+TLL + G +G + + S
Sbjct: 10 SFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-----------------------IET 121
E S+ E + G +F DDQ IE
Sbjct: 70 S------------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEE 117
Query: 122 RSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R E L+L+ L + LSGGQ++R++ A L P++L+LDEPT GLDP + +
Sbjct: 118 RVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 181 WDRLKEMAL-NGKTIIITTHYIEEA 204
+ LK++ GKTIII TH +E
Sbjct: 178 LELLKKLKEEGGKTIIIVTHDLELV 202
|
Length = 235 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-28
Identities = 65/233 (27%), Positives = 116/233 (49%), Gaps = 40/233 (17%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-----RNTLDAGTI--------KLSF 80
+ G++ + + +I G++G SG GK+ L I+G + G I LS
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 81 RQI-----SDIGYMPQE--LALH-----GELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+++ +I + Q+ +L+ G+ I E R +G ++ + + R+ E+L+
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQ-IAEVLRLHGKG--LSKKEAKERAIELLE 136
Query: 129 LLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDR 183
L+ +P ++ + + LSGG ++R+ A++L NPKLLI DEPT LD + +QI+ D
Sbjct: 137 LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQIL-DL 195
Query: 184 LKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
LKE+ G +I+ TH + A + +M Y GR+V VE + +
Sbjct: 196 LKELQREKGTALILITHDLGVVAEIADRVAVM----YAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD---AGTIKLS--------FRQISDIGYMPQELALHGE 98
++G SG GKTTL+N + R+ +G++ L+ R IS Y+ Q+
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAIS--AYVQQDDLFIPT 113
Query: 99 LSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPP-AKKIVGA------LSGGQQ 147
L++RE + M T + R E+L+ L L A +G LSGG++
Sbjct: 114 LTVREHL-MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGER 172
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+R++FA LL +P LL DEPT GLD ++ + LK +A GKTII T H
Sbjct: 173 KRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-27
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
L ++L + + G++G SG GK+TL + G +G+I L + ++
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81
Query: 85 -DIGYMPQ--ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIV 139
+ + Q +L+ ++ + + + R E+L + LPP +
Sbjct: 82 RPVQMVFQDPYSSLNPRRTVGRILS--EPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITT 198
LSGGQ++RI+ A +L+ PKLLILDEPT LD + I + L E+ G T + +
Sbjct: 140 HELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFIS 199
Query: 199 H 199
H
Sbjct: 200 H 200
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-27
Identities = 67/206 (32%), Positives = 112/206 (54%), Gaps = 21/206 (10%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE+K+ +K G+ VLKG++L V + ++ ++GPSG GK+TLL CI D+
Sbjct: 1 IEIKN------LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDS 54
Query: 74 GTIKLSFRQISD-----------IGYMPQELALHGELSIRETFRYYGYM--FDMTDDQIE 120
GTI + +++D +G + Q+ L L++ E + M+ + E
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITL-APIKVKGMSKAEAE 113
Query: 121 TRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
R+ E+L+ + L A LSGGQQ+R++ A +L NPK+++ DEPT LDP L
Sbjct: 114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAK 205
+ D +K++A G T+++ TH + A+
Sbjct: 174 VLDVMKDLAEEGMTMVVVTHEMGFAR 199
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-27
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 13/195 (6%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------IG 87
+L L+L++ +I L G +G GKTTL + G +G+I L+ + I IG
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIG 74
Query: 88 YMPQELALH-GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGG 145
Y+ Q++ S+RE D E +LK L+L ++ +LSGG
Sbjct: 75 YVMQDVDYQLFTDSVREELLL---GLKELDAGNEQAE-TVLKDLDLYALKERHPLSLSGG 130
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EA 204
Q++R++ A +LL LLI DEPT GLD + + + ++E+A GK +I+ TH E A
Sbjct: 131 QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLA 190
Query: 205 KGAHNIGLMRDDQYI 219
K + L+ + +
Sbjct: 191 KVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-27
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 10/208 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
V + + K+ GN L LNL++ + + LLGPSGCGKTT L I G +G I +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 80 FRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
R ++D I + Q AL+ +++ + + + + D+I+ R +E+ +LL++
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQI 120
Query: 133 PPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
+ LSGGQ++R++ +++ PK+ ++DEP LD L + LK +
Sbjct: 121 EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL 180
Query: 191 GKTIIITTH-YIEEAKGAHNIGLMRDDQ 217
G T I TH +E A I +M D Q
Sbjct: 181 GTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-27
Identities = 61/201 (30%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+EV ++ Y G L ++ V + LLGP+G GK+TL + +
Sbjct: 2 LEVAG---LSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE 55
Query: 74 GTIKL---SFRQ-----ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G I + R+ ++ +G + Q+ L +LS+R+ RY+ + ++ + R E
Sbjct: 56 GQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAE 115
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L L L A V L+GG +RR+ A +LLH P LL+LDEPTVGLDP I +
Sbjct: 116 LLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHV 175
Query: 185 KEMALN-GKTIIITTHYIEEA 204
+ +A + G +++ TH ++E
Sbjct: 176 RALARDQGLSVLWATHLVDEI 196
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-27
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 15/182 (8%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-----------FR 81
LKG++ + + +I G +GP+G GKTT L + G +G ++++ R
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR 94
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI-VG 140
+I + Q+ L +L + ++F ++D+ + + R E+ +LL+L V
Sbjct: 95 RIGVV--FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR 152
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTH 199
LS GQ+ R A +LLH P++L LDEPT+GLD + + I + LKE G T+++T+H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
Query: 200 YI 201
Y+
Sbjct: 213 YM 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 7e-27
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 13 IIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---- 67
++EV++ +V + G ++ ++ V +I G++G SG GK+TL ++G
Sbjct: 5 LLEVENLTVEFATDG---GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPE 61
Query: 68 RNTLDAGTIKLSFRQI-------------SDIGYMPQE-LALHGEL-----SIRETFRYY 108
+ +G + L R + I + Q+ + + IRE R +
Sbjct: 62 GGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH 121
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVG---ALSGGQQRRISFAVSLLHNPKLLIL 165
G + + R+ E+L+ + LP ++ LSGG ++R+ A++L PKLLI
Sbjct: 122 G---KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIA 178
Query: 166 DEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTHYIE 202
DEPT LD I D LK+ G ++ TH +
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG 216
|
Length = 539 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 9e-27
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 13/190 (6%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K V+ ++L V +I GLLGP+G GKTT IVG D+G I L I+
Sbjct: 12 KSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKL 71
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYMF--DMTDDQIETRSKEILKLLELPP 134
IGY+PQE ++ +L++ + + D+ + + +L+ +
Sbjct: 72 PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
+LSGG++RR+ A +L NPK ++LDEP G+DPI I +K + G
Sbjct: 132 LRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 194 IIITTHYIEE 203
++IT H + E
Sbjct: 192 VLITDHNVRE 201
|
Length = 243 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-26
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 19/207 (9%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+ + V + K V+ L+L + + LLGPSGCGKTT+L I G T
Sbjct: 7 QPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP 66
Query: 72 DAGTIKLSFRQISDIGYMP----------QELALHGELSIRETFRYYGYMFDMTDDQIET 121
D+G I L + I+ + P Q AL +++ E + M +I
Sbjct: 67 DSGRIMLDGQDITHV---PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITP 123
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R E L++++L A++ LSGGQQ+R++ A ++++ PK+L+LDE LD L + +
Sbjct: 124 RVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183
Query: 181 WDRLKEMALN---GKTIIITTHYIEEA 204
+ LK AL G T + TH EEA
Sbjct: 184 QNELK--ALQRKLGITFVFVTHDQEEA 208
|
Length = 375 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 32/222 (14%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----------SFR 81
L LNL + ++ L+G SG GK+TLLN ++G G I++ ++R
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394
Query: 82 QISDIGYMPQE-LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK--- 137
+ I ++ Q G +IRE D +D++I + LLE P
Sbjct: 395 K--QISWVSQNPYLFAG--TIRENILLARP--DASDEEIIAALDQA-GLLEFVPKPDGLD 447
Query: 138 -IVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
++G LSGGQ +R++ A +LL LL+LDEPT LD QII L+E+A K
Sbjct: 448 TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-K 506
Query: 193 TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
T+++ TH +E+A A I ++ + GRLV E L E
Sbjct: 507 TVLVITHRLEDAADADRIVVLDN----GRLVEQGTHEELSEK 544
|
Length = 559 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-26
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE + V+ AY G L ++L++ + + L GPSG GKTTLL + G T
Sbjct: 1 MIEFHN---VSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS 55
Query: 73 AGTIKLSFRQISD------------IGYMPQELALHGELSIRE----TFRYYGYMFDMTD 116
G ++++ ++ IG + Q+ L + ++ E G +
Sbjct: 56 RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG----KKE 111
Query: 117 DQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+I+ R L+ + L A LSGG+Q+R++ A +++++P LL+ DEPT LDP
Sbjct: 112 REIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPD 171
Query: 176 LSQIIWDRLKEMALNGKTIIITTH 199
LS+ I D LK + G T+I+ TH
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 4e-26
Identities = 66/237 (27%), Positives = 114/237 (48%), Gaps = 31/237 (13%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++EV++ +++ Y KI L+G++L V +I LLG +G GKTTLL I+G
Sbjct: 2 PMLEVEN---LSAGYGKI---QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP 55
Query: 72 DAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+G I I+ I Y+P+ + L++ E Y E
Sbjct: 56 RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY----ARRDKEA 111
Query: 122 RSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ +++ ++ EL P + G LSGG+Q+ ++ A +L+ PKLL+LDEP+ GL P +
Sbjct: 112 QERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKI 171
Query: 177 SQIIWDRLKEMALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESL 231
+ I++ +KE+ G TI++ A + A ++ + GR+V L
Sbjct: 172 VEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN----GRIVLSGTAAEL 224
|
Length = 237 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-26
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 7 KRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66
KR+ ++E ++ V+ Y G ++LK L+ + ++GP+G GK+TLL +
Sbjct: 315 KRLGKLVLEFEN---VSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLA 369
Query: 67 GRNTLDAGTIKLSFRQISDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G +GT+K+ + IGY Q L + ++ E D E +
Sbjct: 370 GELGPLSGTVKV--GETVKIGYFDQHRDELDPDKTVLEELSEGF------PDGDEQEVRA 421
Query: 126 ILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
L +K VG LSGG++ R+ A LL P LL+LDEPT LD + +
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL--- 478
Query: 184 LKEMALN---GKTIIITTH 199
E AL G T+++ +H
Sbjct: 479 --EEALLDFEG-TVLLVSH 494
|
Length = 530 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-26
Identities = 63/202 (31%), Positives = 112/202 (55%), Gaps = 24/202 (11%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE+K+ ++ ++ G+ VLKG++L+V + ++ ++GPSG GK+TLL C+ G D
Sbjct: 2 MIEIKN---LSKSF---GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD 55
Query: 73 AGTI---------KLSFRQI-SDIGYMPQELALHGELSIRE--TFRYYGYM--FDMTDDQ 118
+G+I K ++ +G + Q+ L L++ E T + ++ +
Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVT---LAPVKVKKLSKAE 112
Query: 119 IETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
++ E+L+ + L A LSGGQQ+R++ A +L +PK+++ DEPT LDP L
Sbjct: 113 AREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELV 172
Query: 178 QIIWDRLKEMALNGKTIIITTH 199
+ D +K++A G T+II TH
Sbjct: 173 GEVLDVMKDLAEEGMTMIIVTH 194
|
Length = 240 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 66/210 (31%), Positives = 108/210 (51%), Gaps = 16/210 (7%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS----FRQ----ISDIG 87
+ ++ +P+ +I G LG +G GK+T L + G +G ++++ FR+ + IG
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIG 100
Query: 88 Y-MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGG 145
M Q+L L +L ++ ++++ DD+ R + ++L+L K V LS G
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG 160
Query: 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEE- 203
Q+ R A +LLH PK+L LDEPTVGLD I + LKE T+++TTH ++
Sbjct: 161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI 220
Query: 204 AKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
A + L+ DQ G+LV + L E
Sbjct: 221 ATLCDRVLLI--DQ--GQLVFDGTLAQLQE 246
|
Length = 325 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
V+ AY G L+ ++ VP + L+GPSG GK+TLLN ++G G+I ++
Sbjct: 326 GVSVAYP--GRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383
Query: 81 RQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++D I ++PQ L +I E R D +D +I + E L E
Sbjct: 384 VPLADADADSWRDQIAWVPQHPFLF-AGTIAENIRLA--RPDASDAEIR-EALERAGLDE 439
Query: 132 LPPA-----KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
A +G LSGGQ +R++ A + L + LL+LDEPT LD + +
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 183 RLKEMALNGKTIIITTHYIEEAKGA 207
L+ +A G+T+++ TH + A A
Sbjct: 500 ALRALA-QGRTVLLVTHRLALAALA 523
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 58/210 (27%), Positives = 94/210 (44%), Gaps = 39/210 (18%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ + G+ +L+ ++L + + GL+G +G GK+TLL + G D+G + +
Sbjct: 6 LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV--TRP 63
Query: 82 QISDIGYMPQELALHGELSIRETF------------RYYGYMFDMTDD------------ 117
+ +GY+ QE L E ++ + + D
Sbjct: 64 KGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALL 123
Query: 118 ------QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
+E R++E L L P + V +LSGG +RR++ A +LL P LL+LDEPT
Sbjct: 124 EELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNH 183
Query: 172 LDPILSQIIW--DRLKEMALNGKTIIITTH 199
LD L I W D LK G T+I+ +H
Sbjct: 184 LD--LESIEWLEDYLKR--YPG-TVIVVSH 208
|
Length = 530 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 3e-25
Identities = 58/193 (30%), Positives = 99/193 (51%), Gaps = 22/193 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFR 81
G +L L+L++P KI L+GP+GCGK+TLL C T +GT+ LS R
Sbjct: 13 GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSR 72
Query: 82 QIS-DIGYMPQELALHGELSIRETFRY--------YGYMFDMTDDQIETRSKEILKLLEL 132
Q++ + +PQ +++RE Y +G + D+ ++ E ++ L
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSA-EDNARVNQAMEQTRINHL 131
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNG 191
A + + LSGGQ++R A+ L + +++LDEPT LD I Q+ + ++E+ G
Sbjct: 132 --ADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-INHQVELMRLMRELNTQG 188
Query: 192 KTIIITTHYIEEA 204
KT++ H + +A
Sbjct: 189 KTVVTVLHDLNQA 201
|
Length = 255 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-25
Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 19/206 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE+++ V+ T G L ++L +P+ +I+G++G SG GK+TLL I
Sbjct: 1 MIELEN-VSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT 59
Query: 73 AGTIKLS--------------FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118
+G++ + RQ IG + Q L ++ E + + + +
Sbjct: 60 SGSVFVDGQDLTALSEAELRQLRQ--KIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAE 117
Query: 119 IETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
I+ R E+L+L+ L A + LSGGQ++R++ A +L +NPK+L+ DE T LDP +
Sbjct: 118 IKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 178 QIIWDRLKEM-ALNGKTIIITTHYIE 202
Q I + LK++ G TI++ TH +E
Sbjct: 178 QSILELLKDINRELGLTIVLITHEME 203
|
Length = 339 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 4e-25
Identities = 72/266 (27%), Positives = 123/266 (46%), Gaps = 35/266 (13%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSFR 81
K G L G++L V +++ LLG +G GK+TL+ + G D+G I ++F
Sbjct: 16 KSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFS 75
Query: 82 QISD-----IGYMPQELALHGELSI-------RETFRYYGYMFDMTDDQIETRSKEILKL 129
D I + QEL+L LS+ RE R +G + + R++E+L
Sbjct: 76 SPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR---KAMRRRARELLAR 132
Query: 130 LELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L L +VG LS Q++ + A +L + ++LILDEPT L ++ ++D ++ +
Sbjct: 133 LGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192
Query: 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG------RLVHHDIVESLV-EALEDALR 240
G II +H ++E A I ++RD + +G ++V +V LED
Sbjct: 193 AQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVGRELEDLFP 252
Query: 241 H------GNVINKVDLVDGRGSIDEV 260
G + +V + G G + +V
Sbjct: 253 EPPEEGIGEPVLEVRNLSGGGKVRDV 278
|
Length = 500 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-25
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 14/195 (7%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------IGYMPQELALHGELSIR 102
LLGPSGCGKTTLL + G D+G+I L +++ I + Q AL +++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161
E + M + +I+ R E L+L++L A + LSGGQQ+R++ A +L+ PK
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPK 120
Query: 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYI 219
+L+LDEP LD L + LK + G T + TH EEA + I +MR
Sbjct: 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRK---- 176
Query: 220 GRLVHHDIVESLVEA 234
G++ E + E
Sbjct: 177 GKIAQIGTPEEIYEE 191
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-24
Identities = 66/210 (31%), Positives = 106/210 (50%), Gaps = 18/210 (8%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K LK ++L V + +LGP+G GK+ LL I G D+G I L+ + I+
Sbjct: 7 SKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL 66
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL---ELPPAK 136
DI Y+PQ AL +++ + Y + +IE + EI ++L L K
Sbjct: 67 PPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRK 126
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTII 195
LSGG+Q+R++ A +L+ NPK+L+LDEP LD + + + LK++ G T++
Sbjct: 127 --PETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 196 ITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224
TH EEA A + +M + G+L+
Sbjct: 185 HVTHDFEEAWALADKVAIMLN----GKLIQ 210
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 3e-24
Identities = 60/241 (24%), Positives = 110/241 (45%), Gaps = 25/241 (10%)
Query: 9 IDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
I + + + + + +L L+ V + + ++GP+G GKTTLL+ + G
Sbjct: 21 KRHPIEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE 80
Query: 69 NTLDAGTIKLSFRQI----------SDIGYMPQELALH--GELSIRET-----FRYYGYM 111
+ +G + L R+ IG + EL ++R+ F G
Sbjct: 81 HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIY 140
Query: 112 FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+ + ++ +L+LL A + G+LS G+QRR+ A +L+ +P+LLILDEP
Sbjct: 141 QEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 171 GLDPILSQIIWDRLKEMA--LNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDI 227
GLD I + + +RL+E+A ++ TH+ EE + L+++ G +V
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKE----GEVVAQGK 256
Query: 228 V 228
+
Sbjct: 257 L 257
|
Length = 257 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 4e-24
Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 6/185 (3%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ + ++G LK ++ VP + GL+G +G GK+TLL + G D+GT+
Sbjct: 20 LKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV 79
Query: 77 KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
+ R S +G + EL+ RE G + ++ +I+ + EI++ EL
Sbjct: 80 TVRGRVSSLLGLG---GGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI 136
Query: 137 KI-VGALSGGQQRRISFAVSLLHNPKLLILDEPT-VGLDPILSQIIWDRLKEMALNGKTI 194
+ V S G + R++FA++ P +L++DE VG D + RL+E+ GKT+
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG-DAAFQEKCQRRLRELLKQGKTV 195
Query: 195 IITTH 199
I+ +H
Sbjct: 196 ILVSH 200
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 6e-24
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 26/219 (11%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI 83
G+ LK +NL++P+NK+ L+GPSGCGK+TLL C+ N L G + L + I
Sbjct: 17 YGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 84 SDIGYMPQELALH-G---------ELSIRETFRYYGYMFDMTDDQIETRSKEILK---LL 130
D EL G +SI + Y + + D +++ + LK L
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALW 136
Query: 131 ELPPAK--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ + K LSGGQQ+R+ A +L P++L++DEPT LDPI + I + + E+
Sbjct: 137 DEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK 196
Query: 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226
TI+I TH +++A + Y+G LV
Sbjct: 197 KK-YTIVIVTHNMQQAARVSDYTAFF----YLGELVEFG 230
|
Length = 253 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 6e-24
Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 12/167 (7%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ V + K+ G+ V L ++L++P ++ LLGPSG GKTTLL I G D+GTI
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 79 SFRQISD-------IGYMPQELALHGELSIRET----FRYYGYMFDMTDDQIETRSKEIL 127
+D +G++ Q AL +++ + R + +I + E+L
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELL 121
Query: 128 KLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
KL++L A + LSGGQ++R++ A +L PK+L+LDEP LD
Sbjct: 122 KLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 7e-24
Identities = 73/214 (34%), Positives = 111/214 (51%), Gaps = 24/214 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLN-------CIV 66
IE K+ V+ Y + +LKGL+L +P K L+G SGCGK+T+++
Sbjct: 1 IEFKN---VSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTS 57
Query: 67 GRNTLDAGTIK-LSFRQISD-IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G LD I+ L+ R + IG + QE L + +I E RY G D TD+++E +K
Sbjct: 58 GEILLDGVDIRDLNLRWLRSQIGLVSQEPVLF-DGTIAENIRY-G-KPDATDEEVEEAAK 114
Query: 125 --EILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
I + P +VG LSGGQ++RI+ A +LL NPK+L+LDE T LD
Sbjct: 115 KANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+++ + L A+ G+T I+ H + + A I
Sbjct: 175 EKLVQEALDR-AMKGRTTIVIAHRLSTIRNADLI 207
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 2e-23
Identities = 64/198 (32%), Positives = 104/198 (52%), Gaps = 11/198 (5%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K+ V + + K+ G++ V+ LNL + + + LLGPSGCGKTT+L + G G I
Sbjct: 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 77 --------KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
S +Q DI + Q AL +S+ E Y M + ++ + R KE L+
Sbjct: 64 FIDGEDVTHRSIQQ-RDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALE 122
Query: 129 LLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L++L + V +SGGQQ+R++ A +L+ PK+L+ DEP LD L + + ++++E+
Sbjct: 123 LVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIREL 182
Query: 188 ALN-GKTIIITTHYIEEA 204
T + TH EA
Sbjct: 183 QQQFNITSLYVTHDQSEA 200
|
Length = 351 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 2e-23
Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 28/199 (14%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K+ G + ++L V +I GL+GP+G GKTTL N I G +GT+ R I+
Sbjct: 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL 71
Query: 86 ---------IGYMPQ--------------ELALHGELSIRETFRYYGYMFDMTDDQIETR 122
I Q + H L + + + R
Sbjct: 72 PPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEE--REARER 129
Query: 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
++E+L+ + L A + G LS GQQRR+ A +L PKLL+LDEP GL+P ++ +
Sbjct: 130 ARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA 189
Query: 182 DRLKEMALN-GKTIIITTH 199
+ ++E+ G TI++ H
Sbjct: 190 ELIRELRDRGGVTILLIEH 208
|
Length = 250 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 2e-23
Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---FRQISD--- 85
LK NL + + + +LG SG GK+TLL + G G+I L+ + +
Sbjct: 351 TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410
Query: 86 ---IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA- 141
I + Q + L ++R+ R D +D+++ L+ + L K + A
Sbjct: 411 RETISVLTQRVHLFSG-TLRDNLRLANP--DASDEEL----WAALQQVGL--EKLLESAP 461
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
LSGG++RR++ A +LLH+ L +LDEPT GLDPI + + L E A
Sbjct: 462 DGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA 521
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHH 225
GKT+++ TH + + I ++ + + I H
Sbjct: 522 -EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHA 557
|
Length = 573 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-23
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 23/223 (10%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ + + K+ G L ++L++ ++ LLGPSG GK+TLL I G T DAG I+L
Sbjct: 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 79 SFRQISD----------IGYMPQELALHGELSIRE--TF--RYYGYMFDMTDDQIETRSK 124
+ R + D +G++ Q AL +++ + F + + +I R +
Sbjct: 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPS--EAEIRARVE 119
Query: 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+L+L++L A + LSGGQ++R++ A +L PK+L+LDEP LD + + +
Sbjct: 120 ELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRW 179
Query: 184 LKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVH 224
L+++ G T + TH EEA + A + ++ GR+
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ----GRIEQ 218
|
Length = 345 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 3e-23
Identities = 64/207 (30%), Positives = 108/207 (52%), Gaps = 22/207 (10%)
Query: 13 IIEVKHSVAVTSAYK-KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+IE+K+ V+ + G LK ++L+VP+ +I+G++G SG GK+TL+ CI G
Sbjct: 1 MIELKN---VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP 57
Query: 72 DAGTIKLSFRQISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
+G++ + ++ IG + Q L ++ E + + +I
Sbjct: 58 TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI 117
Query: 120 ETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
E R E+L+L+ L A LSGGQ++R+ A +L +NPK+L+ DE T LDP +Q
Sbjct: 118 EERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 179 IIWDRLKEMALN---GKTIIITTHYIE 202
I L++ +N G TI++ TH +E
Sbjct: 178 SILALLRD--INRELGLTIVLITHEME 202
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 4e-23
Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 35/195 (17%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLKGLN ++ LLG +G GK+TLL + G +G + + +
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD--------- 57
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQI-----------------------ETRSKEILKLL 130
+ + E + G +F DDQ+ E R +E L +
Sbjct: 58 --YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAV 115
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
++ LSGG+++R++ A ++ P +L+LDEPT GLDP + + L+ +
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 190 NGKTIIITTHYIEEA 204
G T++I+TH ++ A
Sbjct: 176 EGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.6 bits (235), Expect = 5e-23
Identities = 66/191 (34%), Positives = 103/191 (53%), Gaps = 15/191 (7%)
Query: 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS 84
AYK G VV + ++L V +I GLLGP+G GKTT +VG DAG I + IS
Sbjct: 12 AYK--GRRVV-EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68
Query: 85 ----------DIGYMPQELALHGELSIRETFR-YYGYMFDMTDDQIETRSKEILKLLELP 133
IGY+PQE ++ LS+ + D++ +Q E R+ E+++ +
Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE 128
Query: 134 PAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
+ +G +LSGG++RR+ A +L NPK ++LDEP G+DPI I ++ + +G
Sbjct: 129 HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 193 TIIITTHYIEE 203
++IT H + E
Sbjct: 189 GVLITDHNVRE 199
|
Length = 241 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 5e-23
Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
G H L + L+ PE + LLGPSG GK++LL + +GT+ ++
Sbjct: 13 GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 84 ---------SDIGYMPQELALHGELSIRETF-----RYYGYMFDMTDDQIETRSKEILKL 129
++G + Q+ L L+++E R G ++ DQ R++++LK
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG----LSKDQALARAEKLLKR 128
Query: 130 LELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L L P A + LSGGQQ+R++ A +L+ P++L+ DEPT LDP ++ I +KE+A
Sbjct: 129 LRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 189 LNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRH 241
G T +I TH +E A K A + M + + + E EA ++ L H
Sbjct: 189 ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAFKNYLSH 242
|
Length = 242 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 8e-23
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 29/206 (14%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+ LK +NL VP+ ++ ++GP G GK++LL+ ++G +G++ + I
Sbjct: 13 GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP----GSI 68
Query: 87 GYMPQELALHGELSIRE--TFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--K 136
Y+ QE + +IRE F G FD E R ++++K LE+ P
Sbjct: 69 AYVSQEPWIQNG-TIRENILF---GKPFD------EERYEKVIKACALEPDLEILPDGDL 118
Query: 137 KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR-LKEMALNG 191
+G LSGGQ++RIS A ++ + + +LD+P +D + + I++ + + LN
Sbjct: 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNN 178
Query: 192 KTIIITTHYIEEAKGAHNIGLMRDDQ 217
KT I+ TH ++ A I ++ + +
Sbjct: 179 KTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 1e-22
Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 9/194 (4%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + + K+ G+ L +NL VP + LLGPSG GK+TLL I G D+G I+L+
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 80 FRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
+ + IG++ Q AL L++R+ + + +I+ R +E+L+L++L
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
+ LSGGQ++R++ A +L P++L+LDEP LD + + + L+++
Sbjct: 121 EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEV 180
Query: 192 K-TIIITTHYIEEA 204
T + TH EEA
Sbjct: 181 HVTTVFVTHDQEEA 194
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 1e-22
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 15/191 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI----- 76
V+ AY G L+ ++ ++P+ + L GPSG GK+TLL I G G I
Sbjct: 7 VSKAYP--GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH 64
Query: 77 ---KLSFRQIS----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
+L R+I IG + Q+ L + ++ E + +I R E+L L
Sbjct: 65 DLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDL 124
Query: 130 LELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L A+ + LSGG+Q+R++ A ++++ P +L+ DEPT LDP LS I +E+
Sbjct: 125 VGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 189 LNGKTIIITTH 199
G T+++ TH
Sbjct: 185 RLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-22
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 30/187 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
VL+ ++ ++ + ++GPSG GK+TL I+G +G ++L IS
Sbjct: 13 AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWD-- 70
Query: 90 PQELALHGELSIRETFR-YYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQR 148
+ GY+ DD+ L A+ I LSGGQ++
Sbjct: 71 ------------PNELGDHVGYL--PQDDE----------LFSGSIAENI---LSGGQRQ 103
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAH 208
R+ A +L NP++L+LDEP LD + + + + G T I+ H E A
Sbjct: 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASAD 163
Query: 209 NIGLMRD 215
I ++ D
Sbjct: 164 RILVLED 170
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 7e-22
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 16/150 (10%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------------ 85
+ +P + + G SG GKTTL+ I G D G I L+ R + D
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALS 143
IGY+ QE L LS+R R YG ++ + +++LL + ++ G LS
Sbjct: 76 RIGYVFQEARLFPHLSVRGNLR-YGMKRARPSER-RISFERVIELLGIGHLLGRLPGRLS 133
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
GG+++R++ +LL +P+LL++DEP LD
Sbjct: 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 1e-21
Identities = 59/177 (33%), Positives = 99/177 (55%), Gaps = 6/177 (3%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYM 89
L+ ++L + ++ +LGPSGCGKTTLLN I G T G+I+L+ R+I ++ G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQR 148
Q AL L++ + + + + Q + ++L L+ L A K + LSGG ++
Sbjct: 80 FQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQ 139
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEA 204
R+ A +L P+LL+LDEP LD + + + + L ++ GK +++ TH IEEA
Sbjct: 140 RVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA 196
|
Length = 259 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-21
Identities = 61/197 (30%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------- 76
K G VL ++LN+ + ++ ++GPSG GK+TLL CI + +G +
Sbjct: 9 KHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDP 68
Query: 77 KLSFRQI-SDIGYMPQELALHGELSIRETFRYYGYMF------DMTDDQIETRSKEILKL 129
K+ R I + G + Q+ L L+ E MF + ++ E +++E+L
Sbjct: 69 KVDERLIRQEAGMVFQQFYLFPHLTALENV-----MFGPLRVRGASKEEAEKQARELLAK 123
Query: 130 LELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L A LSGGQQ+R++ A +L PKL++ DEPT LDP L + ++++A
Sbjct: 124 VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA 183
Query: 189 LNGKTIIITTHYIEEAK 205
G T++I TH I A+
Sbjct: 184 EEGMTMVIVTHEIGFAE 200
|
Length = 240 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.9 bits (226), Expect = 1e-21
Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----DIGYM 89
L+ +NL + ++ +LGPSGCGKTTLLN I G G+I L + + + G +
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVV 75
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQR 148
Q L ++++ + + + Q + ++LK + L A K+ + LSGGQ++
Sbjct: 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQ 135
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-----NGKTIIITTHYIEE 203
R+ A +L NP+LL+LDEP LD ++++ + L GK +++ TH IEE
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTR----EQMQTLLLKLWQETGKQVLLITHDIEE 191
Query: 204 A 204
A
Sbjct: 192 A 192
|
Length = 255 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-21
Identities = 55/197 (27%), Positives = 85/197 (43%), Gaps = 43/197 (21%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----- 85
VLK L+L + + + LLG SG GK+TLL + G G I L +SD
Sbjct: 14 EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKAL 73
Query: 86 ---IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGAL 142
I + Q Y+FD T + L
Sbjct: 74 SSLISVLNQRP----------------YLFDTT----------LRNNLGRR--------F 99
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
SGG+++R++ A LL + +++LDEPTVGLDPI + + + E+ L KT+I TH++
Sbjct: 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLT 158
Query: 203 EAKGAHNIGLMRDDQYI 219
+ I + + + I
Sbjct: 159 GIEHMDKILFLENGKII 175
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 94.3 bits (234), Expect = 2e-21
Identities = 55/178 (30%), Positives = 98/178 (55%), Gaps = 9/178 (5%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS----FRQISDI----GYM 89
L + V + +GLLG +G GKTT + G T+ +G ++ ISD+ GY
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYC 2017
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQR 148
PQ A+ L+ RE Y + + ++IE + ++ L L A ++ G SGG +R
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKR 2077
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
++S A++L+ P L++LDEPT G+DP +++W+ + + G+ +++T+H +EE +
Sbjct: 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEA 2135
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-21
Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 16/205 (7%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC-------------IVGRNTLDA 73
KK G + +L + + +I+ ++G SG GK+T + I G N +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
++L + IG + Q+ AL ++I + + + + + ++ E+LKL+ L
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE 120
Query: 134 P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-G 191
+ LSGG Q+R+ A +L P +L++DE LDP++ + D LK++
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRD 215
KTI+ TH ++EA + I +M+
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKA 205
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-21
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 4/190 (2%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
K + +K+ LK ++ + + + G++G +G GK+TLL I G +G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 77 KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
K++ + I EL+ RE G + +T +I+ + EI++ EL
Sbjct: 85 KVTGKVAPLIELG---AGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI 141
Query: 137 KI-VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
V S G R++F+V+ P +L+LDE D + +RL E+ KTI+
Sbjct: 142 DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 196 ITTHYIEEAK 205
+ +H + K
Sbjct: 202 LVSHDLGAIK 211
|
Length = 249 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-21
Identities = 57/191 (29%), Positives = 100/191 (52%), Gaps = 15/191 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
VT Y L G+N+++ + L+GPSG GK+TLL I +GTI+++ +
Sbjct: 6 VTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQ 63
Query: 82 QISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
+SD IG + Q+ L + ++ E + + + +I R L+L
Sbjct: 64 DVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123
Query: 130 LELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L + + A LSGG+Q+R++ A +++++P +LI DEPT LDP + I + LK++
Sbjct: 124 VGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183
Query: 189 LNGKTIIITTH 199
G T+++ TH
Sbjct: 184 KAGTTVVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 3e-21
Identities = 48/173 (27%), Positives = 68/173 (39%), Gaps = 55/173 (31%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
K G ++LK ++L + GL+G +G GK+TLL I G D G + I
Sbjct: 8 KTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG--STVKI 65
Query: 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ 146
GY Q LSGG+
Sbjct: 66 GYFEQ--------------------------------------------------LSGGE 75
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ R++ A LL NP LL+LDEPT LD + + + LKE G T+I+ +H
Sbjct: 76 KMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPG-TVILVSH 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 4e-21
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 40/217 (18%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-------------SF 80
+ ++ ++ E + GL+G SG GK+TL + G +G+I
Sbjct: 306 AVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRL 365
Query: 81 RQISDIGYMPQELALHGELSIR----ETFRYYGYMFDMTDDQIETRSKEILKLLELPP-- 134
R+ + + +L+ +++ E R +G + + R E+L+L+ LPP
Sbjct: 366 RRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG---GGSGAERRARVAELLELVGLPPEF 422
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDRLKEM-ALNGK 192
+ LSGGQ++R++ A +L PKLLILDEP LD + +Q++ + LK++ G
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVL-NLLKDLQEELGL 481
Query: 193 TIIITTH------YIEEAKGAHNIGLMRDDQYIGRLV 223
T + +H YI A + +M D GR+V
Sbjct: 482 TYLFISHDLAVVRYI-----ADRVAVMYD----GRIV 509
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 8e-21
Identities = 56/219 (25%), Positives = 98/219 (44%), Gaps = 39/219 (17%)
Query: 12 EIIEVKHSV---AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
++EVK+ V + K + G++ ++ E + GL+G SGCGK+TL I+G
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 69 NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
+G I + I+ ++ ++ R E+L+
Sbjct: 63 EEPTSGEILFEGKDITK----------------------------LSKEERRERVLELLE 94
Query: 129 LLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+ LP + LSGGQ++RI A +L NPKL++ DEP LD + I + LK+
Sbjct: 95 KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD 154
Query: 187 M-ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
+ G T + +H + + + I +M Y+G++V
Sbjct: 155 LQEELGLTYLFISHDLSVVRYISDRIAVM----YLGKIV 189
|
Length = 268 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 9e-21
Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 25/183 (13%)
Query: 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL----SFRQISDIGYMPQ--EL 93
L+ + ++ GLLGP+G GKTTLL I+G GT+K+ + IGY+PQ E
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 94 ALHGELSIRETF-----RYYGYM-------FDMTDDQIETRSKEILKLLELPPAKKIVGA 141
A +S+ T + G++ F D + + L EL A + VG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRR-----VGLTEL--ADRPVGE 113
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQ++R+ A +L P +L+LDEP GLD +++ + E+A G I++TTH +
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 202 EEA 204
+A
Sbjct: 174 AQA 176
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 9e-21
Identities = 57/190 (30%), Positives = 94/190 (49%), Gaps = 31/190 (16%)
Query: 32 HVVLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS--- 84
L ++L + P K+ ++G G GK+TLL ++G G++ L RQI
Sbjct: 478 TPALDNVSLTIRPGEKV-AIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPAD 536
Query: 85 ---DIGYMPQELAL-HGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPPAKK- 137
+IGY+PQ+ L +G ++R+ DD+ R+ E+ + E
Sbjct: 537 LRRNIGYVPQDPRLFYG--TLRDNI-----ALGAPYADDEEILRAAELAGVTEFVRRHPD 589
Query: 138 ----IVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+G +LSGGQ++ ++ A +LL +P +L+LDEPT +D + DRLK L
Sbjct: 590 GLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR-WL 648
Query: 190 NGKTIIITTH 199
GKT+++ TH
Sbjct: 649 AGKTLVLVTH 658
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 1e-20
Identities = 60/190 (31%), Positives = 100/190 (52%), Gaps = 19/190 (10%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQIS 84
K V+L ++ V + L+G SG GKTTLLN + R T + G ++ R +
Sbjct: 772 KKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 85 D-----IGYMPQELALH-GELSIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPP- 134
IGY+ Q+ LH ++RE+ R+ Y+ ++ + +E++KLLE+
Sbjct: 832 SSFQRSIGYVQQQ-DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY 890
Query: 135 AKKIVG----ALSGGQQRRISFAVSLLHNPKLLI-LDEPTVGLDPILSQIIWDRLKEMAL 189
A +VG L+ Q++R++ V L+ PKLL+ LDEPT GLD + I ++++A
Sbjct: 891 ADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD 950
Query: 190 NGKTIIITTH 199
+G+ I+ T H
Sbjct: 951 HGQAILCTIH 960
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 1e-20
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 59 TTLLNCIVGRNTLDAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYY 108
+TLL I G +GTI L + IG + Q+ L EL++RE +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF- 59
Query: 109 GYMFDMTDDQIETRSKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
G D + E E L+ + LP ++ VG LSGGQ++R++ A +LL PKLL+LD
Sbjct: 60 GLRDKEADARAE----EALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLD 115
Query: 167 EPT 169
EPT
Sbjct: 116 EPT 118
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 1e-20
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 15/181 (8%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84
VL +NL + +I L GPSG GKTTLL I G ++ G++K+ +++
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 85 ---DIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-AKKIV 139
+IGY+ Q L G L+ R+ + + ++ + R++ +L+ + L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITT 198
LSGGQ++R++ A +L+H PKL++ DEPT LD + + + ++++A G TI+I T
Sbjct: 140 HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVT 199
Query: 199 H 199
H
Sbjct: 200 H 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 2e-20
Identities = 55/176 (31%), Positives = 97/176 (55%), Gaps = 10/176 (5%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89
LN+ EN+I LG +G GKTT L+ + G +GT+ + + I +G
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMC 1008
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK-KIVGALSGGQQR 148
PQ L L++ E +Y + + ++ + + +L+ L + + LSGG QR
Sbjct: 1009 PQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQR 1068
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
++S A++ + + K+++LDEPT G+DP + IWD L + +G+TII++TH+++EA
Sbjct: 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEA 1123
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 2e-20
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 33/201 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC-------------IVGR-----NTL 71
G H L + L+ P+ + LLGPSG GK++LL I G T
Sbjct: 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTP 72
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETF-----RYYGYMFDMTDDQIETRSKEI 126
I R+ ++G + Q+ L L++++ R G ++ DQ R++++
Sbjct: 73 SDKAI-RELRR--NVGMVFQQYNLWPHLTVQQNLIEAPCRVLG----LSKDQALARAEKL 125
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDRL 184
L+ L L P A + LSGGQQ+R++ A +L+ P++L+ DEPT LDP I +QI+ +
Sbjct: 126 LERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIV-SII 184
Query: 185 KEMALNGKTIIITTHYIEEAK 205
+E+A G T +I TH +E A+
Sbjct: 185 RELAETGITQVIVTHEVEVAR 205
|
Length = 242 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 3e-20
Identities = 62/203 (30%), Positives = 104/203 (51%), Gaps = 31/203 (15%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ Y G +L+G++L VP+ ++ +LG +G GKTTLL ++G + +G+I+L
Sbjct: 6 LNVYY---GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK-LL 130
I+ I Y+PQ + L++ E + RS++I +
Sbjct: 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLL-------TGLAALPRRSRKIPDEIY 115
Query: 131 ELPPAKKIV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQI--IWD 182
EL P K + G LSGGQQ++++ A +L+ PKLL+LDEPT G+ P I+ I +
Sbjct: 116 ELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIR 175
Query: 183 RLKEMALNGKTIIITTHYIEEAK 205
RL+ G I++ Y++ A+
Sbjct: 176 RLRAEG--GMAILLVEQYLDFAR 196
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-20
Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 20/216 (9%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS- 84
KK G V + +L+V E +I+ ++G SG GK+TL+ + G I + + I+
Sbjct: 35 LKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK 94
Query: 85 ------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
I + Q AL ++ E + + + + E R+ E L+L+ L
Sbjct: 95 LSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGL 154
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
A K LSGG Q+R+ A +L ++P +L++DE LDP++ + D L E+
Sbjct: 155 EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 191 GKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHH 225
KTI+ TH ++EA + I +M+D G +V
Sbjct: 215 KKTIVFITHDLDEALRIGDRIAIMKD----GEIVQV 246
|
Length = 386 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-20
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 41/202 (20%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ + K+ G L G++L+V +++ LLG +G GK+TL+ + G D+G I +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVD 60
Query: 80 FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+++S P++ G I V
Sbjct: 61 GKEVS--FASPRDARRAG---------------------IAM-----------------V 80
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS G+++ + A +L N +LLILDEPT L P + ++ ++ + G +I +H
Sbjct: 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Query: 200 YIEEAKG-AHNIGLMRDDQYIG 220
++E A + ++RD + +G
Sbjct: 141 RLDEVFEIADRVTVLRDGRVVG 162
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 4e-20
Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 30/216 (13%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE ++ V+ +Y G VLK ++ ++ + ++GPSG GK+TL+ ++ +
Sbjct: 329 IEFEN---VSFSYP--GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383
Query: 74 GTIKLSFRQISD---------IGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRS 123
G I + I D IG + Q+ L G +IRE D TD++IE +
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG--TIRENIALG--RPDATDEEIE-EA 438
Query: 124 KEILKLLELPPAKK-----IVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
++ E IVG LSGGQ++R++ A +LL NP +LILDE T LD
Sbjct: 439 LKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+I D LK++ L G+T +I H + K A I
Sbjct: 499 ETEALIQDALKKL-LKGRTTLIIAHRLSTIKNADRI 533
|
Length = 567 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 6e-20
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 17/221 (7%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA--GTIKLSFRQIS--- 84
G + VL L+L + ++ L+G SGCGKTTLL I G G I ++ R ++
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 85 ----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIV 139
+ + Q AL L + + + M I R + LKL+ L A +
Sbjct: 76 PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP 135
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM--ALNGKTIIIT 197
LSGG Q+RI+ A ++ P +L+LDEP LD + + + + + L TI+
Sbjct: 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCV 195
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
TH ++A A G+M+D GRL H ++L +A D
Sbjct: 196 THDQDDALTLADKAGIMKD----GRLAAHGEPQALYDAPAD 232
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.4 bits (219), Expect = 6e-20
Identities = 66/204 (32%), Positives = 102/204 (50%), Gaps = 19/204 (9%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G H V ++L + + +I+ LLG SGCGK+TLL + G AG I L +S
Sbjct: 31 GQHAV-DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY 89
Query: 86 ---IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA 141
I M Q AL +++ + + + +I +R E+L L+ + AK+
Sbjct: 90 QRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ 149
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-----GKTIII 196
LSGGQ++R++ A SL PKLL+LDEP LD L DR++ ++ G T ++
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLR----DRMQLEVVDILERVGVTCVM 205
Query: 197 TTHYIEEAKG-AHNIGLMRDDQYI 219
TH EEA A I +M +++
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFV 229
|
Length = 377 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 6e-20
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 28/228 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G+ + +K + L++P+N+I +GPSGCGK+T+L C N L G + + +
Sbjct: 21 GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLY 80
Query: 85 DIGYMPQELALHGEL----------SIRETFRY----YGYMFDMTDDQIETRSKEILKLL 130
P E+ + SI + Y GY DM D+ +E ++
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDM-DELVERSLRQAALWD 139
Query: 131 ELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
E+ K G +LSGGQQ+R+ A ++ P+++++DEP LDPI + I + + E+
Sbjct: 140 EVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK- 198
Query: 190 NGKTIIITTHYIEEAK------GAHNIGLMRDDQYIGRLVHHDIVESL 231
TIII TH +++A N+ L G LV D E +
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246
|
Length = 264 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 6e-20
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ ++ + K+ V ++L+V + +I+ LLG +G GK+TL+ + G D+G I
Sbjct: 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 77 -----KLSFRQISD-----IGYMPQELALHGELSIRETF-----RYYGYMFDMTDDQIET 121
++ + D IG + Q L L++ E G + D Q
Sbjct: 62 RVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDR--RQARA 119
Query: 122 RSKEILKL--LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
R KE+ + L + P V LS G+Q+R+ +L +LLILDEPT L P +
Sbjct: 120 RIKELSERYGLPVDP-DAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178
Query: 180 IWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222
+++ L+ +A GKTII TH ++E A + ++R + +G +
Sbjct: 179 LFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222
|
Length = 501 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 6e-20
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 33/229 (14%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------------VGRNTL 71
G LK +NL++P+N++ L+GPSGCGK+TLL + G++
Sbjct: 12 GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIY 71
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLL 130
D + R+ +G + Q+ +SI + Y + + D +++ +E LK
Sbjct: 72 DKKIDVVELRR--RVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA 128
Query: 131 ELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
L LSGGQQ+R+ A +L P++L+LDEPT LDPI + I + ++
Sbjct: 129 ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQ 188
Query: 186 EMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
E+ TI+I TH +++A + D G LV + E +
Sbjct: 189 ELKKK-YTIVIVTHNMQQAARISDRTAFFYD----GELVEYGPTEQIFT 232
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 89.2 bits (221), Expect = 7e-20
Identities = 64/200 (32%), Positives = 100/200 (50%), Gaps = 20/200 (10%)
Query: 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR---NTLDAG 74
H ++ ++I +L G+ +I +LGPSG GK+TLLN + GR N G
Sbjct: 67 HKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF-TG 125
Query: 75 TIKLSFRQISD-----IGYMPQELALHGELSIRETFRYYGYMF--DMTDDQIETRSKEIL 127
TI + R+ + G++ Q+ L+ L++RET + + Q + E +
Sbjct: 126 TILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESV 185
Query: 128 KLLELPPAK---KIVG-----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
+ EL K I+G +SGG+++R+S A +L NP LLILDEPT GLD +
Sbjct: 186 -ISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYR 244
Query: 180 IWDRLKEMALNGKTIIITTH 199
+ L +A GKTI+ + H
Sbjct: 245 LVLTLGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFRQISD-----IGYMP---QEL 93
I GL+G G+T L + G +G I L R D I Y+P +
Sbjct: 290 IAGLVG---AGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSE 346
Query: 94 ALHGELSIRETF------RYYGYMFDMTDDQIETR-SKEILKLLEL--PPAKKIVGALSG 144
L ++SI E R+ D + E ++ ++ L + P ++ +G LSG
Sbjct: 347 GLVLDMSIAENITLASLRRFSRRGL--IDRRKERALAERYIRRLRIKTPSPEQPIGTLSG 404
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
G Q+++ A L +PK+LILDEPT G+D I+ ++E+A GK I++ + + E
Sbjct: 405 GNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464
Query: 205 KG-AHNIGLMRDDQYIGRLVHHDI-VESLVEAL 235
G + I +MR+ + +G L + E+++ A
Sbjct: 465 LGLSDRILVMREGRIVGELDREEATEEAIMAAA 497
|
Length = 500 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 2e-19
Identities = 57/178 (32%), Positives = 97/178 (54%), Gaps = 8/178 (4%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG----YMP 90
LKG+NL + + + L+G SGCGK+TLLN I G +G + L +QI++ G +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 91 QELALHGELSIRETFRYY--GYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGGQQ 147
Q +L L++RE + D++ + +E + L+ L A K G LSGG +
Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEA 204
+R++ A +L PK+L+LDEP LD + + + L ++ + T+++ TH ++EA
Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEA 178
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-19
Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
VLK +N ++ + ++GP+G GKTTL+N ++ G I + I D
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK 73
Query: 86 -----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPPAKKIV 139
IG + Q+ L +I E R + + + LP V
Sbjct: 74 SLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132
Query: 140 -----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
G LS G+++ ++ A ++L +PK+LILDE T +D ++I + L+++ + G+T
Sbjct: 133 LGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL-MKGRTS 191
Query: 195 IITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
II H + K A I ++ D G+++
Sbjct: 192 IIIAHRLSTIKNADKILVLDD----GKII 216
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 5e-19
Identities = 64/222 (28%), Positives = 102/222 (45%), Gaps = 30/222 (13%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG----RNTLDAGTIKLS-------F 80
+ LN +P + L+GPSG GKT+LLN ++G + +L I+L
Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWR 422
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE-----TRSKEILKLLEL--- 132
+ +S +G PQ HG ++R+ D +D+Q++ E L LL
Sbjct: 423 KHLSWVGQNPQ--LPHG--TLRDNVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLD 476
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
P LS GQ +R++ A +LL +LL+LDEPT LD Q++ L A +
Sbjct: 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQ 535
Query: 193 TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
T ++ TH +E+ I +M+D G++V L +A
Sbjct: 536 TTLMVTHQLEDLAQWDQIWVMQD----GQIVQQGDYAELSQA 573
|
Length = 588 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 5e-19
Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 25/212 (11%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFRQIS-- 84
L ++L+VP +IYG++G SG GK+TL+ C+ +G++ LS +++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 85 --DIGYMPQELALHGELSIRETFRYYGYMFDMTD---DQIETRSKEILKLLELPPAKKIV 139
IG + Q L LS R F ++ + D+I+ + E+L L+ L
Sbjct: 81 RRQIGMIFQHFNL---LSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY 137
Query: 140 GA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIIT 197
+ LSGGQ++R++ A +L NPK+L+ DE T LDP +Q I + LKE+ G TI++
Sbjct: 138 PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLI 197
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228
TH ++ K + ++ + G L+ V
Sbjct: 198 THEMDVVKRICDCVAVISN----GELIEQGTV 225
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-19
Identities = 59/214 (27%), Positives = 106/214 (49%), Gaps = 23/214 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
VL+ ++L++P + L+GPSG GK+TL+N I +D+G I + + D
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRR 76
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE----LPPA-KKIV 139
IG + Q++ L + ++ E Y T +++E + E LP ++
Sbjct: 77 QIGLVSQDVFLFND-TVAENIAYG--RPGATREEVE-EAARAANAHEFIMELPEGYDTVI 132
Query: 140 G----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G LSGGQ++RI+ A +LL +P +LILDE T LD +++ L+ + N +T
Sbjct: 133 GERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKN-RTTF 191
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ H + + A I ++ D + + R H +++
Sbjct: 192 VIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 7e-19
Identities = 63/211 (29%), Positives = 94/211 (44%), Gaps = 40/211 (18%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
I+E + Y LKG+N + ++ LLGP+G GK+TL G
Sbjct: 1 ILETRDLK-----YSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT 55
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI------------- 119
+G + + I Y + L L +R+T G +F DDQ+
Sbjct: 56 SGEVLIKGEPIK---YDKKSL-----LEVRKTV---GIVFQNPDDQLFAPTVEEDVAFGP 104
Query: 120 ----------ETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
E R KE LK + + K LSGGQ++R++ A L P++++LDEP
Sbjct: 105 LNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
T GLDP+ + I L ++ G TIII+TH
Sbjct: 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTH 195
|
Length = 275 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 8e-19
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 11/178 (6%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
G ++ +GL+ + + + GP+G GKTTLL + G D+G ++ + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDE 70
Query: 90 PQEL--------ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA 141
P L ELS E ++ + IE + + L
Sbjct: 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED-ALAAVGLTGF--EDLPAAQ 127
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS GQQRR++ A L L ILDEPT LD ++ L+ G +++TTH
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 1e-18
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 45/215 (20%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEVK+ V KK VL G++L V ++ ++GPSG GKTTLL CI +A
Sbjct: 4 IEVKNLV------KKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA 57
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD-------------------- 113
GTI++ I + Q+ L IR+ ++ G++F
Sbjct: 58 GTIRVGDITIDTARSLSQQKGL-----IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI 112
Query: 114 ---MTDDQIETRSKEILKLLELP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
++ R++E+L + L P + LSGGQQ+R++ A +L P++++
Sbjct: 113 VKGEPKEEATARARELLAKVGLAGKETSYPRR-----LSGGQQQRVAIARALAMRPEVIL 167
Query: 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
DEPT LDP L + + ++++A +T++I TH
Sbjct: 168 FDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTH 202
|
Length = 250 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 64/191 (33%), Positives = 94/191 (49%), Gaps = 30/191 (15%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISD--- 85
VLKGL+L + + LLG +GCGK+TLL + R G I L+ + I+D
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSE 409
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL------KLLELP 133
I + Q + L ++R+ + +D+ + E+L KLLE
Sbjct: 410 AALRQAISVVSQRVHLFSA-TLRDNLLLAA--PNASDEAL----IEVLQQVGLEKLLEDD 462
Query: 134 -PAKKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+G LSGG+QRR+ A +LLH+ LL+LDEPT GLD + I + L E A
Sbjct: 463 KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522
Query: 189 LNGKTIIITTH 199
N KT+++ TH
Sbjct: 523 QN-KTVLMITH 532
|
Length = 574 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 2e-18
Identities = 56/211 (26%), Positives = 103/211 (48%), Gaps = 25/211 (11%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
+ V +K+ G H VLKG++L + ++G SG GK+T L CI G+I ++
Sbjct: 6 LNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVN 65
Query: 80 FRQISDIGYMPQELALHGELSIR----------ETFRYYGYMFDMTD-----------DQ 118
+ I+ + +L + + +R + F + +M + + +
Sbjct: 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 125
Query: 119 IETRSKEILKLLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
E R + + L ++ ++ G LSGGQQ+R+S A +L P++L+ DEPT LDP
Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP 185
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
L + ++++A GKT+++ TH + A+
Sbjct: 186 ELVGEVLRIMQQLAEEGKTMVVVTHEMGFAR 216
|
Length = 257 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-18
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 46/213 (21%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IIEV+ K G LKGL+L++PE LLGP+G GK+TLL + G
Sbjct: 4 IIEVED----LHFRYKDGTKA-LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ 58
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI------------- 119
G +K+ R+++ + + G +F DDQ+
Sbjct: 59 RGRVKVMGREVN-------------AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGP 105
Query: 120 ---ETRSKEILKLLELPPAKKIVGA----------LSGGQQRRISFAVSLLHNPKLLILD 166
E+ + +E A K V LS GQ++R++ A L +P +++LD
Sbjct: 106 VNMGLDKDEVERRVE--EALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
EP LDP + + + L + GKT+I+ TH
Sbjct: 164 EPMAYLDPRGQETLMEILDRLHNQGKTVIVATH 196
|
Length = 274 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 23/188 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G VL G++L++P + +LGPSG GK+TLL + G G + L +S
Sbjct: 346 GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQD 405
Query: 86 -----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET--RSKEILKLLELPP--AK 136
+ Q+ L ++RE R D TD+++ + L P
Sbjct: 406 EVRRRVSVCAQDAHLFDT-TVRENLRLARP--DATDEELWAALERVGLADWLRALPDGLD 462
Query: 137 KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP-ILSQIIWDRLKEMALNG 191
++G LSGG+++R++ A +LL + +L+LDEPT LD +++ D L AL+G
Sbjct: 463 TVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA--ALSG 520
Query: 192 KTIIITTH 199
+T+++ TH
Sbjct: 521 RTVVLITH 528
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 57/190 (30%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS- 84
G L+G++ ++ + ++GPSG GK+TL IVG +G+++L +Q
Sbjct: 328 GGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLLELPP 134
IGY+PQ++ L ++ E +G D ++I +K E++ L LP
Sbjct: 388 ETFGKHIGYLPQDVELF-PGTVAENIARFGENAD--PEKIIEAAKLAGVHELI--LRLPD 442
Query: 135 AKKIV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
V LSGGQ++RI+ A +L +PKL++LDEP LD Q + + +K +
Sbjct: 443 GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA 502
Query: 190 NGKTIIITTH 199
G T+++ TH
Sbjct: 503 RGITVVVITH 512
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-18
Identities = 61/231 (26%), Positives = 117/231 (50%), Gaps = 22/231 (9%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V++ Y KI L ++L++ + +I L+G +G GKTTLL + G +G I +
Sbjct: 11 VSAHYGKIQ---ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGK 67
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
I+D + +P+ + +++ E G+ + Q + R K + +L
Sbjct: 68 DITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD--QFQERIKWVYELFP 125
Query: 132 LPPAKKI--VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
++I G +SGG+Q+ ++ +L+ P+LL+LDEP++GL PI+ Q I+D ++++
Sbjct: 126 RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE 185
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV--EALEDA 238
G TI + +A + G + ++ G +V D ++L+ EA+ A
Sbjct: 186 QGMTIFLVEQNANQALKLADRGYVLEN---GHVVLEDTGDALLANEAVRSA 233
|
Length = 237 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 2e-18
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 32/223 (14%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-----RNTLDAGTIKLSFRQI- 83
GN+ L G++L+ E ++ L+GPSGCGK+T L C+ N G IK + I
Sbjct: 15 GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIY 74
Query: 84 ----------SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLLEL 132
++G + Q+ S+ + Y + + D + I+ R +E LK +
Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAI 133
Query: 133 -----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
+ A SGGQQ+RI A +L PK+++LDEPT LDPI S I + L E+
Sbjct: 134 WKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193
Query: 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230
+ T I+ TH +++A R L++ D++E+
Sbjct: 194 K-HQYTFIMVTHNLQQAG--------RISDQTAFLMNGDLIEA 227
|
Length = 251 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-18
Identities = 48/157 (30%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD--AGTIKLSFRQISD-----IGYMPQELALHGELSIR 102
L+G SG GKTTLL+ + GR T G I ++ R + GY+ Q+ L++R
Sbjct: 38 LMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVR 97
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
E R+ + R LS Q++R++ V L P +
Sbjct: 98 EALRFSALL----------R------------------GLSVEQRKRLTIGVELAAKPSI 129
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
L LDEPT GLD + I LK++A +G+ I+ T H
Sbjct: 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIH 166
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 2e-18
Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---TIKLSFR--QIS 84
G L + +++P+N++ L+GPSGCGK+TLL C N L G T + + I
Sbjct: 17 GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIM 76
Query: 85 DIGYMPQELALHGEL----------SIRETFRY----YGYMFDMTDDQIETRS------- 123
D G L + SI E Y +G T D I +S
Sbjct: 77 DSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALW 136
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+ L +LSGGQQ+R+ A +L NP+++++DEP LDPI + I D
Sbjct: 137 DEVKDRLHDSAL-----SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIED- 190
Query: 184 LKEMALNGKTIIITTHYIEEAKGAHNI-GLMRDDQYIGRLVHHD 226
L E T+II TH +++A + G M Y+G+L+ D
Sbjct: 191 LIEDLKKEYTVIIVTHNMQQAARVSDYTGFM----YLGKLIEFD 230
|
Length = 253 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-18
Identities = 70/235 (29%), Positives = 118/235 (50%), Gaps = 30/235 (12%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV------- 66
IE ++ VT AY VLK ++ +P K ++GPSG GK+T+L +
Sbjct: 1 IEFEN---VTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSS 55
Query: 67 GRNTLDAGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G +D I+ S R IG +PQ+ L + +I RY G D TD+++
Sbjct: 56 GSILIDGQDIREVTLDSLR--RAIGVVPQDTVLFND-TIGYNIRY-GRP-DATDEEVIEA 110
Query: 123 SK--EIL-KLLELPPA-KKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
+K +I K++ P IVG LSGG+++R++ A ++L NP +L+LDE T LD
Sbjct: 111 AKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDT 170
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ I L++++ G+T I+ H + A I +++D + + R H +++
Sbjct: 171 HTEREIQAALRDVS-KGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 2e-18
Identities = 64/195 (32%), Positives = 101/195 (51%), Gaps = 21/195 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQISD- 85
G L +N+ + +NKI L+G SGCGK+T L C N A G +++ + + +
Sbjct: 13 GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ 72
Query: 86 --------IGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLEL--- 132
+G + Q+ + + SI E Y + M D+ E + L+ + L
Sbjct: 73 DVVALRKNVGMVFQQPNVFVK-SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEE 131
Query: 133 --PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190
K+ ALSGGQQ+R+ A +L PKLL+LDEPT LDPI S +I + LKE++ N
Sbjct: 132 VKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 191 GKTIIITTHYIEEAK 205
++I+ TH +++ K
Sbjct: 192 -LSMIMVTHNMQQGK 205
|
Length = 246 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 3e-18
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS------FRQI 83
G V+ GL+ + + L GP+G GKTTLL I G AGTIKL
Sbjct: 13 GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVA 72
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI-VGAL 142
Y+ A+ L++ E ++ + I L+ + L P + G L
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA----AALEAVGLAPLAHLPFGYL 128
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIITT 198
S GQ+RR++ A L+ N + ILDEPT LD + +++I L + G +I T
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ----GGIVIAAT 184
Query: 199 HYIEEAKGAHNIGL 212
H GA + L
Sbjct: 185 HIPLGLPGARELDL 198
|
Length = 207 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 3e-18
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--IKLSFRQIS 84
+ G + + +L++ E +I L+G SG GK+TLL + G N + G+ +K +
Sbjct: 32 DRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSV- 90
Query: 85 DIGYMP----------------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
D+ Q+ AL ++ E + M M + R E L+
Sbjct: 91 DVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLE 150
Query: 129 LLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L+ L A + G LSGG Q+R+ A + +L++DEP LDP++ + D L E+
Sbjct: 151 LVGLAQWADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLEL 210
Query: 188 --ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLV-----EALEDAL 239
L KTI+ +H ++EA K + I +M GR++ H E +V + + D +
Sbjct: 211 QSKLK-KTIVFVSHDLDEALKIGNRIAIMEG----GRIIQHGTPEEIVLNPANDYVADFV 265
Query: 240 RHGNVIN 246
H N +N
Sbjct: 266 AHTNPLN 272
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-18
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 32/201 (15%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G+ LK +NL++ EN++ L+GPSGCGK+T L + N L G + L + I
Sbjct: 14 GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIY 73
Query: 85 DIGYMPQELALH----------GELSIRETFRYYGYMFDMTD----DQIETRS------- 123
+L +SI + Y + D D+I +S
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALW 133
Query: 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+ L KK LSGGQQ+R+ A +L P++L++DEPT LDPI + I +
Sbjct: 134 DEVKDRL-----KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 184 LKEMALNGKTIIITTHYIEEA 204
++E+ TI+I TH +++A
Sbjct: 189 IQELK-KDYTIVIVTHNMQQA 208
|
Length = 250 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 7e-18
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 30/221 (13%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQISD 85
+ +LK +NL++P+N + L+GPSGCGK+T + + N L G I L I D
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMT-----------DDQIETRSKEILKLLEL-- 132
EL + ++ + +FD +D IE R +E LK L
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 133 ---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K LSGGQQ+R+ A ++ +P+++++DEP LDPI + I D + ++
Sbjct: 135 EVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK- 193
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230
TI+I TH +++A R +Y ++ +I+ES
Sbjct: 194 EDYTIVIVTHNMQQA--------TRVSKYTSFFLNGEIIES 226
|
Length = 250 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 8e-18
Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 3 KISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
KI K + + KK G V + ++L+V E +I+ ++G SG GK+TLL
Sbjct: 8 KIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLL 67
Query: 63 NCIVGRNTLDAGTIKLSFRQIS-------------DIGYMPQELALHGELSIRETFRYYG 109
CI +G + + + I+ I + Q AL ++ E +
Sbjct: 68 RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGL 127
Query: 110 YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ + + E R+ E L+L+ L K LSGG Q+R+ A +L +P +L++DE
Sbjct: 128 EVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA 187
Query: 169 TVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLV 223
LDP++ + + D L + A KTI+ TH ++EA + I +M+D GRLV
Sbjct: 188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKD----GRLV 240
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 9e-18
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 49/211 (23%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
+L ++L + N ++G SG GK+TL +VG +G I L+ + D
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQ 548
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMT--DDQI-----ETRSKEILKLLELPPAKK 137
I Y+PQE Y+F + ++ + EI E+ K
Sbjct: 549 FINYLPQE----------------PYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKD 592
Query: 138 IV---------------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
+ ++SGGQ++RI+ A +LL + K+LILDE T LD I + I +
Sbjct: 593 DIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVN 652
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213
L + L KTII H + AK + I ++
Sbjct: 653 NL--LNLQDKTIIFVAHRLSVAKQSDKIIVL 681
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-17
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 25/223 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G+ L ++L +N++ L+GPSGCGK+T L C+ N L G I L I
Sbjct: 17 GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIY 76
Query: 85 DIGYMPQELALHGEL----------SIRETFRYYGYMFDMTDDQ-IETRSKEILKLLEL- 132
D EL + SI E Y + + D + R + L+ L
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALW 136
Query: 133 PPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
K + LSGGQQ+R+ A +L P++L++DEP LDPI +Q I + + E+
Sbjct: 137 DEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK 196
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL 231
TIII TH +++A ++ Y+G+L+ E +
Sbjct: 197 AR-YTIIIVTHNMQQAARVSDVTAFF---YMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 47/202 (23%), Positives = 90/202 (44%), Gaps = 36/202 (17%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
L +++ + + + ++G +G GKTT + + D GTI+ F+ + ++
Sbjct: 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81
Query: 94 ALHGELSIRET------------------FRYYGYM----------------FDMTDDQI 119
+ +L I++T F++ Y ++ ++
Sbjct: 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEA 141
Query: 120 ETRSKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ R+ + ++L+ L + ++ LSGGQ+RR++ A L P L+ DEPT GLDP
Sbjct: 142 KKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGV 201
Query: 178 QIIWDRLKEMALNGKTIIITTH 199
+ I + + GKTII+ TH
Sbjct: 202 KEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 1e-17
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT-----IKLSFRQIS 84
G+ LKG+++ + E + +GPSGCGK+T L N L T I++ R I
Sbjct: 14 GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIY 73
Query: 85 DIGYMPQELALHGEL----------SIRETFRYYGYMFDMTDDQ-IETRSKEILKLLEL- 132
D G EL + + SI E Y + + D+ I R +E LK L
Sbjct: 74 DKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALW 133
Query: 133 ----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
K+ ALSGGQQ+R+ A ++ +P +L++DEP LDPI + + + + E+
Sbjct: 134 DEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK 193
Query: 189 LNGKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLVHHD 226
TI+I TH +++ A+ + Y+G +V +D
Sbjct: 194 -KDYTIVIVTHNMQQAARVSDKTAFF----YMGEMVEYD 227
|
Length = 250 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-17
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83
+ GL+ + + + GP+G GKTTLL + G + AG + L+ +
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDS 70
Query: 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-LKLLELPPAKKIVG 140
+ Y+ + LS+ E R++ D +D+Q+E + L E P V
Sbjct: 71 IARGLLYLGHAPGIKTTLSVLENLRFWHA--DHSDEQVEEALARVGLNGFEDRP----VA 124
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS GQQRR++ A LL L ILDEPT LD + + G +++TTH
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-17
Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 24/197 (12%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------------ 85
N +P I L GPSG GKT+L+N I G D G I+L+ R + D
Sbjct: 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTD--DQIETRSKEILKLLELPPAKKIVGAL 142
IGY+ Q+ L ++R R YG M DQ+ I LL+ P L
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLR-YGMWKSMRAQFDQL-VALLGIEHLLDRYPGT-----L 129
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT-IIITTHYI 201
SGG+++R++ +LL P+LL++DEP LD + I L+ + I+ +H +
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189
Query: 202 EE-AKGAHNIGLMRDDQ 217
+E + A + ++ + +
Sbjct: 190 DEVLRLADRVVVLENGK 206
|
Length = 352 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 2e-17
Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 39/194 (20%)
Query: 32 HVVLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS--- 84
L ++L + K+ ++G G GK+TLL + G +G++ L RQ+
Sbjct: 17 IPALDNVSLTIRAGEKV-AIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPAD 75
Query: 85 ---DIGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
+IGY+PQ++ L +G ++R+ G DD+ IL+ EL V
Sbjct: 76 LRRNIGYVPQDVTLFYG--TLRDNITL-GAPL--ADDE------RILRAAELAGVTDFVN 124
Query: 141 ---------------ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
LSGGQ++ ++ A +LL++P +L+LDEPT +D + + +RL+
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 186 EMALNGKTIIITTH 199
++ L KT+II TH
Sbjct: 185 QL-LGDKTLIIITH 197
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
+L LN V + + G SG GKT+LL + G G+ ++S S + ++
Sbjct: 404 DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPADSALLFL 461
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA------L 142
PQ L + ++RE Y D +D ++ +L + L A+++ L
Sbjct: 462 PQRPYL-PQGTLREALCYPNAAPDFSDAELV----AVLHKVGLGDLAERLDEEDRWDRVL 516
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
SGG+Q+R++FA LLH PK + LDE T LD ++ LKE L T+I H
Sbjct: 517 SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEE-LPDATVISVGH 572
|
Length = 604 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-17
Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 26/197 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTI--KLSFR--QIS 84
G+ L +++++PEN++ ++GPSGCGK+T L CI N L DA + +L+FR +
Sbjct: 50 GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109
Query: 85 DIGYMPQELALHGEL------------SIRETFRYYGYMFDMTDDQIETRSKEILKLLEL 132
D P +AL + SI + YG D I+ R +E L+ L
Sbjct: 110 DADVDP--VALRRRIGMVFQKPNPFPKSIYDNV-AYGLKIQGYDGDIDERVEESLRRAAL 166
Query: 133 -----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
LSGGQQ+R+ A ++ +P+++++DEP LDP+ + I D ++E+
Sbjct: 167 WDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL 226
Query: 188 ALNGKTIIITTHYIEEA 204
A T++I TH +++A
Sbjct: 227 A-EEYTVVIVTHNMQQA 242
|
Length = 285 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 5e-17
Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 20/151 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-DIGY 88
G VL ++L + KI LLGP+G GK+TL+ ++G D G IK R IGY
Sbjct: 15 GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---RNGKLRIGY 71
Query: 89 MPQELALHGE--LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA----L 142
+PQ+L L L++ R T+ ++IL L+ A ++ A L
Sbjct: 72 VPQKLYLDTTLPLTVNRFLRLRP----------GTKKEDILPALKRVQAGHLIDAPMQKL 121
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
SGG+ +R+ A +LL+ P+LL+LDEPT G+D
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 76.7 bits (190), Expect = 5e-17
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 49/210 (23%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFR 81
+ + ++ ++ V +I G+ G G G+T L + G +G I L + R
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRR 67
Query: 82 QISD-----IGYMPQELALHG---ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
D I Y+P++ G +LS+ E L L
Sbjct: 68 SPRDAIRAGIAYVPEDRKREGLVLDLSVAENI--------------------ALSSL--- 104
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
LSGG Q+++ A L +P++LILDEPT G+D I+ ++E+A GK
Sbjct: 105 --------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 194 IIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222
+++ + ++E G I +M + GR+
Sbjct: 157 VLLISSELDELLGLCDRILVMYE----GRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.7 bits (191), Expect = 7e-17
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 22/196 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQISDIGY 88
G LKG++L+ +N+I L+GPSGCGK+T L + N L TI + Y
Sbjct: 16 GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIY 75
Query: 89 MPQELALHGELSIRETFR-------------YYGYMFD------MTDDQIETRSKEILKL 129
P E + + F+ YG + D+ +ET K+
Sbjct: 76 APNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 130 LELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
E+ + +LSGGQQ+R+ A L P +++LDEPT LDPI S I + L E+
Sbjct: 136 DEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 189 LNGKTIIITTHYIEEA 204
+ TII+ TH + +A
Sbjct: 196 -DQYTIILVTHSMHQA 210
|
Length = 252 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISDIG 87
G +LKG+NL V E +++ ++GP+G GK+TL I+G + G I DI
Sbjct: 15 GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF---DGEDIL 71
Query: 88 YM-PQELALHG------------ELSIRETFRYYG---YMFDMTDDQIETRSKEILKLLE 131
+ P E A G ++ + R + KE +LL
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 132 LPP--AKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L ++ V SGG+++R LL PKL ILDEP GLD +I+ + + +
Sbjct: 132 LDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR 191
Query: 189 LNGKTIIITTHY 200
G+ ++I THY
Sbjct: 192 EEGRGVLIITHY 203
|
Length = 251 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-16
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 40/255 (15%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
E+ +V H+ + VL ++L++ E + GLLG SGCGK+TL ++G
Sbjct: 4 EVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP 63
Query: 72 DAGTIKL--------------SFR-------QISDIGYMPQELALHGELSIRETFRYYGY 110
GT+ +FR Q S P+ I E R+
Sbjct: 64 AQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTV---RQIIGEPLRHL-- 118
Query: 111 MFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ + + + R E+L ++ L A K+ LSGGQ +RI+ A +L PKL++LDE
Sbjct: 119 -TSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEA 177
Query: 169 TVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHD 226
LD +L +I + L+++ G + TH + + +M Q
Sbjct: 178 VSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQ--------- 228
Query: 227 IVESLVEALEDALRH 241
IVE A + +H
Sbjct: 229 IVEECDVAQLLSFKH 243
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 41/176 (23%)
Query: 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
++++ V + K N + K LNL + + ++G +G GKTTLL +VG D+GT+
Sbjct: 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Query: 77 KLSFRQISDIGYMPQ--------ELAL-----------HGELSIRETFRYYGYMFDMTDD 117
K S + ++IGY Q +L L E ++R T G + DD
Sbjct: 377 KWS--ENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL---GRLLFSQDD 431
Query: 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
KK V LSGG++ R+ F ++ P +L++DEPT +D
Sbjct: 432 -----------------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-16
Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 17/189 (8%)
Query: 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT 75
+ H A K + VL ++L++ + LLG SGCGK+TL +VG + G
Sbjct: 9 LSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68
Query: 76 I--------KLSFRQIS----DIGYMPQEL--ALHGELSIRETFRY-YGYMFDMTDDQIE 120
+ KL+ Q DI + Q+ A++ ++RE R ++ + +
Sbjct: 69 VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL 128
Query: 121 TRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R+ E+L+ ++L K LSGGQ +R+ A +L PKLLILDE LD +L
Sbjct: 129 ARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQA 188
Query: 179 IIWDRLKEM 187
+ LK++
Sbjct: 189 GVIRLLKKL 197
|
Length = 268 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 2e-16
Identities = 67/232 (28%), Positives = 103/232 (44%), Gaps = 52/232 (22%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC------------IVGRNTLDAGTI- 76
G VL G+NL +P+N I L+GPSG GK+TLL + G LD I
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIF 73
Query: 77 KLSF----RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD--QIETRSKEILKLL 130
K+ R++ + +P + LSI E + + +++ R + L+
Sbjct: 74 KMDVIELRRRVQMVFQIPNPIP---NLSIFENVALGLKLNRLVKSKKELQERVRWALEKA 130
Query: 131 EL---------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LS 177
+L PA G LSGGQQ+R+ A +L P++L+ DEPT LDP +
Sbjct: 131 QLWDEVKDRLDAPA----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ + K+M TI++ TH+ ++A R Y+ L IVE
Sbjct: 187 SLFLELKKDM-----TIVLVTHFPQQAA--------RISDYVAFLYKGQIVE 225
|
Length = 250 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 3e-16
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 31/208 (14%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS 79
V + K+ G VL GLN +V + L+GPSG GK+T+L ++ +D G I++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 80 FRQISDIGYMPQELALHGELSIRETFRYYGYMFD-----------------------MTD 116
Q+ + L E +R+ G +F M
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR 120
Query: 117 DQIETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+ E R+ E+L ++ L + A LSGGQQ+R++ A +L PK+++ DE T LDP
Sbjct: 121 AEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 176 LSQ----IIWDRLKEMALNGKTIIITTH 199
L +I E L T+++ TH
Sbjct: 181 LVGEVLNVIRRLASEHDL---TMLLVTH 205
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 3e-16
Identities = 75/245 (30%), Positives = 116/245 (47%), Gaps = 48/245 (19%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
IIE+++ SAY G +K + + + +N+I ++GPSGCGKTTLL I N
Sbjct: 2 PIIEIEN----FSAY--YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDH 55
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD-------DQIE---- 120
G FR I + Q++ +L + E + G +F D +
Sbjct: 56 IPG-----FRVEGKIYFKGQDI-YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPR 109
Query: 121 ---TRSKEIL-KLLE--LPPA----------KKIVGALSGGQQRRISFAVSLLHNPKLLI 164
+SK L +++E L A K LSGGQQ+R+ A +L P++++
Sbjct: 110 IHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
LDEPT LDPI +Q I L+E++ N TI+I TH I +A +R YI +
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSEN-YTIVIVTHNIGQA--------IRIADYIAFMYR 220
Query: 225 HDIVE 229
+++E
Sbjct: 221 GELIE 225
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 3e-16
Identities = 61/218 (27%), Positives = 103/218 (47%), Gaps = 39/218 (17%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD------- 72
+ V K H L ++LN+ ++ LLGPSG GK+TLL + G T D
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 73 ---AGTIKLSFRQISDI-------GYMPQELALHGELSI---------------RETFRY 107
T++ R DI GY+ Q+ L LS+ R F +
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSW 124
Query: 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167
+ T +Q + + + ++ + A + V LSGGQQ+R++ A +L+ K+++ DE
Sbjct: 125 F------TREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADE 178
Query: 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEA 204
P LDP ++I+ D L+++ N G T+++T H ++ A
Sbjct: 179 PIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA 216
|
Length = 262 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-16
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 34/198 (17%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---NCIVGRNTLDA---GTIKLSFRQI 83
G++ V+KG++L +P+N ++ L+GPSGCGK+TLL N ++ N +A G ++L R I
Sbjct: 15 GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE-EARVEGEVRLFGRNI 73
Query: 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMT-----------------DDQIETRSKEI 126
Y P + + F+Y +T +++ R +
Sbjct: 74 ----YSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWA 129
Query: 127 LKLLELPPAKK-----IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
LK L K LSGGQ++R+ A +L PK+L++DEPT +DP+ + I
Sbjct: 130 LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 182 DRLKEMALNGKTIIITTH 199
+ L E+ TI++ TH
Sbjct: 190 ELLFELK-KEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 4e-16
Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ- 91
L GL+L + E ++G +G GK+TLLN I G +G I + + D+
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILID--GV-DVTKKSVA 76
Query: 92 -------------ELALHGELSIRETF---RYYGYMFDMTDDQIETRSKEILKLLE---- 131
EL+I E G ++ E R + L
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL 136
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+G LSGGQ++ +S ++ LH PK+L+LDE T LDP ++ + + ++
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
Query: 190 NGK-TIIITTHYIEEA 204
K T ++ TH +E+A
Sbjct: 197 EHKLTTLMVTHNMEDA 212
|
Length = 263 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-16
Identities = 55/199 (27%), Positives = 104/199 (52%), Gaps = 15/199 (7%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFRQISD 85
VLKG++L++ + +I ++G SG GK+TLL+ + G + +G + KLS + +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 86 I-----GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIV 139
+ G++ Q L + + E + + + + R+ E+L+ + L
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRP 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT-IIITT 198
LSGG+++R++ A +L++ P L++ DEPT LD ++II+D + E+ T ++ T
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199
Query: 199 HYIEEAKGAHNIGLMRDDQ 217
H +E AK + M+D Q
Sbjct: 200 HDLELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-16
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 35/209 (16%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----------SFR 81
VL LNL++ + G++GPSG GK+TL + T G + + R
Sbjct: 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-ETRSKEILKL-------LELP 133
+ +G + QE L SIR+ + + KL ELP
Sbjct: 531 R--QMGVVLQENVLFSR-SIRDNIA-------LCNPGAPFEHVIHAAKLAGAHDFISELP 580
Query: 134 -----PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ LSGGQ++RI+ A +L+ NP++LI DE T LD +I ++E+
Sbjct: 581 QGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC 640
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
G+T+II H + + I ++ Q
Sbjct: 641 -RGRTVIIIAHRLSTVRACDRIIVLEKGQ 668
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 4e-16
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 30/199 (15%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--------------- 74
G + L ++L +P KI +GPSGCGK+TLL C N L G
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 75 -----TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
++KL RQ+ + P +I R GY ++ D+ +E +
Sbjct: 91 DSQINSVKLR-RQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNL-DELVEDSLRRAAIW 148
Query: 130 LELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
E+ K G ALSGGQQ+R+ A ++ P +L++DEP LDPI ++ +++E+
Sbjct: 149 EEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTR----QVEELC 204
Query: 189 LNGK---TIIITTHYIEEA 204
L K TII+ TH +++A
Sbjct: 205 LELKEQYTIIMVTHNMQQA 223
|
Length = 274 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 5e-16
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 24/211 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
++ V +K+ G H VLKG++L + ++G SG GK+T L CI AG+I++
Sbjct: 6 ALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65
Query: 79 SFRQI-----SDIGYMP----QELALHGELS-IRETFRYYGYM-------------FDMT 115
+ +I D P Q L L + + F + +M ++
Sbjct: 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVS 125
Query: 116 DDQIETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
+ R+++ L + + A LSGGQQ+R++ A +L P++++ DEPT LDP
Sbjct: 126 KAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDP 185
Query: 175 ILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
L + ++++A G+T+++ TH + A+
Sbjct: 186 ELVGEVLKVMQDLAEEGRTMVVVTHEMGFAR 216
|
Length = 256 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 6e-16
Identities = 69/231 (29%), Positives = 103/231 (44%), Gaps = 50/231 (21%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQIS 84
G L +NL + ENKI L+GPSGCGK+T L C+ N L G + L + I
Sbjct: 15 GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Query: 85 D-----------IGYM---PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
D +G + P + SI + Y + + D KE+ K++
Sbjct: 75 DKDVDVVELRKRVGMVFQKPNPFPM----SIYDNVAYGPRIHGIKD------KKELDKIV 124
Query: 131 E--LPPA----------KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
E L A KK LSGGQQ+R+ A ++ P ++++DEPT LDPI +
Sbjct: 125 EWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTL 184
Query: 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I D + E+ TI+I TH +++A R Y + D++E
Sbjct: 185 KIEDLMVELK-KEYTIVIVTHNMQQAS--------RVSDYTAFFLMGDLIE 226
|
Length = 251 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 7e-16
Identities = 55/190 (28%), Positives = 96/190 (50%), Gaps = 16/190 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G+ VL G++L+V E + GL+GP+G GKTTLL I G T AGT+ ++ +
Sbjct: 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSAR 73
Query: 86 -----IGYMPQELALHGELSIRETFRY----YGYMFDMTDDQIETRSKEILKLLELPP-A 135
+ +PQ+ +L E +R+ + FD + + ++ + A
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA 133
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNGKTI 194
+ V +LSGG+++R+ A +L +L+LDEPT LD I Q+ + ++ + +GKT
Sbjct: 134 DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD-INHQVRTLELVRRLVDDGKTA 192
Query: 195 IITTHYIEEA 204
+ H ++ A
Sbjct: 193 VAAIHDLDLA 202
|
Length = 402 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 7e-16
Identities = 65/205 (31%), Positives = 100/205 (48%), Gaps = 21/205 (10%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL---LNCIV--- 66
I++V+ + Y G H LKG+N+N+ + ++ +LG +G GK+TL LN I+
Sbjct: 5 ILKVEE---LNYNYSD-GTHA-LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS 59
Query: 67 -GRNTLDAGTIKLS------FRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
GR D I S R+ + + + L S+ + + + +D++
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA-SVYQDVSFGAVNLKLPEDEV 118
Query: 120 ETRSKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
R LK + K K LS GQ++R++ A L+ PK+L+LDEPT GLDP+
Sbjct: 119 RKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 179 IIWDRLKEMALN-GKTIIITTHYIE 202
I L EM G TIII TH I+
Sbjct: 179 EIMKLLVEMQKELGLTIIIATHDID 203
|
Length = 283 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 9e-16
Identities = 68/240 (28%), Positives = 112/240 (46%), Gaps = 34/240 (14%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-----GTIKLSFRQIS 84
G + LK +NL +P ++ L+GPSGCGK+TLL C+ N L G + + I
Sbjct: 14 GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73
Query: 85 ---DIGYMPQELALHGE------LSIRETFRYYGYMFDMTD----DQIETRS-------K 124
D+ + ++ + + +SI E Y + D D++ RS
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
E+ L+ LSGGQQ+R+ A ++ P ++++DEPT LDPI + I + +
Sbjct: 134 EVKDRLKSHAF-----GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELM 188
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNV 244
+E+ N TI+I TH +++A+ I +G LV HD + + +D G V
Sbjct: 189 EELKKN-YTIVIVTHSMQQAR---RISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQGYV 244
|
Length = 249 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 1e-15
Identities = 59/211 (27%), Positives = 103/211 (48%), Gaps = 40/211 (18%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDA----GTIKLSFRQI- 83
G+ LKG+++++PE + L+GPSGCGK+T L C+ N + A G+++L + I
Sbjct: 56 GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115
Query: 84 ----------------------------SDIGYMPQELALHGELSIRETFRYYGYMFDMT 115
+I Y P++ HG+++ R G
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRK---HGDINTGLLARLLGRDDKDA 172
Query: 116 DDQIETRSKEILKLLELPPAKKIVGAL--SGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+D++ RS L + + AL SGGQQ+R+ A L +P+++++DEP LD
Sbjct: 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
PI + I D ++E+A T+++ TH +++A
Sbjct: 233 PIATSKIEDLIEELA-EEYTVVVVTHNMQQA 262
|
Length = 305 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 1e-15
Identities = 58/185 (31%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD------- 85
+LK +++ IY ++GPSG GK+TL+ I G+I + I
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLR 76
Query: 86 --IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALS 143
IG + Q+ L E ++++ Y G M + I+ L A + V LS
Sbjct: 77 RKIGMVFQQPHLF-EGTVKDNIEY-GPMLKGEKNVDVEYYLSIVGL-NKEYATRDVKNLS 133
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD---RLKEMALNGKTIIITTHY 200
GG+ +R+S A +L +NP++L+LDEPT LDP ++II + +LK T+I TH
Sbjct: 134 GGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM--NLTVIWITHN 191
Query: 201 IEEAK 205
+E+AK
Sbjct: 192 MEQAK 196
|
Length = 241 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-15
Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 30/195 (15%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTI--KLSFRQIS------- 84
+KG+++ +NKI L+GPSG GK+T L + N T+D + ++ +R I
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 85 ------DIGYM---PQELALHGELSIRETFRYYGYMFDMTDDQ-IETRSKEILKLLEL-- 132
IG + P A SI E + + D + ++ + LK L
Sbjct: 96 VYEMRKHIGMVFQRPNPFAK----SIYENITFALERAGVKDKKVLDEIVETSLKQAALWD 151
Query: 133 ---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K LSGGQQ+R+ A ++ P +L++DEP LDPI + + + + E+
Sbjct: 152 QVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK 211
Query: 190 NGKTIIITTHYIEEA 204
N TIII TH +++A
Sbjct: 212 N-YTIIIVTHNMQQA 225
|
Length = 267 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 1e-15
Identities = 62/214 (28%), Positives = 99/214 (46%), Gaps = 21/214 (9%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTI----KLS 79
K G L G++L V + GL G +G GK+TL+ + G T D L
Sbjct: 9 KTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68
Query: 80 FRQISD-----IGYMPQELALHGELSIRETFRYYGYMFD-----MTDDQIETRSKEILKL 129
I D I + QEL L ELS+ E + G M + + R+K +L+
Sbjct: 69 ASNIRDTERAGIVIIHQELTLVPELSVAENI-FLGNEITLPGGRMAYNAMYLRAKNLLRE 127
Query: 130 LELP--PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L+L + VG GGQQ+ + A +L +LLILDEP+ L ++I+ D ++++
Sbjct: 128 LQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 188 ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
+G + +H + E K I ++RD Q++
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVA 221
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 1e-15
Identities = 60/232 (25%), Positives = 101/232 (43%), Gaps = 56/232 (24%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT---------------- 75
H VLK +N++ PE +I ++GPSGCGK+TLL + N + +G
Sbjct: 17 HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSP 76
Query: 76 ----------IKLSFRQ--------ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117
+ + F+Q ++ + P+ L + + E + D+
Sbjct: 77 NLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE 136
Query: 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ K L ALSGGQQ+R+ A L P+++++DEP LDP+ +
Sbjct: 137 VKDNLHKSGL-------------ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I + ++E+ N TI I TH +++A R + G L+ D+VE
Sbjct: 184 MRIEELMQELKQN-YTIAIVTHNMQQAA--------RASDWTGFLLTGDLVE 226
|
Length = 251 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 2e-15
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 31/232 (13%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLDA 73
V AY + L GLNL V + L+GPSG GK+TL ++ GR LD
Sbjct: 342 QVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401
Query: 74 GTIKLSFRQI--SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE------ 125
++ + + +PQ+ L S+ E RY G D TD+++E ++
Sbjct: 402 VDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRY-GRP-DATDEEVEAAARAAHAHEF 458
Query: 126 ILKLLE---LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
I L E ++ V LSGGQ++RI+ A ++L + +L+LDE T LD Q++
Sbjct: 459 ISALPEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQ 517
Query: 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV----HHDIVES 230
L E + G+T +I H + A I +M DQ GR+V H +++
Sbjct: 518 AL-ETLMKGRTTLIIAHRLATVLKADRIVVM--DQ--GRIVAQGTHAELIAK 564
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 20/200 (10%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQISD---- 85
+LKG++ + + G++GPSG GK+TL +VG +G+++L RQ
Sbjct: 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409
Query: 86 --IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI--ETRSKEILKL-LELPPA-KKIV 139
IGY+PQ++ L + +I E +G + +++ R + +L L LP +
Sbjct: 410 RHIGYLPQDVELF-DGTIAENIARFGE--EADPEKVIEAARLAGVHELILRLPQGYDTRI 466
Query: 140 G----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
G LSGGQ++RI+ A +L +P L++LDEP LD + + G T++
Sbjct: 467 GEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVV 526
Query: 196 ITTHYIEEAKGAHNIGLMRD 215
+ H I +++D
Sbjct: 527 VIAHRPSALASVDKILVLQD 546
|
Length = 580 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 2e-15
Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 56/223 (25%)
Query: 14 IEVKHSVAVTSAYKKIGNHVV-LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IE+K+ ++ + + G + L ++L++P +I+G++G SG GK+TL+ CI
Sbjct: 2 IELKN---ISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT 58
Query: 73 AGTI--------KLS------FRQISDIGYMPQELALHGELSIRETFRYYGYMFD----- 113
+G + LS R+ IG + Q L LS R +FD
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARR--QIGMIFQHFNL---LSSRT-------VFDNVALP 106
Query: 114 -----MTDDQIETRSKEILKLLELP------PAKKIVGALSGGQQRRISFAVSLLHNPKL 162
+I+ R E+L+L+ L PA+ LSGGQ++R++ A +L NPK+
Sbjct: 107 LELAGTPKAEIKARVTELLELVGLSDKADRYPAQ-----LSGGQKQRVAIARALASNPKV 161
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALN---GKTIIITTHYIE 202
L+ DE T LDP ++ I + LK+ +N G TI++ TH ++
Sbjct: 162 LLCDEATSALDPATTRSILELLKD--INRELGLTIVLITHEMD 202
|
Length = 343 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-15
Identities = 63/202 (31%), Positives = 104/202 (51%), Gaps = 23/202 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G+ V+ K +NL++ E + +GPSGCGK+TLL I G + +G + +
Sbjct: 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFI 62
Query: 79 SFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK---EILK 128
++++D +G + Q AL+ LS+ E + + ++I R E+L+
Sbjct: 63 GEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQ 122
Query: 129 ---LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS---QIIWD 182
LL+ P ALSGGQ++R++ +L+ P + +LDEP LD L +I
Sbjct: 123 LAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 183 RLKEMALNGKTIIITTHYIEEA 204
RL + G+T+I TH EA
Sbjct: 178 RLHKRL--GRTMIYVTHDQVEA 197
|
Length = 369 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-15
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 29/190 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI------------KLSFR 81
VLK ++L V + L GPSG GK+TLL + D+G I + S R
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 82 QI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE----- 131
++ IGY+ Q L + +S E + + R++E+L L
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERL 142
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
LPPA SGG+Q+R++ A + + +L+LDEPT LD Q++ + + E
Sbjct: 143 WHLPPA-----TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA 197
Query: 190 NGKTIIITTH 199
G +I H
Sbjct: 198 RGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (179), Expect = 4e-15
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 44/222 (19%)
Query: 16 VKHSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+ + + KI GN + ++ ++ + +N+I G +GPSGCGK+T+L + N L
Sbjct: 3 SEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVK 62
Query: 74 GTIKLSFRQISDIGYMPQELALHG--ELSIRETFRYYGYMFDMTD--------------- 116
G FR + ++ Q++ G + +R RY G +F +
Sbjct: 63 G-----FRFEGHVHFLGQDVYGKGVDPVVVR---RYIGMVFQQPNPFSMSIFDNVAFGLR 114
Query: 117 ---------DQIETRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILD 166
D+++ + E+ K+ G +LSGGQQ+R+ A ++ P++L+LD
Sbjct: 115 LNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD 174
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGK---TIIITTHYIEEAK 205
EP LDPI ++ R++E+ + K TI + TH +++A
Sbjct: 175 EPCSALDPIATR----RVEELMVELKKDYTIALVTHNMQQAI 212
|
Length = 261 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-15
Identities = 62/217 (28%), Positives = 102/217 (47%), Gaps = 64/217 (29%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL---LNCIV---------------GRNTL 71
G H LK +NL++PEN++ ++GPSGCGK+T LN ++ G N L
Sbjct: 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNIL 82
Query: 72 DAGTIKLSFRQISDIGYM-------PQEL--------ALHGE------LSIRETFRYYGY 110
+ R+ +IG + PQ + +HG I E
Sbjct: 83 KGKVDLVELRK--NIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVA 140
Query: 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
++D D++ T++ +LSGGQQ+R+ A +L NP +L++DEPT
Sbjct: 141 LWDEVKDRLHTQAL----------------SLSGGQQQRLCIARALATNPDVLLMDEPTS 184
Query: 171 GLDPILSQIIWDRLKEMALNGK---TIIITTHYIEEA 204
LDP+ ++ +++E+ L K TI+I TH +++A
Sbjct: 185 ALDPVSTR----KIEELILKLKEKYTIVIVTHNMQQA 217
|
Length = 259 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 41/183 (22%)
Query: 8 RIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
R+ ++IE ++ ++ + G+ +++ L+ +P I G++GP+G GK+TL I G
Sbjct: 317 RLGDKVIEAEN---LSKGF---GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370
Query: 68 RNTLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYYGYMFDMTD--DQIETRSK 124
+ D+GTIK+ + + Y+ Q AL ++ E ++ D I+ +
Sbjct: 371 QEQPDSGTIKIG--ETVKLAYVDQSRDALDPNKTVWEE---------ISGGLDIIQLGKR 419
Query: 125 EILKLLELPPAK--------------KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
E+ P++ K VG LSGG++ R+ A +L +L+LDEPT
Sbjct: 420 EV-------PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472
Query: 171 GLD 173
LD
Sbjct: 473 DLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-14
Identities = 53/202 (26%), Positives = 90/202 (44%), Gaps = 38/202 (18%)
Query: 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD 85
Y G+ L +N P N ++GP+G GK+TL G +G++ + I+
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT- 69
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-----------------------ETR 122
+ +IRE ++ G +F DDQI R
Sbjct: 70 ------------KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHR 117
Query: 123 SKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
L +L L + ++ LSGG+++R++ A + P++L+LDEPT GLDP + +
Sbjct: 118 VSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 182 DRLKEMALN-GKTIIITTHYIE 202
D L ++ G T+I +TH ++
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLD 199
|
Length = 277 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 1e-14
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 27/198 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQIS 84
G LK +++ +P+N + L+GPSGCGK+T + C+ N L G + + I
Sbjct: 23 GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82
Query: 85 DIGYMPQELALH----------GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-- 132
+ EL + +SI + Y + ++ + L+ L
Sbjct: 83 EPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD 142
Query: 133 ---PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K +LSGGQQ+R+ A +L PK+++ DEPT LDPI + R++++ +
Sbjct: 143 ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTA----RIEDLIM 198
Query: 190 NGK---TIIITTHYIEEA 204
N K TI+I TH +++A
Sbjct: 199 NLKKDYTIVIVTHNMQQA 216
|
Length = 258 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-14
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 20/208 (9%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
S K+ VLKG++ + +++ LLG +G GK+TL+ I G D+GT+++
Sbjct: 14 ARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN 73
Query: 82 QISD----------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-ETRSKEILKLL 130
+ I +PQE L LS++E +F + Q + K++L L
Sbjct: 74 PCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENI-----LFGLPKRQASMQKMKQLLAAL 128
Query: 131 --ELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+L G+L ++ + L+ + ++LILDEPT L P ++ ++ R++E+
Sbjct: 129 GCQLDLDSS-AGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL 187
Query: 189 LNGKTIIITTHYIEEAKG-AHNIGLMRD 215
G I+ +H + E + A I +MRD
Sbjct: 188 AQGVGIVFISHKLPEIRQLADRISVMRD 215
|
Length = 510 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 1e-14
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 21/183 (11%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP------- 90
+L + +I ++GPSG GK+TLLN I G T +G + ++ D+ P
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLING---VDVTAAPPADRPVS 73
Query: 91 ---QELALHGELSIRETF---RYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALS 143
QE L L++ + G D Q + L + L K++ G LS
Sbjct: 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQ---AIEVALARVGLAGLEKRLPGELS 130
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIE 202
GG+++R++ A L+ + +L+LDEP LDP L + D + ++ A T+++ TH E
Sbjct: 131 GGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE 190
Query: 203 EAK 205
+AK
Sbjct: 191 DAK 193
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 31/226 (13%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLD 72
+ V+ AY +L G++ +P K ++G SG GK+T+L + G T+D
Sbjct: 266 INVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITID 323
Query: 73 AGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE--- 125
I+ S R IG +PQ+ L + +I +Y D T +++ ++
Sbjct: 324 GQDIRDVTQQSLR--RAIGIVPQDTVLFND-TIAYNIKYGRP--DATAEEVGAAAEAAQI 378
Query: 126 ---ILKLLELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
I L E VG LSGG+++R++ A ++L NP +LILDE T LD Q
Sbjct: 379 HDFIQSLPEG--YDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQ 436
Query: 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
I L+E++ T++I H + A I ++ + + + R H
Sbjct: 437 AIQAALREVSAGRTTLVI-AHRLSTIIDADEIIVLDNGRIVERGTH 481
|
Length = 497 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-14
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 21/169 (12%)
Query: 50 LLGPSGCGKTTLLNCIVGRNT--LDAGTIKLS--------FRQISDIGYMPQELALHGEL 99
L+G SG GKTTL++ + GR T G I++S F +IS GY Q ++
Sbjct: 911 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARIS--GYCEQNDIHSPQV 968
Query: 100 SIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPPAKK-IVG-----ALSGGQQRRI 150
++RE+ Y ++ +++ ++ E+++L+EL K IVG LS Q++R+
Sbjct: 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRL 1028
Query: 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ AV L+ NP ++ +DEPT GLD + I+ ++ G+T++ T H
Sbjct: 1029 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077
|
Length = 1470 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-14
Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 24/209 (11%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS------------ 79
H + +N + K Y ++G +G GK+TL+ I GT+ +
Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKY 79
Query: 80 FRQI-SDIGYMPQ--ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
R + IG + Q E L E ++ + F M D+++ + +L ++L ++
Sbjct: 80 IRPVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLL--MDLGFSR 136
Query: 137 KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NG 191
++ +SGGQ R+I+ L NP +++LDEPT GLDP + + LK +
Sbjct: 137 DVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDEN 196
Query: 192 KTIIITTHYIEE-AKGAHNIGLMRDDQYI 219
KTII+ +H + E A+ A + +M++ +
Sbjct: 197 KTIILVSHDMNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-14
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 16/159 (10%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------DIGYMPQELALHGELSIRE 103
GP+G GKTTLL + G DAG + I + Y+ + + EL+ E
Sbjct: 35 GPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALE 94
Query: 104 TFRYYGYMFDMTDDQIETRSKEILKL---LELPPAKKIVGALSGGQQRRISFAVSLLHNP 160
++ + + + L +LP VG LS GQQRR++ A L
Sbjct: 95 NLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP-----VGQLSAGQQRRVALARLWLSPA 149
Query: 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
L ILDEP LD ++ + A G +++TTH
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTH 188
|
Length = 209 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-14
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 39/226 (17%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-------GRNTLDA---GTIKLSF-- 80
V+L ++L + ++ G++G SG GK+TL I GR +D ++
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLR 75
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL-------LELP 133
RQ+ G + QE L SIR+ M R E KL ELP
Sbjct: 76 RQV---GVVLQENVLFNR-SIRDNIALADPGMSME------RVIEAAKLAGAHDFISELP 125
Query: 134 PA-KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
IVG LSGGQ++RI+ A +L+HNP++LI DE T LD I + ++
Sbjct: 126 EGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI- 184
Query: 189 LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
G+T+II H + K A I +M GR+V + L+
Sbjct: 185 CAGRTVIIIAHRLSTVKNADRIIVM----EKGRIVEQGSHDELLAE 226
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 3e-14
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 46/237 (19%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI---------------- 65
++ Y I + +LK + + +P N I+G++GPSG GK+TLL +
Sbjct: 13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK 72
Query: 66 ---VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD-QIET 121
G++ IKL ++G + Q+ LSI + Y + + +I+
Sbjct: 73 VLYFGKDIFQIDAIKLR----KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKK 128
Query: 122 RSKEILKLLEL---------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
+E L+ + L PA + LSGGQQ+R++ A +L PK+L++DEPT +
Sbjct: 129 IVEECLRKVGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEPTSMI 184
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
D + SQ I + E+ N I+I +H ++ R Y+ L + ++VE
Sbjct: 185 DIVNSQAIEKLITELK-NEIAIVIVSHNPQQVA--------RVADYVAFLYNGELVE 232
|
Length = 257 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-14
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 42/201 (20%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI----SD 85
L ++L+ N+I L+GPSG GK+TLL I N L+ G+I + I +D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 86 IGYMPQELALHGE------LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+ +E+ + + +SI E Y + + D Q+ + E K +
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVE----------KSLK 130
Query: 140 GA----------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
GA LSGGQQ+R+ A L +PK+++LDEPT LDPI + I +
Sbjct: 131 GASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEET 190
Query: 184 LKEMALNGKTIIITTHYIEEA 204
L + + T+++ T +++A
Sbjct: 191 LLGLK-DDYTMLLVTRSMQQA 210
|
Length = 252 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-14
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 33/197 (16%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLD----AGTIKLSFRQISDIGYM 89
L ++L++PE + +GPSGCGK+T L C+ N T+D G I L I D
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 90 PQEL-ALHGEL---------SIRETFRY----YGYMFDMTD-DQIETRS-------KEIL 127
EL A G + SI E Y +G + D+I S +E+
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 128 KLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L P LSGGQQ+R+ A ++ +P+++++DEP LDPI + + + + E+
Sbjct: 155 DRLHEPGT-----GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209
Query: 188 ALNGKTIIITTHYIEEA 204
N TI+I TH +++A
Sbjct: 210 RQN-YTIVIVTHSMQQA 225
|
Length = 267 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 3e-14
Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 23/184 (12%)
Query: 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP-------- 90
+LNV + +I ++GPSG GK+TLLN I G +G+IK++ S G P
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN--DQSHTGLAPYQRPVSML 75
Query: 91 -QELALHGELSIRETFR---YYGYMFD-MTDDQIE--TRSKEILKLLELPPAKKIVGALS 143
QE L L++R+ + G + +++ + I L+ P LS
Sbjct: 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIE 202
GGQ++R++ A L+ +L+LDEP LDP+L + + +K++ + T+++ TH++
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 203 EAKG 206
+A+
Sbjct: 191 DARA 194
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-14
Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 31/231 (13%)
Query: 2 RKISIKR--IDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKT 59
+K+ + D I+ VK+ V K+ V L ++ +NKIY ++G SG GK+
Sbjct: 8 KKLKVPNPLSDDIILRVKNLYCVFDE-KQENELVALNNISYTFEKNKIYFIIGNSGSGKS 66
Query: 60 TLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR---ETFRYYGYMFDMTD 116
TL+ G GTI++ I D + + I+ E R +F +
Sbjct: 67 TLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPE 126
Query: 117 DQI--ETRSKEI------LKLLELPPAKKI------VG-----------ALSGGQQRRIS 151
Q+ +T K+I L + + K +G LSGGQ+RR++
Sbjct: 127 YQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVA 186
Query: 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
A L P++LI DEPT GLDP + + + N KT+ + TH +E
Sbjct: 187 IAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME 237
|
Length = 320 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (174), Expect = 4e-14
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 24/194 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------------KL 78
VL LNL++ NK+ +GPSGCGK+T L + N L GT K+
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 79 SFRQI-SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-ETRSKEILKLLEL---- 132
S ++ + IG + Q+ E+SI + Y + D +I E ++ LK L
Sbjct: 157 SSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV 215
Query: 133 -PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
K ALSGGQQ+R+ A ++ P++L++DEPT LDPI + I + + E+
Sbjct: 216 KDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK-KK 274
Query: 192 KTIIITTHYIEEAK 205
+III TH + +A+
Sbjct: 275 YSIIIVTHSMAQAQ 288
|
Length = 329 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-14
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 31/224 (13%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL----------SFRQISDIG 87
+L VP +I +LGPSG GK+TLLN I G T +G I + + R +S +
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77
Query: 88 YMPQELALHGELSIRETF---RYYGYMFDMTD----DQIETRSKEILKLLELPPAKKIVG 140
QE L L++ + G + + + L LP G
Sbjct: 78 ---QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP------G 128
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTH 199
LSGGQ++R++ A L+ +L+LDEP LDP L + + ++ T+++ TH
Sbjct: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTH 188
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLV-EALEDALRHG 242
+ E+A + + D+ GR+ + L+ A G
Sbjct: 189 HPEDAARIADRVVFLDN---GRIAAQGSTQELLSGKASAAALLG 229
|
Length = 231 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 4e-14
Identities = 60/225 (26%), Positives = 112/225 (49%), Gaps = 24/225 (10%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISD 85
K G VVL ++L++P+ I ++GP+G GK+TLL+ ++ R D+G I + +++
Sbjct: 9 KSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLKKDSGEITIDGLELTS 67
Query: 86 ---------IGYMPQELALHGELSIRE--TFRYYGY---MFDMTDDQIETRSKEILKLLE 131
+ + QE ++ L++R+ F + Y D +I + E L L +
Sbjct: 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 132 LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN- 190
L + + + LSGGQ++R A+ L + ++LDEP LD S I L+ +A
Sbjct: 128 L--SDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADEL 185
Query: 191 GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
GKTI++ H I A + +I +++ G++V + +++
Sbjct: 186 GKTIVVVLHDINFASCYSDHIVALKN----GKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-14
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 42/206 (20%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAG 74
+ + + K+ G VL L+L++P + ++G SGCGK+TLL + G T L AG
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 75 TIKLSFRQISDIGYMPQELAL--------HGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
T L+ + D M Q+ L + L ++ +R + +
Sbjct: 73 TAPLAEAR-EDTRLMFQDARLLPWKKVIDNVGLGLKGQWR--------------DAALQA 117
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQII- 180
L + L A + ALSGGQ++R++ A +L+H P LL+LDEP LD + + +I
Sbjct: 118 LAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177
Query: 181 --WDRLKEMALNGKTIIITTHYIEEA 204
W + +G T+++ TH + EA
Sbjct: 178 SLWQQ------HGFTVLLVTHDVSEA 197
|
Length = 257 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 5e-14
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 15/180 (8%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--IKLSFRQISDIGYM 89
H L ++ VPE +I G++G +G GK+TL N I G + GT IK S I+ I
Sbjct: 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIA-ISS- 94
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI---VGALSGGQ 146
L+G+L+ E G M +T ++I+ EI++ ++ K I V S G
Sbjct: 95 ----GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADI--GKFIYQPVKTYSSGM 148
Query: 147 QRRISFAVSLLHNPKLLILDEP-TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
+ R+ FA+S+ NP +L++DE +VG D ++ D++ E GKTI +H + + K
Sbjct: 149 KSRLGFAISVHINPDILVIDEALSVG-DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVK 207
|
Length = 549 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 5e-14
Identities = 57/191 (29%), Positives = 101/191 (52%), Gaps = 25/191 (13%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL- 93
L +N+++P ++G +G GK+TLL + G +GT+ + R I+ G ++L
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA-GKKNKKLK 81
Query: 94 ALHGELSI----------RETFRY---YGYM-FDMTDDQIETRSKEILKLLELPPA--KK 137
L ++ I ET +G M F ++++ + +++E+++L+ LP +
Sbjct: 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLAR 141
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD---RL-KEMALNGKT 193
LSGGQ RR++ A L P++L+LDEPT GLDP + + + +L KE L T
Sbjct: 142 SPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL---T 198
Query: 194 IIITTHYIEEA 204
++ TH +E+A
Sbjct: 199 TVLVTHSMEDA 209
|
Length = 290 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 7e-14
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 24/176 (13%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISD 85
+G +LKG+NL + + +++ L+GP+G GK+TL I+G + G I I+D
Sbjct: 9 SVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITD 68
Query: 86 IGYMPQELALHG-ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSG 144
+ P+E A G L+ + G ++ + L+ + G SG
Sbjct: 69 LP--PEERARLGIFLAFQYPPEIPG-----------VKNADFLRYVN-------EG-FSG 107
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
G+++R LL P L ILDEP GLD +++ + + ++ GK+++I THY
Sbjct: 108 GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHY 163
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-14
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 29/205 (14%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
VT +Y G +K + ++P K+ L+GPSGCGK+T+L + N L G L R
Sbjct: 19 VTISY---GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGC-SLKGR 74
Query: 82 QISD-----------------IGYMPQELALHGELSIRETF----RYYGYMFDMTDDQIE 120
+ D IG + Q+ + SI E R GY DM D+ +E
Sbjct: 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDM-DELVE 132
Query: 121 TRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
++ E G +LSGGQQ+R+ A ++ P+++++DEP LDPI +
Sbjct: 133 RSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLK 192
Query: 180 IWDRLKEMALNGKTIIITTHYIEEA 204
I + + E+ N TI+I TH +++A
Sbjct: 193 IEETMHELKKN-FTIVIVTHNMQQA 216
|
Length = 269 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 9e-14
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 34/190 (17%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
++ GL+ + ++ + GP+G GKT+LL + G DAG + I
Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE 71
Query: 86 -------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE------- 131
+G+ P + EL+ E R+Y + DD+ + + L
Sbjct: 72 YHQDLLYLGHQP---GIKTELTALENLRFYQRLHGPGDDE------ALWEALAQVGLAGF 122
Query: 132 --LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+P V LS GQQRR++ A L L ILDEP +D + L + A
Sbjct: 123 EDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE 177
Query: 190 NGKTIIITTH 199
G +I+TTH
Sbjct: 178 QGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 1e-13
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 35/169 (20%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
V+LK L+ + + GPSG GK++L + G +G I + D+ ++P
Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLP 70
Query: 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRI 150
Q Y+ T +E L + P + LSGG+Q+R+
Sbjct: 71 QR----------------PYLPLGT-------LREQL----IYPWDDV---LSGGEQQRL 100
Query: 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+FA LLH PK + LDE T LD ++ LKE+ G T+I H
Sbjct: 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGH 146
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-13
Identities = 60/194 (30%), Positives = 99/194 (51%), Gaps = 29/194 (14%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISD------ 85
+L L+L P K+ GL+G +G GK+TLL ++GR+ G I L + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGRHQPPSEGEILLDAQPLESWSSKAF 83
Query: 86 ---IGYMPQELALHGELSIRETF---RY--YGYM--FDMTDDQIETRSKEILKLLELPP- 134
+ Y+PQ+L +++RE RY +G + F D + + +E + L+ L P
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADRE---KVEEAISLVGLKPL 140
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI----IWDRLKEMALN 190
A ++V +LSGG+++R A+ + + + L+LDEPT LD I Q+ + RL +
Sbjct: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD-IAHQVDVLALVHRLSQ--ER 197
Query: 191 GKTIIITTHYIEEA 204
G T+I H I A
Sbjct: 198 GLTVIAVLHDINMA 211
|
Length = 265 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 67/216 (31%), Positives = 103/216 (47%), Gaps = 27/216 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTI-----KL 78
K G L ++L V +I L G +G GK+TL+ + G T + G I +L
Sbjct: 13 KTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYE-GEIIFEGEEL 71
Query: 79 SFRQISD-----IGYMPQELALHGELSIRETF------RYYGYMFDMTDDQIETRSKEIL 127
I D I + QELAL ELS+ E G M D + R++++L
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIM---DYDAMYLRAQKLL 128
Query: 128 KLLEL--PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
L+L PA VG L GQQ+ + A +L +LLILDEPT L + ++ D ++
Sbjct: 129 AQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187
Query: 186 EMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
++ +G I +H + E K + I ++RD ++IG
Sbjct: 188 DLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG 223
|
Length = 506 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-13
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 13 IIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
IIEV H S V ++ +LKG+ L V + ++GPSG GK+TLL + G +
Sbjct: 6 IIEVHHLSKTVGQGEGELS---ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP 62
Query: 72 DAGTIKLSFRQISD-------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118
+G ++L + + +G++ Q L L+ E + +
Sbjct: 63 SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSAD 122
Query: 119 IETRSKEILKLLELPPAKKIV---GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
+K +L+ + L K++ LSGG+Q+R++ A + P +L DEPT LD
Sbjct: 123 SRAGAKALLEAVGL--GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 176 LSQIIWDRLKEMALN---GKTIIITTH 199
I D L ALN G T+++ TH
Sbjct: 181 TGDKIADLL--FALNRERGTTLVLVTH 205
|
Length = 228 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-13
Identities = 56/196 (28%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL---LNCIVGR--NTLDAGTIKLSFRQIS 84
G LK +NL++ EN++ ++GPSGCGK+T LN +V + G I + I
Sbjct: 35 GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIF 94
Query: 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA--- 141
D Y +EL + + ++ + ++D + + K L+ K + GA
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW 154
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
LSGGQQ+R+ A L P ++++DEPT LDPI + + + ++E+
Sbjct: 155 DELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK 214
Query: 189 LNGKTIIITTHYIEEA 204
+ +III TH +++A
Sbjct: 215 KD-YSIIIVTHNMQQA 229
|
Length = 271 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 2e-13
Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 22/188 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---KLSF---------- 80
+L+G+++ + ++K+ ++GPSGCGK+T L C+ N L++ ++ F
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV 81
Query: 81 ------RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134
RQ+S + P + ++ + G+ + D I + + L +
Sbjct: 82 NLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK 141
Query: 135 AK--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
K K LSGGQQ+R+ A +L PK+L++DEP GLDPI S + ++ + L +
Sbjct: 142 HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSE 201
Query: 193 -TIIITTH 199
T++I +H
Sbjct: 202 LTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 2e-13
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 19/191 (9%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFR 81
GN + ++L VP KI ++GPSG GKTTLL I G+ D G I +S
Sbjct: 18 GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRS 77
Query: 82 QISD----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL--LELPPA 135
++ + + Q AL ++++ + Y + S ++KL + L A
Sbjct: 78 RLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL-LHSTVMMKLEAVGLRGA 136
Query: 136 KKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM--ALNGK 192
K++ + LSGG RR + A ++ P L++ DEP VG DPI ++ + E+ AL G
Sbjct: 137 AKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GV 195
Query: 193 TIIITTHYIEE 203
T ++ +H + E
Sbjct: 196 TCVVVSHDVPE 206
|
Length = 269 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 22/172 (12%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ + + K G VL ++L++P ++ LLGPSG GKTTLL I G +G I+
Sbjct: 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF 61
Query: 79 SFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMT---------DDQIETR 122
+S +G++ Q AL +++ + F +T I+ +
Sbjct: 62 HGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNI-----AFGLTVLPRRERPNAAAIKAK 116
Query: 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
++L++++L A + LSGGQ++R++ A +L P++L+LDEP LD
Sbjct: 117 VTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-13
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 41/179 (22%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++IE ++ ++ ++ G+ +++ L+ ++P I G++GP+G GK+TL I G+
Sbjct: 323 KVIEAEN---LSKSF---GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376
Query: 72 DAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYYGYMFDMTD--DQIETRSKEILK 128
D+GTIK+ + + Y+ Q AL ++ E +++ D I+ ++EI
Sbjct: 377 DSGTIKIG--ETVKLAYVDQSRDALDPNKTVWE---------EISGGLDIIKVGNREI-- 423
Query: 129 LLELPPAK--------------KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
P++ K VG LSGG++ R+ A +L +L+LDEPT LD
Sbjct: 424 -----PSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 2e-13
Identities = 59/199 (29%), Positives = 99/199 (49%), Gaps = 30/199 (15%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------VGRNTLDAGTI-- 76
NH V K ++++ PEN + ++GPSGCGK+T+L I G+ LD I
Sbjct: 17 NHAV-KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75
Query: 77 ----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD------MTDDQIETRSKEI 126
+S R+ +G + Q+ +SI + GY + D+ +E+ K +
Sbjct: 76 RGVDPVSIRR--RVGMVFQKPNPFPAMSIYDNV-IAGYKLNGRVNRSEADEIVESSLKRV 132
Query: 127 LKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
E+ K LSGGQQ+R+ A ++ P+++++DEP LDPI + I + ++
Sbjct: 133 ALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 186 EMALNGKTIIITTHYIEEA 204
E+ TIII TH +++A
Sbjct: 193 ELK-EKYTIIIVTHNMQQA 210
|
Length = 252 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 33/206 (16%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
L +N+ + + + GL+G +G GK+TL+ + G +G I I + ++
Sbjct: 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI-----IIDGVDITDKK 75
Query: 93 LALHGELSIRE----TFRYYGY-MFDMT---------------DDQIETRSKEILKLLEL 132
+ L IR+ F+Y Y +F+ T +++IE R K + ++ L
Sbjct: 76 VKLS---DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132
Query: 133 PPAK---KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
K LSGGQ+RR++ A + PK+LILDEPT GLDP I +++KE+
Sbjct: 133 DYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192
Query: 190 NGK-TIIITTHYIEE-AKGAHNIGLM 213
TII+ +H +E+ AK A I +M
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVM 218
|
Length = 287 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 45/187 (24%)
Query: 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96
+NL V E +I L+GP+G GKTT+ NC+ G GTI L + I G ++A
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIE--GLPGHQIARM 80
Query: 97 GELSIRETFRYYGYMFDMT---------DDQIET-------------RSK---------- 124
G + TF++ +MT Q++T R++
Sbjct: 81 G---VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 125 -EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQI 179
E + LLE A + G L+ GQQRR+ A ++ P++L+LDEP GL+P L ++
Sbjct: 138 LERVGLLEH--ANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDEL 195
Query: 180 IWDRLKE 186
I L+
Sbjct: 196 I-AELRN 201
|
Length = 255 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-13
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 27/196 (13%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQIS 84
++ +L +N + + +I L+GPSGCGK+TLL+ ++G G + L+ +++
Sbjct: 11 RLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD 70
Query: 85 -------DIGYMPQELALHGELSIRETFRYYGYMFDMTDD-QIETRSKEILKLLE----L 132
IG + Q+ L LS+ + +F + + R LE
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNL-----LFALPATLKGNARRNAANAALERSGLD 125
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL----SQIIWDRLKEMA 188
+ LSGGQ+ R++ +LL PK L+LDEP LD L Q ++ ++
Sbjct: 126 GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAG 185
Query: 189 LNGKTIIITTHYIEEA 204
+ + TH +++
Sbjct: 186 I---PTVQVTHDLQDV 198
|
Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-13
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 17/204 (8%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
VT AY + +VL+ ++ + ++ L+GPSG GK+T++ + G + L +
Sbjct: 17 VTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK 76
Query: 82 QISD---------IGYMPQELALHGELSIRETFRY--YGYMFDM-TDDQIETRSKEILKL 129
IS + + QE L S+++ Y F+ + + + +
Sbjct: 77 PISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISE 135
Query: 130 LELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
L + LSGGQ++R++ A +L+ NP++LILDE T LD Q + L +
Sbjct: 136 LASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD 195
Query: 187 MALNGKTIIITTHYIEEAKGAHNI 210
+T+++ H + + A I
Sbjct: 196 -WPERRTVLVIAHRLSTVERADQI 218
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-13
Identities = 65/237 (27%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------VGRNTLDAGTI- 76
G+ +K +NL+V + L+GPSGCGKTT L I GR LD I
Sbjct: 15 GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIY 74
Query: 77 -----KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD----QIETRS---- 123
++ R+ +G + Q+ +S+ + + + D ++ RS
Sbjct: 75 GPRVDPVAMRR--RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 124 ---KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
E+ L+ P LSGGQQ+R+ A +L P++L++DEPT LDP + I
Sbjct: 133 ALWDEVKDRLKTPAT-----GLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
Query: 181 WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
D + ++ TIII TH + +A + +G LV H + L D
Sbjct: 188 EDLMTDLK-KVTTIIIVTHNMHQAARVSDTTSFF---LVGDLVEHGPTDQLFTNPRD 240
|
Length = 252 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-13
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-- 85
G+ +L ++L+V + + GPSGCGK+TLL + + +GT+ +S
Sbjct: 12 LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLK 71
Query: 86 -------IGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPPA-- 135
+ Y Q AL G+ ++ + + + D + ++L LP +
Sbjct: 72 PEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPD---RAAALDLLARFALPDSIL 127
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
K + LSGG+++RI+ +L PK+L+LDE T LD
Sbjct: 128 TKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166
|
Length = 223 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 3e-13
Identities = 75/253 (29%), Positives = 128/253 (50%), Gaps = 28/253 (11%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSFR-----QIS 84
L G LNV ++ L+G +G GK+T++ + G T DAG+I +++F Q +
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 85 DIGYMPQELALHGELSIRETF---RYYGYMFDMTD-DQIETRSKEILKLLELP-PAKKIV 139
IG + QEL L +L+I E R + F D ++ + ++L L L + K+V
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV 139
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
G LS G+Q+ + A L K++I+DEPT L ++ ++ ++E+ G+ I+ +H
Sbjct: 140 GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
Query: 200 YIEEA-KGAHNIGLMRDDQYIGRLVHHDIVE-SLVE-----ALED-----ALRHGNVINK 247
++E + ++ + RD Q+I D+ E SL+E LED G V K
Sbjct: 200 RLKEIFEICDDVTVFRDGQFIAEREVADLTEDSLIEMMVGRKLEDQYPRLDKAPGEVRLK 259
Query: 248 VDLVDGRGSIDEV 260
VD + G G +++V
Sbjct: 260 VDNLSGPG-VNDV 271
|
Length = 501 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 4e-13
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-------------LSF 80
VLKGLNL+ + + GL+G +GCGK+TL + G G + L+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 81 RQ-ISDIGYMPQELALHGELS--IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK- 136
RQ ++ + P++ + ++ I + R G + + +I R E L L++ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG----VPEAEITRRVDEALTLVDAQHFRH 131
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
+ + LS GQ++R++ A +L+ + L+LDEPT GLDP + ++ + G +II
Sbjct: 132 QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVII 191
Query: 197 TTHYIE 202
++H I+
Sbjct: 192 SSHDID 197
|
Length = 271 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 4e-13
Identities = 54/166 (32%), Positives = 86/166 (51%), Gaps = 20/166 (12%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
AV +Y G V+KG++L+V + + L+GPSGCGK+TLL + G + +G I +
Sbjct: 8 AVRKSYD--GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGG 65
Query: 81 RQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL- 132
R ++ DI + Q AL+ +S+RE Y + M +IE R E ++LEL
Sbjct: 66 RVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE 125
Query: 133 -----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
P LSGGQ++R++ +++ P + + DEP LD
Sbjct: 126 PLLDRKPR-----ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 4e-13
Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 37/204 (18%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV------------------GRNTL 71
G+ ++ +NLN+ + +GPSGCGK+T+L + G +
Sbjct: 15 GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLY 74
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRET----FRYYGYMFDMTDDQIETRS---- 123
G ++ R IG + Q +SIR+ + G D++ +S
Sbjct: 75 GPGVDPVAVR--RTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGA 132
Query: 124 ---KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
E+ L+ P G LSGGQQ+R+ A ++ P +L++DEP LDPI + I
Sbjct: 133 NLWNEVKDRLDKPG-----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAI 187
Query: 181 WDRLKEMALNGKTIIITTHYIEEA 204
D + E+ TI+I TH +++A
Sbjct: 188 EDLINELK-QDYTIVIVTHNMQQA 210
|
Length = 258 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 6e-13
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL------------NCIVGRNTLDAGTIK 77
G + LK +N+ V E ++ L+GPSGCGK+T L N G L +
Sbjct: 27 GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86
Query: 78 LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKK 137
+ ++ P E+ + + ++ + +F+ + R + +LE
Sbjct: 87 ILSPEVD-----PIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENA 141
Query: 138 IVGA----------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+ A LSGGQQ+R+ A +L +P++L+ DEPT LDPI + I
Sbjct: 142 LRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIE 201
Query: 182 DRLKEMALNGKTIIITTHYIEEA 204
+ + ++ N TI+I TH +++A
Sbjct: 202 ELISDLK-NKVTILIVTHNMQQA 223
|
Length = 265 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 6e-13
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 29/244 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE + V+ +Y + VLKGL + ++ L+GPSG GK+T+ +
Sbjct: 479 IEFQD---VSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 74 GTIKLSFRQISDIG--YMPQELALHGEL------SIRETFRYYGYMFDMTDDQIETRSKE 125
G + L + Y+ +++AL G+ S+RE Y + D D++I +K
Sbjct: 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYG--LTDTPDEEIMAAAKA 593
Query: 126 ILK---LLELPPAKKIV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
++E P LSGGQ++RI+ A +L+ P++LILDE T LD
Sbjct: 594 ANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECE 653
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
Q++ + + +T+++ H + + A I +++ + H ++E +
Sbjct: 654 QLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-----QG 705
Query: 238 ALRH 241
+H
Sbjct: 706 CYKH 709
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 7e-13
Identities = 60/214 (28%), Positives = 96/214 (44%), Gaps = 28/214 (13%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------ 65
I+EVK S Y G + +++++ ++ + L+GPSGCGK+T L I
Sbjct: 20 HILEVKD----LSIY--YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL 73
Query: 66 ------------VGRNTLDAGTIKLSFR-QISDIGYMPQELALHGELSIRETFRYYGYMF 112
G N LD+ ++ R +I + P +I +Y G
Sbjct: 74 IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERR 133
Query: 113 DMTDDQI--ETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
D+I E+ +K L +LSGGQQ+R+ A +L P +L+LDEP
Sbjct: 134 KSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPAS 193
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204
LDPI + I + + E+ +III TH +++A
Sbjct: 194 ALDPISNAKIEELITELK-EEYSIIIVTHNMQQA 226
|
Length = 268 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 8e-13
Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 22/214 (10%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-------- 85
L ++L + + L+G SG GK+TL+N I D+G I L ++D
Sbjct: 347 ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRR 406
Query: 86 -IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE----LP-----PA 135
+ + Q++ L + +I Y G +IE R+ + LP P
Sbjct: 407 QVALVSQDVVLFND-TIANNIAY-GRTEQADRAEIE-RALAAAYAQDFVDKLPLGLDTPI 463
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
+ LSGGQ++R++ A +LL + +LILDE T LD +++ L+ + + G+T +
Sbjct: 464 GENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL-MQGRTTL 522
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
+ H + + A I +M D + + R H++++
Sbjct: 523 VIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-13
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 28/192 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIK-------------- 77
+LKG+NL V + +I+ ++GP+G GK+TL I G + + +GTI
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 78 ------LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
L+F+ +I + L L+ R R + K L LL
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNAR---RSARGEEPLDLLDFLKLLKAKLALLG 131
Query: 132 LPPA---KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ + + SGG+++R L PKL ILDE GLD +I+ + + +
Sbjct: 132 MDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR 191
Query: 189 LNGKTIIITTHY 200
++ +I THY
Sbjct: 192 EPDRSFLIITHY 203
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-12
Identities = 53/187 (28%), Positives = 91/187 (48%), Gaps = 20/187 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---------F 80
G +++ G+++ P + GLLGP+G GK+TLL + G DAGT+ L+
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 81 RQISDIGYMPQELALHGELSIRET-------FRYYGYMFDMTDDQIETRSKEILKLLELP 133
+ + + Q+ L++R+ R D + R+ +L L
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL- 130
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNGK 192
A + + LSGG+++R+ A +L PKLL+LDEPT LD + +Q+ ++E+A G
Sbjct: 131 -ADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLD-VRAQLETLALVRELAATGV 188
Query: 193 TIIITTH 199
T++ H
Sbjct: 189 TVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 29/172 (16%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALH-GELSIRET--- 104
L+GP+G GK+TLL + G L +G+I+ + + + + ELA H LS ++T
Sbjct: 27 LVGPNGAGKSTLLARMAG--LLPGSGSIQFAGQPLEA--WSAAELARHRAYLSQQQTPPF 82
Query: 105 ----FRYYG-YMFDMTD-DQIETRSKEILKLLELPPAKKI---VGALSGGQQRRISFAVS 155
F+Y + D T + + + E+ + L L K+ V LSGG+ +R+ A
Sbjct: 83 AMPVFQYLTLHQPDKTRTEAVASALNEVAEALGL--DDKLGRSVNQLSGGEWQRVRLAAV 140
Query: 156 LLH-----NP--KLLILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTH 199
+L NP +LL+LDEP LD + Q DRL E+ G +++++H
Sbjct: 141 VLQVWPDINPAGQLLLLDEPMNSLD-VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-12
Identities = 52/194 (26%), Positives = 97/194 (50%), Gaps = 21/194 (10%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--- 78
VT ++ H L+ + VP I L+G +G GK+TL ++G L +G I +
Sbjct: 12 VTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ 69
Query: 79 ----SFRQISDIGYMPQ--ELALHGELSIRETFRY--YGYMFDMT-----DDQIETRSKE 125
+ ++ + + Y+PQ E+ + + + YG+M + D QI T +
Sbjct: 70 PTRQALQK-NLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALA 128
Query: 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ ++E + +G LSGGQ++R+ A ++ ++++LDEP G+D I L+
Sbjct: 129 RVDMVEF--RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186
Query: 186 EMALNGKTIIITTH 199
E+ GKT++++TH
Sbjct: 187 ELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 2e-12
Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 23/210 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------- 84
L ++ + E L+G +G GK+TL+ +GTI ++ I+
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 85 ---DIGYMPQ--ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKK 137
+ + Q E L E ++ + + F ++D+ + ++ + LK + L K
Sbjct: 83 LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISK 141
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGGQ RR++ A + + P++L LDEP GLDP + + K+ G T+I+
Sbjct: 142 SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201
Query: 198 THYIEE-AKGAHNIGLMRDDQYIGRLVHHD 226
TH +++ A+ A ++ ++ G+L+ H
Sbjct: 202 THNMDDVAEYADDVLVLEH----GKLIKHA 227
|
Length = 287 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-12
Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 25/206 (12%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV--VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70
I+EV H G H +L G+ L V + L+G SG GK+TLL + G +
Sbjct: 6 IVEVHH----LKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD 61
Query: 71 LDAGTIKLSFRQIS-------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117
+G + L + + +G++ Q L L+ E + +
Sbjct: 62 GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSR 121
Query: 118 QIETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
Q +K +L+ L L + A LSGG+Q+R++ A + P +L DEPT LD
Sbjct: 122 QSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
Query: 177 SQIIWDRLKEMALN---GKTIIITTH 199
I D L +LN G T+I+ TH
Sbjct: 182 GDKIADLL--FSLNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-12
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 24/167 (14%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG 87
++G +L ++L + ++ +LGP+G GK+TLL + G + D+G ++L+ R ++D
Sbjct: 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD-- 68
Query: 88 YMPQELAL-------HGELS----IRETF---RYYGYMFDMTDDQIETRSKEILKLLELP 133
+ P ELA H LS + E R + DD + + + L L
Sbjct: 69 WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL- 127
Query: 134 PAKKIVGALSGGQQRRISFAVSLL------HNPKLLILDEPTVGLDP 174
A + LSGG+Q+R+ A L P+ L+LDEPT LD
Sbjct: 128 -AGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-12
Identities = 58/231 (25%), Positives = 104/231 (45%), Gaps = 41/231 (17%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ K G + ++ ++ ++ G++G SG GK+TLL C+ GR D GT R
Sbjct: 6 VSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR 65
Query: 82 QI------------------SDIGYMPQEL-----------ALHGELSIRETFRYYGYMF 112
++ G++ Q A GE + R+YG
Sbjct: 66 SGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG--- 122
Query: 113 DMTDDQIETRSKEILKLLELPPAK--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
I +++ L+ +E+ P + + A SGG Q+R+ A +L+ P+L+ +DEPT
Sbjct: 123 -----NIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177
Query: 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAK-GAHNIGLMRDDQYI 219
GLD + + D L+ + + G +II TH + A+ A + +M+ + +
Sbjct: 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVV 228
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-12
Identities = 57/191 (29%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
V+ AY +G L+G+ ++ ++ L G SG GK+TLL I G AG I S
Sbjct: 7 VSKAY--LGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH 64
Query: 82 QIS------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-SKEILK 128
I+ IG + Q+ L + ++ + + + D I R S + K
Sbjct: 65 DITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124
Query: 129 LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+ L AK LSGG+Q+R+ A ++++ P +L+ DEPT LD LS+ I +E
Sbjct: 125 VGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 189 LNGKTIIITTH 199
G T+++ TH
Sbjct: 185 RVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 4e-12
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L L+L V ++ ++GP+G GKTT+++ I G+ D G++ F G ++A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL--FGGTDLTGLPEHQIA 75
Query: 95 LHG--------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134
G EL++ + +F + + R +E+L+ + L
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
A ++ G LS GQ++ + + L+ +PKLL+LDEP G+
Sbjct: 136 EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-12
Identities = 49/185 (26%), Positives = 95/185 (51%), Gaps = 16/185 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------DIGY 88
L +NL + + +G +G GK+T++ + G + G++++ I+ DI
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 89 MPQELALHGELSIRETFR-------YYGYM-FDMTDDQIETRSKEILKLLELPPA--KKI 138
+ +++ L + + F +G F ++ ++ E ++E L L+ + + +K
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKN 142
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT 198
LSGGQ RR++ A L PK+L+LDEPT GLDP + + K++ +G TI++ T
Sbjct: 143 PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
Query: 199 HYIEE 203
H +++
Sbjct: 203 HLMDD 207
|
Length = 280 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 6e-12
Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 40/181 (22%)
Query: 30 GNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88
+LK ++L+ P KI G+LG +G GK+TLL + G + G + + +GY
Sbjct: 16 PKKEILKDISLSFFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFNGEARPA--PGIKVGY 72
Query: 89 MPQELALHGELSIRETF------------RYYG-YM-FDMTDDQIETRSKEILKL----- 129
+PQE L ++RE R+ F D ++ E +L
Sbjct: 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIID 132
Query: 130 -----------------LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
L PP V LSGG++RR++ LL P +L+LDEPT L
Sbjct: 133 AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHL 192
Query: 173 D 173
D
Sbjct: 193 D 193
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 6e-12
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------------------VGRNTLDAG-T 75
++G+++++ NK+ ++GPSGCGK+T + + G+N D
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 76 IKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA 135
I RQI + P + ++ R + D+I + + L +
Sbjct: 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD 142
Query: 136 K--KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
K K LSGGQQ+R+ A +L PK+L++DEP LDPI + + + + + + T
Sbjct: 143 KLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-SELT 201
Query: 194 IIITTHYIEEAKGAHNIG--LMRDDQYIGRLVHHDIVESL 231
I I TH +++A + D+ IG++V + +
Sbjct: 202 IAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQI 241
|
Length = 259 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 6e-12
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 30/195 (15%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------- 84
L +N+ + +N I L+GPSGCGK+T L + N L G IK+ I
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNIYSNNF 81
Query: 85 DIGYMPQELALHGE------LSIRETFRYYGYMFDMTD----DQIETRSKEILKLLELPP 134
DI + +++ + + +SI + Y + D D+I +S + L
Sbjct: 82 DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK 141
Query: 135 AKKIVGALS--GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
K ALS GGQQ+R+ A +L P ++++DEPT LDPI + +++E+ +N K
Sbjct: 142 DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIST----GKIEELIINLK 197
Query: 193 ---TIIITTHYIEEA 204
TIII TH +++A
Sbjct: 198 ESYTIIIVTHNMQQA 212
|
Length = 254 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-12
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 37/205 (18%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----KLSFRQI-------------SDIG 87
++ G++G SG GKTTLL CI GR T DAGT+ R + ++ G
Sbjct: 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92
Query: 88 YMPQE----LALH-------GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAK 136
++ Q L + GE + R+YG + D +E ++ ++ +LP
Sbjct: 93 FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRT- 151
Query: 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTII 195
SGG Q+R+ A +L+ P+L+ +DEPT GLD + + D L+ + G ++
Sbjct: 152 -----FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206
Query: 196 ITTHYIEEAK-GAHNIGLMRDDQYI 219
I TH + A+ A + +M+ Q +
Sbjct: 207 IVTHDLAVARLLADRLMVMKQGQVV 231
|
Length = 258 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-12
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 44/183 (24%)
Query: 30 GNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS--FRQISDI 86
+LK ++L+ P KI G+LG +G GK+TLL + G + G + + + +
Sbjct: 18 PKKQILKDISLSFFPGAKI-GVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIK----V 72
Query: 87 GYMPQELALHGELSIRETF------------RY------YGYMFDMTDDQIETRSK--EI 126
GY+PQE L E ++RE R+ Y D + + EI
Sbjct: 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEI 132
Query: 127 L----------KL------LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+ +L L PP V LSGG++RR++ LL P +L+LDEPT
Sbjct: 133 IDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTN 192
Query: 171 GLD 173
LD
Sbjct: 193 HLD 195
|
Length = 556 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 7e-12
Identities = 60/224 (26%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---- 85
G + V + L + +P+ ++GP+GCGK+TLL + T G + L I
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASK 77
Query: 86 -----IGYMPQELALHGELSIRETF---RY-YGYMFD---MTDDQIETRSKEILKLLELP 133
IG + Q G+++++E RY + +F D++ T++ + + L
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL- 136
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDRLKEM-ALNG 191
A + V LSGGQ++R A+ L +++LDEPT LD I QI + + L E+ G
Sbjct: 137 -ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD-ISHQIDLLELLSELNREKG 194
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVES-LVE 233
T+ H + +A + A ++ +R+ + + + +IV + L+E
Sbjct: 195 YTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIE 238
|
Length = 265 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 30/208 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQISDI---- 86
VLKG++L++ ++ ++G SG GK+TL+N I+G LD +GT +++ + ++ +
Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILG--CLDKPTSGTYRVAGQDVATLDADA 79
Query: 87 ---------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL----- 132
G++ Q L L+ + + Q R++E+L+ L L
Sbjct: 80 LAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE 139
Query: 133 -PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
P++ LSGGQQ+R+S A +L++ ++++ DEPT LD + + L ++ G
Sbjct: 140 YQPSQ-----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRG 194
Query: 192 KTIIITTHYIEEAKGAHNIGLMRDDQYI 219
T+II TH + A A + +RD + +
Sbjct: 195 HTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-12
Identities = 60/204 (29%), Positives = 94/204 (46%), Gaps = 38/204 (18%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS 84
G +K +N ++ + ++GPSGCGK+T L I N L G + I
Sbjct: 50 GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDI- 108
Query: 85 DIGYMPQELALHGEL------------SIRETFRYYGYMFDMTD----DQIETRS----- 123
G E+ L ++ SI + Y + + D ++I +S
Sbjct: 109 -YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAA 167
Query: 124 --KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
E+ L+ K +G LSGGQQ+R+ A +L P++L+LDEPT LDP + I
Sbjct: 168 LWDEVSDRLD----KNALG-LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIE 222
Query: 182 DRLKEMALNGK-TIIITTHYIEEA 204
D ++E L G TI+I TH +++A
Sbjct: 223 DLIQE--LRGSYTIMIVTHNMQQA 244
|
Length = 286 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 8e-12
Identities = 57/235 (24%), Positives = 100/235 (42%), Gaps = 37/235 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTIKLSFRQISDIGYMP 90
+KG++ ++ + L+G SG GK+ I+G + + F +
Sbjct: 25 AVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84
Query: 91 QEL-ALHG--------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
++L + G + E R + ++ R+ E+L+L
Sbjct: 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH---RGLSRAAARARALELLEL 141
Query: 130 LELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ +P +K + A LSGGQ++R+ A++L + P LLI DEPT LD + I D LK
Sbjct: 142 VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLK 201
Query: 186 EM-ALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
E+ A G I+ TH + + A + +M+ G +V E+L A +
Sbjct: 202 ELQAELGMAILFITHDLGIVRKFADRVYVMQH----GEIVETGTTETLFAAPQHP 252
|
Length = 534 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-12
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 26/161 (16%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-EL 93
L L+ +V ++ L+GP+G GKTTL++ I G+ G ++ F +D+ +P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG--EVLFDGDTDLTKLPEHRI 78
Query: 94 ALHG------------ELSIRETFR---------YYGYMFDMTDDQIETRSKEILKLLEL 132
A G L++RE + + ++ R E+L + L
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEE-RRRIDELLATIGL 137
Query: 133 PP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
++ LS GQ++ + + L +PKLL+LDEP G+
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 9e-12
Identities = 46/175 (26%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L G+ ++PE + ++G GCGK++LL+ ++ G + + + Y+PQ+
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMK----GSVAYVPQQAW 709
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--KKIVGA----LSGGQQR 148
+ + S+RE +G + Q + +L LE+ P+ + +G LSGGQ++
Sbjct: 710 IQND-SLRENI-LFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQ 767
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL--KEMALNGKTIIITTHYI 201
R+S A ++ N + + D+P +D + + I++ + E L KT I+ TH I
Sbjct: 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI 822
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 53/213 (24%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 10 DPEIIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
++EV+ SV K +K ++ V +I G+ G +G G++ L+ I G
Sbjct: 254 GEVVLEVEDLSV------KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL 307
Query: 69 NTLDAGTIKLSFRQI-----------SDIGYMPQELALHG---ELSIRETF---RYY--- 108
+G I L+ + + + Y+P++ HG +LS+ E R+
Sbjct: 308 RKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKP 367
Query: 109 ---GYMFDMTDDQIETRSKEILKLLEL-PPAKKI-VGALSGGQQRRISFAVSLLHNPKLL 163
G D I ++E+++ ++ P+ +LSGG Q+++ A L P LL
Sbjct: 368 FSRGGFLDR--RAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLL 425
Query: 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
I +PT GLD + I +RL E+ GK +++
Sbjct: 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLL 458
|
Length = 501 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 2e-11
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 26/163 (15%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
+++G+ L +NL +P I + G SG GKT+L+N I G G I L+ R + D
Sbjct: 8 QQLGDLC-LT-VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDA 65
Query: 86 ------------IGYMPQELALHGELSIRETFRY--YGYMFDMTDDQIETRSKEILKLLE 131
IGY+ Q+ L +R RY M D I+ LL
Sbjct: 66 EKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDK--------IVALLG 117
Query: 132 LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ P + G+LSGG+++R++ +LL P+LL++DEP LD
Sbjct: 118 IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 30/192 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK +NL + + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGR----ISFSSQFS 107
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK-------LLELPPAKKIVGA---- 141
+ G +I+E +G +D E R K ++K + + P V
Sbjct: 108 WIMPG--TIKENI-IFGVSYD------EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI 158
Query: 142 -LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKTIIITT 198
LSGGQ+ RIS A ++ + L +LD P LD + I++ K MA KT I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMA--NKTRILVT 216
Query: 199 HYIEEAKGAHNI 210
+E K A I
Sbjct: 217 SKMEHLKKADKI 228
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-11
Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 25/204 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VL ++ ++ E ++ ++G SG GK+TLL+ + G +T +G + + + +S +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSS----- 78
Query: 94 ALHGELSIRE---TFRYYGYMFDMT---------------DDQIETRSKEILKLLELPP- 134
A EL ++ ++++ + D T +I +R+ E+L + L
Sbjct: 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHR 138
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKT 193
A LSGG+++R++ A +L++NP+L++ DEPT LD + I+ L E+ L G
Sbjct: 139 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 194 IIITTHYIEEAKGAHNIGLMRDDQ 217
++ TH ++ AK MRD +
Sbjct: 199 FLVVTHDLQLAKRMSRQLEMRDGR 222
|
Length = 233 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-11
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 25/213 (11%)
Query: 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK--------------LSFRQ 82
LNL++ ++ L+G SG GK+ I+G L G + LS R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILG--LLPPGLTQTSGEILLDGRPLLPLSIRG 61
Query: 83 ISDIGYMPQE--LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
I + Q A + ++ Q E L+ + LP ++++
Sbjct: 62 R-HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLK 120
Query: 141 A----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM-ALNGKTII 195
LSGG +R+ A++LL P LI DEPT LD + + L+E+ L G I+
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGIL 180
Query: 196 ITTHYIEE-AKGAHNIGLMRDDQYIGRLVHHDI 227
+ TH + A+ A + +M D + + R +I
Sbjct: 181 LITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 6e-11
Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 117 DQIETRSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
++I R E LK + + ++ LSGGQ++R++ A L P+ +I DEPT LDP
Sbjct: 119 EEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPS 178
Query: 176 LSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215
+ + + +KE+ G TII+ THY+EEA A I +M
Sbjct: 179 GRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDS 219
|
Length = 280 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 7e-11
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 23/182 (12%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L L+ V +I L+GP+G GK+TLL + G T +G+I+ + + + + ELA
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLE--AWSATELA 71
Query: 95 LH--------GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGG 145
H + Y D ++ L L + LSGG
Sbjct: 72 RHRAYLSQQQTPPFAMPVWHYLT--LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGG 129
Query: 146 QQRRISFAVSLLH-----NP--KLLILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIIT 197
+ +R+ A +L NP +LL+LDEP LD + Q DR L + G I+++
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-VAQQSALDRLLSALCQQGLAIVMS 188
Query: 198 TH 199
+H
Sbjct: 189 SH 190
|
Length = 248 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 8e-11
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 23/190 (12%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS-- 84
G + VL+ ++ ++ + GLLG +G GK+TLL+ + R G I++ S+ +
Sbjct: 15 GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDGVSWNSVPLQ 73
Query: 85 ----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-LKLL--ELPPAKK 137
G +PQ++ + + R+ YG +D++I ++E+ LK + + P
Sbjct: 74 KWRKAFGVIPQKVFIFSG-TFRKNLDPYG---KWSDEEIWKVAEEVGLKSVIEQFPGQLD 129
Query: 138 IV-----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
V LS G ++ + A S+L K+L+LDEP+ LDPI Q+I LK+ A
Sbjct: 130 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ-AFADC 188
Query: 193 TIIITTHYIE 202
T+I++ H IE
Sbjct: 189 TVILSEHRIE 198
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (147), Expect = 9e-11
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 38/232 (16%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VL +++ P + L+GP+G GKTT L + N +G +R D+ +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG-----YRYSGDV--LLGGR 88
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL---KLLELPPAKKIVGA--------- 141
++ + E R G +F + + +L + +L P K+ G
Sbjct: 89 SIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVG 148
Query: 142 ---------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
LSGGQQ+ + A +L NP++L+LDEPT LDP ++ I + ++
Sbjct: 149 LWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS 208
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDA 238
+A II+T + + A+ + L D GRLV E L + + A
Sbjct: 209 LADRLTVIIVTHNLAQAARISDRAALFFD----GRLVEEGPTEQLFSSPKHA 256
|
Length = 276 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 32/167 (19%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L+ L++++P N + + G SG GK+TL+N + Y +
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN---------------------EGLYASGKAR 49
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAV 154
L L F +F DQ++ L L L + + LSGG+ +R+ A
Sbjct: 50 LISFLP---KFSRNKLIFI---DQLQFLIDVGLGYLTL---GQKLSTLSGGELQRVKLAS 100
Query: 155 SLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
L P L ILDEP+ GL + + +K + G T+I+ H
Sbjct: 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI------- 86
+L G++L++ ++ +LGP+G GK+TLL + G + D+G + L+ ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 87 --GYMPQELALHGELSIRETFRY----YGYMFDMTDD-QIETRSKEILKLLELPPAKKIV 139
+PQ +L +++E + + + +D +I ++ L L A +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL--AGRDY 133
Query: 140 GALSGGQQRRISFAVSL--LHNP----KLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193
LSGG+Q+R+ A L L P + L LDEPT LD +++A G
Sbjct: 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGA 193
Query: 194 IIITTH 199
++ H
Sbjct: 194 VLAVLH 199
|
Length = 259 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-10
Identities = 39/187 (20%), Positives = 70/187 (37%), Gaps = 39/187 (20%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-------------NTLDA 73
K +LK + V ++ +LG G G +TLL + R N +
Sbjct: 15 KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
+ +I Y+ +E L++RET + + + E ++
Sbjct: 75 KEFAEKYP--GEIIYVSEEDVHFPTLTVRETLDF----------ALRCKGNEFVR----- 117
Query: 134 PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA--LNG 191
+SGG+++R+S A +L+ +L D T GLD + I ++ MA L
Sbjct: 118 -------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT 170
Query: 192 KTIIITT 198
T +
Sbjct: 171 TTFVSLY 177
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 1e-10
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 18/183 (9%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS---------------FRQ 82
++L V + L+G +G GK+TLL + G G + + R+
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 83 ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA--KKIVG 140
+ + E L E +++ + F + ++ E + E L+++ L +K
Sbjct: 85 KVGVVFQFPESQLFEETVLKDV-AFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ RR++ A L P++L+LDEPT GLDP + + + +G+T+++ TH
Sbjct: 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHL 203
Query: 201 IEE 203
+++
Sbjct: 204 MDD 206
|
Length = 288 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 1e-10
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 21/221 (9%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---- 74
+V+ T A K L +L +NK+ ++G +G GK+T++ G + G
Sbjct: 11 NVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70
Query: 75 ---TIKLSFRQISDIGYMPQELALHGELSIRETFR-------YYGYMFDMTDDQIETRSK 124
I + ++I ++ + +E+ L + + F+ +G + ++ +++ E K
Sbjct: 71 GDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPV-NLGENKQEAYKK 129
Query: 125 --EILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
E+LKL++LP K+ LSGGQ+RR++ A + + L+LDEPT GLDP +
Sbjct: 130 VPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189
Query: 181 WDRLKEMALN-GKTIIITTHYIEEA-KGAHNIGLMRDDQYI 219
+ + + K II+ TH +++ + A + +M + + I
Sbjct: 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230
|
Length = 289 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-10
Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-SDIGYM 89
+ +L+ ++ ++P + L G +G GKTTLL I G + G I + I D+
Sbjct: 13 DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTY 72
Query: 90 PQELALHGE-------LSIRETFRYYGYMFDMTDDQIE--TRSKEILKLLELPPAKKIVG 140
++L G L++RE Y F I R + L++ P G
Sbjct: 73 QKQLCFVGHRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFSLEHLIDYP-----CG 126
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LS GQ+R+++ + KL +LDEP V LD + I +++E G +++T+H
Sbjct: 127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSH 185
|
Length = 200 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 2e-10
Identities = 55/195 (28%), Positives = 92/195 (47%), Gaps = 26/195 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-E 92
VLK ++ + + ++ + G +G GK++LL I+G G IK S R I + PQ
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR----ISFSPQTS 496
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PPAKKIV-----G 140
+ G +I++ +F ++ D E R ++K +L P K V
Sbjct: 497 WIMPG--TIKDNI-----IFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGI 547
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
LSGGQ+ RIS A ++ + L +LD P LD + + I++ ++ KT I+ T
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSK 607
Query: 201 IEEAKGAHNIGLMRD 215
+E K A I L+ +
Sbjct: 608 LEHLKKADKILLLHE 622
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 68/252 (26%), Positives = 109/252 (43%), Gaps = 41/252 (16%)
Query: 3 KISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
K I+R +I E ++ VT Y L+ +N +P K L+G SG GK+T+
Sbjct: 332 KRVIERAKGDI-EFRN---VTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIA 386
Query: 63 NCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI--- 119
N + +D G I L + D Y LA S+R + +D I
Sbjct: 387 NLLTRFYDIDEGEILLDGHDLRD--Y---TLA-----SLRNQVALVSQNVHLFNDTIANN 436
Query: 120 ------ETRSKE-ILKLLELPPA----KK-------IVG----ALSGGQQRRISFAVSLL 157
E S+E I + + A K ++G LSGGQ++RI+ A +LL
Sbjct: 437 IAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496
Query: 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
+ +LILDE T LD + I L E+ N +T ++ H + + A I ++ D +
Sbjct: 497 RDSPILILDEATSALDTESERAIQAALDELQKN-RTSLVIAHRLSTIEKADEILVVEDGE 555
Query: 218 YIGRLVHHDIVE 229
+ R H +++
Sbjct: 556 IVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 67/255 (26%), Positives = 115/255 (45%), Gaps = 44/255 (17%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVV--LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
II+V++ V+ Y + VV + ++L V E +I+G++G SG GKTTL I G
Sbjct: 278 PIIKVRN---VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334
Query: 70 TLDAGTIKLSFRQISD------------------IGYMPQELALHGELSIRETFRYYGYM 111
+G +++ R + IG + QE L+ ++ +
Sbjct: 335 EPTSG--EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTE-AIG 391
Query: 112 FDMTDDQIETRSKEILKLLELPPAK------KIVGALSGGQQRRISFAVSLLHNPKLLIL 165
++ D+ ++ LK++ K K LS G++ R++ A L+ P+++IL
Sbjct: 392 LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVIL 451
Query: 166 DEPTVGLDPI----LSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
DEPT +DPI ++ I +EM +T II +H ++ LMRD G
Sbjct: 452 DEPTGTMDPITKVDVTHSILKAREEM---EQTFIIVSHDMDFVLDVCDRAALMRD----G 504
Query: 221 RLVHHDIVESLVEAL 235
++V E +VE L
Sbjct: 505 KIVKIGDPEEIVEEL 519
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-10
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 23/211 (10%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG---------- 87
++L V +I GL G G G+T L + G G I L+ ++I+ +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 88 YMP---QELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKL------LELPPAKK 137
Y+P Q L+ + + + R +L+ ++ A++
Sbjct: 342 YLPEDRQSSGLYLDAPLA--WNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ 399
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG Q+++ A L +P+LLI+DEPT G+D I+ ++ +A ++
Sbjct: 400 AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI 459
Query: 198 THYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227
+ +EE + A + +M + G L I
Sbjct: 460 SSDLEEIEQMADRVLVMHQGEISGALTGAAI 490
|
Length = 510 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 8 RIDPEIIEVKHSVAVTSAYKKIGNHV---------------VLKGLNLNVPENKIYGLLG 52
+DP + E + A + ++ +V +++ +L + + L+G
Sbjct: 453 PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVG 512
Query: 53 PSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI---------GYMPQELALHGELSIRE 103
SG GK+T+ + G +G I +I + Q++ L ++R+
Sbjct: 513 GSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEG-TVRD 571
Query: 104 TFRYYGYMFDMT--DDQIETRSK------EILKLLELPPAKKIVGA--LSGGQQRRISFA 153
++D T D + K I A+ G LSGGQ++R+ A
Sbjct: 572 NLT----LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627
Query: 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+L+ NP +LILDE T LDP +II D L+ G T II H
Sbjct: 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 4e-10
Identities = 54/217 (24%), Positives = 101/217 (46%), Gaps = 27/217 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
K G LK +NL V +I+ LLG +G GK+TL+ + G + GTI ++ +
Sbjct: 13 KSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKL 72
Query: 86 ---------IGYMPQELALHGELSIRETFRYYGYM-------FDMTD-DQIETRSKEILK 128
IG + QEL++ EL++ E Y G ++ D ++ R+ +L
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDELTVLENL-YIGRHLTKKVCGVNIIDWREMRVRAAMMLL 131
Query: 129 LLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL-DPILSQI--IWDRL 184
+ L + V LS ++ + A +L+ + K++I+DEPT L + + + I ++L
Sbjct: 132 RVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191
Query: 185 KEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220
++ G I+ +H + E + +M+D +
Sbjct: 192 RK---EGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225
|
Length = 510 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 58/225 (25%), Positives = 99/225 (44%), Gaps = 39/225 (17%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
+H L+ +N + ++ G+ GP+G GK+TLL+ I + G I+ ++ +
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKL---- 382
Query: 91 QELALHGELSI-RETFRYYGYMF-------------DMTDDQIETRSKEILKL------- 129
Q + L++ +T ++F D T +IE + +L
Sbjct: 383 QLDSWRSRLAVVSQT----PFLFSDTVANNIALGRPDATQQEIE----HVARLASVHDDI 434
Query: 130 LELPPAKKI-VGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
L LP VG LSGGQ++RIS A +LL N ++LILD+ +D I L
Sbjct: 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494
Query: 185 KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
++ G+T+II+ H + A I +M+ R H + +
Sbjct: 495 RQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
Q+E R E+L L L P + +LSGG R+ + +L+ NP +L+LDEPT LD
Sbjct: 134 QLENRINEVLAQLGLDPDAAL-SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------S 84
L +NL V + I+ L+G +G GK+TLL C+ G D+G+I ++I +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 85 DIGYMPQELALHGELSIRETF---RYYGYMFDMTDDQIETRSKEILKLL--ELPPAKKIV 139
I + QEL L + S+ + RY + D++ +K I L ++ P K V
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-V 132
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQIIWDRLKEMALNGKTII 195
LS Q + I A + +N K++I+DEPT L L II +LKE G I+
Sbjct: 133 ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTII-RKLKE---RGCGIV 188
Query: 196 ITTHYIEEA-KGAHNIGLMRDDQYI 219
+H +EE + I ++RD Q+I
Sbjct: 189 YISHKMEEIFQLCDEITILRDGQWI 213
|
Length = 491 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-10
Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 35/177 (19%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKL----------SFRQISDIGYMPQELALHGEL 99
+LGPSG GK+TLLN I G T +G++ L S R +S + QE L L
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVS---MLFQENNLFSHL 86
Query: 100 SIRETFRYYGYMFD----MTDDQIETRSKEILK------LLE-LPPAKKIVGALSGGQQR 148
++ + G + + Q E I + LL LP G LSGGQ++
Sbjct: 87 TVAQNI---GLGLNPGLKLNAAQREKL-HAIARQMGIEDLLARLP------GQLSGGQRQ 136
Query: 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEEA 204
R++ A L+ +L+LDEP LDP L Q + + ++ + T+++ +H +E+A
Sbjct: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA 193
|
Length = 232 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 57/198 (28%), Positives = 96/198 (48%), Gaps = 26/198 (13%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG------RNTLDA-GTIKLSFRQ 82
+ +L L+ V + + ++GP+G GK+TLL+ I G N L G + S
Sbjct: 271 NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330
Query: 83 ISDI----GYMPQELALHGELSIRETFR---YYGYMFD------MTDDQIETRSKEILKL 129
I DI GY+ +LH + + + R G+ FD D+ + +++ L +
Sbjct: 331 IWDIKKHIGYVSS--SLHLDYRVSTSVRNVILSGF-FDSIGIYQAVSDRQQKLAQQWLDI 387
Query: 130 LELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
L + A +LS GQQR +L+ +P LLILDEP GLDP+ Q++ + +
Sbjct: 388 LGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447
Query: 188 ALNGKT-IIITTHYIEEA 204
G+T ++ +H+ E+A
Sbjct: 448 ISEGETQLLFVSHHAEDA 465
|
Length = 490 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-10
Identities = 58/211 (27%), Positives = 97/211 (45%), Gaps = 51/211 (24%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTI------------------KLSFRQISDIGYMP 90
G++G SG GKTTLLN + R DAG + + ++ G++
Sbjct: 36 GIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95
Query: 91 QELA--LHGELS----IRETF-----RYYGYMFDMTDDQIETRSKEILKLLELPPAK--K 137
Q L ++S I E R+YG I + + L+ +E+ A+
Sbjct: 96 QHPRDGLRMQVSAGGNIGERLMAVGARHYG--------DIRATAGDWLERVEIDAARIDD 147
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK----EMALNGKT 193
+ SGG Q+R+ A +L+ +P+L+ +DEPT GLD + + D L+ E+ L
Sbjct: 148 LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL---A 204
Query: 194 IIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
++I TH + A+ AH + +M+ GR+V
Sbjct: 205 VVIVTHDLAVARLLAHRLLVMKQ----GRVV 231
|
Length = 258 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-10
Identities = 41/136 (30%), Positives = 69/136 (50%), Gaps = 18/136 (13%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103
E+++ G+LGP+G GKTT + + G D G I++ +S Y PQ + E ++R+
Sbjct: 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS---YKPQYIKADYEGTVRD 80
Query: 104 TFRYYGYMFDMTDD-----QIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLL 157
+ +T D +T EI K L++ + V LSGG+ +R++ A L
Sbjct: 81 ------LLSSITKDFYTHPYFKT---EIAKPLQIEQILDREVPELSGGELQRVAIAACLS 131
Query: 158 HNPKLLILDEPTVGLD 173
+ + +LDEP+ LD
Sbjct: 132 KDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-10
Identities = 61/255 (23%), Positives = 115/255 (45%), Gaps = 31/255 (12%)
Query: 9 IDPEIIEVKHSVAVTSAYKKIGNHVV-LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67
I I+E ++ + + I H + ++ ++ +I G+ G G G+T L+ + G
Sbjct: 253 IGDVILEARN----LTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG 308
Query: 68 R-NTLDAGTIKLSFRQI----------SDIGYMPQELALHG-----------ELSIRETF 105
G + ++ + + + I +P++ HG LS+ ++F
Sbjct: 309 AYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF 368
Query: 106 RYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165
+ + + QI + + LK+ P I G LSGG Q++ A LL NP++LIL
Sbjct: 369 CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-GRLSGGNQQKAVLAKMLLTNPRVLIL 427
Query: 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224
DEPT G+D I+ + ++A G II+ + + E G + + ++ + + G V+
Sbjct: 428 DEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487
Query: 225 HDIVESLVEALEDAL 239
H + + V L AL
Sbjct: 488 HALTQEQV--LAAAL 500
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 47/234 (20%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQISDIG 87
+ G++L + + GL+G SG GK+TL G L G I+ + I G
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDID--G 352
Query: 88 YMPQEL-AL-----------HGELS--------IRETFRYYGYMFDMTDDQIETRSKEIL 127
+E+ L +G LS I E R + ++ + + R E L
Sbjct: 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP--KLSAAERDQRVIEAL 410
Query: 128 KLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQIIWDRL 184
+ + L PA + SGGQ++RI+ A +L+ P+L++LDEPT LD + +Q++ D L
Sbjct: 411 EEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL-DLL 469
Query: 185 KEMALNGK---TIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
+ L K + + +H + + H + +MRD G++V E++
Sbjct: 470 R--DLQQKHGLSYLFISHDLAVVRALCHRVIVMRD----GKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-10
Identities = 44/177 (24%), Positives = 83/177 (46%), Gaps = 15/177 (8%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L ++L E + GL+G +G GK+TL N I G + G + + ++ +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD----RNGEVSVIAISAG 95
Query: 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-----PPAKKIVGALSGGQQRR 149
L G+L+ E + +I+ + +I++ EL P KK S G + +
Sbjct: 96 LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKK----YSSGMRAK 151
Query: 150 ISFAVSLLHNPKLLILDEP-TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205
+ F++++ NP +L++DE +VG D +Q D++ E KTI +H + + +
Sbjct: 152 LGFSINITVNPDILVIDEALSVG-DQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVR 207
|
Length = 264 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 8e-10
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 29/186 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL------------SFR 81
VL+ ++L+V + L GPSG GK+TLL + D G I + R
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 82 QI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL-------KL 129
++ + IGY+ Q L + +S + + + ++ ++L +L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERL 145
Query: 130 LELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L PA SGG+Q+R++ A + + +L+LDEPT LD ++ + ++E
Sbjct: 146 WSLAPA-----TFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA 200
Query: 190 NGKTII 195
G ++
Sbjct: 201 RGAALV 206
|
Length = 235 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 9e-10
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
Query: 35 LKGLNLNVPENKIY-----GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
L +L V +IY G++GP+G GKTT + G D G + + I Y
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELK----ISYK 405
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQR 148
PQ + + ++ + R ++ EI+K L+L K V LSGG+ +
Sbjct: 406 PQYIKPDYDGTVEDLLRSITDDLG--SSYYKS---EIIKPLQLERLLDKNVKDLSGGELQ 460
Query: 149 RISFAVSLLHNPKLLILDEPTVGLD 173
R++ A L + L +LDEP+ LD
Sbjct: 461 RVAIAACLSRDADLYLLDEPSAHLD 485
|
Length = 590 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 61/203 (30%), Positives = 107/203 (52%), Gaps = 34/203 (16%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--- 78
+T+ Y + G VL+ L+ +V + GLLG +G GK+TLL+ ++ R G I++
Sbjct: 1223 LTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQIDGV 1280
Query: 79 SFRQIS------DIGYMPQELALHGELSIRETFR-----YYGYMFDMTDDQIETRSKEI- 126
S+ ++ G +PQ++ + TFR Y + +D++I ++E+
Sbjct: 1281 SWNSVTLQTWRKAFGVIPQKVFI-----FSGTFRKNLDPYEQW----SDEEIWKVAEEVG 1331
Query: 127 LK-LLELPPAK---KIVGA---LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179
LK ++E P K +V LS G ++ + A S+L K+L+LDEP+ LDP+ QI
Sbjct: 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQI 1391
Query: 180 IWDRLKEMALNGKTIIITTHYIE 202
I LK+ + + T+I++ H +E
Sbjct: 1392 IRKTLKQ-SFSNCTVILSEHRVE 1413
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 60/238 (25%), Positives = 104/238 (43%), Gaps = 54/238 (22%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IEV VT Y+ G ++L ++L + + ++GPSG GK+TLL ++G T ++
Sbjct: 452 IEVDR---VTFRYRPDGP-LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES 507
Query: 74 GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS-------KEI 126
G++ Y Q+LA L ++ R G + + + ++ + S
Sbjct: 508 GSVF----------YDGQDLA---GLDVQAVRRQLGVV--LQNGRLMSGSIFENIAGGAP 552
Query: 127 LKLLELPPAKKIVG---------------------ALSGGQQRRISFAVSLLHNPKLLIL 165
L L E A ++ G LSGGQ++R+ A +L+ P++L+
Sbjct: 553 LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLF 612
Query: 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
DE T LD I+ + L+ L I+I H + + A I ++ GR+V
Sbjct: 613 DEATSALDNRTQAIVSESLE--RLKVTRIVI-AHRLSTIRNADRIYVLDA----GRVV 663
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 26/189 (13%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-----SFRQISD---- 85
L ++ + +++ L+G +G GK+TLL + G DAG+I + F +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79
Query: 86 -IGYMPQELALHGELSIRETFRYYGYM---FDMTDD-QIETRSKEILKLL--ELPPAKKI 138
+ + QEL L E+++ E Y G + + + + ++E L+ L ++ P
Sbjct: 80 GVAIIYQELHLVPEMTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP- 137
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTI 194
+ LS GQ++ + A +L N +++ DEPT L L ++I L+ G+ I
Sbjct: 138 LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVI-RELRA---EGRVI 193
Query: 195 IITTHYIEE 203
+ +H +EE
Sbjct: 194 LYVSHRMEE 202
|
Length = 501 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 20/190 (10%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
T + ++ V+L+ ++++VP K+ +LG +G GK+TLL ++ + + G + + R
Sbjct: 663 KTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAER 721
Query: 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD----------QIETRSKEILKLLE 131
I+ Y+PQ+ + + T R FD D Q+E ++ LE
Sbjct: 722 SIA---YVPQQAWI-----MNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLE 773
Query: 132 LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
+K V LSGGQ+ R+S A ++ N + +LD+P LD + + + + AL G
Sbjct: 774 TEIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAG 832
Query: 192 KTIIITTHYI 201
KT ++ TH +
Sbjct: 833 KTRVLATHQV 842
|
Length = 1560 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 52/236 (22%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
EII V+H ++ Y LK ++ +V E + ++G +G GK+TL + G
Sbjct: 4 EIIRVEH---ISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP 59
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ------------- 118
+AGTI + +S E ++ + R G +F D+Q
Sbjct: 60 EAGTITVGGMVLS-------------EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106
Query: 119 ----------IETRSKEILKL------LELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
+ R + L+ L P + LSGGQ++R++ A L P +
Sbjct: 107 LENIGVPREEMVERVDQALRQVGMEDFLNREPHR-----LSGGQKQRVAIAGVLALQPDI 161
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEEAKGAHNIGLMRDDQ 217
+ILDE T LDP + + + ++++ T++ TH ++EA A + +M +
Sbjct: 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217
|
Length = 279 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 56.7 bits (136), Expect = 2e-09
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 117 DQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL---HNPKLLILDEPTVGLD 173
++ + L+ L K ++ +S G +R ++ ++LL LL++DEP GL
Sbjct: 165 KLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLH 224
Query: 174 PILSQIIWDRLKEMALNGKTIIITTH 199
P L + + + LKE++ G +I TTH
Sbjct: 225 PKLLRKLVELLKELSEKGAQLIFTTH 250
|
Length = 256 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 3e-09
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L+ +NL + + + G++G +G GK+TL + G G + +S D +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 95 LHGELSIRETFRYYGYMFD---------MTDDQIETRSKEILKLLELPPAK---KIVGAL 142
L G + ++ G + + IE R + L E+ K + L
Sbjct: 78 LVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTL 137
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202
SGGQ + ++ A L P+ LI DE T LDP + +R+K++ GKTI+ TH +E
Sbjct: 138 SGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE 197
Query: 203 EAKGAHNIGLM 213
E A I +M
Sbjct: 198 ELHDADRIIVM 208
|
Length = 274 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 26/64 (40%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQQ+R+ A ++ P +L++DEP LDP+ + +I + ++E+ N TII+ TH +
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN-FTIIVVTHSM 208
Query: 202 EEAK 205
++AK
Sbjct: 209 KQAK 212
|
Length = 251 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 49/201 (24%), Positives = 85/201 (42%), Gaps = 48/201 (23%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
LK ++ + E + +LG +G GK+T+ + G +G IK+ IS
Sbjct: 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISK-------- 75
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQ---------------------------IETRSKE- 125
+++E + G +F D+Q I+ +K+
Sbjct: 76 -----ENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV 130
Query: 126 -ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ L+ P LSGGQ++R++ A L NP+++I DE T LDP + I +
Sbjct: 131 GMEDYLDKEPQN-----LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 185 KEMALNG-KTIIITTHYIEEA 204
++ KT+I TH ++EA
Sbjct: 186 VDLRKTRKKTLISITHDMDEA 206
|
Length = 271 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 7e-09
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 46/198 (23%)
Query: 34 VLKGLNLNV-PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG----- 87
VLK ++ ++ P K+ G++G +G GK++LL + L +G+I + IS IG
Sbjct: 19 VLKNISFSIKPGEKV-GIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLR 77
Query: 88 ----YMPQE-LALHGELSIRET---FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
+PQ+ + G +IR F Y +D+ E+ + LE K+ V
Sbjct: 78 SRISIIPQDPVLFSG--TIRSNLDPFGEY------SDE-------ELWQALERVGLKEFV 122
Query: 140 GALSG---------------GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L G GQ++ + A +LL K+L+LDE T +DP +I +
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182
Query: 185 KEMALNGKTIIITTHYIE 202
+E A T++ H ++
Sbjct: 183 RE-AFKDCTVLTIAHRLD 199
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 8e-09
Identities = 53/179 (29%), Positives = 84/179 (46%), Gaps = 28/179 (15%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--------KLSFRQI---- 83
G+ L + E + G++G SGCGK+T I+G G + + +
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVR 97
Query: 84 SDIGYMPQE-LA-LH-----GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-- 134
SDI + Q+ LA L+ GE+ I E R Y ++ +++ R K ++ + L P
Sbjct: 98 SDIQMIFQDPLASLNPRMTIGEI-IAEPLRT--YHPKLSRQEVKDRVKAMMLKVGLLPNL 154
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII---WDRLKEMAL 189
+ SGGQ +RI A +L+ PKL+I DEP LD I +Q++ +EM L
Sbjct: 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGL 213
|
Length = 331 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 9e-09
Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 45/191 (23%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ--E 92
L ++L + + I ++G +GCGK+TL G Y+PQ E
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-------------------YIPQEGE 398
Query: 93 LALHGELSIRETFRYYGYMFD-------MTDDQIETRSKE---------ILKLLELPPAK 136
+ L G ++ Y +F + DD I E L+ LE+
Sbjct: 399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKV 458
Query: 137 KIVG-------ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR-LKEMA 188
KI ALS GQQ+R++ + L + +L+ DE DP + ++ L ++
Sbjct: 459 KIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK 518
Query: 189 LNGKTIIITTH 199
GKTIII +H
Sbjct: 519 RQGKTIIIISH 529
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 53/197 (26%), Positives = 90/197 (45%), Gaps = 28/197 (14%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88
+ + +LKGLNL++ + +I+ ++GP+G GK+TL I G + F+ S +
Sbjct: 17 VNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDL 76
Query: 89 MPQELALHGELSIRETFRY----------------YG----YMFDMTDDQIE--TRSKEI 126
P+E A L I F+Y Y + D +E E
Sbjct: 77 EPEERA---HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEK 133
Query: 127 LKLLELPPA---KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
LKL+ + P+ + + SGG+++R L + +L ILDE GLD +II +
Sbjct: 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEG 193
Query: 184 LKEMALNGKTIIITTHY 200
+ ++ + +II+ THY
Sbjct: 194 INKLMTSENSIILITHY 210
|
Length = 252 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-08
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----LSQIIWDRLKEMALNGKTIII 196
+LSGGQQ+R+ A + P++L+LDEP LDPI + ++I LK+ T++I
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI-TELKQ----DYTVVI 210
Query: 197 TTHYIEEA-KGAHNIGLMRDDQYIGRLVHHD 226
TH +++A + + M Y+G L+
Sbjct: 211 VTHNMQQAARCSDYTAFM----YLGELIEFG 237
|
Length = 260 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 30/198 (15%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---------IGYMPQELALHGELS 100
++GP+G GK+TL+N + +G I + I I + Q+ L S
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-S 424
Query: 101 IRETFRYYGYMFDMTDDQIETRSK--EILKLLELPPAK--KIVG----ALSGGQQRRISF 152
I + R G D TD+++ ++ + +E P +VG LSGG+++R++
Sbjct: 425 IEDNIRV-GRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAI 482
Query: 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL 212
A +LL +P +LILDE T LD + L E+ T II AH +
Sbjct: 483 ARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII----------AHRLST 532
Query: 213 MRDDQYIGRLVHHDIVES 230
+R+ I + +VES
Sbjct: 533 VRNADRILVFDNGRVVES 550
|
Length = 588 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
+L+GLNL V +++ ++GP+G GK+TL + GR + + F+ + P++
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75
Query: 94 ALHG--------------------ELSIRETFRYYGY----MFDMTDDQIETRSKEILKL 129
A G + ++ Y G FD D +E E + L
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQ-DLME----EKIAL 130
Query: 130 LELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
L++P + + SGG+++R + P+L ILDE GLD +I+ D +
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS 190
Query: 187 MALNGKTIIITTHY 200
+ ++ II THY
Sbjct: 191 LRDGKRSFIIVTHY 204
|
Length = 248 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 49/137 (35%), Positives = 68/137 (49%), Gaps = 27/137 (19%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTLDAGTI----KLSFRQISDIGYMPQELALHGELSIRETF 105
L+GP+GCGKTTLL ++G+ D+G I KL ++ Y Q A EL +T
Sbjct: 350 LIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKL------EVAYFDQHRA---ELDPEKTV 400
Query: 106 RYYGYMFDMTDDQIET----RSKEILKLLE---LPP--AKKIVGALSGGQQRRISFAVSL 156
M ++ + + E R + +L L+ P A V ALSGG++ R+ A
Sbjct: 401 -----MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLF 455
Query: 157 LHNPKLLILDEPTVGLD 173
L LLILDEPT LD
Sbjct: 456 LKPSNLLILDEPTNDLD 472
|
Length = 635 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 39/112 (34%), Positives = 60/112 (53%), Gaps = 18/112 (16%)
Query: 122 RSKEILKLLELP-PAKKI---VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PIL 176
R+ ++L + +P PA ++ LSGG +R+ A+++ PKLLI DEPT LD I
Sbjct: 130 RAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ 189
Query: 177 SQII-----WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
+QII + + MAL ++IT A+ AH I +M Y G++V
Sbjct: 190 AQIIELLLELQQKENMAL----VLITHDLALVAEAAHKIIVM----YAGQVV 233
|
Length = 326 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTHY 200
LSGGQ++R++ A L PK++ILDE T LDP + I +++ N T+I TH
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203
Query: 201 IEEAKGAHNIGLMRDDQYI 219
I+EA A + ++ D + +
Sbjct: 204 IDEANMADQVLVLDDGKLL 222
|
Length = 282 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT----LLNCIV--GRNTLDAGTIK--- 77
+ + ++VV+K ++ + + GL+G SG GK+T LL I G D +
Sbjct: 294 RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLN 353
Query: 78 ----LSFRQISDIGYMPQELALHGELS----IRETFRYYGYMFDMTDDQIETRSKEILKL 129
L R + + +L+ L+ I E R + ++ Q E + +++
Sbjct: 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH--QPTLSAAQREQQVIAVMEE 411
Query: 130 LELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ L P + SGGQ++RI+ A +L+ P L+ILDEPT LD
Sbjct: 412 VGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 22/161 (13%)
Query: 52 GPSGCGKTTLLNCIVGRNTLDAGTIKLS---------FRQISDIGYMPQELALHGELSIR 102
G +G GKTTLL + G +++G I++ R ++ +G++P L +LS
Sbjct: 44 GDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLP---GLKADLSTL 100
Query: 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKL 162
E + + Q+ + I+ L +V LS GQ++R++ A L L
Sbjct: 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGY--EDTLVRQLSAGQKKRLALARLWLSPAPL 158
Query: 163 LILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIITTH 199
+LDEP LD +++++I L+ G ++TTH
Sbjct: 159 WLLDEPYANLDLEGITLVNRMISAHLR----GGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90
V+++ L+ VP + GP+GCGK++L + + G + + + Y+P
Sbjct: 464 GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKG--KLFYVP 521
Query: 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV----------- 139
Q + ++R+ Y DM + K++ ++L+ I+
Sbjct: 522 QRPYM-TLGTLRDQIIYPDSSEDMKRRGL--SDKDLEQILDNVQLTHILEREGGWSAVQD 578
Query: 140 --GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG+++RI+ A H P+ ILDE T + + ++ +E G T+
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSV 635
Query: 198 TH 199
+H
Sbjct: 636 SH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 56/231 (24%), Positives = 93/231 (40%), Gaps = 45/231 (19%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD-IGYMPQ 91
++ G++L + ++ L+G SG GK+ L C L AG + + R + D P
Sbjct: 17 PLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKPVAPC 74
Query: 92 EL----------------------ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
L H RET G D D + L+
Sbjct: 75 ALRGRKIATIMQNPRSAFNPLHTMHTHA----RETCLALGKPAD--DATL----TAALEA 124
Query: 130 LELPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+ L A +++ +SGG +R+ A++LL +I DEPT LD + I D L+
Sbjct: 125 VGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLE 184
Query: 186 E-MALNGKTIIITTHYIE-EAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
+ +++ TH + A+ A ++ +M GR+V VE+L A
Sbjct: 185 SIVQKRALGMLLVTHDMGVVARLADDVAVMSH----GRIVEQGDVETLFNA 231
|
Length = 254 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++++++ V + KI N++ +L E K+ + GPSGCGK+TLL + +
Sbjct: 6 PLLQLQN-VGYLAGDAKILNNI---SFSLRAGEFKL--ITGPSGCGKSTLLKIVASLISP 59
Query: 72 DAGTIKLSFRQIS---------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
+GT+ IS + Y Q L G+ ++ + + + + D
Sbjct: 60 TSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPD--PAI 116
Query: 123 SKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ L+ LP K + LSGG+++RIS +L PK+L+LDE T LD
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 66/234 (28%), Positives = 103/234 (44%), Gaps = 55/234 (23%)
Query: 22 VTSAYKKIGNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
V++ Y G+ ++L + LN VP ++I GLLG +G GK+TL+ + G +G I L+
Sbjct: 318 VSAGY---GDRIILDSIKLNLVPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEIGLA- 372
Query: 81 RQISDIGYMPQ---------ELALH--GELSIRET---FRYYGYMFDMTDDQIETRSKEI 126
+ I +GY Q E L L+ +E R Y F D++
Sbjct: 373 KGIK-LGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKV------- 424
Query: 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
+ SGG++ R+ A+ + P LL+LDEPT LD + Q + + L +
Sbjct: 425 ---------TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID 475
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMR---DDQYIGRLVHHDIVESLVEALED 237
G ++++ H+ L+R DD Y LVH VE LED
Sbjct: 476 --FEGALVVVS----------HDRHLLRSTTDDLY---LVHDGKVEPFDGDLED 514
|
Length = 638 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 47/192 (24%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------D 85
+ ++ +V +I G G G G+T L+NC+ G + G I+L+ + IS
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 86 IGYMPQ---ELALHGELSIRETF---------RYYGYM--FDMTDDQIETRSKEILKLLE 131
+ Y+ + + SI + Y G M F D+Q ++ L L+
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 132 LPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191
+ + LSGG Q+++ + L P+++I DEPT G+D I+ ++++A +G
Sbjct: 400 CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDG 459
Query: 192 KTIIITTHYIEE 203
K I++ + + E
Sbjct: 460 KVILMVSSELPE 471
|
Length = 510 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-08
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL 62
G LK +NL++ +N++ +GPSGCGK+TLL
Sbjct: 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL 56
|
Length = 260 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQQ+R+ A ++ P++L+LDEPT LDPI + I + + E+ + TI+I TH +
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNM 227
Query: 202 EE-AKGAHNIGLMRDDQYIGRLVHHDIVESL 231
++ A+ + M Y+G+LV + ++L
Sbjct: 228 QQAARVSDYTAFM----YMGKLVEYGDTDTL 254
|
Length = 272 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM--ALNGKTIIITTH 199
LSGG+++R+ A++LL P+LLI DEPT LD + I L+E+ LN + IT +
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
K A + +M++ GR V + +L A
Sbjct: 217 LSIVRKLADRVAVMQN----GRCVEQNRAATLFSA 247
|
Length = 529 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 6e-08
Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 38/199 (19%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS- 79
V AY+ HV +NL + ++ L+G +G GK+TL + G +G I L
Sbjct: 327 NVRFAYQDNAFHV--GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Query: 80 ----------FRQI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
+R++ SD Q L G+ S + ++ ++E K
Sbjct: 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWL--------QRLELAHK 436
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS----QII 180
L K LS GQ++R++ ++LL +L+LDE DP Q++
Sbjct: 437 TSLNDGRFSNLK-----LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVL 491
Query: 181 WDRLKEMALNGKTIIITTH 199
LKE GKTI +H
Sbjct: 492 LPLLKEQ---GKTIFAISH 507
|
Length = 546 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 26/179 (14%)
Query: 35 LKGLNLNVPENKIY-----GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYM 89
L V E +IY G+LGP+G GKTT + + G D G+ + + Y
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSE-----EDLKVSYK 406
Query: 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRS--KEILKLLELPPA-KKIVGALSGGQ 146
PQ ++ + ++ + R + EI+K L L ++ V LSGG+
Sbjct: 407 PQYISPDYDGTVEDLLR------SAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGE 460
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIIITTHYI 201
+R++ A +L L +LDEP+ LD I++++I R E N KT ++ H I
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI-RRFIEN--NEKTALVVDHDI 516
|
Length = 591 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 8e-08
Identities = 53/209 (25%), Positives = 108/209 (51%), Gaps = 16/209 (7%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT---LLNCIV----GRNTLDAGTI-KL 78
+K G + +K +L + E +I+ ++G SG GK+T LLN ++ G+ +D I K+
Sbjct: 36 EKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKI 95
Query: 79 SFRQISD-----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
S ++ + I + Q AL +++ + + + + ++ ++ + L+ + L
Sbjct: 96 SDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE 155
Query: 134 P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL-KEMALNG 191
A LSGG ++R+ A +L NP +L++DE LDP++ + D L K A +
Sbjct: 156 NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYI 219
+TI+ +H ++EA + I +M++ + +
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVV 244
|
Length = 400 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 25/153 (16%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG------ 97
+ +I G+ G G G+T L+ + G +G + L ++ PQ+ +G
Sbjct: 277 KGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS--PQDGLANGIVYISE 334
Query: 98 ---------ELSIRET--------FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG 140
+S++E F G D+Q L ++ P ++ +G
Sbjct: 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG 394
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
LSGG Q++++ A L+ PK+LILDEPT G+D
Sbjct: 395 LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 58/197 (29%), Positives = 98/197 (49%), Gaps = 20/197 (10%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD--------- 85
LK ++ N+P+ + ++G +G GK+T+ ++G + +G I + + I+D
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84
Query: 86 IGYMPQELALHGELSIRETFRYYGYMFDMTD-----DQIETRSKEILKLLE-LPPAKKIV 139
IG + Q SI + Y F + + D++ R E LK ++ L A
Sbjct: 85 IGIVFQNPDNQFVGSIVK----YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEP 140
Query: 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITT 198
ALSGGQ++R++ A L NP ++ILDE T LDP Q + D ++++ TII T
Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISIT 200
Query: 199 HYIEEAKGAHNIGLMRD 215
H + EA A ++ +M
Sbjct: 201 HDLSEAMEADHVIVMNK 217
|
Length = 269 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L +NL +P + ++G +G GKT+L++ ++G + A T + R + Y+PQ ++
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSSVVIR--GSVAYVPQ-VS 688
Query: 95 LHGELSIRETFRY--------YGYMFDMTDDQIETRSKEILKLLELPPAKKI--VGA--- 141
++RE + Y D+T Q + L+L P + + +G
Sbjct: 689 WIFNATVRENILFGSDFESERYWRAIDVTALQHD---------LDLLPGRDLTEIGERGV 739
Query: 142 -LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+SGGQ++R+S A ++ N + I D+P LD ++ ++D + L GKT ++ T+
Sbjct: 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798
|
Length = 1495 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-07
Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 26/207 (12%)
Query: 6 IKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
IK + E ++ S V +++ VL+ LNL + + ++G SG GKTTLL I
Sbjct: 373 IKGLPNEFQDILESFGVR---QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMI 429
Query: 66 VG--------RNTLDAGTIKLSFRQISDIGYMPQELALH-GELSIRETFRYYGYMFDMTD 116
+G + D+G +++ +S + +P E GE++I E R T
Sbjct: 430 LGAQKGRGEEKYRPDSGKVEVPKNTVSAL--IPGEYEPEFGEVTILEHLR------SKTG 481
Query: 117 DQIETRSKEILKLLELPPAKKIVGA---LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
D + EIL L A LS GQ+ R A L P +L++DE LD
Sbjct: 482 DL--NAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD 539
Query: 174 PILSQIIWDRLKEMALN-GKTIIITTH 199
+ + + ++ E+A G T+I+ TH
Sbjct: 540 ELTAVRVARKISELAREAGITLIVVTH 566
|
Length = 593 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 55/206 (26%), Positives = 106/206 (51%), Gaps = 33/206 (16%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I++ + V+ AY+ +++VL+ +NL+VP L+G +G GK+TL + ++G L
Sbjct: 341 IDIDN---VSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 74 GTIKLSFRQISDIGY--MPQELAL--HGELSIRETF-------RYYGYMFDMTDDQIETR 122
G I+L R +S + + + Q +A+ + + +TF R D++++Q+ +
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR------DISEEQV-WQ 448
Query: 123 SKEILKLLELPPA-----KKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ E ++L EL + +G LS GQ++ ++ A L+ P++LILDE T +D
Sbjct: 449 ALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508
Query: 174 PILSQIIWDRLKEMALNGKTIIITTH 199
Q I L + + T+++ H
Sbjct: 509 SGTEQAIQQALAAVREH-TTLVVIAH 533
|
Length = 592 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 40/198 (20%), Positives = 62/198 (31%), Gaps = 65/198 (32%)
Query: 52 GPSGCGKTTLLNCIV------GRNTLDAGT--------------IKLSFRQISDIGYMPQ 91
G +G GKTT++ + G +KL+F + Y
Sbjct: 29 GQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKY--- 85
Query: 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQR--- 148
R + ++ I E L G SGG++
Sbjct: 86 -------TITRS--------LAILENVIFCHQGESNWPLLDMR-----GRCSGGEKVLAS 125
Query: 149 ---RISFAVSLLHNPKLLILDEPTVGLDP-----ILSQIIWDRLKEMALNGKTIIIT--- 197
R++ A + N +L LDEPT LD L++II +R + N + I+IT
Sbjct: 126 LIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ--KNFQLIVITHDE 183
Query: 198 ------THYIEEAKGAHN 209
H K
Sbjct: 184 ELVDAADHIYRVEKDGRQ 201
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DA----GTIKLSFRQIS 84
G+ L +++ +P+N++ +GPSGCGK+TLL C N L D G I+L + I
Sbjct: 36 GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95
Query: 85 D 85
D
Sbjct: 96 D 96
|
Length = 272 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 43/178 (24%)
Query: 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104
++ ++GP G GKTTL + RE
Sbjct: 2 GEVILIVGPPGSGKTTLARAL-----------------------------------AREL 26
Query: 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164
G + + + I + L L+ + K + SG + R++ A++ P +LI
Sbjct: 27 GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKK---ASGSGELRLRLALALARKLKPDVLI 83
Query: 165 LDEPTVGLDPILSQIIWD-----RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
LDE T LD ++ L + +I T E+ G + D +
Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRR 141
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHY 200
LSGG+++R+ A L P L + DEPT LDP ++++ + L+E G ++++T+H+
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 201 IE 202
E
Sbjct: 229 PE 230
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 48/195 (24%)
Query: 12 EIIEVKHSVA--VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-- 67
I+EV++ A + + K + V + ++ +I G+ G G G+T L+ C+ G
Sbjct: 258 VILEVRNLTAWDPVNPHIKRVDDV-----SFSLRRGEILGIAGLVGAGRTELVQCLFGAY 312
Query: 68 --RNTLDAGTIKLSFRQIS----------DIGYMPQELALHG---ELSIRETF------R 106
R G I + + + I +P++ G + + + R
Sbjct: 313 PGRWE---GEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR 369
Query: 107 YYGYMFDMTDDQIETRS--KEILKL------LELPPAKKIVGALSGGQQRRISFAVSLLH 158
+ G DD E ++ + I +L EL + LSGG Q++ A LL
Sbjct: 370 FTG--GSRIDDAAELKTILESIQRLKVKTASPELA-----IARLSGGNQQKAVLAKCLLL 422
Query: 159 NPKLLILDEPTVGLD 173
NPK+LILDEPT G+D
Sbjct: 423 NPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-07
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 142 LSGGQQRRISFAVSL---LHNPK-LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
LSGG++ + A+ L P+ L ILDE GLDP Q + + + E + G +I+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137
Query: 198 THY 200
TH
Sbjct: 138 THL 140
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-07
Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 54/209 (25%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG---RNTLDAGTIKLSFR----- 81
G+ + LN ++ + G++G SG GK+ ++G N G+ + R
Sbjct: 27 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNL 86
Query: 82 -----------QISDI---------GYMP------QELALHGELSIRETFRYYGYMFDMT 115
QIS I YM + L LH +S E F
Sbjct: 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFE--------- 137
Query: 116 DDQIETRSKEILKLLELPPAKKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
S +L +++P A+K + SGG ++R+ A++LL PKLLI DEPT
Sbjct: 138 ------ESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 191
Query: 172 LDPILSQIIWDRLKEMALNGKT-IIITTH 199
LD + I L E+ T II+ TH
Sbjct: 192 LDVTVQAQIMTLLNELKREFNTAIIMITH 220
|
Length = 330 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 48/217 (22%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
I+EV++ ++ ++ ++ ++ + +I G+ G G +T ++ + G
Sbjct: 250 ILEVRNLTSL--------RQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 301
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFR---------------------YYGYM 111
AGTI L ++I++ + E HG + E R Y +
Sbjct: 302 AGTITLHGKKINN--HNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359
Query: 112 FDMTDDQIETRSKEILKLLEL--PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + ++++ ++ ++ + + P + +G+LSGG Q+++ LL P++L+LDEPT
Sbjct: 360 GLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206
G+D I+ + E+A K III + + E G
Sbjct: 420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLG 456
|
Length = 491 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-06
Identities = 49/173 (28%), Positives = 70/173 (40%), Gaps = 31/173 (17%)
Query: 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA--------GTIKLSFRQI 83
+L+ L+L + ++ LLG +G GK+TLL + G T G + L+ +
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73
Query: 84 SDI---------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEIL-KLLELP 133
+ I +PQ S RE Y + R EI + L L
Sbjct: 74 AAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA 133
Query: 134 PAKKIVG----ALSGGQQRRISFAVSL--LH-------NPKLLILDEPTVGLD 173
A +VG LSGG+ R+ FA L L P+ L+LDEPT LD
Sbjct: 134 GATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186
|
Length = 272 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-06
Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 20 VAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V VT+ Y G+ + L +N+ +P ++ ++G GCGK++LL I+G G +
Sbjct: 1 VQVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60
Query: 79 SFRQISDIGYMPQELALHGEL------------SIRETFRYYGYMFDMTDDQIETRSKEI 126
S + S+ + + ++ E + G F+ + R K +
Sbjct: 61 SNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITF-GSPFN------KQRYKAV 113
Query: 127 LKLLELPPAKKI--------VGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
L P + +G LSGGQ++RI A +L N ++ LD+P LD
Sbjct: 114 TDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173
Query: 175 ILSQIIWDR--LKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215
LS + LK + + +T+++ TH ++ A I M+D
Sbjct: 174 HLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKD 216
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----ILSQIIWDRLKEMALNGKTIII 196
+LSGGQ++RI+ A +LL PK+L+LDE T LD ++ + I D +K+ A KTII
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD-IKDKA--DKTIIT 1414
Query: 197 TTHYIEEAKGAHNIGLMRDDQYIGRLVH 224
H I K + I + + G V
Sbjct: 1415 IAHRIASIKRSDKIVVFNNPDRTGSFVQ 1442
|
Length = 1466 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 47/233 (20%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IIEVK+ +T YK+ L ++ +V + + ++G +G GK+T + I G +
Sbjct: 4 IIEVKN---LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE 60
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-------------- 118
+G I + ++ E ++ + G +F D+Q
Sbjct: 61 SGQIIIDGDLLT-------------EENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL 107
Query: 119 ---------IETRSKEILKLLELPPAKKIVGA-LSGGQQRRISFAVSLLHNPKLLILDEP 168
++ R E L+L+ + K+ A LSGGQ++R++ A ++ PK++ILDE
Sbjct: 108 ENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167
Query: 169 TVGLDPI----LSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217
T LDP L + I + T+I TH ++E + + +M++ Q
Sbjct: 168 TSMLDPEGRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQ 217
|
Length = 279 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI-IITTHY 200
LSGGQ++RIS A +++ NPK+LILDE T LD ++ + + N I II H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 201 IEEAKGAHNIGLMRDDQYIGRL-VHHDIVESLVEALEDALRHGN 243
+ + A+ I ++ + + + V + + E+ ++
Sbjct: 640 LSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNK 683
|
Length = 1466 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 24/175 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY----- 88
VLK ++ V + G++G +G GK+TL+ + + G I++ IS I
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82
Query: 89 ----MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSG 144
+PQ+ L T R FD D +EI L + LS
Sbjct: 83 SLTIIPQDPTL-----FSGTIRSNLDPFDEYSD------EEIYGALRVSEGGL---NLSQ 128
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
GQ++ + A +LL P++L+LDE T +D +I ++E TI+ H
Sbjct: 129 GQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFTNSTILTIAH 182
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 4e-06
Identities = 53/198 (26%), Positives = 75/198 (37%), Gaps = 50/198 (25%)
Query: 48 YGLLGPSGCGKTTLL-------------NC--------IVGRNT---------------- 70
YGL+G +G GKTT L NC +VG +T
Sbjct: 206 YGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265
Query: 71 ------LDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
L A +L F + G + + + + Y + + E R+
Sbjct: 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAA 325
Query: 125 EILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
IL L P K SGG + RI+ A +L P LL+LDEPT LD L ++W
Sbjct: 326 SILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD--LHAVLW- 382
Query: 183 RLKEMALN-GKTIIITTH 199
L+ L KT I+ +H
Sbjct: 383 -LETYLLKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 8e-06
Identities = 55/200 (27%), Positives = 89/200 (44%), Gaps = 43/200 (21%)
Query: 50 LLGPSGCGKTTLLNCI-------VGRNTLDAGTI----KLSFRQISDIGYMPQELALHGE 98
++GP+G GKTTL+N + VG+ +D I + S R+ I + Q+ L
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRK--SIATVFQDAGLFNR 423
Query: 99 LSIRETFRYYGYMFDMTDDQI----ETRSKEILKLLELPPAKKIVGA----LSGGQQRRI 150
SIRE R TD+++ + + L +VG LSGG+++R+
Sbjct: 424 -SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480
Query: 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
+ A ++L N +L+LDE T LD + + + + N T II AH +
Sbjct: 481 AIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFII----------AHRL 530
Query: 211 GLMRD-------DQYIGRLV 223
+R+ DQ GRL+
Sbjct: 531 STVRNADLVLFLDQ--GRLI 548
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 33/167 (19%)
Query: 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL------ALH 96
P K+ GL+G +GCGK+TLL + + D G+ +F + ++ QE AL
Sbjct: 26 PGQKV-GLVGKNGCGKSTLLALLKNEISADGGSY--TFPGNWQLAWVNQETPALPQPALE 82
Query: 97 GELSIRETFRYYGYMFDMTDDQ--------------------IETRSKEILKLLEL--PP 134
+ +R +++ I +R+ +L L
Sbjct: 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142
Query: 135 AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
++ V SGG + R++ A +L+ LL+LDEPT LD L +IW
Sbjct: 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVIW 187
|
Length = 638 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 139 VGALSGGQQRRISFA--------VSLLHNPKLLILDEPTVGLDP-ILSQIIWDRLKEMAL 189
+ LSGG++ S A + +LL LDEP LD L ++ + L+E+
Sbjct: 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLA-EILEELLS 871
Query: 190 NGKTIIITTH 199
+G+ III +H
Sbjct: 872 DGRQIIIISH 881
|
Length = 908 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 34/157 (21%)
Query: 50 LLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQIS------------DIGYMPQE 92
L+G SG GK+T GR L G I + ++I DI ++ Q+
Sbjct: 355 LVGESGSGKST-----TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 93 --LALHGEL----SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSG 144
+L SI E R +G + R +L+ + L P A + SG
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGLL---PGKAAAARVAWLLERVGLLPEHAWRYPHEFSG 466
Query: 145 GQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII 180
GQ++RI A +L NPK++I DE LD I QII
Sbjct: 467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQII 503
|
Length = 623 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY---- 88
+VL+ +N+ + + G++G +G GK++L + N G I + I+ IG
Sbjct: 1300 LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359
Query: 89 -----MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-- 141
+PQ+ L S+R + D +E+ LEL K V A
Sbjct: 1360 FKITIIPQDPVLFSG-SLRMNLDPFSQYSD----------EEVWWALELAHLKTFVSALP 1408
Query: 142 -------------LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
LS GQ++ + A +LL K+L+LDE T +D
Sbjct: 1409 DKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 58/257 (22%), Positives = 116/257 (45%), Gaps = 34/257 (13%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQISDIGYMPQEL 93
L +NL+VP + ++G +G GKT+L++ ++G ++ + + Y+PQ +
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT----VAYVPQ-V 687
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKI--VGA----LSGGQQ 147
+ ++R+ +G FD + + L+L P + +G +SGGQ+
Sbjct: 688 SWIFNATVRDNI-LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQK 746
Query: 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITT---HYIEEA 204
+R+S A ++ N + I D+P LD + + ++D+ + L GKT ++ T H+
Sbjct: 747 QRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHF---- 802
Query: 205 KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNVINKVDLVDGRGSIDEVLSRQ 264
L + D+ I LVH +++ E+ +G + K L++ G ++E +
Sbjct: 803 -------LSQVDRII--LVHEGMIKE-EGTYEELSNNGPLFQK--LMENAGKMEEYVEEN 850
Query: 265 CTVSVD--VDRPAINEG 279
D +P N
Sbjct: 851 GEEEDDQTSSKPVANGN 867
|
Length = 1622 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 5e-05
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 133 PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
P ++++ LSGG Q++ L + K+++LDEPT G+D I++ + E+A G
Sbjct: 388 PSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447
Query: 193 TIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232
++ + + E G A I +MR+ + G L E
Sbjct: 448 AVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488
|
Length = 501 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 18/110 (16%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHY 200
L+ G+ +++ A++L + P+LLI DEPT ++P I+ L + N TI++ +H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHD 218
Query: 201 IEE-AKGAHNIGLMRDDQYIGRLV------------HHDIVESLVEALED 237
++ ++ A I ++ Y G+ V HH ++L+ A+ D
Sbjct: 219 LQMISQWADKINVL----YCGQTVESAPSEELVTMPHHPYTQALIRAIPD 264
|
Length = 330 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 6e-05
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 123 SKEILKLLELPPAKKIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS- 177
+K +L + +P A+ I+ LSGG ++R+ A++L P +LI DEPT LD +
Sbjct: 146 AKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQA 205
Query: 178 ---QIIWDRLKEMALNGKTIIITTH 199
Q+I KEM++ +I TH
Sbjct: 206 QILQLIKVLQKEMSMG---VIFITH 227
|
Length = 623 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-05
Identities = 61/256 (23%), Positives = 114/256 (44%), Gaps = 52/256 (20%)
Query: 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVG------RNTLD------AGTIKLSFRQ--- 82
+++ + E +I GL+G SG GK+ + I G R T D ++LS R+
Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRK 85
Query: 83 -----ISDIGYMPQELALHGELSIRETFR------YYGYMFDMTDDQIETRSKEILKLLE 131
+S I PQ E R+ + Y G + + + R+ E+L +
Sbjct: 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWR-KRRAIELLHRVG 144
Query: 132 LPPAKKIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
+ K + + L+ G+ +++ A++L + P+LLI DEPT ++P I+ L +
Sbjct: 145 IKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204
Query: 188 ALN-GKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLV------------HHDIVESLVE 233
N TI++ +H ++ ++ A I ++ Y G+ V HH ++L+
Sbjct: 205 NQNNNTTILLISHDLQMLSQWADKINVL----YCGQTVETAPSKELVTTPHHPYTQALIR 260
Query: 234 ALED---ALRHGNVIN 246
A+ D A+ H + +N
Sbjct: 261 AIPDFGSAMPHKSRLN 276
|
Length = 330 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
SGGQ++RI+ A +L+ +P +++ DEP LD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC 64
G+ +L +NL++ + ++ +GPSGCGK+T L C
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRC 50
|
Length = 251 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 42/191 (21%)
Query: 39 NLNVPE-NKIYGLLGPSGCGKTTLLNCIVGR---------NTLDAGTIKLSFRQISDIGY 88
L P K+ G+LGP+G GK+T L + G + + FR +++
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG-TELQN 151
Query: 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK-------------LLELPPA 135
++L GEL +Y D+ ++ + E+LK L L
Sbjct: 152 YFKKL-YEGELRAVHKPQY----VDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENV 206
Query: 136 -KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK------EMA 188
+ V LSGG+ +R++ A +LL + + DEP+ LD I RL E+A
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD------IRQRLNAARVIRELA 260
Query: 189 LNGKTIIITTH 199
+GK +I+ H
Sbjct: 261 EDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-DIGY 88
G ++ K LN + + ++GP+G GK+T+L I G +GT+ FR +
Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV---FRSAKVRMAV 576
Query: 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQ 146
Q +LS YM E + + L + A + + LSGGQ
Sbjct: 577 FSQHHVDGLDLSSNPLL----YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQ 632
Query: 147 QRRISFAVSLLHNPKLLILDEPTVGLD 173
+ R++FA P +L+LDEP+ LD
Sbjct: 633 KSRVAFAKITFKKPHILLLDEPSNHLD 659
|
Length = 718 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 3e-04
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 13/189 (6%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI---- 86
L L++ + I + G +GCGK++LL I G +G I I++I
Sbjct: 12 EQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 87 -GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI--LKLLELPPAKKIVGALS 143
Y+ L L E+++ E +++ ++ + ET I KL +L K +LS
Sbjct: 72 CTYIGHNLGLKLEMTVFENLKFWSEIY----NSAETLYAAIHYFKLHDLLDEK--CYSLS 125
Query: 144 GGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE 203
G Q+ ++ A + L +LDE L ++ + + A +G +++++H
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185
Query: 204 AKGAHNIGL 212
K A + L
Sbjct: 186 IKSAQILQL 194
|
Length = 195 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHY 200
LSGGQ++R++ A + P+++ILDE T LDP Q I + E+ + T++ TH
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
Query: 201 IEEAKGAHNIGLMRDDQYI 219
++EA + I +M+ + I
Sbjct: 201 LDEAASSDRILVMKAGEII 219
|
Length = 277 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VL GL+ V ++ G++G +G GK+++LN + L+ G I + ++ G
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTD--- 1307
Query: 94 ALHGELSI--RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVG----------- 140
L LSI + + G + D E ++ + LE K ++
Sbjct: 1308 -LRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVS 1366
Query: 141 ----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196
S GQ++ +S A +LL K+L+LDE T +D +I ++E T+++
Sbjct: 1367 EGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE-EFKSCTMLV 1425
Query: 197 TTH 199
H
Sbjct: 1426 IAH 1428
|
Length = 1495 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 0.002
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76
+ K L+G SG GK+TLLN ++ L G I
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLPELVLATGEI 116
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.002
Identities = 38/161 (23%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR--QISDIGYMPQE 92
+K ++ + E + ++G +G GK+TL + G +G I ++ D + +
Sbjct: 29 VKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKR 88
Query: 93 L---------ALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP--AKKIVG 140
+ +L+ L I + + D+ +Q + E L+++ L P A
Sbjct: 89 IRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH 148
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII 180
L+ GQ++R++ A +L+ PK++I DE LD + SQ+I
Sbjct: 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLI 189
|
Length = 267 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 88 YMPQELALHGE----LSIRETFRYYGYMFDMTDDQIETRSKEILKL-LELPPAKKIVGAL 142
++PQ L + + I E Y F + + I + + L L+ P + + +L
Sbjct: 751 FLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSL 810
Query: 143 SGGQQRRISFAVSLLH---NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
SGG+ +R+ A LL P L +LDEPT GL + + L+ + G T++I H
Sbjct: 811 SGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEH 870
|
Length = 1809 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 139 VGALSGGQQRRISFAVSLLHNPKLL----ILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
LSGG+ +RI A + L +LDEP++GL P + + + LK + G T+
Sbjct: 135 APTLSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTV 192
Query: 195 IITTH 199
++ H
Sbjct: 193 LVVEH 197
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 37.5 bits (87), Expect = 0.004
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 21/164 (12%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--DIGYMPQE 92
+K L+ + E + ++G +G GK+TL + G +G + + + D Y Q
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQR 88
Query: 93 LAL-----HGELSIRETFRYYGYMFDM-----TDDQIETRSKEI---LKLLELPP--AKK 137
+ + L+ R+ + D TD + E R K+I L+ + L P A
Sbjct: 89 IRMIFQDPSTSLNPRQRI---SQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD-PILSQII 180
L+ GQ++R+ A +L+ PK++I DE LD + SQ+I
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLI 189
|
Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0059|consensus | 885 | 100.0 | ||
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0061|consensus | 613 | 100.0 | ||
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| KOG0054|consensus | 1381 | 100.0 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 100.0 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 100.0 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.98 | |
| KOG0065|consensus | 1391 | 99.97 | ||
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.97 | |
| KOG0927|consensus | 614 | 99.97 | ||
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.97 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.97 | |
| KOG0927|consensus | 614 | 99.96 | ||
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.96 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.96 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.96 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.96 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.96 | |
| KOG0062|consensus | 582 | 99.96 | ||
| KOG0066|consensus | 807 | 99.95 | ||
| KOG0062|consensus | 582 | 99.94 | ||
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.94 | |
| KOG2355|consensus | 291 | 99.94 | ||
| KOG0060|consensus | 659 | 99.93 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.92 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.91 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.91 | |
| KOG0065|consensus | 1391 | 99.91 | ||
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.9 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.9 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.89 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.88 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.88 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.88 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.88 | |
| KOG0064|consensus | 728 | 99.88 | ||
| KOG0066|consensus | 807 | 99.87 | ||
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.87 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.86 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.85 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.81 | |
| KOG0063|consensus | 592 | 99.81 | ||
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.76 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.75 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.74 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.72 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.71 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.69 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.64 | |
| KOG0063|consensus | 592 | 99.63 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.62 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.6 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.59 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.58 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.57 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.56 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.55 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.55 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.54 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.52 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.52 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.51 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.51 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.5 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.5 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.5 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.45 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.45 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.43 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.4 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.38 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.36 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.36 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.34 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.3 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.3 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.28 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.27 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.27 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.19 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.18 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.13 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.12 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.08 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 99.06 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.05 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 99.03 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.03 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 99.01 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.97 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.96 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.94 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.88 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.87 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.86 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.86 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.84 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.83 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.8 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.79 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.79 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.74 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.71 | |
| COG4637 | 373 | Predicted ATPase [General function prediction only | 98.68 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.67 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.63 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.6 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.58 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.56 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.54 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.54 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.53 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.53 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.53 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.52 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 98.52 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 98.5 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 98.5 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.49 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.49 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.49 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.48 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.47 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.46 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.46 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=448.43 Aligned_cols=212 Identities=30% Similarity=0.505 Sum_probs=200.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
||+++|++|+||+..+|++||++|++||+++|+||||||||||||||++|.+|++|+|+++|.++ +++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 68899999999999999999999999999999999999999999999999999999999999754 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
|||+++|||.+||.||+.++. ...+.+++++++++.++|+++||.+ ++.+|.+|||||||||+|||||+.+|+++|+|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 999999999999999998753 3457888999999999999999976 79999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+|||+...++++.+++++++|+|.++|||+|.+++. ||||++|++|+++.++++++++..
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999999999987 999999999999999999887654
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=432.73 Aligned_cols=217 Identities=31% Similarity=0.505 Sum_probs=204.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
|++++|++|.|+++.+++|+||+|++||+++++|||||||||+||+|++++.|++|+|+++|+++ ++||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999987 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
-|...|||++||.||+.+.-.+.++++++.+++++++|+.+||+. .+++|++|||||||||.+||||+.+|+++|+|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 999999999999999998878888888999999999999999963 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEAL 235 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 235 (291)
|||++|||.++.++.+.+.+++++ |+||||||||++++.. +|||++|++|+++..++|+++.......+
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~F 231 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHH
Confidence 999999999999999999999854 9999999999999966 99999999999999999999876554443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=438.24 Aligned_cols=213 Identities=27% Similarity=0.453 Sum_probs=202.1
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
||++++++|.|.. ..+|+||||+|++|||+||+|.||||||||+|||++|.+|++|+|.++|+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 6889999999976 5799999999999999999999999999999999999999999999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
++||++||+++|+...||++|++|+..+.+.++++.++++.++++.+||++ .+++|.+|||||||||+|||||+.+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P 160 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP 160 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence 469999999999999999999999999999999999999999999999976 78999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
++||+|||||+|||.+.+.++++|+++.+ .|.||+++||.|+.++. |||+++|++|++++.|+..+++...
T Consensus 161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 99999999999999999999999999974 59999999999999987 9999999999999999988876543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=422.25 Aligned_cols=203 Identities=32% Similarity=0.468 Sum_probs=189.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQEL 93 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~ 93 (291)
.+++++++++.|++..+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .++|||||++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 467899999999999999999999999999999999999999999999999999999999999876 5799999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.|+|++||.||+.++....+.+.++.++++.++++.+||.. .+++|++|||||||||+|||||+.+|++|+|||||++|
T Consensus 82 ~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgAL 161 (248)
T COG1116 82 ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161 (248)
T ss_pred cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchh
Confidence 99999999999999877766667777789999999999977 79999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEE
Q psy6612 173 DPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIG 220 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~ 220 (291)
|..++..+.+.+.++. +.++||++||||++++-. +|||++|.+ |++..
T Consensus 162 DalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~ 213 (248)
T COG1116 162 DALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGE 213 (248)
T ss_pred hHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceee
Confidence 9999999999999986 568999999999999976 999999999 45543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-60 Score=425.42 Aligned_cols=222 Identities=27% Similarity=0.455 Sum_probs=201.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+|+++|+++.|+++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++ +.+|||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 68899999999999999999999999999999999999999999999999999999999999987 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 90 PQELALHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||.+...+.+||+|.+.++..- +....++.++.+.++++.+|+.+ +++++.+|||||||||.|||||+++|++|+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 9999888899999999875322 22234455668899999999976 789999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHhcC
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHG 242 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 242 (291)
|||||++||..++.++++++++++ ++|+|||+++||++.+.+ ||++++|++|+++++|.++++..+ +.+.+.|+..
T Consensus 162 LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~--e~l~~Vygv~ 239 (258)
T COG1120 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE--ENLREVYGVD 239 (258)
T ss_pred eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH--HHHHHHhCCc
Confidence 999999999999999999999998 569999999999999976 999999999999999999988765 6677777654
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-60 Score=413.26 Aligned_cols=224 Identities=29% Similarity=0.451 Sum_probs=205.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
...+++++++++||++.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++ +
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
++|++||...||..+||+||+.|+.+-+ ..+++..++.+..-++.+||.. .+++|++|||||++|++||||++.+|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPe 165 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPE 165 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCC
Confidence 6999999999999999999999976554 5777888888888899999964 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
++++||||+||||.+...|-++|+++++. |.|+++||||++.+.. |||++++.+|+|++.|+++++.+.-...+.+.+
T Consensus 166 ll~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~ 245 (263)
T COG1127 166 LLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFF 245 (263)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHh
Confidence 99999999999999999999999999865 9999999999999976 999999999999999999998765445555554
Q ss_pred h
Q psy6612 240 R 240 (291)
Q Consensus 240 ~ 240 (291)
.
T Consensus 246 ~ 246 (263)
T COG1127 246 N 246 (263)
T ss_pred c
Confidence 3
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=438.06 Aligned_cols=228 Identities=32% Similarity=0.475 Sum_probs=206.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v 89 (291)
...+++++++|+||+..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++ ++||+|
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 4578899999999999999999999999999999999999999999999999999999999999987 679999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||+..|||.|||+||+.|+.+..+ .+++++++++.++++.++++. .++++++|||||||||+|||||+.+|++|||||
T Consensus 83 FQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE 162 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE 162 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC
Confidence 999999999999999999987444 344668889999999999976 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHH-HHHHHhcCcc
Q psy6612 168 PTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA-LEDALRHGNV 244 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~-~~~~~~~~~~ 244 (291)
|+|+||..-+.++...++++.+ .|.|.|+||||.+++.. +|||++|++|+|...|+++++....... +.+.++..++
T Consensus 163 PlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~ 242 (352)
T COG3842 163 PLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGESNI 242 (352)
T ss_pred cccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhCccee
Confidence 9999999999999999999974 59999999999999976 9999999999999999999987765433 3333443333
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-59 Score=433.57 Aligned_cols=215 Identities=31% Similarity=0.458 Sum_probs=204.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEc
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMP 90 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~ 90 (291)
.+|+++|++|.||+..+|+++||+|+.||+++|+||||||||||||+|+||++|++|+|.++|+++ ++||+||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 368899999999987799999999999999999999999999999999999999999999999987 6799999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|+..|||.|||+||+.|+.+..+.++++.++++.++++.+++++ ++++|.+|||||||||+|||||+++|+++|||||+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPl 161 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCch
Confidence 99999999999999999999988889999999999999999987 79999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 232 (291)
|+||+..+..+...|+++.++ |.|+|.+|||..++.. +||+++|++|++...|++.++.+...
T Consensus 162 SnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 999999999999999999854 8999999999999977 99999999999999999999877544
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-60 Score=403.63 Aligned_cols=212 Identities=27% Similarity=0.467 Sum_probs=203.0
Q ss_pred eEEEEeEEEEECCEe-eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~-~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
||++.+++|+|+... +++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+. ++||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 688999999999876 99999999999999999999999999999999999999999999999876 579999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+.+..+|..||++||+.|++.++++++.+.+.+++++.+.+++.. .++++++||.||||||+|||||+++|++++||||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP 160 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEP 160 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCC
Confidence 988999999999999999999999999999999999999999966 7999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||..+++.+.+.+++++++|++||++||+|++++. ||+++++++|+++..|+.+.+...
T Consensus 161 ~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 161 TSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999889999999999999986 999999999999999999887654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-58 Score=406.51 Aligned_cols=200 Identities=31% Similarity=0.476 Sum_probs=183.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
|+++++++|.|+. ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|.++|+++
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4678999999964 4799999999999999999999999999999999999999999999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C-CCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A-KKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
++||||||+.+|.|++||.||+.++..+.+.+....++++.++++.+|+.+ . +++|.+|||||||||+|||||+.+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~ 160 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN 160 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence 359999999999999999999998776666555456778889999999975 4 488999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
|+++++||||.+||..+.+.+++++++++++ |+||||||||...+..|||++.|++|++
T Consensus 161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKI 220 (226)
T ss_pred CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999854 8999999999999999999999999984
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=423.71 Aligned_cols=213 Identities=38% Similarity=0.681 Sum_probs=198.0
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEE
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
.++++++++|+|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.++|.+. +++||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3567899999999 69999999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++.+++.+|++||+.|++.+++.+....+++++++++.++|.. .++++++||+|||||++||+||+++|++|||||
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDE 162 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDE 162 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999999999999999998888765556678999999999976 578899999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCC-cEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNG-KTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+||||.++..++++|++++++| +||+++||.++++.. ||+|++|++|+++..++++++...
T Consensus 163 Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 163 PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 999999999999999999999876 899999999999987 999999999999999988775443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-58 Score=408.94 Aligned_cols=220 Identities=30% Similarity=0.480 Sum_probs=192.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQ 91 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q 91 (291)
.+++++|+++.|++.+||+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|++. ..||||||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 468899999999976899999999999999999999999999999999999999999999999865 36999999
Q ss_pred CCC--CCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 92 ELA--LHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 92 ~~~--l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
... .-..+||+|.+.++... ++...+..+++++++|+.+|+.+ .++++++|||||+|||.|||||+++|++|+
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lll 162 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLL 162 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEE
Confidence 653 33347999999875321 12223444788999999999976 799999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHh
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
|||||+|+|+.++..|+++|++++++|+||++||||++.+.. ||+++.| |+++++.|+++++.+. +.+...|.
T Consensus 163 LDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~--~~l~~~~g 236 (254)
T COG1121 163 LDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE--ENLEKAFG 236 (254)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH--HHHHHHhC
Confidence 999999999999999999999999779999999999999966 9999999 4678899999988765 44555554
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=422.22 Aligned_cols=214 Identities=33% Similarity=0.642 Sum_probs=198.7
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEE
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIG 87 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig 87 (291)
...++++++++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++ +.+|
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999886 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
|+||++.+++.+|++||+.+++..++.+..+..+++.++++.+++.. .++++++||||||||++|||||+++|++||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD 163 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD 163 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999999999999998776666665666678889999999976 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+|||+.++..++++|++++++|+|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 164 EPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 164 EPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999998779999999999999976 99999999999999999887754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-58 Score=400.61 Aligned_cols=220 Identities=29% Similarity=0.447 Sum_probs=199.6
Q ss_pred ceEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 18 HSVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 18 ~~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
.||+++|+++.| +++++|+||||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++ +
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 478999999999 899999999999999999999999999999999999999999999999999776 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhc--------cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYG--------YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~--------~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
++||+||+++|.+.+||.+|+..+. .++++..++.+..+.++|+.+|+.+ +.++.++|||||||||+||||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 6999999999999999999997542 2345556677888899999999965 678999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~ 233 (291)
|+++|+++|.|||+++|||.+.+++++.|++++ ++|.|||++.|+++.+.. |||++-|++|+++.+|++.++.++
T Consensus 162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~--- 238 (258)
T COG3638 162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDE--- 238 (258)
T ss_pred HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHH---
Confidence 999999999999999999999999999999998 569999999999999966 999999999999999999986654
Q ss_pred HHHHHHh
Q psy6612 234 ALEDALR 240 (291)
Q Consensus 234 ~~~~~~~ 240 (291)
.+.+.|.
T Consensus 239 ~~~~iYg 245 (258)
T COG3638 239 ALDEIYG 245 (258)
T ss_pred HHHHHhc
Confidence 4455554
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=419.01 Aligned_cols=213 Identities=35% Similarity=0.645 Sum_probs=196.7
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
..+|+++|++|+|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+||
T Consensus 39 ~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~ 118 (340)
T PRK13536 39 TVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGV 118 (340)
T ss_pred ceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEE
Confidence 3479999999999999999999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++.+++.+|++||+.++...++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+++|++|||||
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDE 198 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDE 198 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999987666655554555667888999999976 689999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+||||.++..++++|++++++|+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 199 Pt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 199 PTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999998779999999999999976 99999999999999999888754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=419.87 Aligned_cols=211 Identities=27% Similarity=0.449 Sum_probs=194.2
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++|+|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5889999999952 5799999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
++|||+||++.+++.+|++||+.++....+.+..+.++++.++++.+|+.+ .++++.+|||||||||+|||||+.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 259999999999999999999998765555556667778899999999976 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||++||+.++..++++|++++++ |.|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999864 8999999999999976 99999999999999999887754
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=421.78 Aligned_cols=212 Identities=29% Similarity=0.448 Sum_probs=196.9
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEc
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~ 90 (291)
+|++++++++| +++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ +.|||+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 68899999999 788999999999999999999999999999999999999999999999999876 4699999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+|+.+||+||+.|.....+.+..+..+++.++++.++++. .++++.+|||||||||+|||||+.+|++|||||||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999998765555555666778899999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++||+.++..+++.|+++.++ |.|+|++|||++++.. ||++++|++|+++..|+++++.+.
T Consensus 163 s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 163 SNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999754 8999999999999966 999999999999999999888654
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-57 Score=409.13 Aligned_cols=212 Identities=29% Similarity=0.480 Sum_probs=197.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE---ec-------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR---QI-------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~-------~~ig~ 88 (291)
+|++++++|.|+...+++|||++|+.||.+||+||||||||||||+|+|++.|++|+|.++|+ +. ++|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 578899999999999999999999999999999999999999999999999999999999999 43 57999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccC--CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFD--MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|||+..+|+.|||.+||+|+..... .++..++.++.++|+.++|+. .+++|.+|||||||||+|||||+.+|++|||
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred EEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEee
Confidence 9999999999999999999875542 345677889999999999987 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+++||..-++++...|+++.++ |.|.++||||.+++.. ||||++|++|+|...|+++++...
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~ 228 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDH 228 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence 9999999999999999999999865 9999999999999976 999999999999999999988654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=419.15 Aligned_cols=214 Identities=29% Similarity=0.479 Sum_probs=199.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v 89 (291)
+.+|+++++++.|+++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++||+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 3479999999999999999999999999999999999999999999999999999999999999876 579999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+|+.+||+||+.|....++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP 163 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEP 163 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999999999999999998766556666667788999999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|++||+..+.++.+.|+++.++ |.|+|++|||++++.. ||++++|++|+++..++++++...
T Consensus 164 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 164 LSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999754 8999999999999966 999999999999999999887654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=393.67 Aligned_cols=211 Identities=26% Similarity=0.391 Sum_probs=192.8
Q ss_pred ceEEEEeEEEEECCEe----eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKIGNHV----VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~----~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
.+|+++|+++.|+.+. +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|++.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4789999999999877 99999999999999999999999999999999999999999999999754
Q ss_pred CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.+.+|||+| ++.|.+||++.+.-+....+.++. ++++.++++.+|+.. ++++|.+|||||+||++|||||+.+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence 4699999998 688999999999877666555443 345899999999975 6899999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|++||||||||+||+..+.+++++|.++++ .+.|+||+|||+..+.. ||||++|++|++++.++..++...
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999985 48999999999999988 999999999999999998887654
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-56 Score=417.88 Aligned_cols=212 Identities=34% Similarity=0.494 Sum_probs=197.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.+||+||
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 68899999999999999999999999999999999999999999999999999999999999876 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+....+.+..+.+++++++++.++|+. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999998765555556667788999999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||+..+..+++.|+++.++ |.|+|++|||++++.. ||++++|++|+++..|+++++.+.
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999754 8999999999999966 999999999999999999888654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-57 Score=381.80 Aligned_cols=205 Identities=27% Similarity=0.428 Sum_probs=194.3
Q ss_pred eEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||++++++|.|++ .+||+||||+|++||++-|+||||||||||+|+|++..+|+.|+|+++|.++ ++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 6789999999965 5599999999999999999999999999999999999999999999999986 56
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||+||||..|.+..||+||++|+....+.++++.++++.++|+.+||.+ .+..|.+|||||||||+||||++++|++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl 160 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL 160 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence 9999999999999999999999999999999999999999999999976 788999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
.||||.+|||....++++++.++...|.||+|+|||.+.+.. -.|++.+++|+++.+..
T Consensus 161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999889999999999999987 57899999999987543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=386.64 Aligned_cols=213 Identities=30% Similarity=0.445 Sum_probs=196.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-----cEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-----GTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-----G~I~~~g~~~--------- 83 (291)
..++++++++.||.+.||+|||++|++++++|++||||||||||||+++.+..... |+|.++|+++
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 45788999999999999999999999999999999999999999999999987664 9999999987
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral 156 (291)
+++|+|||.|+.|| +|++||+.|+.++++...++..+.+++.|+...|++ +++.+..||||||||++|||||
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 46999999999999 899999999999888777788888999999888852 4678889999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 232 (291)
+.+|+|||||||||+|||.+..++.++|.+|+ +.-||++|||+|..+.+ +|+.+++..|++++.|+.+.++....
T Consensus 165 Av~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred hcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 99999999999999999999999999999998 45899999999999988 89999999999999999988876544
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=416.29 Aligned_cols=212 Identities=27% Similarity=0.438 Sum_probs=197.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc--cEEEECCEec-------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA--GTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~--G~I~~~g~~~-------~~ig~v 89 (291)
.|++++++++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|+++ +.+||+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4789999999999999999999999999999999999999999999999999999 9999999875 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|+. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999999999999999998765555566667778999999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhC--CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALN--GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~--g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+|||+..+.++++.|++++++ |.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999865 7999999999999966 999999999999999999988664
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=406.41 Aligned_cols=212 Identities=34% Similarity=0.633 Sum_probs=193.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
.+|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.+||+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 468899999999999999999999999999999999999999999999999999999999999875 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+++.+|++||+.+....++.+..+..+++.++++.+++.. .++++++||||||||++|||||+++|++||||||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 162 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEP 162 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999986554444444455567788999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||+.++..+++.|++++++|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 t~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 163 TTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999998779999999999999976 99999999999999999887654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=392.93 Aligned_cols=212 Identities=30% Similarity=0.542 Sum_probs=204.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQEL 93 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~ 93 (291)
+|++++++|+||.+.|++|+||++++|+++|++|||||||||++|+|.|++.|++|+|.|+|.++ .+|||+|.+.
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 68899999999999999999999999999999999999999999999999999999999999887 4699999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.||+.+||.|.+.|++.+.+++..+.++++..+|+++++.. ..+++.+||.|+||++.+..|++|+|+++|||||||||
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999999999999999999999999999999999965 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||.+.+.+.+.+.+++++|+|||++||.|+.++. ||++++|++|+.|.+|+.+++...
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 9999999999999999999999999999999987 999999999999999998877653
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=416.34 Aligned_cols=216 Identities=31% Similarity=0.445 Sum_probs=198.9
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEE
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGY 88 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~ 88 (291)
..++|+++|+++.|+++++|+++||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +.+||
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35578999999999999999999999999999999999999999999999999999999999999976 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++.+|+.+||+||+.|+....+.+..+.++++.++++.++++. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDE 170 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 9999999999999999998765555555666678899999999976 689999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
||++||+..+..+.+.|+++.++ |.|+|++|||++++.. ||++++|++|+++..++++++....
T Consensus 171 P~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999854 8999999999999866 9999999999999999998876643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-55 Score=390.15 Aligned_cols=209 Identities=31% Similarity=0.485 Sum_probs=188.0
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------CeEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ig 87 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 4689999999988999999999999999999999999999999999999999999999999764 2489
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+++.+|+.||+.+....+ +...++..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll 160 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY 160 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999998754322 2344455667888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 999999999999999999999986 48999999999999976 9999999999999988876543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=411.42 Aligned_cols=212 Identities=26% Similarity=0.444 Sum_probs=195.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+||+||
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999876 46999999
Q ss_pred CCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 92 ELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
++.+|+.+|++||+.|....+ ..+.++..+++.++++.++++. .++++.+|||||||||+|||||+.+|++||||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999865432 2344556678899999999976 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+|||+.++..+++.|++++++ |+|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999865 8999999999999976 999999999999999999888654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=391.94 Aligned_cols=212 Identities=27% Similarity=0.404 Sum_probs=197.2
Q ss_pred ceEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 18 HSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
.++++++++++|++. .+|+++||++++||+++|+|+||||||||+++++|+++|++|+|.++|.++ +++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 467899999999765 999999999999999999999999999999999999999999999999863 469
Q ss_pred EEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 87 GYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 87 g~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
|||||+| .++. -||.+.++|+....+.+.+++++++.++++.+++.+ .++++.+|||||||||+||.+|+++|++|
T Consensus 82 G~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 82 GLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred EEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 9999998 4454 499999999988888888889999999999999976 79999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||||||+.+++.+++++++++++ |+|||++|||++++.. ||++++|++|+++.+|++.++.+.
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999876 6999999999999976 999999999999999998777654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-55 Score=385.56 Aligned_cols=207 Identities=30% Similarity=0.570 Sum_probs=188.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 4689999999999999999999999999999999999999999999999999999999999765 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+++|+.+....++....+..+++.++++.++++. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999987654444444445667889999999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..+++++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999865 8999999999999976 99999999999998877554
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=385.21 Aligned_cols=200 Identities=26% Similarity=0.412 Sum_probs=180.9
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 5789999999964 5799999999999999999999999999999999999999999999999865 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
.++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 58999999999999999999987654444444445667889999999975 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||||||+|||+.++..+.+.|++++++|+|||++|||++++.. ||++++|++|++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999997778999999999999976 999999999864
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-55 Score=383.84 Aligned_cols=203 Identities=35% Similarity=0.518 Sum_probs=183.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
+++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 4689999999988999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|++||+.+....++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~ 160 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA 160 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999987543333334445567888999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999975 48999999999999866 9999999999987643
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=412.38 Aligned_cols=212 Identities=27% Similarity=0.442 Sum_probs=195.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+||
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 58899999999999999999999999999999999999999999999999999999999999876 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+|++||+.|.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999998755444555556678899999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.++..+++.|+++.++ |.|+|++|||++++.. ||++++|++|+++..++++++...
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999754 8999999999999976 999999999999999999887653
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=412.07 Aligned_cols=214 Identities=29% Similarity=0.428 Sum_probs=197.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v 89 (291)
..+|++++++++|++..+|+++||++++||+++|+||||||||||||+|+|+.+|++|+|+++|+++ +.+||+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 5579999999999988999999999999999999999999999999999999999999999999876 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+|+.+||.||+.|.....+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP 176 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999999999999998765445556667778899999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|++||+..+..+.+.|+++.+ .|.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 177 ~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 177 MGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 999999999999999999864 48999999999999866 999999999999999999887654
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-54 Score=400.98 Aligned_cols=210 Identities=30% Similarity=0.568 Sum_probs=194.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
++++++++++|+++.+|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+||+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999876 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++++|+.||+.+....++.+.++..+++.++++.+++.. .++++++||||||||++|||||+++|++|||||||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999998766666555555667889999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||+.+++.+++.|+++++ ++|||++||+++++.. |||+++|++|+++..|+.+++..
T Consensus 162 ~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 162 TGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred ccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999974 7999999999999976 99999999999999999887644
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=402.79 Aligned_cols=203 Identities=35% Similarity=0.652 Sum_probs=186.7
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcCCCCCCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQELALHGE 98 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ 98 (291)
|+|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+||+||++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 468888999999999999999999999999999999999999999999999999875 359999999999999
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~ 177 (291)
+|++||+.+....++.+..+..+++.++++.+++.. .++++++|||||||||+|||||+++|++|||||||+|||+.++
T Consensus 81 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 160 (302)
T TIGR01188 81 LTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTR 160 (302)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 999999988766665555555677889999999976 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 178 QIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 178 ~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
..++++|++++++|+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 ~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 161 RAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999998779999999999999976 99999999999999999877644
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=407.39 Aligned_cols=211 Identities=26% Similarity=0.451 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 578999999997 47899999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.+||+||++.+++.+|+.||+.+....++.+..+..+++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 259999999999999999999988655555555556678889999999976 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..++++|++++++ |+|||++||+++++.. ||++++|++|+++..|+++++..
T Consensus 161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999754 8999999999999976 99999999999999999887754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=386.87 Aligned_cols=210 Identities=30% Similarity=0.459 Sum_probs=188.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|++++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 47899999999989999999999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCC----ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 92 ELALHGELSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
++.+++.+|+.||+.+.....+. ...+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999989999999875433221 22334456788999999975 68899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+|||+.+++.+.++|++++++ |+|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999864 8999999999999866 9999999999999998877654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=384.17 Aligned_cols=210 Identities=31% Similarity=0.506 Sum_probs=189.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 4689999999989999999999999999999999999999999999999999999999999864 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+++.+|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999999999999987543333333444567788999999975 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||+.+++.+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999998778999999999999866 99999999999999888776543
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-55 Score=386.10 Aligned_cols=220 Identities=29% Similarity=0.423 Sum_probs=199.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.++++++++|+||+..|++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++ ..|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 467899999999999999999999999999999999999999999999999999999999999987 2488
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcccc-------C-----CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMF-------D-----MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~-------~-----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
.-||.+.+|++|||.||+......+ + ...++..+++.++++++||.+ ++++.++||+|||+|+.|||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIAr 162 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIAR 162 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHH
Confidence 9999999999999999998653211 1 134567788999999999976 79999999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~ 232 (291)
||+.+|++|+||||.+||.+.....+.++|+++++ .|.||++|.|||+.+.. ||||++|+.|+++++|+|+++.++
T Consensus 163 ALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~~d-- 240 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNN-- 240 (250)
T ss_pred HHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHhcC--
Confidence 99999999999999999999999999999999986 46999999999999976 999999999999999999998876
Q ss_pred HHHHHHH
Q psy6612 233 EALEDAL 239 (291)
Q Consensus 233 ~~~~~~~ 239 (291)
..+.+.|
T Consensus 241 p~VieAY 247 (250)
T COG0411 241 PRVIEAY 247 (250)
T ss_pred HHhHHHh
Confidence 3444444
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=381.07 Aligned_cols=205 Identities=28% Similarity=0.452 Sum_probs=184.9
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcC
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q 91 (291)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999987 7899999999999999999999999999999999999999999999999876 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+....++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 9999998999999987644444444445567888999999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEe--CCEEEEEech
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMR--DDQYIGRLVH 224 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~--~G~i~~~~~~ 224 (291)
|||+.++..++++|+++.+ .|+|||++||+++++.. ||++++|+ +|+++++++.
T Consensus 161 ~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 161 ALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999864 58999999999999865 99999999 7999887653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-56 Score=380.11 Aligned_cols=220 Identities=28% Similarity=0.439 Sum_probs=199.7
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig 87 (291)
.+|.++++.|+|+.++++++|||++++||++||+|||||||||.+.++.|+.+|++|+|.++|.++. .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 3578899999999999999999999999999999999999999999999999999999999999872 499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChH--HHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDD--QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
|+||+++.|..+||.||+......+....+ +.+.+++++++.|.+.+ .+++..+||||||+|+.|||||+.+|++++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence 999999999999999999877666543333 44556889999999987 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
|||||+|+||.+...+.++++.|++.|..|+++.|+..+... |||.+++.+|++.++|+++++.++ +.....|
T Consensus 163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n--~~Vr~~Y 236 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN--EDVRRVY 236 (243)
T ss_pred ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC--hhhhhhc
Confidence 999999999999999999999999899999999999999755 999999999999999999998875 3444444
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=383.13 Aligned_cols=207 Identities=26% Similarity=0.388 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
++|++++++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 36889999999964 5799999999999999999999999999999999999999999999999875
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|+||++.+++.+|++||+.+.....+...++.++++.++++.+|+.. .++++.+||||||||++|||||+.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 249999999999999999999987543333344455567889999999976 6789999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||++++..+|++++|++|++++.++.
T Consensus 164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELSL 229 (233)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEecc
Confidence 999999999999999999999999999975 58999999999999988789999999999987764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=381.03 Aligned_cols=203 Identities=25% Similarity=0.513 Sum_probs=185.3
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeE
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~i 86 (291)
||+++|++++|+++ ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 57899999999876 899999999999999999999999999999999999999999999999875 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+|+||++.+++.+|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999987654444444555677889999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred cCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 99999999999999999999998778999999999999866 999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=410.97 Aligned_cols=221 Identities=26% Similarity=0.401 Sum_probs=197.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 368899999999999999999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 89 MPQELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|++.+++.+|++||+.+....+ .......+++++++++.+++.. .++++.+||||||||++|||||+++|++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iL 161 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVL 161 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999999999998753211 1112344567889999999976 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHh
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++..|+++++... ..+.+.|.
T Consensus 162 LLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~--~~l~~~~~ 237 (402)
T PRK09536 162 LLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA--DTLRAAFD 237 (402)
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc--HHHHHHhC
Confidence 9999999999999999999999998778999999999999966 999999999999999999887654 34555554
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=384.10 Aligned_cols=208 Identities=29% Similarity=0.450 Sum_probs=186.7
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4679999999988999999999999999999999999999999999999999999999999865 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCC----------ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDM----------TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~----------~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
||++.+++.+|++||+.+....... ......+++.++++.+++.. .++++.+|||||||||+|||||+.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999999999999875432211 12344567888999999976 688999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|++|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 999999999999999999999999999998778999999999999966 999999999999988887654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=378.04 Aligned_cols=203 Identities=32% Similarity=0.487 Sum_probs=183.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|+++|++++|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4689999999988999999999999999999999999999999999999999999999999875 259999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|++||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~ 160 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN 160 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999988999999987644444444555667888999999975 6899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|++++.|
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999985 48999999999999976 9999999999998653
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-54 Score=383.06 Aligned_cols=209 Identities=30% Similarity=0.494 Sum_probs=188.4
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++++|+++ ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 57899999999876 899999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+....++.........+.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 249999999999999999999987543334444444567888999999975 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++||||||+|||+.++..+++.|++++++ |+|||++||+++++.. ||++++|++|+++..++.+++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (233)
T cd03258 161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228 (233)
T ss_pred EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999765 8999999999999976 999999999999998876654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=382.05 Aligned_cols=211 Identities=27% Similarity=0.472 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+|
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 57899999999989999999999999999999999999999999999999999999999999875 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|+.||+.+....++.......+.+.++++.+|+.. .++++.+||||||||++|||||+.+|+++||||||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999888999999987654444444445567888999999975 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||+.++..+.+.|+++++ +|.|||++||+++++..||++++|++|+++..++++++..
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 161 VGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHH
Confidence 99999999999999999974 5899999999999997799999999999999988776654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=380.20 Aligned_cols=199 Identities=30% Similarity=0.468 Sum_probs=179.7
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------ 83 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------ 83 (291)
|++++++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999986 7899999999999999999999999999999999999999999999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+.....+......++++.++++.++++. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 249999999999999999999987654444333344567888999999976 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
+|||||||+|||+.++..+.++|+++++ .|+|||++||+++++..||++++|++|++
T Consensus 161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999986 58999999999999877999999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-54 Score=375.98 Aligned_cols=202 Identities=32% Similarity=0.583 Sum_probs=184.0
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~~ 94 (291)
|+++|+++.|+++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4689999999988999999999999999999999999999999999999999999999999875 46999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+++.+|+.||+.+....++....+..+.+.++++.++++. .++++.+||||||||++|||||+.+|+++||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 9999999999987654444444455667888999999975 678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 999999999999998778999999999999966 999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=393.35 Aligned_cols=214 Identities=28% Similarity=0.417 Sum_probs=200.2
Q ss_pred eEEEEeEEEEECCE------------------------eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q psy6612 19 SVAVTSAYKKIGNH------------------------VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74 (291)
Q Consensus 19 ~l~~~~l~~~~~~~------------------------~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G 74 (291)
.++++|++|-||.+ ..++|+||+++.|||+.|+|-||||||||+|+++++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 46788888888632 368999999999999999999999999999999999999999
Q ss_pred EEEECCEec-------------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcC
Q psy6612 75 TIKLSFRQI-------------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVG 140 (291)
Q Consensus 75 ~I~~~g~~~-------------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~ 140 (291)
+|+++|+++ +++++|||++.|+|+.||.||+.|+....+.++.+.++++.++++.+||+. .+++|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999987 469999999999999999999999999999999999999999999999986 689999
Q ss_pred cCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
+|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.+|.+ -++||+|+|||++++.+ .|||.+|++|+|
T Consensus 164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i 243 (386)
T COG4175 164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI 243 (386)
T ss_pred cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE
Confidence 9999999999999999999999999999999999999999999999974 48999999999999976 999999999999
Q ss_pred EEEechhHHHHHHH
Q psy6612 219 IGRLVHHDIVESLV 232 (291)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (291)
+..|+++++.....
T Consensus 244 vQ~Gtp~eIl~~PA 257 (386)
T COG4175 244 VQVGTPEEILLNPA 257 (386)
T ss_pred EEeCCHHHHHcCcc
Confidence 99999999876544
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-54 Score=405.70 Aligned_cols=204 Identities=26% Similarity=0.418 Sum_probs=188.3
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEEEcCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGYMPQEL 93 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~v~q~~ 93 (291)
|+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+||+||++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 468889999999999999999999999999999999999999999999999999875 2599999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+|+.+||+||+.+.....+.+.++..+++.++++.++|+. .++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL 160 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL 160 (363)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999999999998766556666666778999999999976 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 173 DPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||.++..+.+.|.++++ .|+|||++|||++++.. ||++++|++|+++..|+++++...
T Consensus 161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999975 48999999999999866 999999999999999998887543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=377.49 Aligned_cols=206 Identities=35% Similarity=0.591 Sum_probs=186.5
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
|++++++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 468999999987 7899999999999999999999999999999999999999999999999875 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+|++.+++.+|+.||+.+....++.+.....+++.++++.+++.. .++++.+||+|||||++|||||+.+|++||||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 160 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEP 160 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999989999999987655444444445567888999999965 6788999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..+++++
T Consensus 161 ~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 218 (220)
T cd03263 161 TSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 999999999999999999975 5899999999999976 99999999999998887654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=387.54 Aligned_cols=213 Identities=26% Similarity=0.398 Sum_probs=190.6
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
+++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 4578999999999999999999999999999999999999999999999999999999999999764 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.++|+||++.+++.+|+.||+.+..... .......+.++.++++.+++.. .++++++||||||||++|||||+.+|++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4999999999999999999998753222 2233344556778899999976 6889999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 165 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (269)
T PRK11831 165 IMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQA 233 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999754 8999999999999976 99999999999999998877654
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-54 Score=376.46 Aligned_cols=199 Identities=30% Similarity=0.454 Sum_probs=180.1
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 57899999999 567899999999999999999999999999999999999999999999999865 25
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|++|++.+++.+|+.||+.+....++......++++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 8999999999999999999987644333334445567889999999975 688999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+
T Consensus 161 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999997778999999999999976 99999999884
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=389.27 Aligned_cols=211 Identities=27% Similarity=0.389 Sum_probs=188.3
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
.++|+++++++.|+ +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++ +.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 2 DNIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred CceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 45789999999995 57899999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||+||++. .+..+|++||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999973 3445799999987543334444555667889999999965 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++.+
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999998678999999999999965 999999999999999987643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-53 Score=380.21 Aligned_cols=211 Identities=27% Similarity=0.452 Sum_probs=189.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-----------eEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-----------DIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-----------~ig 87 (291)
||++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++. .++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 578999999999889999999999999999999999999999999999999999999999998752 489
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|++|++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999986432 223334445567888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.++|++++++|+|||++||+++++.. ||++++|++|+++..++.+++.+
T Consensus 161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 99999999999999999999998778999999999999966 99999999999999988776543
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=376.67 Aligned_cols=201 Identities=26% Similarity=0.392 Sum_probs=179.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
+|++++++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 3678999999964 5799999999999999999999999999999999999999999999999864
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+.++|+||++.+++.+|++||+.+..........+..+++.++++.++++. .++++.+||||||||++|||||+.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 249999999999999999999987543333333344567788999999975 68899999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEE
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYI 219 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~ 219 (291)
++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++++..||++++|++|+++
T Consensus 161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999975 489999999999998779999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=377.42 Aligned_cols=206 Identities=31% Similarity=0.518 Sum_probs=183.7
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|++++|+++++++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 4689999999988999999999999999999999999999999999999999999999999764 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||++.+++.+|++||+.+....+. ....+.++.++++.+ ++.. .++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 158 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE 158 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 999999999999999987644332 223345566778887 4654 688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
||+|||+.++..+++.|++++++|+|||++||+++++.. ||++++|++|+++..++.+++
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 999999999999999999998778999999999999866 999999999999988876654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=376.82 Aligned_cols=202 Identities=28% Similarity=0.374 Sum_probs=182.9
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 57899999999 678899999999999999999999999999999999999999999999999865 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 8999999998888999999987644444444445567788999999965 688999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
|||||+|||+.++..+++.|+++++++.|||++||+++++.. ||++++|++|++++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999997678999999999999976 99999999999864
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=390.61 Aligned_cols=214 Identities=21% Similarity=0.306 Sum_probs=192.3
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
..+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (279)
T PRK13650 2 SNIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRH 81 (279)
T ss_pred CceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHh
Confidence 457899999999963 4699999999999999999999999999999999999999999999999876 2
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.+||+||++. +++.+|+.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5899999984 6677899999987654445555566678899999999976 6899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||||+|||+.++..+++.|++++++ |+|||++||+++++..||++++|++|+++..++++++...
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999864 8999999999999966999999999999999998876543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=406.82 Aligned_cols=213 Identities=23% Similarity=0.393 Sum_probs=191.5
Q ss_pred cceEEEEeEEEEECCEe------------------------eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHV------------------------VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~------------------------~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
..+|+++|++|.||.++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|+
T Consensus 2 ~~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~ 81 (400)
T PRK10070 2 AIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT 81 (400)
T ss_pred CcEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence 34677788888777654 899999999999999999999999999999999999999
Q ss_pred ccEEEECCEec-------------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCC
Q psy6612 73 AGTIKLSFRQI-------------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138 (291)
Q Consensus 73 ~G~I~~~g~~~-------------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~ 138 (291)
+|+|+++|+++ +.+||+||++.+|+++|+.||+.+.....+.+..+..+++.++++.+++.. .+++
T Consensus 82 sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~ 161 (400)
T PRK10070 82 RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSY 161 (400)
T ss_pred CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcC
Confidence 99999999875 259999999999999999999998655445555555677889999999976 6899
Q ss_pred cCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|.++++ .|+|||++|||++++.. ||++++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999974 58999999999999966 9999999999
Q ss_pred EEEEEechhHHHH
Q psy6612 217 QYIGRLVHHDIVE 229 (291)
Q Consensus 217 ~i~~~~~~~~~~~ 229 (291)
+++..++++++..
T Consensus 242 ~i~~~g~~~~l~~ 254 (400)
T PRK10070 242 EVVQVGTPDEILN 254 (400)
T ss_pred EEEecCCHHHHHh
Confidence 9999998887754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=390.14 Aligned_cols=211 Identities=27% Similarity=0.411 Sum_probs=188.8
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+|+++++++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4889999999974 4799999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC--C-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 -SDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP--P-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 -~~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+.+||+||++. .+...|++||+.+.....+...++..+++.++++.+|+. . .++++.+||||||||++|||||+.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 24899999973 233479999998765444556666677888999999996 3 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++.. |||+++|++|+++.+++++++.+
T Consensus 162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999764 8999999999999965 99999999999999999887654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=379.58 Aligned_cols=211 Identities=29% Similarity=0.483 Sum_probs=190.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
++++++++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 68899999999989999999999999999999999999999999999999999999999999764 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+||++.+++.+|+.||+.+..... .....+.+.++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999999998754332 2233344567888999999965 68899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+|||+.++..+.+.+++++++|+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999998778999999999998866 99999999999999988877643
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=381.24 Aligned_cols=211 Identities=28% Similarity=0.456 Sum_probs=189.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------------- 83 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 68899999999988999999999999999999999999999999999999999999999998754
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|+||++.+++.+|+.||+.+... ..+.......+++.++++.+++.. .++++.+||||||||++|||||+.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 248999999999998999999986432 123334445567888999999976 6889999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999998778999999999999966 99999999999999988876643
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=397.00 Aligned_cols=214 Identities=23% Similarity=0.357 Sum_probs=192.5
Q ss_pred cceEEEEeEEEEECC-------------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 17 KHSVAVTSAYKKIGN-------------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-------------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+.+|+++|+++.|+. ..+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 457899999999962 5799999999999999999999999999999999999999999999999875
Q ss_pred ------------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc--CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChh
Q psy6612 84 ------------SDIGYMPQEL--ALHGELSIRETFRYYGYMF--DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGG 145 (291)
Q Consensus 84 ------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgG 145 (291)
++++||||++ .+++.+|+.+|+.+....+ +.+.++.++++.++++.+++. . .++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 3599999998 6888999999998754333 245566677888999999994 3 68999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 146 qkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
|||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||++++.. ||++++|.+|++++.|+
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~ 245 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999999999854 8999999999999976 99999999999999999
Q ss_pred hhHHHHH
Q psy6612 224 HHDIVES 230 (291)
Q Consensus 224 ~~~~~~~ 230 (291)
.+++...
T Consensus 246 ~~~i~~~ 252 (331)
T PRK15079 246 YDEVYHN 252 (331)
T ss_pred HHHHHcC
Confidence 8887653
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-53 Score=380.92 Aligned_cols=209 Identities=30% Similarity=0.409 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------Ce
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~ 85 (291)
||+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 578999999998 78899999999999999999999999999999999999999999999999874 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
++|+||++.+++.+|+.||+.+.... .+......++++.++++.+++.. .++++.+||||||||++|||||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999999999999999764211 11112334567888999999965 6889999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++++|++|+++..++++++
T Consensus 161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999975 48999999999999965 999999999999998887765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-53 Score=379.18 Aligned_cols=209 Identities=30% Similarity=0.447 Sum_probs=185.4
Q ss_pred EEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------CeE
Q psy6612 20 VAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~i 86 (291)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999987 8899999999999999999999999999999999999999999999999765 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+|+||++.+++.+|+.||+.+.... .+.......+++.++++.+++.. .++++.+|||||||||+|||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999764211 11122334456788999999975 68899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999975 48999999999999975 9999999999999998887653
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=375.65 Aligned_cols=204 Identities=27% Similarity=0.380 Sum_probs=183.0
Q ss_pred cceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..+|++++++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 457899999999975 3699999999999999999999999999999999999999999999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||||||||++|||||+.
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 259999999999999999999987543333334445667889999999975 688999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEE
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIG 220 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~ 220 (291)
+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++++..||++++|++|++++
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999754 899999999999986699999999999865
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-53 Score=379.74 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=187.9
Q ss_pred EEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 20 VAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+++++++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999988 7899999999999999999999999999999999999999999999999875 258999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
||++.+++.+|++||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 160 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD 160 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999987644444444445567888999999973 57899999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 161 EPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 224 (242)
T cd03295 161 EPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224 (242)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999754 8999999999999866 9999999999999988876653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-53 Score=382.32 Aligned_cols=206 Identities=30% Similarity=0.435 Sum_probs=185.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~ 94 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+||++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 57899999999988999999999999999999999999999999999999999999999999876 35899999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+++.+|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 9998999999987543334444445567889999999975 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEe--CCEEEEEech
Q psy6612 174 PILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMR--DDQYIGRLVH 224 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~--~G~i~~~~~~ 224 (291)
+.++..+.++|++++ +.|+|||++|||++++.. ||++++|+ +|+++.+++.
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999985 458999999999999976 99999998 5999887654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-53 Score=376.93 Aligned_cols=210 Identities=22% Similarity=0.360 Sum_probs=188.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 67899999999988999999999999999999999999999999999999999999999999865 24999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcccc--------CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMF--------DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~--------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+||++.+++.+|+.||+.+..... +...+..++++.++++.+++.. .++++++||||||||++|||||+.+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998753211 1122334567888999999975 6889999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 162 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 162 PKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred CCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999975 6899999999999976 99999999999999988777643
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-53 Score=389.74 Aligned_cols=209 Identities=26% Similarity=0.429 Sum_probs=187.8
Q ss_pred EEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
+++++++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999974 5799999999999999999999999999999999999999999999999865
Q ss_pred --CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.+||+||++ .++ ..|++||+.+.....+....+.++++.++++.++|. . .++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2499999997 455 469999998765444555555667888999999996 4 58999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..++++|++++++ |.|||++|||++++.. |||+++|++|+++.+++++++..
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999754 8999999999999965 99999999999999999887654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=372.03 Aligned_cols=198 Identities=33% Similarity=0.539 Sum_probs=180.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++++++++|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4689999999888999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.++...++. .++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 9999999999999876443332 1346778899999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 99999999999999998778999999999999976 999999999998764
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-53 Score=376.18 Aligned_cols=205 Identities=30% Similarity=0.454 Sum_probs=182.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-----TLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~~g~~~----------- 83 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 46899999999889999999999999999999999999999999999999 99999999999874
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh-HHHHHHHHHHHHHcCCCC-CCCC--cCcCChhHHHHHHHHHHHhcC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLLELPP-AKKI--VGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~-~~~~--~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|+||++.++ .+|++||+.+....++... .+..+++.++++.+++.. .+++ +.+||||||||++|||||+.+
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE 159 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence 2499999999888 7899999987544333222 224567888999999975 4555 599999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++|||||||+|||+.++..+++.|++++++ +|||++|||++++.. ||++++|++|+++..+++++
T Consensus 160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 160 PEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999876 999999999999875 99999999999998887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=387.83 Aligned_cols=210 Identities=24% Similarity=0.358 Sum_probs=189.2
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
||+++|+++.|+. +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5889999999963 2599999999999999999999999999999999999999999999999874
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ---~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.+||+||++ .+++ .|+.||+.|....++.+..+.++++.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 2489999997 5665 59999998865444555566677888999999995 3 5899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++|+++.+|+++++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 99999999999999999999999999999998778999999999999965 99999999999999999888754
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=379.58 Aligned_cols=213 Identities=26% Similarity=0.417 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------- 83 (291)
+++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999764
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC-C-CCCcCcCChhHHHHHH
Q psy6612 84 ---------SDIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP-A-KKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ---------~~ig~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQrv~ 151 (291)
+.++|+||++.+++.+|++||+.+.. ...........+++.++++.+|+.. . ++++.+||||||||++
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 24899999999999999999997642 2223334445667889999999975 3 7889999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+.+|++|||||||+|||+.+++.+.++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 241 (257)
T PRK10619 163 IARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFG 241 (257)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhh
Confidence 9999999999999999999999999999999999998779999999999999976 99999999999999988776543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=376.74 Aligned_cols=209 Identities=29% Similarity=0.458 Sum_probs=188.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------------- 83 (291)
+|+++|++++|+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 57899999999988999999999999999999999999999999999999999999999999864
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHh-ccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYY-GYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+. ....+....+..+++.++++.+|++. .++++.+||||||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2499999999999999999999642 22233334444567888999999975 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++++++
T Consensus 162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999998778999999999999965 999999999999998887654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=387.49 Aligned_cols=210 Identities=24% Similarity=0.360 Sum_probs=187.8
Q ss_pred eEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 5789999999974 4699999999999999999999999999999999999999999999999864
Q ss_pred ---CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ---~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
..+||+||++ .++ .+|+.||+.+....++...++..+++.++++.++++ . .++++.+||||||||++|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2489999997 355 579999998754434444555667788999999996 4 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999887654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-53 Score=371.25 Aligned_cols=200 Identities=32% Similarity=0.629 Sum_probs=181.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|++++++++|+++++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 46899999999889999999999999 9999999999999999999999999999999999764 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999987554444444445567888999999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
|||+.++..+.+.|+++++ +.|||++|||++++.. ||++++|++|+++..
T Consensus 160 ~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 160 GLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999975 5899999999999965 999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-53 Score=371.22 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=179.4
Q ss_pred EEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------CeE
Q psy6612 20 VAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~~i 86 (291)
+++++++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 6899999999999999999999999999999999999999999999999865 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+|++|++.+++.+|+.||+.+....++...++..+++.++++.++++. .++++.+||||||||++|||||+.+|+++||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 160 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA 160 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999987644334344445567888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999997678999999999999976 999999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=379.32 Aligned_cols=211 Identities=23% Similarity=0.386 Sum_probs=188.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 68899999999988999999999999999999999999999999999999999999999999865 358999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh------cCCCE
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL------HNPKL 162 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~------~~p~l 162 (291)
||++.+++.+|++||+.+.........+...+.+.++++.+++.. .++++.+||||||||++|||||+ .+|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999998888999999987533222222334456788999999965 68899999999999999999999 59999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+.+.|++++ ++|.|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 162 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 162 LLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 99999999999999999999999997 668999999999999975 99999999999999888777654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=378.01 Aligned_cols=212 Identities=25% Similarity=0.417 Sum_probs=188.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.+|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 478999999999989999999999999999999999999999999999999999999999999875 1389
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccc----------cCC-----ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYM----------FDM-----TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~----------~~~-----~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~ 151 (291)
|+||++.+++.+|+.||+.+.... +.. ...+..+.+.++++.+|+.. .++++.+||||||||++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 999999999999999999874221 110 11123356778899999965 68999999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+.+|++|||||||+|||+.++..+++.|.+++++ |+|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 243 (255)
T PRK11300 164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRN 243 (255)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhh
Confidence 999999999999999999999999999999999999865 8999999999999966 99999999999999988877644
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=385.31 Aligned_cols=211 Identities=23% Similarity=0.294 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
|++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.+|
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 578999999995 56799999999999999999999999999999999999999999999999875 2499
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++. .+...|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999985 3566899999987644444455555677888999999976 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+++.|++++++|.|||++|||++++..||++++|++|+++..|+++++..
T Consensus 161 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 161 DEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999877999999999999996699999999999999998877654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-53 Score=390.58 Aligned_cols=211 Identities=25% Similarity=0.411 Sum_probs=188.6
Q ss_pred eEEEEeEEEEECCE-----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNH-----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~-----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+|+++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48899999999753 599999999999999999999999999999999999999999999987532
Q ss_pred -----------------------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CC
Q psy6612 84 -----------------------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AK 136 (291)
Q Consensus 84 -----------------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~ 136 (291)
+.+||+||++ .++ ..||+||+.|.....+.+.++..+++.++++.+|+. . .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 2489999986 344 469999998765545566666777889999999996 4 68
Q ss_pred CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
+++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++++.. |||+++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999999998779999999999999865 999999999
Q ss_pred CEEEEEechhHHHHH
Q psy6612 216 DQYIGRLVHHDIVES 230 (291)
Q Consensus 216 G~i~~~~~~~~~~~~ 230 (291)
|+++.+++++++...
T Consensus 241 G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 241 GKIIKDGDTYDILSD 255 (305)
T ss_pred CEEEEECCHHHHhcC
Confidence 999999998887543
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=376.71 Aligned_cols=209 Identities=29% Similarity=0.449 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~---------- 83 (291)
||+++|++++|++..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|+++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 578999999999889999999999999999999999999999999999999998 99999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+.....+ .+..+..+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 24999999999988 899999987543333 23344556788899999996 4 5788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999976 4899999999999966 99999999999999988876643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=378.27 Aligned_cols=219 Identities=24% Similarity=0.422 Sum_probs=192.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 58899999999999999999999999999999999999999999999999999999999999875 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhcc----ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 90 PQELALHGELSIRETFRYYGY----MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||++.+++.+|++||+.+... .++.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999888999999987421 122212334556788999999965 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
|||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++.+++... ..+...|
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--~~~~~~~ 235 (255)
T PRK11231 162 LDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP--GLLRTVF 235 (255)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH--HHHHHHh
Confidence 999999999999999999999997678999999999999966 999999999999998887776543 3344444
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-53 Score=370.31 Aligned_cols=199 Identities=33% Similarity=0.533 Sum_probs=179.7
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig~ 88 (291)
++++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4689999999988999999999999999999999999999999999999999999999999865 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+||++.+++.+|+.||+.+... ..+....+..+++.++++.++++. .++++.+||||||||++|||||+.+|++||||
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 160 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD 160 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999987532 223334445567888999999975 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
|||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|++
T Consensus 161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999998778999999999999976 999999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-53 Score=370.90 Aligned_cols=196 Identities=27% Similarity=0.421 Sum_probs=175.4
Q ss_pred EEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEc
Q psy6612 22 VTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMP 90 (291)
Q Consensus 22 ~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~ 90 (291)
+++++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+|
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 6889999987 8899999999999999999999999999999999999999999999999865 3589999
Q ss_pred CCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 91 QELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 91 q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
|++. .++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||||
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 161 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEP 161 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9985 3567899999987543333334444567888999999965 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+
T Consensus 162 t~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 162 TAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999998678999999999999977 99999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-53 Score=385.17 Aligned_cols=209 Identities=29% Similarity=0.432 Sum_probs=188.0
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEE
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIG 87 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig 87 (291)
.+++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 467899999999999999999999999999999999999999999999999999999999764 2599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++||||
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999999999999987544333334444567888999999975 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+|||+.++..+.+.|+++++ .|+|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 250 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILT 250 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999975 48999999999999866 99999999999999988877654
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-53 Score=370.19 Aligned_cols=194 Identities=29% Similarity=0.396 Sum_probs=173.8
Q ss_pred EEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCCC
Q psy6612 22 VTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQELA 94 (291)
Q Consensus 22 ~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~~ 94 (291)
++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+||+||++.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 5789999987 8899999999999999999999999999999999999999999999999875 36999999974
Q ss_pred -CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 -LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 -l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+..+|+.||+.++....+ . ..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 157 (205)
T cd03226 82 YQLFTDSVREELLLGLKELD--A--GNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGL 157 (205)
T ss_pred hhhhhccHHHHHhhhhhhcC--c--cHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccC
Confidence 2345799999987543222 1 1246788999999975 68899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~ 219 (291)
|+.+++.+.+.|++++++|.|||++||+++++.. ||++++|++|+++
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 158 DYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999997778999999999999976 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=383.53 Aligned_cols=211 Identities=24% Similarity=0.389 Sum_probs=187.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig 87 (291)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 58899999999988899999999999999999999999999999999999999999999999875 2499
Q ss_pred EEcCCCCC-CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+ +...|+.+|+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999753 344589999987543334444445567788999999965 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999998678999999999999965 99999999999999998877654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=374.56 Aligned_cols=210 Identities=24% Similarity=0.451 Sum_probs=186.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||++++++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 368899999999988999999999999999999999999999999999999999999999999864 2499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|++|++.+++.+|+.||+.+..... ......+.+.++++.+ ++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illl 161 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9999999999899999998743221 1223344566777777 4654 5778999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.+.|++++++|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999998778999999999999865 99999999999999999887754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=384.11 Aligned_cols=213 Identities=22% Similarity=0.323 Sum_probs=191.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+.+|+++++++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 347899999999974 5799999999999999999999999999999999999999999999999876 35
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||+||++. +++..|+.||+.+.....+...++..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 162 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII 162 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999983 6667899999987644444455555677889999999976 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..++++|++++++ |.|||++||+++++..||++++|++|+++..++.+++..
T Consensus 163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999865 899999999999997799999999999999998776654
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=389.84 Aligned_cols=213 Identities=18% Similarity=0.295 Sum_probs=191.2
Q ss_pred ceEEEEeEEEEEC----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----
Q psy6612 18 HSVAVTSAYKKIG----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---- 83 (291)
.+|+++|+++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4788999999995 25799999999999999999999999999999999999999999999999875
Q ss_pred --------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHH
Q psy6612 84 --------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRI 150 (291)
Q Consensus 84 --------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv 150 (291)
+.++|+||++ .+++.+|+.+++......+ +....+.++++.++++.+|+.. .++++++|||||||||
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv 163 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI 163 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence 3599999998 5888899999987644332 3445556678899999999963 5899999999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+|||||+.+|++||+||||++||+.++.+++++|+++++ .|.|||+||||++.+.. ||++++|.+|++++.|+.+++.
T Consensus 164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999975 48999999999999976 9999999999999999988876
Q ss_pred HH
Q psy6612 229 ES 230 (291)
Q Consensus 229 ~~ 230 (291)
+.
T Consensus 244 ~~ 245 (327)
T PRK11308 244 NN 245 (327)
T ss_pred cC
Confidence 53
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-52 Score=383.20 Aligned_cols=212 Identities=28% Similarity=0.391 Sum_probs=189.7
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------Ce
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SD 85 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ 85 (291)
.+|+++|++++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4788999999996 57899999999999999999999999999999999999999999999999875 24
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||+||++. .+...|++||+.+....++.+..+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL 163 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999973 2345799999987544444555555677889999999976 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..++++|++++++ |.|||++||+++++.. |||+++|++|+++..|+++++..
T Consensus 164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999864 8999999999999975 99999999999999999887654
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=374.96 Aligned_cols=212 Identities=28% Similarity=0.418 Sum_probs=187.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred cceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4578999999999988999999999999999999999999999999999999987 499999999865
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
..++|+||++.+++.+|+.||+.+.....+. +.+...+++.++++.+++. . .++++.+||||||||++||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA 161 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence 2489999999999999999999875432221 2334455678889999873 2 5788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (253)
T PRK14267 162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFE 237 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999975 6899999999999866 99999999999999998877653
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=388.15 Aligned_cols=218 Identities=26% Similarity=0.342 Sum_probs=191.6
Q ss_pred cccccccceEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--
Q psy6612 11 PEIIEVKHSVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-- 83 (291)
Q Consensus 11 ~~~~~~~~~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-- 83 (291)
|....-+.+|+++|+++.|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 13 ~~~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 13 PNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred CCCCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence 434444678999999999974 3699999999999999999999999999999999999999999999998543
Q ss_pred -----------------------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CC
Q psy6612 84 -----------------------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AK 136 (291)
Q Consensus 84 -----------------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~ 136 (291)
+.+||+||++ .+++ .|++||+.+.....+.+.++..+++.++++.++++ . .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 171 (320)
T PRK13631 93 KKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLE 171 (320)
T ss_pred ccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhc
Confidence 2489999997 4665 49999998754333445555667788999999996 4 68
Q ss_pred CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
+++.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++
T Consensus 172 ~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~ 251 (320)
T PRK13631 172 RSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251 (320)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999999999999998778999999999999865 999999999
Q ss_pred CEEEEEechhHHHH
Q psy6612 216 DQYIGRLVHHDIVE 229 (291)
Q Consensus 216 G~i~~~~~~~~~~~ 229 (291)
|+++..|+++++..
T Consensus 252 G~i~~~g~~~~~~~ 265 (320)
T PRK13631 252 GKILKTGTPYEIFT 265 (320)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999887654
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=388.69 Aligned_cols=212 Identities=22% Similarity=0.328 Sum_probs=188.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC----CCccEEEECCEec-------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~------- 83 (291)
+|+++|+++.|+. ..+|+||||+|++||++||+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5889999999976 579999999999999999999999999999999999997 4899999999886
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRRI 150 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQrv 150 (291)
+.++|+||++ .+++.+|+.+++......+ +...++.++++.++++.+|+.. .++++++|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 1499999998 5788899998886543332 3344556678899999999963 4789999999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||++++.. ||++++|.+|++++.|+.+++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999985 58999999999999965 9999999999999999988876
Q ss_pred HH
Q psy6612 229 ES 230 (291)
Q Consensus 229 ~~ 230 (291)
+.
T Consensus 243 ~~ 244 (326)
T PRK11022 243 RA 244 (326)
T ss_pred hC
Confidence 53
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=380.55 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=188.7
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
++++++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+|
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 4688999999995 56799999999999999999999999999999999999999999999999875 2499
Q ss_pred EEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++. .+...|+.||+.+.....+...+...+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil 161 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL 161 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999974 3335799999987544334445555667889999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..++++|++++++ |.|||++||+++++.. ||++++|++|+++..|+++++.+
T Consensus 162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 9999999999999999999999865 8999999999999965 99999999999999999887754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-52 Score=382.61 Aligned_cols=209 Identities=24% Similarity=0.390 Sum_probs=187.1
Q ss_pred EEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999964 4699999999999999999999999999999999999999999999999775
Q ss_pred --CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.|||+||++ .+++ .|+.||+.+.....+...++..+++.++++.+|+. . .++++.+||||||||++|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2489999997 4565 49999998764444455556667888999999996 4 57899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.++|+++++ .|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999975 58999999999999865 99999999999999999877654
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-52 Score=376.81 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 468999999999988999999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccc-c---CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 89 MPQELALHGELSIRETFRYYGYM-F---DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~-~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||++.+++.+|+.||+.+.... . +.......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 169 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCL 169 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999888889999999864321 1 1112233456788999999965 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.+++.+.+.|.+++++ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 170 lLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999754 8999999999999965 99999999999999988877654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-52 Score=364.55 Aligned_cols=212 Identities=28% Similarity=0.439 Sum_probs=190.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||++++++..||..++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.|+|+++ ..|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 578999999999999999999999999999999999999999999999999999999999999998 3499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcC-CCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||||...+|+.|||.||+..+...... +.......+++.+.|- |.. .+++.++|||||||.++|||||+.+|++|+|
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEe
Confidence 999999999999999999876543321 1122222677788775 444 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||.||-|.-.+++.+.|++++++ |.||++|.++...+.. +||.++|.+|+++.+|+.+++.++
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 9999999999999999999999965 7899999999999966 999999999999999999988765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-53 Score=355.97 Aligned_cols=209 Identities=25% Similarity=0.366 Sum_probs=187.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
|+.++++.++|+..+ -.++++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++. +.++++||
T Consensus 1 ~l~L~~V~~~y~~~~--~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLP--MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcce--EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 466789999997654 357889999999999999999999999999999999999999999986 56999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
+.++|..+||.+|+.++..-.-.-..+.+++++.++..+|+.. .++.|.+|||||||||+|||+|+++-+||+||||||
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 9999999999999987543211113455778899999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||.-+.+++.++.+++ +++.|++||||+++++.. +|+++++++|+|.++|+.+++..
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~ 219 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhc
Confidence 999999999999999998 568999999999999977 99999999999999999887754
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=365.54 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=176.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
++++|++++|+++.. |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 468999999987653 99999999999999999999999999999999999999999999876 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+.........+..++++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~ 158 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158 (211)
T ss_pred cccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999986532111112234557888999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||+.++..+++.|+++++ .|+|||++||+++++.. ||++++|++|+++..
T Consensus 159 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 159 LDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 999999999999999975 48999999999999966 999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=373.03 Aligned_cols=210 Identities=28% Similarity=0.386 Sum_probs=186.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------C
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------~ 84 (291)
+|++++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++ +
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58899999999988999999999999999999999999999999999999974 799999999875 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral~ 157 (291)
.+||+||++.+++.+|+.||+.+....... ...+..+.+.++++.+++.. .++++.+||||||||++|||||+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 599999999988889999999875432221 23444567888999999842 57889999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFT 234 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHc
Confidence 99999999999999999999999999999864 7999999999999865 99999999999999998877654
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-52 Score=368.33 Aligned_cols=198 Identities=30% Similarity=0.507 Sum_probs=174.5
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCC-
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALH- 96 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~- 96 (291)
++|++++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.++
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDR 81 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccccc
Confidence 57899999988999999999999999999999999999999999999999999999999865 5699999998763
Q ss_pred -CCCCHHHHHHHhccccC----CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 97 -GELSIRETFRYYGYMFD----MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 97 -~~ltv~enl~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
..+|++||+.+...... .......+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 82 DFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred CCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 33799999987532211 122334567888999999965 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++| ++.
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 999999999999999998778999999999999976 9999999886 444
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=375.88 Aligned_cols=215 Identities=25% Similarity=0.370 Sum_probs=190.7
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+-+++|+++|++++|+++.+|+++||++.+||+++|+||||||||||+++|+|+++|++|+|.++|+++ ..
T Consensus 3 ~~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 3 ESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred ccccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 345689999999999999999999999999999999999999999999999999999999999999875 25
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
++|+||++.+++.+|++||+.+.... .....+....++.++++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p 162 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQET 162 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCC
Confidence 99999999999889999999864211 11112233456788999999965 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 163 AIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999999999999999999999764 8999999999999866 99999999999999998877654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=376.73 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=183.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQE 92 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~ 92 (291)
..+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4568899999999988999999999999999999999999999999999999999999999999875 469999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|++||+.+... . ....++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 90 ~~l~~~~tv~enl~~~~~--~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~ 163 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLK--G----QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163 (257)
T ss_pred ccCCCCCcHHHHHHhccc--c----hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 999998999999986421 1 12356788999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
||+.++..+.+.|+++.+ .|+|||++|||++++.. ||++++|++|+++.+++.
T Consensus 164 LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (257)
T PRK11247 164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTV 218 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccc
Confidence 999999999999999864 58999999999999865 999999999999987754
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=369.10 Aligned_cols=203 Identities=26% Similarity=0.374 Sum_probs=177.1
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
+|++++++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 57899999999765 799999999999999999999999999999999999999999999999864
Q ss_pred -CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCC-hHHHHHH-HHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMT-DDQIETR-SKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~-~~~~~~~-~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|++|++ .+++.+|+++|+.+....++.. .....+. +.++++.+++. . .++++.+||||||||++|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 2599999998 5677899999998754333221 1222222 35788999994 3 5889999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999865 8999999999999975 999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-52 Score=369.45 Aligned_cols=206 Identities=28% Similarity=0.470 Sum_probs=183.0
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v 89 (291)
|+++|+++.|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 4689999999988999999999999999999999999999999999999999999999999775 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcC-CCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||++.+++.+|+.||+.+....++.. ..+.+.++++.++ +.. .++++.+||||||||++|||||+.+|+++||||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999998754333222 1234566777776 444 688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||+|||+.++..+.++|.+++++ |+|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999864 8999999999999976 9999999999999999887763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-52 Score=374.42 Aligned_cols=209 Identities=28% Similarity=0.439 Sum_probs=186.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
.+|++++++++|+++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++
T Consensus 11 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 368899999999988999999999999999999999999999999999999975 899999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+....++.+.....+++.++++.+++. . .++++.+|||||||||+|||||
T Consensus 91 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 169 (258)
T PRK14268 91 LRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169 (258)
T ss_pred HhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHH
Confidence 24999999999888 89999998764434444444455678899999883 2 5788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..++++|+++++ ++|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 170 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999964 7999999999999966 9999999999999998887664
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=380.43 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=190.3
Q ss_pred ccceEEEEeEEEEECC------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 16 VKHSVAVTSAYKKIGN------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
+++||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~ 80 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccH
Confidence 4678999999999963 5799999999999999999999999999999999999999999999999775
Q ss_pred ----CeEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 ----SDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 ----~~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.+||+||++. .+...|+.+|+.|.....+....+..+++.++++.+|+.. .++++.+||||||||++|||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 81 WDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 24899999974 2334699999987654444455555677889999999976 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|+++||||||+|||+.++..+++.|+++++ .|.|||++||+++++..||++++|++|+++..++++++..
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999975 4899999999999986699999999999999999887654
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=372.90 Aligned_cols=210 Identities=28% Similarity=0.460 Sum_probs=187.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------------
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------- 83 (291)
|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 4689999999988999999999999999999999999999999999999999999999999764
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|++|++.+++.+|+.||+.+... ..+.......+.+.++++.+++.. .++.+.+||||||||++||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara 160 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA 160 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence 249999999999999999999986422 123334445567888999999965 688999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T TIGR03005 161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFR 236 (252)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999764 8999999999999965 99999999999999988776643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=368.17 Aligned_cols=210 Identities=23% Similarity=0.319 Sum_probs=185.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++++|++.. .++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 578999999998654 399999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+.........+...+++.++++.++++. .++++.+||||||||++||||++.+|+++||||||+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999976422110112234566888999999965 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.+++.+.++|+++.+ .|+|||++||+++++.. ||++++|++|+++..++.+++...
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999975 48999999999999866 999999999999999988776654
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=377.90 Aligned_cols=211 Identities=27% Similarity=0.403 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeE
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~i 86 (291)
||+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +.+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 578999999996 46799999999999999999999999999999999999999999999999875 248
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|+||++. .+...|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999973 3334699999986533333444455567888999999975 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 161 lDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999998678999999999999975 99999999999999999887654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=372.38 Aligned_cols=210 Identities=24% Similarity=0.393 Sum_probs=187.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEc
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMP 90 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~ 90 (291)
|+++|+++.|+++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 5789999999999999999999999999999999999999999999999999999999999875 2499999
Q ss_pred CCCCCCCCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 91 QELALHGELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|++.+++.+|+.||+.+.... +.....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 161 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLL 161 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999888889999999874211 11122233456788999999965 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.+.|++++++|.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 162 DEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred cCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999998778999999999999965 99999999999999998877654
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=395.75 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=187.8
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE----ec-------------Ce
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR----QI-------------SD 85 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~----~~-------------~~ 85 (291)
..+.++||...+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++ ++
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 34556778888999999999999999999999999999999999999999999999996 22 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|+||++.+++.+|+.||+.+.....+.+..+.++++.++++.+|+.. .++++.+|||||||||+|||||+.+|++||
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999998755555555566678899999999976 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+.+.|.+++++ ++|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 188 lDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~ 254 (382)
T TIGR03415 188 MDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVL 254 (382)
T ss_pred EECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999864 8999999999999965 99999999999999999988754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=377.98 Aligned_cols=209 Identities=24% Similarity=0.382 Sum_probs=185.5
Q ss_pred EEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 20 VAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
|++++++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 789999999974 4699999999999999999999999999999999999999999999999764
Q ss_pred --CeEEEEcCCC--CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQEL--ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.++|+||++ .+++ .|++||+.+....++...++..+++.++++.+++. . .++++.+||||||||++|||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 2489999997 4555 69999998754333444445556778899999996 3 58899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998678999999999999965 99999999999999988877644
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=370.98 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=184.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 57899999999988999999999999999999999999999999999999999999999999875 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
||++.+++ .|+.||+.+.....+ ....++.++++.+++. . .++++.+||||||||++|||||+.+|++|||||
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99998887 599999876432221 1234677889999996 3 578999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++++|++|+++..+++.++..
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhc
Confidence 9999999999999999999976 48999999999999876 99999999999999888877643
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=385.54 Aligned_cols=214 Identities=23% Similarity=0.352 Sum_probs=190.8
Q ss_pred cceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec------
Q psy6612 17 KHSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI------ 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~------ 83 (291)
+.+|+++|+++.|+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|+++
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45789999999994 367999999999999999999999999999999999999996 99999999875
Q ss_pred -------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHH
Q psy6612 84 -------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 -------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQr 149 (291)
+.|+|+||++ .+++.+|+.+++......+ +....+..+++.++++.+++.. .++++++|||||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 2599999998 6889999999987644333 2445556678889999999963 367999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|+|||||+.+|++||+||||+|||+.++..++++|++++++ |.|+|++|||++.+.. ||++++|.+|++++.|+.+++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i 249 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999854 8999999999999976 999999999999999998887
Q ss_pred HHH
Q psy6612 228 VES 230 (291)
Q Consensus 228 ~~~ 230 (291)
...
T Consensus 250 ~~~ 252 (330)
T PRK09473 250 FYQ 252 (330)
T ss_pred HhC
Confidence 653
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-52 Score=379.45 Aligned_cols=213 Identities=21% Similarity=0.281 Sum_probs=190.6
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~-------- 83 (291)
+.+|+++++++.|++ +++++++||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 347899999999964 579999999999999999999999999999999999999987 8999999876
Q ss_pred -CeEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 84 -SDIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 84 -~~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+.+||+||++. +++..|++||+.+.....+.+..+..+++.++++.+++.. .++++.+|||||+||++|||||+.+|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P 162 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP 162 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 35999999984 6667899999987544444455555677889999999976 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++..||++++|++|+++..++++++..
T Consensus 163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999754 899999999999996799999999999999999877654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=374.62 Aligned_cols=211 Identities=26% Similarity=0.429 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEC---------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 19 SVAVTSAYKKIG---------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 19 ~l~~~~l~~~~~---------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
||+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 688999999995 36899999999999999999999999999999999999999999999999865
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++ .+++.+|+.||+.+.... .........+++.++++.+++. . .++++.+||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2499999997 466788999999764322 2233334456788899999995 4 588999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+++|++|||||||+|||+.++..+++.|++++++ |+|||++|||++.+.. ||++++|++|+++..++++++..
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999999864 8999999999999975 99999999999999999887653
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-52 Score=377.75 Aligned_cols=212 Identities=23% Similarity=0.301 Sum_probs=188.5
Q ss_pred ceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
.|++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4788999999995 56899999999999999999999999999999999999999999999999875 248
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|+||++. .++.+|++||+.+.....+...++.+.++.++++.+++.. .++++.+||||||||++|||||+.+|++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIII 165 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999984 6677899999987543333444445667888999999975 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..++++|++++++ ++|||++||+++++..||++++|++|+++..++.+++..
T Consensus 166 LDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 166 FDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999765 589999999999987799999999999999888776544
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=376.11 Aligned_cols=213 Identities=21% Similarity=0.303 Sum_probs=187.5
Q ss_pred cceEEEEeEEEEECC---------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----
Q psy6612 17 KHSVAVTSAYKKIGN---------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---- 83 (291)
++||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 467899999999962 4799999999999999999999999999999999999999999999999875
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 -----SDIGYMPQELA--LHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 -----~~ig~v~q~~~--l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++. +++.+|+.+++.+..... .....+..+.+.++++.+++. . .++++.+||||||||++||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 25999999975 677789999997654332 233344456788899999994 4 5788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|.+++++ |.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 239 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhc
Confidence 9999999999999999999999999999999999754 8999999999999976 99999999999999888776654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=368.73 Aligned_cols=207 Identities=24% Similarity=0.284 Sum_probs=181.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec----------CeEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~----------~~ig 87 (291)
|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 46899999999889999999999999999999999999999999999995 79999999999864 1289
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccC-------CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHHHHh
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFD-------MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAVSLL 157 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAral~ 157 (291)
|++|++.+++.+|+.||+.+...... ....+..+++.++++.+++. . .++++. +||||||||++|||||+
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~ 160 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL 160 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence 99999999999999999976432211 12233345778899999996 3 577787 59999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~ 226 (291)
.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..+++++
T Consensus 161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999998778999999999999964 79999999999998887653
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=364.85 Aligned_cols=203 Identities=32% Similarity=0.541 Sum_probs=184.2
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~~ 94 (291)
|++++++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 4689999999989999999999999999999999999999999999999999999999999865 46999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+++.+|++||+.+....++.. +.++.++++.++++. .++++.+||||||||++||||++.+|++|||||||+|||
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLP----DSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCC----HHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 999899999998754433322 245778899999976 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..+++.+
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999998778999999999999965 99999999999999887653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=370.42 Aligned_cols=209 Identities=28% Similarity=0.382 Sum_probs=183.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~--------- 83 (291)
++|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+.+ |++|+|.++|+++
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 35778999999998899999999999999999999999999999999999974 6899999999765
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ .|+.||+.+.....+. ..+...+++.++++.+++.. .++++.+|||||||||+||||
T Consensus 85 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 163 (253)
T PRK14242 85 LRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARA 163 (253)
T ss_pred HhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 24999999999888 5999999875433332 22334567788899999842 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 164 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 164 LAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999964 7899999999999966 9999999999999998877654
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=373.10 Aligned_cols=211 Identities=29% Similarity=0.451 Sum_probs=187.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI---------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~---------- 83 (291)
..+|+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 45788999999999999999999999999999999999999999999999999986 49999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRI 150 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv 150 (291)
+.++|+||++.+++.+|++||+.+.... .+....+.+.++.++++.+++.. .++++.+||||||||+
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv 161 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRV 161 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHH
Confidence 1489999999999999999999864311 01112334567888999999965 6889999999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 162 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 162 AIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred HHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999999999999999999999999975 48999999999999865 999999999999999998775
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=376.87 Aligned_cols=213 Identities=22% Similarity=0.293 Sum_probs=189.5
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
+.+|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 81 (277)
T PRK13642 2 NKILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRR 81 (277)
T ss_pred CceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhc
Confidence 347899999999974 3599999999999999999999999999999999999999999999999875 2
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.+||+||++. +++..|+.||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 82 KIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred ceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 4999999984 5667899999987543334444555567889999999965 6889999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+++.|++++++ |.|||++||+++++..||++++|++|+++..++++++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999865 899999999999997799999999999999998877654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=365.66 Aligned_cols=210 Identities=34% Similarity=0.487 Sum_probs=188.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++++++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.+|+.+....++.......+++.++++.+++.. .++.+.+||+|||||++|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g 160 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA 160 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999998999999987544444444445567788999999975 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.++..+.+.|++++++ |.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 9999999999999999864 8999999999999865 99999999999998887765543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=406.29 Aligned_cols=212 Identities=26% Similarity=0.413 Sum_probs=190.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
+.||+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++ +.+
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 2 QALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred CceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 4578999999999988999999999999999999999999999999999999999999999999865 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcccc---C-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMF---D-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~---~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+|+||++.+++.+|++||+.++...+ + .+..+.++++.++++.+++.. .++++++|||||||||+|||||+.+|+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESK 161 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998753321 1 223344567888999999976 689999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 162 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 162 VIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred EEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999998778999999999999976 9999999999999988877653
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=370.85 Aligned_cols=211 Identities=25% Similarity=0.359 Sum_probs=185.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 4578999999999988899999999999999999999999999999999999987 589999999764
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++ +|++||+.+.....+. ......+++.++++.+++. . .++++.+||||||||++|||
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 24999999998885 8999999875433322 2334456778889998872 2 57889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..++++|++++ ++.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 238 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFF 238 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999996 47899999999999866 99999999999999998877654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=384.34 Aligned_cols=211 Identities=20% Similarity=0.319 Sum_probs=185.6
Q ss_pred eEEEEeEEEEE----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC----CCccEEEECCEec-------
Q psy6612 19 SVAVTSAYKKI----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~----p~~G~I~~~g~~~------- 83 (291)
+|+++|++++| +...+|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|+++|+++
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68899999999 45789999999999999999999999999999999999996 5899999999875
Q ss_pred ------CeEEEEcCCCC--CCCCCCHHHHHHHhcccc---C---CChHHHHHHHHHHHHHcCCCC----CCCCcCcCChh
Q psy6612 84 ------SDIGYMPQELA--LHGELSIRETFRYYGYMF---D---MTDDQIETRSKEILKLLELPP----AKKIVGALSGG 145 (291)
Q Consensus 84 ------~~ig~v~q~~~--l~~~ltv~enl~~~~~~~---~---~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgG 145 (291)
+.|+|+||++. +++.+|+.+++.+....+ + ....+.++++.++++.+||.. .++++.+||||
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG 162 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHH
Confidence 25999999985 678899999997532111 1 112344567889999999963 37899999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 146 QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 146 qkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
|||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||+||||++++.. ||++++|.+|++++.|+
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~ 242 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999864 8999999999999976 99999999999999999
Q ss_pred hhHHHH
Q psy6612 224 HHDIVE 229 (291)
Q Consensus 224 ~~~~~~ 229 (291)
.+++..
T Consensus 243 ~~~i~~ 248 (330)
T PRK15093 243 SKELVT 248 (330)
T ss_pred HHHHHh
Confidence 888764
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-51 Score=374.74 Aligned_cols=214 Identities=25% Similarity=0.336 Sum_probs=189.7
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
.++|++++++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 347889999999975 4699999999999999999999999999999999999999999999999875 25
Q ss_pred EEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|+||++. +++..|+.+|+.+.....+...+...+++.++++.+++.. .++++.+||+|||||++|||||+.+|++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 164 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVI 164 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999985 6777899999987544333444455567788999999965 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||+|||+.++..+++.|++++++ |+|||++||+++++..||++++|++|+++..++++++.+.
T Consensus 165 lLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 165 ILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999754 8999999999999866999999999999999988776543
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-51 Score=369.62 Aligned_cols=211 Identities=25% Similarity=0.380 Sum_probs=186.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
.+++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++
T Consensus 3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 368899999999988999999999999999999999999999999999999974 799999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++.+|++||+.+....++. ......+.+.++++.+++. . .++++.+|||||||||+||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARA 162 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 2499999999999999999999875433332 2344456778889999883 2 578899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe------CCEEEEEechhHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR------DDQYIGRLVHHDIV 228 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~------~G~i~~~~~~~~~~ 228 (291)
|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||+++++.. ||++++|+ +|++++.++++++.
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 163 IAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHH
Confidence 9999999999999999999999999999999964 6899999999999965 99999997 79999999887764
Q ss_pred H
Q psy6612 229 E 229 (291)
Q Consensus 229 ~ 229 (291)
.
T Consensus 242 ~ 242 (258)
T PRK14241 242 S 242 (258)
T ss_pred h
Confidence 3
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=367.40 Aligned_cols=212 Identities=30% Similarity=0.408 Sum_probs=187.4
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~------- 83 (291)
++.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred CccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46788999999999988999999999999999999999999999999999999875 799999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++ +|++||+.+....++. ...+..+++.++++.+++. . .++++.+||+|||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 159 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIA 159 (251)
T ss_pred HHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 24999999999887 8999999875433332 2334455677889999873 2 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14270 160 RTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFL 235 (251)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhc
Confidence 999999999999999999999999999999999976 5899999999999876 99999999999999998887643
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=370.32 Aligned_cols=212 Identities=27% Similarity=0.394 Sum_probs=187.1
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
...+|+++|++++|++.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 3567889999999998899999999999999999999999999999999999986 5899999999775
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++ +|++||+.+....+ +.+..+..+++.++++.+++. . .++++.+||||||||++||
T Consensus 90 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 168 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIA 168 (260)
T ss_pred HHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 24999999999887 79999998754322 234444556788899999973 2 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|++++ ++.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 169 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 244 (260)
T PRK10744 169 RGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFT 244 (260)
T ss_pred HHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999996 47899999999999965 99999999999999998877644
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=376.59 Aligned_cols=213 Identities=24% Similarity=0.344 Sum_probs=185.7
Q ss_pred ccceEEEEeEEEEECCE-----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNH-----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~-----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
+...|+++|++++|+++ ++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 3 ~~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (289)
T PRK13645 3 FSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKI 82 (289)
T ss_pred ccceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccc
Confidence 34568999999999764 499999999999999999999999999999999999999999999999763
Q ss_pred -------CeEEEEcCCCC--CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 -------SDIGYMPQELA--LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 -------~~ig~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|++|++. +++ .|+.||+.+.....+...+...+++.++++.+++. . .++++.+||||||||++|
T Consensus 83 ~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 83 KEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred ccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 24899999973 444 59999998754333334444456778899999994 4 688999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999975 48999999999999865 99999999999999988776643
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-51 Score=369.82 Aligned_cols=214 Identities=24% Similarity=0.409 Sum_probs=187.6
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-----c-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----I------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~------- 83 (291)
.+.+|++++++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred CCceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 3558999999999988899999999999999999999999999999999999999999999999986 3
Q ss_pred ------CeEEEEcCCCC--CCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQELA--LHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~~--l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
..++|+||++. +++.+|+.+|+.+....++. ...+...++.++++.+++. . .++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l 162 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence 14999999984 67778999998753222221 2234456778899999995 3 588999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 241 (258)
T PRK11701 163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLD 241 (258)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 8999999999999975 99999999999999998877643
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=360.64 Aligned_cols=197 Identities=31% Similarity=0.474 Sum_probs=175.8
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~i 86 (291)
+++ +++|+|+++.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 89999999876 99999999 99999999999999999999999999999999999764 259
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+|+||++.+++.+|+.+|+.+....+ .....++++.++++.+++.. .++++.+||||||||++|||||+.+|++|||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999999999998754322 22334557888999999975 6889999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
||||+|||+.+++.+.++|++++++ |+|||++||+++++.. ||++++|++|+++..|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999765 8999999999999965 9999999999987653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-51 Score=366.56 Aligned_cols=213 Identities=25% Similarity=0.367 Sum_probs=187.2
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~------- 83 (291)
+++.|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++
T Consensus 1 ~~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 1 MNNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred CCcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 3677999999999998899999999999999999999999999999999999986 4 689999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++.+|+.||+.+.....+ ....+..+++.++++.+++.. .++.+.+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 249999999999999999999986533322 223344566788899999842 4678999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFT 236 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999975 5899999999999965 99999999999999998877643
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=385.97 Aligned_cols=204 Identities=26% Similarity=0.440 Sum_probs=184.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------Ce
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ 85 (291)
||++ |++|+|+++.+ |+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 5777 99999988653 89999999999999999999999999999999999999999999764 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++|+||++.+|+.+|++||+.+... ....+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llL 151 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLL 151 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999987532 122456788999999976 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
|||||+|||+.++..+++.|++++++ |.|+|++|||++++.. ||++++|++|+++..++++++....
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 152 MDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999765 8999999999999976 9999999999999999998886643
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=404.14 Aligned_cols=212 Identities=28% Similarity=0.404 Sum_probs=191.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec----------C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI----------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~----------~ 84 (291)
+.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++ +
T Consensus 3 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred CceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 4579999999999998999999999999999999999999999999999999986 899999999875 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc--C-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF--D-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~--~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
.+||+||++.+++.+|++||+.+....+ + .+.+...+++.++++.+++.. .++++++|||||||||+|||||+.+|
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p 162 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQA 162 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 4999999999999999999998764322 1 233344567889999999975 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|||||||+|||+.++..++++|.+++++|+|||++|||++++.. ||++++|++|+++..++.+++.
T Consensus 163 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 163 RLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 9999999999999999999999999998778999999999999976 9999999999999998877654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-51 Score=366.61 Aligned_cols=209 Identities=32% Similarity=0.444 Sum_probs=184.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec---------CeE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~---------~~i 86 (291)
+++++|+++.|+++.+|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|+++|+++ +.+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4678999999998899999999999999999999999999999999999974 7999999999876 259
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+|+||++.+|+ .|++||+.+.....+. .....+.++.++++.+++. . .++++.+||||||||++|||||+.+
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999987 6999999875433332 1234455678899999994 2 4678899999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+++||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 161 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 161 PKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999864 8999999999999965 99999999999999998877654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-51 Score=359.54 Aligned_cols=202 Identities=24% Similarity=0.380 Sum_probs=178.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
++++|++++|+. .+.|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 57899999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+............++++.++++.++++. .++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 999999999999976432111112233456788999999965 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||+.++..+.++|+++.++ |.|||++||+++++.. ||++++|++|++++.+.
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 159 LDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999754 8999999999999865 99999999999987653
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-51 Score=364.66 Aligned_cols=210 Identities=30% Similarity=0.479 Sum_probs=188.8
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
+++++++++|+++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 4689999999999999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+|+.+|+.||+.+....++.......+.+.++++.+++.. .++.+.+||+||+||++|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~ 160 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA 160 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999999999987544333333344566788999999965 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.++..+++.|.+++++ ++|||++||+++++.. ||++++|++|+++..++.+++.+
T Consensus 161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999765 8999999999999866 99999999999999988776643
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=368.29 Aligned_cols=214 Identities=25% Similarity=0.382 Sum_probs=187.7
Q ss_pred ccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec-----
Q psy6612 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI----- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~----- 83 (291)
.+-+.+|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++
T Consensus 7 ~~~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 7 VMKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred hcCCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 344668999999999998899999999999999999999999999999999999987 3 699999999865
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~ 151 (291)
+.+||+||++.+++. |++||+.+....++. ...+..+++.++++.+++. . .++++.+||||||||++
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred CHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 249999999998885 999999875443332 2344455677889998884 2 47889999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. ||++++|++|+++.+|+++++..
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 243 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFS 243 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999999999999999999999975 7899999999999865 99999999999999999887654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=403.71 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=191.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
..+|+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +.+
T Consensus 3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred CceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 4578999999999988999999999999999999999999999999999999999999999999875 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcc----ccCC---ChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGY----MFDM---TDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~----~~~~---~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
||+||++.+++.+|+.||+.+... .++. +..+.++++.++++.+|+.. .++++++|||||||||+|||||+.
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~ 162 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLML 162 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence 999999999999999999976432 1121 22344567888999999975 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 163 DAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 999999999999999999999999999998779999999999999976 99999999999999988877643
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=385.58 Aligned_cols=203 Identities=28% Similarity=0.443 Sum_probs=182.5
Q ss_pred eEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEEEc
Q psy6612 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGYMP 90 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~v~ 90 (291)
|++++|+++.+ ++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+|
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 78999988764 89999999999999999999999999999999999999999999764 3499999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+|+.+|++||+.+..... ...+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||
T Consensus 82 q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPt 159 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPL 159 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999999998754322 22334556888999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+++..++++++...
T Consensus 160 s~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 160 AALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999865 8999999999999976 999999999999999998877543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-51 Score=363.43 Aligned_cols=209 Identities=31% Similarity=0.472 Sum_probs=187.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++++++++|++. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|+||+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4679999999865 89999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+.....+....+..+.+.++++.+++.. .++++.+||||||||++|||||+.+|++++|||||+|
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 999999999999987543333334445567788999999965 6889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+++.+++.|++++.+ |.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 160 LDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999754 8999999999999875 99999999999999988776644
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=354.08 Aligned_cols=213 Identities=25% Similarity=0.436 Sum_probs=198.7
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------- 83 (291)
+.|+++++.|+||...+|++||++..+|+++.|||.+||||||+||||+-+..|+.|.|.++|+.+
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 467889999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHH-hccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
.++|+|||+++|+..||+.||+.- +....+.++.+..++++.++.++|+.+ .+.+|..||||||||++||
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 248999999999999999999864 233457788888999999999999976 6899999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.|.+++. +.+++++++|.|-++|+|++++..
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf~n 242 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGN 242 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHhcC
Confidence 99999999999999999999999999999999999999999999999999987 899999999999999999988654
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=369.50 Aligned_cols=210 Identities=24% Similarity=0.403 Sum_probs=185.5
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4578999999999988999999999999999999999999999999999999974 899999999775
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++. |+.||+.+....++. +.....+++.++++.+++.. .++++.+||||||||++||
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 175 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence 248999999998875 999999875433322 23334566788999999842 4678999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999975 6899999999999966 9999999999999999877664
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=357.72 Aligned_cols=192 Identities=34% Similarity=0.505 Sum_probs=173.4
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEE
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGY 88 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~ 88 (291)
++|+++.|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 36899999988999999999999999999999999999999999999999999999999873 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
++|++.+++.+|++||+.+.....+.......+++.++++.++++. .++++.+||+|||||++|||||+.+|++|||||
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999987544334444455667889999999965 688999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
||+|||+.++..+.+.|+++.++|.|||++||+++.+..||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999986789999999999977669999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=369.73 Aligned_cols=219 Identities=26% Similarity=0.339 Sum_probs=187.2
Q ss_pred CCcccccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec
Q psy6612 9 IDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI 83 (291)
Q Consensus 9 ~~~~~~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~ 83 (291)
++|..-..+++|+++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++
T Consensus 11 ~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 90 (268)
T PRK14248 11 IAPFPEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNI 90 (268)
T ss_pred cccCCCCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEc
Confidence 33433334568999999999998899999999999999999999999999999999999864 7899999999765
Q ss_pred -----------CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhH
Q psy6612 84 -----------SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQ 146 (291)
Q Consensus 84 -----------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGq 146 (291)
+.++|+||++.+++. |++||+.+.....+. ......+.+.++++.+++. . .++++.+|||||
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 91 LDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQ 169 (268)
T ss_pred ccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHH
Confidence 249999999998885 999999865332222 1223345567788888873 2 478899999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
|||++|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 248 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTE 248 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999965 6899999999999865 9999999999999999877
Q ss_pred HHHH
Q psy6612 226 DIVE 229 (291)
Q Consensus 226 ~~~~ 229 (291)
++..
T Consensus 249 ~~~~ 252 (268)
T PRK14248 249 QIFT 252 (268)
T ss_pred HHHh
Confidence 6644
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=401.50 Aligned_cols=211 Identities=26% Similarity=0.384 Sum_probs=191.5
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------C
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------S 84 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~ 84 (291)
++..+|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|+++ .
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 7 TAPPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred CCCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 345689999999999998999999999999999999999999999999999999999999999999875 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
.+||+||++.+++.+|++||+.+.... ....++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ll 162 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPK----RQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRIL 162 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhccccc----chHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 499999999999999999999875321 1234567888999999975 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..|+++++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 163 ILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 9999999999999999999999998779999999999999976 99999999999999998877643
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=369.81 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=185.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC--------ccEEEECCEec-------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD--------AGTIKLSFRQI------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~--------~G~I~~~g~~~------- 83 (291)
||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 578999999999999999999999999999999999999999999999999998 99999999875
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++.+|++||+.+..... +....+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 23899999987666689999998743211 1111233456788999999975 6889999999999999999999
Q ss_pred h---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 157 L---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 157 ~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPA 240 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9 599999999999999999999999999999765 8999999999999965 9999999999999999887
Q ss_pred HHHH
Q psy6612 226 DIVE 229 (291)
Q Consensus 226 ~~~~ 229 (291)
++.+
T Consensus 241 ~~~~ 244 (272)
T PRK13547 241 DVLT 244 (272)
T ss_pred HHcC
Confidence 7644
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=364.55 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=184.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~-------- 83 (291)
.++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred CceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 357899999999998899999999999999999999999999999999999997 4799999999864
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|++|++.+++ .|++||+.+.....+.. .+...+++.++++.+++. . .++++.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 24999999999886 69999998654333322 223345677889999983 2 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999864 6899999999999866 9999999999999998877654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=363.57 Aligned_cols=210 Identities=27% Similarity=0.384 Sum_probs=183.9
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC---CCC--CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR---NTL--DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl---~~p--~~G~I~~~g~~~--------- 83 (291)
.+|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+ .+| ++|+|.++|+++
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 478899999999999999999999999999999999999999999999997 454 589999999875
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ .|+.||+.+.....+.. .....+.+.++++.+++.. .++++.+||||||||++||||
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 160 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA 160 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence 24999999999887 59999998754333322 2334566788899999842 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~ 234 (250)
T PRK14245 161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999999999996 47999999999999965 99999999999999998887654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-50 Score=363.97 Aligned_cols=210 Identities=27% Similarity=0.348 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CC---CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TL---DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p---~~G~I~~~g~~~--------- 83 (291)
.+|++++++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+. .| ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4789999999999889999999999999999999999999999999999985 46 599999999865
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ +|++||+.+.....+.. .....+++.++++.+++. . .++++.+||||||||++||||
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 162 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV 162 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 24999999999887 79999998754333322 223456677888998873 2 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++++.. ||++++|++|+++..++.+++.+
T Consensus 163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 236 (252)
T PRK14239 163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFM 236 (252)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999965 6899999999999865 99999999999999998877654
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=371.82 Aligned_cols=212 Identities=26% Similarity=0.406 Sum_probs=189.8
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-C----CccEEEECCEec-------
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-L----DAGTIKLSFRQI------- 83 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p----~~G~I~~~g~~~------- 83 (291)
|+++|++..|.. ..+++||||++++||++||+|+|||||||+.++|+|+++ | .+|+|.|+|+++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 678999999953 579999999999999999999999999999999999997 4 579999999865
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC-C-ChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD-M-TDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQr 149 (291)
++|+|+||+| +|.|-+|+.+-+.-....+. . .+++.++++.++|+.+|++. .+.+|++|||||+||
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQR 161 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQR 161 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHH
Confidence 4699999997 67888999988865544432 3 45667889999999999974 389999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|.||.||+.+|++||+||||++||...+.+++++|+++++ .|.|+|+||||+..+.. ||||+||..|++++.|+.+++
T Consensus 162 V~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i 241 (316)
T COG0444 162 VMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEI 241 (316)
T ss_pred HHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999985 69999999999999976 999999999999999999888
Q ss_pred HHHH
Q psy6612 228 VESL 231 (291)
Q Consensus 228 ~~~~ 231 (291)
+.+.
T Consensus 242 ~~~P 245 (316)
T COG0444 242 FKNP 245 (316)
T ss_pred hcCC
Confidence 7653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=367.26 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=185.1
Q ss_pred ccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-----
Q psy6612 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI----- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~----- 83 (291)
|.-..+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 8 ~~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 8 ISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 344568999999999998999999999999999999999999999999999999987 6899999999864
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++.+++. |++||+.+.....+.. ....+++.++++.+++. . .++++.+||||||||++|
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 259999999998884 9999998764433332 22345667788888763 2 578899999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC-----------CEEEE
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD-----------DQYIG 220 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~-----------G~i~~ 220 (291)
||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++||+++++.. ||++++|++ |++++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~ 244 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVE 244 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEE
Confidence 9999999999999999999999999999999999964 6899999999999976 999999996 67889
Q ss_pred EechhHHHH
Q psy6612 221 RLVHHDIVE 229 (291)
Q Consensus 221 ~~~~~~~~~ 229 (291)
.|+++++.+
T Consensus 245 ~~~~~~~~~ 253 (269)
T PRK14259 245 FNETKKIFN 253 (269)
T ss_pred eCCHHHHHh
Confidence 998877754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=362.77 Aligned_cols=208 Identities=29% Similarity=0.427 Sum_probs=183.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------- 83 (291)
+|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 57899999999988999999999999999999999999999999999999763 699999999865
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+....++. +.....+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 24899999999887 8999999875433332 2334456778888888873 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999964 7899999999999866 9999999999999998877654
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=362.23 Aligned_cols=210 Identities=27% Similarity=0.376 Sum_probs=183.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~---------- 83 (291)
+|+++|++++|+++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 688999999999899999999999999999999999999999999999999874 89999999775
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++.+|+.||+.+.....+. ......+.+.++++.+++. . .++++++||||||||++|||||
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 2499999999999999999999865332222 2233445666677777652 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14272 164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFT 236 (252)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999974 6999999999999976 99999999999999998877644
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=360.81 Aligned_cols=206 Identities=22% Similarity=0.322 Sum_probs=178.9
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+.+.+|+++|+++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..
T Consensus 3 ~~~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 3 ENSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred CCCceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 445678999999999988999999999999999999999999999999999999999999999999865 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|+||++.+++. |++||+.+....+... ...+++.++++.+++. . .++++.+|||||+||++|||||+.+|+++
T Consensus 83 i~~~~q~~~l~~~-tv~enl~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (225)
T PRK10247 83 VSYCAQTPTLFGD-TVYDNLIFPWQIRNQQ--PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVL 159 (225)
T ss_pred cEEEecccccccc-cHHHHHHhHHhhcCCC--hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999998874 9999998753333221 1234677899999995 3 58999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEe-CCEEEEEec
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMR-DDQYIGRLV 223 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~-~G~i~~~~~ 223 (291)
||||||+|||+.++..+.++|+++++ .|.|||++||+++++..||++++|+ ++..+.+|.
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~ 221 (225)
T PRK10247 160 LLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEAR 221 (225)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhh
Confidence 99999999999999999999999975 4899999999999997799999995 443444443
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=363.36 Aligned_cols=212 Identities=25% Similarity=0.415 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-----c---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----I--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~--------- 83 (291)
++|+++|++++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 47889999999988889999999999999999999999999999999999999999999999865 3
Q ss_pred ----CeEEEEcCCCC--CCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELA--LHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ----~~ig~v~q~~~--l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|++|++. +++.+|+.+|+.+...... .........+.++++.+++. . .++++.+|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 24899999974 4556789999865321111 11123346778899999995 3 68899999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..++++|+++++ .|.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~ 238 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLD 238 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999875 48999999999999975 99999999999999988776643
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=361.49 Aligned_cols=209 Identities=32% Similarity=0.433 Sum_probs=184.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------- 83 (291)
||+++|+++.|+++++++++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 68899999999988999999999999999999999999999999999999874 899999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ +|++||+.+.....+. .....++.+.++++.+++.. .++++.+||||||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 25999999999887 7999999875433322 22334556778889888842 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14262 162 AVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVE 234 (250)
T ss_pred hCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999999975 6899999999999865 99999999999999998876654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=356.14 Aligned_cols=199 Identities=31% Similarity=0.448 Sum_probs=179.3
Q ss_pred EEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------
Q psy6612 20 VAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------ 83 (291)
Q Consensus 20 l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------ 83 (291)
|+++++++.|++ +.+|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 678999999975 7899999999999999999999999999999999999999999999999875
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+.++|+||++.+++.+|+.||+.+....+. ....+..+++.++++.+++.. .++++.+||+|||||++|||||+.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 259999999999998999999987654332 334445567889999999965 688999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
++||||||+|||+.++..+.+.|+++++ .++|||++||+++....||++++|++|++
T Consensus 162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999975 58999999999986656999999999975
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=348.08 Aligned_cols=207 Identities=30% Similarity=0.417 Sum_probs=193.9
Q ss_pred eEEEEeEEEEECCEe--eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCC
Q psy6612 19 SVAVTSAYKKIGNHV--VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQE 92 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~--~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~ 92 (291)
++.+++++.+|++++ +|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|+++ ..-|.|||+
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 567889999999887 99999999999999999999999999999999999999999999999988 357999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.++|++|+.||+.|+.++.++++.+..+.+.+++..+|+.. .++++.+|||||||||.|||||+.+|++|+||||+++
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgA 162 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGA 162 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhh
Confidence 999999999999999999999999888899999999999976 5899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechh
Q psy6612 172 LDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHH 225 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~ 225 (291)
||.-+++++.++|.++- +.|+.++++|||++++.. ++++++|+- |+|+...+++
T Consensus 163 lDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 163 LDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999999875 569999999999999976 999999976 6888876654
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-50 Score=360.35 Aligned_cols=211 Identities=27% Similarity=0.419 Sum_probs=184.7
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~-------- 83 (291)
..+|++++++++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++
T Consensus 2 ~~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 2 DPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred CceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 45788999999999889999999999999999999999999999999999999987 69999999764
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++. |+.||+.+....++.. .+...+.+.++++.+++. . .++++.+||||||||++|||
T Consensus 82 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 249999999998875 9999998754333322 223345667778888863 2 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..+.++|+++. +++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 235 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFS 235 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999999999999999999985 57999999999999976 89999999999999998877644
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=361.65 Aligned_cols=208 Identities=19% Similarity=0.278 Sum_probs=182.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEECCEec-------CeEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQI-------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~-------~~ig 87 (291)
+|+++|++++| ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++ +.++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 57889999999 57899999999999999999999999999999999999999 999999999875 3599
Q ss_pred EEcCCCC--CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 88 YMPQELA--LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 88 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
|+||++. +.+.+|+.+|+.+.....+... ..+++.++++.+++.. .++++.+||||||||++|||||+.+|+
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 160 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPA--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP 160 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCCh--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence 9999985 4456799998865433233222 2356788999999964 478899999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 9999999999999999999999999975 48999999999999965 99999999999999998877654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-50 Score=406.00 Aligned_cols=216 Identities=19% Similarity=0.295 Sum_probs=191.4
Q ss_pred ccccceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 14 IEVKHSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
+..++||+++|+++.|+ ..++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+
T Consensus 7 ~~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~ 86 (623)
T PRK10261 7 LDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQ 86 (623)
T ss_pred CCCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccc
Confidence 44566899999999996 35799999999999999999999999999999999999999999999988521
Q ss_pred -----------------CeEEEEcCCC--CCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC----CCCCc
Q psy6612 84 -----------------SDIGYMPQEL--ALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP----AKKIV 139 (291)
Q Consensus 84 -----------------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~----~~~~~ 139 (291)
+.||||||++ .+++.+||.||+.+..... +.+..+.++++.++++.+|+.. .++++
T Consensus 87 ~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 166 (623)
T PRK10261 87 VIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYP 166 (623)
T ss_pred ccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCC
Confidence 2599999998 6888899999998865432 4455556678899999999953 57899
Q ss_pred CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
.+|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++ |+|||+||||++++.. |||+++|++|+
T Consensus 167 ~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~ 246 (623)
T PRK10261 167 HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGE 246 (623)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCe
Confidence 999999999999999999999999999999999999999999999999754 8999999999999976 99999999999
Q ss_pred EEEEechhHHHH
Q psy6612 218 YIGRLVHHDIVE 229 (291)
Q Consensus 218 i~~~~~~~~~~~ 229 (291)
++..|+++++..
T Consensus 247 i~~~g~~~~~~~ 258 (623)
T PRK10261 247 AVETGSVEQIFH 258 (623)
T ss_pred ecccCCHHHhhc
Confidence 999888877643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=404.19 Aligned_cols=212 Identities=20% Similarity=0.279 Sum_probs=190.1
Q ss_pred ceEEEEeEEEEEC-----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---
Q psy6612 18 HSVAVTSAYKKIG-----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~-----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--- 83 (291)
.+|+++|+++.|+ ...+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 5899999999996 25799999999999999999999999999999999999999999999999864
Q ss_pred ---------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHH
Q psy6612 84 ---------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 ---------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQr 149 (291)
++|+|+||++ .+++.+|+.+|+.+....++. ...+.++++.++++.+|+. . .++++++||||||||
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 2599999997 588999999999875433332 2344556788999999995 3 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++++.. ||++++|++|++++.|+++++
T Consensus 472 v~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i 551 (623)
T PRK10261 472 ICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAV 551 (623)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999754 8999999999999976 999999999999999998887
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
..
T Consensus 552 ~~ 553 (623)
T PRK10261 552 FE 553 (623)
T ss_pred hc
Confidence 54
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-50 Score=359.91 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=183.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 368899999999988999999999999999999999999999999999999986 599999999765
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+++ .|+.||+.+.....+.. .....+++.++++.+++. . .++++.+|||||||||+|||||
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 160 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHH
Confidence 24999999999887 79999998753333322 233445677788888873 2 4688999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 161 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999975 5899999999999876 9999999999999988876653
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-50 Score=364.59 Aligned_cols=211 Identities=21% Similarity=0.358 Sum_probs=181.5
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYM 89 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v 89 (291)
..+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ ..++|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred hceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 45789999999995 57899999999999999999999999999999999999999999999999875 259999
Q ss_pred cCCCCCC--CCCCHHHHHHHhcc----ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 90 PQELALH--GELSIRETFRYYGY----MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 90 ~q~~~l~--~~ltv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
||++.+. ...++.+|+.+... .........++++.++++.+++.. .++++.+||||||||++|||||+.+|++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l 163 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV 163 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 9998653 23478888754311 111122334456778899999975 6889999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||||||+|||+.++..+.++|++++++|+|||++||+++++.. ||+++++ +|+++..++++++.
T Consensus 164 lllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 164 ILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 99999999999999999999999998778999999999999865 9999777 89999999887764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=341.25 Aligned_cols=204 Identities=25% Similarity=0.382 Sum_probs=188.3
Q ss_pred ceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------- 83 (291)
+.|++++++|..+ ...+|++|+|.|++||-++|+||+|||||||+-+++|+..|++|+|.+.|+++
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 4677788888775 36799999999999999999999999999999999999999999999999886
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+++|||||.+.+.|+||..||+..+..+.+-+..+....+.++++.+|+.. .+.+|.+|||||||||+|||||+..
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~ 164 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR 164 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence 469999999999999999999999888877555666778889999999976 6889999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
|++|+.||||-+||..+-.++.+++-.+. +.|+|.++||||...+.+|+|++-|.+|+++++
T Consensus 165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999997 569999999999999999999999999998753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=359.07 Aligned_cols=211 Identities=28% Similarity=0.382 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~-------- 83 (291)
+.||+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 557899999999998899999999999999999999999999999999999975 4 599999999865
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++ .|+++|+.+.....+.. .+...+++.++++.+++. . .++++.+||||||||++|||
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 25999999999888 69999998754333322 222344566778888763 2 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..+++.+...
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 236 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999975 5899999999999965 99999999999999888776543
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=362.34 Aligned_cols=212 Identities=26% Similarity=0.341 Sum_probs=186.0
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
-..+|+++|++++|+++++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3457899999999998999999999999999999999999999999999999986 5899999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++ .|++||+.+.....+. .......++.++++.+++. . .++++.+||||||||++||
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 24999999998887 5999999875433222 2334456677889999884 2 5788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.++|+++. ++.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 251 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFT 251 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999996 47899999999999865 99999999999999998877643
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=358.90 Aligned_cols=195 Identities=30% Similarity=0.514 Sum_probs=173.9
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc-CCCCCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP-QELALHG 97 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~-q~~~l~~ 97 (291)
++|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 566778899999999999999999999999999999999999999999999999864 3599998 5577888
Q ss_pred CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH
Q psy6612 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~ 176 (291)
.+|+.||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.+
T Consensus 109 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 188 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVA 188 (236)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH
Confidence 8999999987654444444455567788999999975 688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 177 SQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 177 ~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
++.+.++|++++++ +.|||++||+++++.. ||++++|.+|+++..
T Consensus 189 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 189 QENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999754 7899999999999866 999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=359.30 Aligned_cols=212 Identities=29% Similarity=0.414 Sum_probs=184.6
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--C---CccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--L---DAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p---~~G~I~~~g~~~------- 83 (291)
+..+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|+++
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 3557899999999999999999999999999999999999999999999999976 3 489999999774
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++. |++||+.+....++. .....++.+.++++.+++. . .++++.+||||||||++||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 161 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA 161 (253)
T ss_pred hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence 248999999998885 999999876443332 2233445677788888873 1 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 237 (253)
T PRK14261 162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFE 237 (253)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHh
Confidence 999999999999999999999999999999999975 5899999999999965 99999999999999988877653
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=365.99 Aligned_cols=212 Identities=27% Similarity=0.371 Sum_probs=185.1
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
.+.+|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4557999999999988889999999999999999999999999999999999864 4999999999764
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+++. |+.||+.+....++.. ....++++.++++.+++. . .++++.+||||||||++||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 194 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA 194 (286)
T ss_pred HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence 259999999998875 9999998754333322 233445677888888873 2 4788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~ 270 (286)
T PRK14275 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFT 270 (286)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999875 5899999999999966 99999999999999998877643
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-50 Score=392.75 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=186.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
++|+++|++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 378899999999988999999999999999999999999999999999999999999999999875 2599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcc--ccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGY--MFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~--~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
|+||++.+++.+|+.||+.+... .++ ....+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll 162 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999999987532 112 233445567889999999975 68899999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|+++..+.
T Consensus 163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 9999999999999999999999998778999999999999976 99999999999987654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=358.61 Aligned_cols=207 Identities=25% Similarity=0.442 Sum_probs=181.0
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-----------C
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI-----------S 84 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~-----------~ 84 (291)
+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++ +
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 57999999998899999999999999999999999999999999999986 4799999999764 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCC--ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDM--TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral~ 157 (291)
.++|+||++.+++. |++||+.+....++. .....++.+.++++.+++.. .++++.+||||||||++|||||+
T Consensus 87 ~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 87 KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 48999999998886 999999875333222 22334456778899999852 46788999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.+|++|||||||+|||+.++..+.+.|++++ +++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 166 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFK 237 (251)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999986 48999999999999976 99999999999999888766543
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=362.77 Aligned_cols=211 Identities=25% Similarity=0.334 Sum_probs=186.0
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
+.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4478999999999999999999999999999999999999999999999999985 799999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+|+ +|+++|+.+...... .+..+...++.++++.+++.. .++.+.+||||||||++||||
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 24999999999888 799999986532222 233444556678889999852 467899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.+++.+.+.|+++++ ++|||++||+++++.. ||++++|++|+++..++++++.+
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 251 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999975 4899999999999866 99999999999999999887754
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=365.01 Aligned_cols=210 Identities=26% Similarity=0.422 Sum_probs=184.2
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
-+++|++++++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 3567999999999998899999999999999999999999999999999999987 6899999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----CCCCCcCcCChhHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----PAKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++. |+.||+.+.....+.+. ...+++.++++.+++. ..++++.+||||||||++|||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 248999999988885 99999987543333332 3455788899999884 247889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEE-EEeCCEEEEEechhHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIG-LMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~-~l~~G~i~~~~~~~~~~ 228 (291)
||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. |||++ +|++|+++..++++++.
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999975 4799999999999976 99975 67999999988877654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=359.54 Aligned_cols=211 Identities=25% Similarity=0.436 Sum_probs=185.8
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-----ccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-----AGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-----~G~I~~~g~~~--------- 83 (291)
++|+++|++++|++..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 4789999999998888999999999999999999999999999999999999985 89999999764
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ +|+.||+.+.....+. +..+..+++.++++.+++.. .++++.+||||||||++||||
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 24999999999888 8999999875333332 23334456778899998732 478899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeC-----CEEEEEechhHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRD-----DQYIGRLVHHDIV 228 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~-----G~i~~~~~~~~~~ 228 (291)
|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||+++++.. ||++++|++ |+++..++++++.
T Consensus 165 l~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 165 LAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHH
Confidence 9999999999999999999999999999999874 58999999999999976 999999999 9999999988775
Q ss_pred H
Q psy6612 229 E 229 (291)
Q Consensus 229 ~ 229 (291)
+
T Consensus 245 ~ 245 (261)
T PRK14258 245 N 245 (261)
T ss_pred h
Confidence 4
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=356.54 Aligned_cols=206 Identities=27% Similarity=0.442 Sum_probs=176.3
Q ss_pred EEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|+++|++++|++. ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999765 899999999999999999999999999999999999999999999999875 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+||++.+++ .|++||+.+..... ......+ .+.++++.+ ++.. .++++.+||+|||||++|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 157 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP 157 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999998887 69999998753321 1222111 234455555 5543 57789999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++||||||+|||+.++..+.+.|++++ ++.|||++||+++++..||++++|++|+++..++++++..
T Consensus 158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (234)
T cd03251 158 PILILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225 (234)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHH
Confidence 9999999999999999999999999996 4899999999999997799999999999998888766543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=359.23 Aligned_cols=206 Identities=25% Similarity=0.423 Sum_probs=175.0
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999963 6799999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+||++.+++ .|+.||+.+... ......... .+.++++.+ ++.. .++++.+|||||||||+|||||+.+|
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 157 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP 157 (237)
T ss_pred EcCCchhcc-chHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999998875 699999976432 111211111 123344554 4433 46789999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.+.|++++ +|+|||++||+++++..||++++|++|+++..++++++..
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 158 RILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999997 4899999999999996699999999999999998776654
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=392.78 Aligned_cols=209 Identities=28% Similarity=0.419 Sum_probs=186.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec----------CeE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~----------~~i 86 (291)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++ ..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 47899999999988999999999999999999999999999999999999987 799999999875 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcccc--C--CChHHHHHHHHHHHHHcCCCC-C-CCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMF--D--MTDDQIETRSKEILKLLELPP-A-KKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~--~--~~~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
||+||++.+++.+|+.||+.+..... . ...+..++++.++++.+++.. . ++++++|||||||||+|||||+.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 99999999999999999998754321 1 223344567888999999965 3 5789999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++|||||||+|||+.++..+.+.|++++++|.|||++|||++++.. ||++++|++|+++..+++++.
T Consensus 161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999998778999999999999976 999999999999988876654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=361.65 Aligned_cols=211 Identities=27% Similarity=0.390 Sum_probs=185.4
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
-..+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3557999999999998899999999999999999999999999999999999987 4899999999864
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC-----CCCCCcCcCChhHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP-----PAKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-----~~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|+||++.+|+. |+.||+.+.....+. .....++++.++++.+++. ..++++.+||||||||++||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 180 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA 180 (272)
T ss_pred HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence 259999999998886 999999875433332 2223345677888888884 24788999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|||+.+|+++||||||+|||+.++..+++.|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHh
Confidence 999999999999999999999999999999999975 6899999999999865 9999999999999988877654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=361.87 Aligned_cols=210 Identities=27% Similarity=0.398 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEC---------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 19 SVAVTSAYKKIG---------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 19 ~l~~~~l~~~~~---------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
+|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 688999999997 47899999999999999999999999999999999999999999999999864
Q ss_pred ------CeEEEEcCCC--CCCCCCCHHHHHHHhcc-ccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 ------SDIGYMPQEL--ALHGELSIRETFRYYGY-MFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ------~~ig~v~q~~--~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++ .+++..|+.+|+.+... ..+........++.++++.+++. . .++++.+||||||||++|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 2599999997 46677899999875432 12333344455788999999996 3 588999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 163 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhcc
Confidence 99999999999999999999999999999999999754 8999999999999976 9999999999999999887754
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=359.25 Aligned_cols=210 Identities=26% Similarity=0.369 Sum_probs=184.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~--------- 83 (291)
.+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 368899999999988999999999999999999999999999999999999985 489999999865
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
..++|+||++.+|+ +|++||+.+.....+ .+.....+.+.++++.+++. . .++++.+||||||||++||||
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara 164 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA 164 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 24999999999887 899999987543322 23334455677888988873 2 578899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe-----CCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR-----DDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~-----~G~i~~~~~~~~~~~ 229 (291)
|+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++++.. ||++++|+ +|+++..++++++.+
T Consensus 165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~ 243 (259)
T PRK14260 165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFS 243 (259)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhc
Confidence 9999999999999999999999999999999975 5899999999999976 99999998 599999999887643
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=349.61 Aligned_cols=192 Identities=26% Similarity=0.331 Sum_probs=172.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
|+++++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 57899999999999999999999999999999999999999999999999999999999999875 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|+.||+.+....++. ...+++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999999999999876543321 22456788999999965 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhh-CeEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGA-HNIGLM 213 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~-d~i~~l 213 (291)
+|||+.++..++++|++++++|.|||++||+++++..| +|++.+
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999987789999999999999775 566655
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=362.79 Aligned_cols=211 Identities=24% Similarity=0.366 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~-------- 83 (291)
..+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 347899999999998889999999999999999999999999999999999987 6999999999765
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCC----CC-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLEL----PP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l----~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+.++|+||++.+++. |++||+.+.....+.. .....+.+.++++.+++ .. .++++.+||||||||++|||
T Consensus 102 ~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 249999999998874 9999998754333322 22234456677777754 22 47889999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999975 6899999999999865 99999999999999998776643
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=356.17 Aligned_cols=200 Identities=25% Similarity=0.380 Sum_probs=175.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL 99 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l 99 (291)
+.+++++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++. +..+...+++.+
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS---LLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch---hhcccccCCCCC
Confidence 66788999999999999999999999999999999999999999999999999999999998642 222234566778
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
|+.||+.+....++....+.++++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||+|||+.+++
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~ 179 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQE 179 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 99999987654444344444567788899999976 68899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
.+++.|++++++|+|||++||+++++.. ||++++|++|+++..|
T Consensus 180 ~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 180 KCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999998668999999999999965 9999999999987643
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=356.12 Aligned_cols=209 Identities=24% Similarity=0.301 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecC----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQIS---------- 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~---------- 84 (291)
+.+|++++++++|+++.+|+++||++++||++||+||||||||||+++|+|+ ++|++|+|+++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 4578999999999988999999999999999999999999999999999998 5799999999998751
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcccc----C---CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMF----D---MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAV 154 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~----~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAr 154 (291)
.++|++|++.+++.+|+.+|+.+..... . ....+..+++.++++.+++. . .++++. .||||||||++|||
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~ 164 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ 164 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence 3789999999999999999987643211 1 11122345677889999996 3 577787 59999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechh
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~ 225 (291)
||+.+|++|||||||+|||+.++..++++|++++++|.|||++||+++++.. ||++++|++|+++..++++
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 9999999999999999999999999999999998778999999999999964 8999999999999998876
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=388.12 Aligned_cols=215 Identities=25% Similarity=0.409 Sum_probs=193.6
Q ss_pred ccceEEEEeEEEEECC-----------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-
Q psy6612 16 VKHSVAVTSAYKKIGN-----------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~-----------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~- 83 (291)
...+++++|++|.|.. ..+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999972 4789999999999999999999999999999999999999999999999762
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHH
Q psy6612 84 ----------SDIGYMPQEL--ALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELPP--AKKIVGALSGGQQR 148 (291)
Q Consensus 84 ----------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQ 148 (291)
+++-++||+| +|.|.+||.+++......+.. ...+.++++.++++.++|.. .+++|++|||||||
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ 436 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ 436 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence 3688999987 689999999999876654432 23455667999999999975 69999999999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++|||||+.+|++|++|||||+||+..+.++.++|++++++ |.|.||||||+..++. ||||++|++|+|++.|+.+.
T Consensus 437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~ 516 (539)
T COG1123 437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEK 516 (539)
T ss_pred HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHH
Confidence 999999999999999999999999999999999999999854 9999999999999987 99999999999999998877
Q ss_pred HHHH
Q psy6612 227 IVES 230 (291)
Q Consensus 227 ~~~~ 230 (291)
+++.
T Consensus 517 v~~~ 520 (539)
T COG1123 517 VFEN 520 (539)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=391.31 Aligned_cols=206 Identities=27% Similarity=0.398 Sum_probs=185.3
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEEcCC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYMPQE 92 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v~q~ 92 (291)
+|++++|+++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.++|+||+
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 81 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQE 81 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecc
Confidence 6899999989999999999999999999999999999999999999999999999999875 359999999
Q ss_pred CCCCCCCCHHHHHHHhcc-ccC--CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 93 LALHGELSIRETFRYYGY-MFD--MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~-~~~--~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+.+++.+|++||+.+... ..+ ....+..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 82 LNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred cccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 999999999999986432 112 123344567888999999975 6889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|+++..+++++..
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999998778999999999999976 9999999999999999877653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=392.95 Aligned_cols=210 Identities=24% Similarity=0.412 Sum_probs=186.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEEC------------------
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLS------------------ 79 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~------------------ 79 (291)
|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 46899999999889999999999999999999999999999999999997 7999999996
Q ss_pred -----CEec-------------------CeEEEEcCC-CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC
Q psy6612 80 -----FRQI-------------------SDIGYMPQE-LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP 134 (291)
Q Consensus 80 -----g~~~-------------------~~ig~v~q~-~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 134 (291)
|.++ +.++|+||+ +.+++.+|++||+.+.....+.+..+.++++.++++.++++.
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 160 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH 160 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence 2111 248999998 678888999999987544444444555678889999999975
Q ss_pred -CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEE
Q psy6612 135 -AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIG 211 (291)
Q Consensus 135 -~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~ 211 (291)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ .|+|||+||||++.+.. ||+++
T Consensus 161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~ 240 (520)
T TIGR03269 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 (520)
T ss_pred hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEE
Confidence 6889999999999999999999999999999999999999999999999999964 58999999999999976 99999
Q ss_pred EEeCCEEEEEechhHHHH
Q psy6612 212 LMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 212 ~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|+++..|+++++..
T Consensus 241 ~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 241 WLENGEIKEEGTPDEVVA 258 (520)
T ss_pred EEeCCEEeeecCHHHHHH
Confidence 999999998888877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-50 Score=356.51 Aligned_cols=191 Identities=30% Similarity=0.411 Sum_probs=169.9
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----eEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----DIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+|++|++.+++.+|+.||+.+...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998763 36899999999999999999987532
Q ss_pred --ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 111 --MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 111 --~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.......+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 160 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQI 160 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 122333444566888999999975 68899999999999999999999999999999999999999999999999999
Q ss_pred HhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 188 ALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 188 ~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
+++ |+|||++||+++++.. ||++++|++|+++..++..
T Consensus 161 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 161 WEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 754 8999999999999866 9999999999998776543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=353.07 Aligned_cols=204 Identities=31% Similarity=0.444 Sum_probs=177.3
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec------Ce
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~------~~ 85 (291)
.+.+++++++|.+ +++++|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++ +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4568899999964 589999999999999999999999999999999999999 9999999999875 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHH-HHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKE-ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~-~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
++|+||++.+++.+|+.||+.+...... ........++.+ +++.+++.. .++.+.+|||||+||++|||||+.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999987543221 111222234455 788888865 57889999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH-hHHhh-hCeEEEEeCCEEEEEe
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI-EEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~-~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
++|||||||+|||+.++..+.+.|++++++|.|+|++||++ +++.. ||++++|++|++++.|
T Consensus 163 ~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 163 KVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999986789999999998 57755 9999999999998653
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=393.13 Aligned_cols=212 Identities=20% Similarity=0.306 Sum_probs=186.9
Q ss_pred ceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec-----
Q psy6612 18 HSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI----- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~----- 83 (291)
+||++++++++|++ +++|+++||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 47899999999963 6899999999999999999999999999999999999986 799999999864
Q ss_pred --------CeEEEEcCCCC--CCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHHH
Q psy6612 84 --------SDIGYMPQELA--LHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQR 148 (291)
Q Consensus 84 --------~~ig~v~q~~~--l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqkQ 148 (291)
+.+||+||++. +++.+|+.+|+.+.... .+.+..+..+++.++++.+++.. .++++.+|||||||
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 25999999975 66778999998754322 23444555678889999999964 37899999999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
||+|||||+++|++|||||||++||+.++..++++|++++++ |+|||+||||++++.. |||+++|++|+++..+++++
T Consensus 164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 243 (529)
T PRK15134 164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243 (529)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999754 8999999999999976 99999999999999998877
Q ss_pred HHH
Q psy6612 227 IVE 229 (291)
Q Consensus 227 ~~~ 229 (291)
+..
T Consensus 244 ~~~ 246 (529)
T PRK15134 244 LFS 246 (529)
T ss_pred Hhh
Confidence 643
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-49 Score=351.62 Aligned_cols=195 Identities=27% Similarity=0.348 Sum_probs=172.1
Q ss_pred eEEEEeEEEEECC-------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEC--CE--ec----
Q psy6612 19 SVAVTSAYKKIGN-------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS--FR--QI---- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~-------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~--g~--~~---- 83 (291)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5789999999962 579999999999999999999999999999999999999999999998 42 32
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 84 ---------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 ---------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++.+++.+|+.||+.+.....+.......+++.++++.+++.. .++++.+||||||||++|
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l 160 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI 160 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence 259999999999999999999987433333333444567788999999964 478999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEE
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLM 213 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l 213 (291)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++++.. ||+++.+
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999998778999999999999965 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-50 Score=345.12 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=198.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++..++.+|+++||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++ +.-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 67899999999999999999999999999999999999999999999999999999999999886 357899
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChH--HHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc------CC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDD--QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH------NP 160 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~------~p 160 (291)
||+..+-..+||+|.+.++..-++...+ +..+.++++|...++.. ..+...+|||||||||.+||.|++ ++
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 9999886678999999987554433222 55566888999999976 678889999999999999999987 44
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
++|+||||||+||+.++..++++.++++.+|..|+.|-||++.+.. |||+++|++|++++.|+++++... +.++..|
T Consensus 161 r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~--Etl~~vy 238 (259)
T COG4559 161 RWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD--ETLERVY 238 (259)
T ss_pred ceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCH--HHHHHHh
Confidence 5899999999999999999999999999889999999999999965 999999999999999999998776 6788888
Q ss_pred hcC
Q psy6612 240 RHG 242 (291)
Q Consensus 240 ~~~ 242 (291)
+..
T Consensus 239 g~~ 241 (259)
T COG4559 239 GAD 241 (259)
T ss_pred CCc
Confidence 654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=358.01 Aligned_cols=213 Identities=27% Similarity=0.423 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC------Eec-------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF------RQI------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g------~~~------- 83 (291)
.++|.+++++++|+++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4578899999999999999999999999999999999999999999999999999997776665 332
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAra 155 (291)
..++|+||++.+++.+|+.||+.+.....+. ...+.++++.++++.+++. . .++++..||+|||||++||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 3599999999999999999999876432222 2334456788899999985 2 468899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+.+|+++||||||+|||+.++..+.+.|.++++ +.|||++||+++++.. ||++++|++|+++..++.+++...
T Consensus 168 l~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~ 242 (257)
T PRK14246 168 LALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTS 242 (257)
T ss_pred HHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999964 6899999999999965 999999999999999988776543
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=357.70 Aligned_cols=202 Identities=26% Similarity=0.403 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
.+|+++++++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+||++.+++
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~--~~i~~v~q~~~~~~ 80 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK--LRIGYVPQKLYLDT 80 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc--cCEEEecccccccc
Confidence 4788999999999889999999999999999999999999999999999999999999999884 46999999988876
Q ss_pred CC--CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 98 EL--SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 98 ~l--tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
.+ |+.+++.+.. +.. .+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+|||+
T Consensus 81 ~l~~~~~~~~~~~~---~~~----~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 153 (251)
T PRK09544 81 TLPLTVNRFLRLRP---GTK----KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153 (251)
T ss_pred ccChhHHHHHhccc---ccc----HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 53 7777765321 111 245678899999976 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 175 ILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
.++..+++.|++++++ |.|||++||+++++.. ||++++|++ +++..++++++.+
T Consensus 154 ~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 154 NGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999999999765 8999999999999965 999999965 7888888877654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-49 Score=349.69 Aligned_cols=196 Identities=21% Similarity=0.285 Sum_probs=176.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC------eEEEEc
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------DIGYMP 90 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------~ig~v~ 90 (291)
+.+|+++|++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 45788999999999889999999999999999999999999999999999999999999999998752 499999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|++||+.+....++. ...+.+.++++.+++.. .++++.+||+|||||++||||++.+|++|||||||
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPY 165 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999989999999875433322 12345678899999965 68899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
++||+.+++.+.+.|++++++|.|||++|||++++.. ||++++++.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 166 ANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999998778999999999999966 999999863
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=391.40 Aligned_cols=212 Identities=25% Similarity=0.377 Sum_probs=185.6
Q ss_pred cceEEEEeEEEEEC-----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEEC-CEe---c----
Q psy6612 17 KHSVAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS-FRQ---I---- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~-g~~---~---- 83 (291)
..||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 45899999999994 2579999999999999999999999999999999999999999999995 521 1
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------CCCCcCcCChhHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~LSgGqkQr 149 (291)
+.+||+||++.+++.+|++||+.+.... ..+....++++.++++.+++.. .++++.+||||||||
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr 435 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR 435 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence 3499999999999999999999864322 2233334567888999999963 478999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|+|||||+.+|++|||||||+|||+.+++.+++.|++++++ |.|||++|||++++.. ||++++|++|+++..++++++
T Consensus 436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 515 (520)
T TIGR03269 436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEI 515 (520)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999754 8999999999999976 999999999999998887765
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
.+
T Consensus 516 ~~ 517 (520)
T TIGR03269 516 VE 517 (520)
T ss_pred Hh
Confidence 44
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=358.69 Aligned_cols=209 Identities=25% Similarity=0.389 Sum_probs=181.8
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~--------- 83 (291)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 36889999999998899999999999999999999999999999999999986 4899999999765
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|++|++.+++. |+.||+.+.....+.. ....+++.++++.+++. . .++++.+||||||||++|||||
T Consensus 89 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HhhhEEEEccCCccccc-cHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 249999999988874 9999998754332222 22344566777877773 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe---------CCEEEEEechhH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR---------DDQYIGRLVHHD 226 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~---------~G~i~~~~~~~~ 226 (291)
+.+|++|||||||+|||+.++..++++|.++++ +.|||++||+++++.. ||++++|+ +|++++.+++++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~ 245 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEK 245 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHH
Confidence 999999999999999999999999999999975 5899999999999966 99999998 799999999887
Q ss_pred HHH
Q psy6612 227 IVE 229 (291)
Q Consensus 227 ~~~ 229 (291)
+.+
T Consensus 246 ~~~ 248 (264)
T PRK14243 246 IFN 248 (264)
T ss_pred HHh
Confidence 754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=383.58 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=193.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
..+++++++|+|++.+||++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++|+.. ..|+
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 467899999999999999999999999999999999999999999999999999999999999976 3499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhcccc----CCChHHHHHHHHHHHHHcCCC-CCCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMF----DMTDDQIETRSKEILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.|+|+.+++|+|||.||+.++.... -+..+...+++.++|+.+++. ..+.++++||.||||.|+|||||..++++
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl 166 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV 166 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999997654322 245677888999999999984 37899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech-hHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH-HDI 227 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~-~~~ 227 (291)
||||||||+|+....+.+++++++++++|.+||++||.++++.. ||||.+|+||+.++..+. .++
T Consensus 167 lIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~ 233 (500)
T COG1129 167 LILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAET 233 (500)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCC
Confidence 99999999999999999999999999999999999999999976 999999999999988873 443
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=358.99 Aligned_cols=208 Identities=27% Similarity=0.402 Sum_probs=181.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---------- 83 (291)
+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++
T Consensus 20 ~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 20 VFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred eEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 78999999999988999999999999999999999999999999999999863 699999999764
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+.++|+||++.+++. |+.||+.+.....+.. ....+.+.++++.+++. . .++++.+|||||||||+|||||+
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~ 177 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIA 177 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 259999999998875 9999998753322221 12234566778888763 2 47889999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe---------CCEEEEEechhHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR---------DDQYIGRLVHHDI 227 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~---------~G~i~~~~~~~~~ 227 (291)
.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++.. ||++++|+ +|+++..++++++
T Consensus 178 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~ 256 (274)
T PRK14265 178 MKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQM 256 (274)
T ss_pred hCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 99999999999999999999999999999975 6899999999999966 99999998 8999999998877
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
..
T Consensus 257 ~~ 258 (274)
T PRK14265 257 FG 258 (274)
T ss_pred Hh
Confidence 54
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=350.77 Aligned_cols=194 Identities=26% Similarity=0.397 Sum_probs=168.7
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|++++++++|++ +.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|.++ +.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 678999999975 5799999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCC-----------CcCcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK-----------IVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~-----------~~~~LSgGqkQrv~iAral 156 (291)
++|++.+++ .|+.||+.+.... .. .+.+.++++.+++.. .++ .+.+||||||||++|||||
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~--~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al 155 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPL--AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARAL 155 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCC--CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999998887 6999999764221 11 234556777777743 333 3469999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+.+|++|||||||+|||+.++..+++.|++++++ +|||++||+++++..||++++|++|+++..
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 156 LNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999754 899999999998866999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=383.81 Aligned_cols=215 Identities=25% Similarity=0.367 Sum_probs=193.0
Q ss_pred cceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC----ccEEEECCEec-----
Q psy6612 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD----AGTIKLSFRQI----- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~----~G~I~~~g~~~----- 83 (291)
.++|+++|+++.|.. ..+++||||++++||++||+|+|||||||+.++|+|++++. +|+|.++|+++
T Consensus 3 ~~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred CceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 348899999999953 36999999999999999999999999999999999999887 89999999876
Q ss_pred --------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC-CChHHHHHHHHHHHHHcCCCC-C--CCCcCcCChhHHHH
Q psy6612 84 --------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD-MTDDQIETRSKEILKLLELPP-A--KKIVGALSGGQQRR 149 (291)
Q Consensus 84 --------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~-~--~~~~~~LSgGqkQr 149 (291)
++|+|+||+| .|.|-+|+.+-+.-....++ .+.++.++++.++|+.+++++ . +++|++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 4699999997 46666899888875544443 447788889999999999975 3 35999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
|.||+||+.+|++||+||||++||+..+.+++++|++++ +.|+++|+||||++.+.. |||+++|.+|++++.|+.+++
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i 242 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998 569999999999999977 999999999999999999998
Q ss_pred HHHH
Q psy6612 228 VESL 231 (291)
Q Consensus 228 ~~~~ 231 (291)
+++.
T Consensus 243 ~~~p 246 (539)
T COG1123 243 LSNP 246 (539)
T ss_pred Hhcc
Confidence 7754
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-51 Score=347.20 Aligned_cols=222 Identities=25% Similarity=0.417 Sum_probs=203.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
|++++|++|+|+++.+++++|++|++|.+++++|||||||||||.++++|+++++|+|+++|.++ ++++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999987 358899
Q ss_pred cCCCCCCCCCCHHHHHHHhcccc--CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 90 PQELALHGELSIRETFRYYGYMF--DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
-|+..+...+||+|-+.|+..-| +...++.+..+.++++.++|+. .+++..+||||||||..||..++++.++++||
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 99999989999999998864333 4455677889999999999987 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHhcC
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHG 242 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~ 242 (291)
||.++||..+..++++.|++++++ |+||++|-||++++.. +|+|+.|++|+++.+|+++++... +.+++.|...
T Consensus 161 EPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~--~~L~eiydm~ 236 (252)
T COG4604 161 EPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP--EILSEIYDMD 236 (252)
T ss_pred CcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH--HHHHHHhcCC
Confidence 999999999999999999999854 9999999999999976 999999999999999999998875 5677777554
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=350.52 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=173.2
Q ss_pred eEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.|+++|++++|++ +.+++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3678999999975 5799999999999999999999999999999999999999999999999775 34999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+||++.+++. |++||+.+..... ......+ .+.++++.+ ++.. .++++.+|||||||||+|||||+.+|
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999988876 9999998653211 1111111 122233333 3433 45678999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|||||||+|||+.+++.+++.|++++ +++|||++||+++++..||++++|++|+++..++.+++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 225 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 9999999999999999999999999986 589999999999998779999999999999887765543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=351.57 Aligned_cols=196 Identities=27% Similarity=0.349 Sum_probs=172.8
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEECCEec-------CeEEEEcCCCC--CCCCCC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQI-------SDIGYMPQELA--LHGELS 100 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~-------~~ig~v~q~~~--l~~~lt 100 (291)
+++|+||+|++|++++|+||||||||||+|+|+|+++| ++|+|+++|+++ +.++|++|++. +++.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899999999875 36999999985 556789
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCC---C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELP---P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~ 176 (291)
+.+|+.+.....+.......+++.++++.++++ . .++++.+|||||||||+|||||+.+|++|||||||+|||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 999987643333322334456788999999996 3 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 177 SQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 177 ~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+..+.+.|++++++ |+|||++||+++++.. ||++++|++|+++..++++++..
T Consensus 161 ~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 215 (230)
T TIGR02770 161 QARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFY 215 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999764 8999999999999975 99999999999999998877643
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=391.43 Aligned_cols=212 Identities=21% Similarity=0.320 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEEC-----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--
Q psy6612 17 KHSVAVTSAYKKIG-----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-- 83 (291)
+.+|+++|+++.|+ ++++|+++||+|++||++||+||||||||||+|+|+|+++ ++|+|+++|+++
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 34789999999995 3679999999999999999999999999999999999984 899999999764
Q ss_pred ----------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC--CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHH
Q psy6612 84 ----------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD--MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQ 147 (291)
Q Consensus 84 ----------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqk 147 (291)
+.+||+||++ .+++.+|+.||+.+....+. .+..+.++++.++++.+++. . .++++.+||||||
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~ 431 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR 431 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence 2489999997 48888999999987533221 23344456788999999996 3 6899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 148 Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
|||+|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||++++.. ||++++|++|++++.++++
T Consensus 432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 511 (529)
T PRK15134 432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCE 511 (529)
T ss_pred HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999864 8999999999999976 9999999999999999887
Q ss_pred HHHH
Q psy6612 226 DIVE 229 (291)
Q Consensus 226 ~~~~ 229 (291)
++.+
T Consensus 512 ~~~~ 515 (529)
T PRK15134 512 RVFA 515 (529)
T ss_pred HHhc
Confidence 7643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-49 Score=353.51 Aligned_cols=206 Identities=30% Similarity=0.471 Sum_probs=173.5
Q ss_pred EEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 20 VAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999964 4699999999999999999999999999999999999999999999999775 3499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH-----HHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-----SKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
|+||++.+++ .|++||+.+..... ..+..... +.++++.+ ++.. .++++.+|||||||||+|||||+.+
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999998886 59999998643221 11211111 12223333 3433 4677899999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..+++.|++++ +|+|||++||+++++..||++++|++|+++..++.+++..
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999997 7899999999999997799999999999999888766543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=351.09 Aligned_cols=208 Identities=22% Similarity=0.328 Sum_probs=178.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec----------CeE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~----------~~i 86 (291)
||+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 578999999999889999999999999999999999999999999999995 69999999999764 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhcc-c--c-C---CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGY-M--F-D---MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAVSL 156 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~-~--~-~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAral 156 (291)
+|++|++.+++.+|..+++.+... . . . .......+.+.++++.+++. . .++++. +||||||||++|||||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 999999998888787766543211 0 1 0 11122345677889999995 3 466665 7999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~ 226 (291)
+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++|||++++.. ||++++|++|+++..++++.
T Consensus 161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 232 (248)
T PRK09580 161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTL 232 (248)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHH
Confidence 99999999999999999999999999999998778999999999999965 79999999999999888763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=350.88 Aligned_cols=208 Identities=29% Similarity=0.440 Sum_probs=183.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec----------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI---------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~---------- 83 (291)
+|+++++++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5789999999998899999999999999999999999999999999999864 4899999999875
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChHHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDDQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~iAral 156 (291)
+.++|+||++.+|+. |+.||+.+....++. ..+..++++.++++.+++. . .++++.+||+|||||++|||||
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 249999999998885 999999865332222 2234556788889998873 2 4788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++++|++|+++..++++++.
T Consensus 162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999964 7899999999999976 9999999999999999887764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=353.58 Aligned_cols=210 Identities=25% Similarity=0.357 Sum_probs=183.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
...+.++.++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|+++|+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 3456788999999999999999999999999999999999999999999999986 799999999865
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-----CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.++ .+|+.||+.+........ .+..+++.++++.+++.. .++++.+|||||+||++||||
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara 163 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA 163 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence 2489999999888 489999998764433222 234467888999999842 357789999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe--------CCEEEEEechhH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR--------DDQYIGRLVHHD 226 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~--------~G~i~~~~~~~~ 226 (291)
|+.+|++|||||||+|||+.++..+++.|++++ ++.|||++||+++++.. ||++++|+ +|+++..++.++
T Consensus 164 l~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~ 242 (261)
T PRK14263 164 IATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQ 242 (261)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHH
Confidence 999999999999999999999999999999996 47899999999999865 99999996 899999999887
Q ss_pred HHH
Q psy6612 227 IVE 229 (291)
Q Consensus 227 ~~~ 229 (291)
+.+
T Consensus 243 ~~~ 245 (261)
T PRK14263 243 IFQ 245 (261)
T ss_pred HHh
Confidence 654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-49 Score=343.98 Aligned_cols=188 Identities=25% Similarity=0.338 Sum_probs=170.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|+++++++.|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|++||+.+..... ..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 154 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154 (201)
T ss_pred ccccCCCcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 999998899999998753211 2356778899999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLM 213 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l 213 (291)
|||+.++..+.+.|++++++|.|+|++||+...... |++++.+
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 155 ALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999988778999999999888755 8998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-49 Score=353.93 Aligned_cols=203 Identities=21% Similarity=0.341 Sum_probs=177.7
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcC
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQ 91 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q 91 (291)
+++|+++. .+|+|+||++++||+++|+||||||||||+++|+|++++ +|+|.++|+++ +.++|+||
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecc
Confidence 45677764 389999999999999999999999999999999999864 99999999875 24899999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc-------CCCEE
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH-------NPKLL 163 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~-------~p~ll 163 (291)
++.+++.+|+++|+.+.... .....+..+++.++++.+++.. .++++.+||||||||++|||||+. +|++|
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll 155 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL 155 (248)
T ss_pred cCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence 99888889999999875322 2223344567888999999965 688999999999999999999998 67999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..+.++|++++++|.|||++||+++++.. ||++++|++|+++..++.+++..
T Consensus 156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 9999999999999999999999998778999999999999866 99999999999999988776643
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=343.82 Aligned_cols=189 Identities=24% Similarity=0.345 Sum_probs=170.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
||+++|++++|+++++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|+++|+++ +.++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 57899999999988999999999999999999999999999999999999999999999999865 3599999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++.+|+.||+.+..... .. ...+.++++.+++.. .++++.+||+||+||++||||++.+|++|||||||
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~ 155 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFS---PG--AVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPL 155 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcC---cc--hHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9999988899999998753211 11 246778999999865 57889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL 212 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~ 212 (291)
+|||+.++..+.+.|++++++|.|||++||+.+.+..||.-++
T Consensus 156 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 156 VALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred cccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999997778999999999999988887554
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-49 Score=389.07 Aligned_cols=211 Identities=22% Similarity=0.389 Sum_probs=185.9
Q ss_pred cceEEEEeEEEEEC---CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEec---------
Q psy6612 17 KHSVAVTSAYKKIG---NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQI--------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~---~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~--------- 83 (291)
..+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 34799999999993 4679999999999999999999999999999999999998 5999999999865
Q ss_pred -CeEEEEcCCC---CCCCCCCHHHHHHHhcc--ccC---CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 84 -SDIGYMPQEL---ALHGELSIRETFRYYGY--MFD---MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 -~~ig~v~q~~---~l~~~ltv~enl~~~~~--~~~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
..++|+||++ .+++++|+.||+.+... ... .+....++++.++++.+++. . .++++++|||||||||+|
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l 416 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL 416 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence 2499999996 47888999999976421 111 12333456788999999995 4 689999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
||||+.+|++|||||||+|||+.+++.++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNL 492 (506)
T ss_pred HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccC
Confidence 999999999999999999999999999999999998779999999999999976 999999999999999887765
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=343.56 Aligned_cols=192 Identities=29% Similarity=0.386 Sum_probs=172.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQE 92 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~ 92 (291)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 68899999999988999999999999999999999999999999999999999999999999874 258999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+++.+|+.||+.+....++.. .+.+.++++.+++.. .++++++||||||||++|||||+.+|++|||||||+|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGE----ELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCc----HHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 88888899999998754333221 235778999999965 5789999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
||+.++..+++.|++++++|.|||++||+++++.. |+++-+..
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999988779999999999999977 88887743
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-48 Score=348.61 Aligned_cols=206 Identities=26% Similarity=0.428 Sum_probs=173.6
Q ss_pred EEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 20 VAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+++++++++|+ ++.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++ +.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 46899999995 57799999999999999999999999999999999999999999999999875 249999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
||++.+++ .|+.||+.+.... ........ .+.+.++.+ ++.. .++++.+||||||||++|||||+.+|+
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCChhhc-chHHHHHhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99998886 6999999875321 12222111 122233333 3332 456788999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+.+.|.++++ |+|||++||+++++..||++++|++|+++..++.+++..
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~ 224 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA 224 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999976 899999999999997799999999999998888766543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=370.60 Aligned_cols=207 Identities=29% Similarity=0.423 Sum_probs=193.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
.+.+++++++|.|++..|+++|||+|++|||+||+|+||||||||+++|.|+++|++|+|.++|+++ ..|
T Consensus 2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 3567899999999999999999999999999999999999999999999999999999999999986 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc---cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
|+|+|++.|++.+||.||+.++..- .....++.++++.++.+.+|++- .++++++||-||||||.|.+||.++|++
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i 161 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL 161 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE
Confidence 9999999999999999999886532 23456778889999999999975 7899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
|||||||+-|-|...+++++.+++++++|+|||++||-++++.. |||+.+|.+|++++...
T Consensus 162 LILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 162 LILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999977 99999999999988776
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=329.91 Aligned_cols=211 Identities=31% Similarity=0.466 Sum_probs=196.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------------- 83 (291)
.|+++++++.||...+|.||+|+.++||.+.++||+|||||||+|.++-+..|.+|+..+.|...
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999977543
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHH-hccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIGYMPQELALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
+++|+|||+..++|.+||.||+.- +.+..++++++.+.++.++++.+.+.+ +|+.|-.|||||+|||+|||||+++|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 469999999999999999999853 456678889999999999999999976 799999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++||||++|||+-..++.++|+++.+.|.|-+++||..+.++. |.++++|++|+|++.|+.+.+.+
T Consensus 162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 999999999999999999999999999889999999999999977 99999999999999999876543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=426.25 Aligned_cols=214 Identities=26% Similarity=0.488 Sum_probs=198.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeE
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~i 86 (291)
+.+|+++|++|.|++ +.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +.|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 458999999999985 6899999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||+||++.+++.+|++||+.+.+..++.+.++.+++++++++.+++.. .++++++||||||||++||+||+.+|++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLL 2094 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLL 2094 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999999998777777666666677889999999975 7899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+||||.+++.+++.|++++++|+|||++||++++++. |||+++|++|+++..|+++++.+.
T Consensus 2095 DEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2095 DEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 99999999999999999999998779999999999999977 999999999999999998876543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=351.62 Aligned_cols=210 Identities=29% Similarity=0.394 Sum_probs=182.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec--------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~-------- 83 (291)
..+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 5578999999999988999999999999999999999999999999999999875 799999988542
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh-HHHHHHHHHHHHHcCCC----C-CCCCcCcCChhHHHHHHH
Q psy6612 84 -----SDIGYMPQELALHGELSIRETFRYYGYMFDMTD-DQIETRSKEILKLLELP----P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 -----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~----~-~~~~~~~LSgGqkQrv~i 152 (291)
+.++|+||++.+++. |++||+.+.....+... ...++++.++++.+++. . .++++.+||||||||++|
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 248999999999986 99999986543333222 22345677788888763 2 468899999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||+++++.. ||++++|++|+++..++.+++.
T Consensus 173 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIF 248 (265)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999999975 6899999999999965 9999999999999999887664
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=362.56 Aligned_cols=214 Identities=28% Similarity=0.346 Sum_probs=186.1
Q ss_pred ccccceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec---
Q psy6612 14 IEVKHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI--- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~--- 83 (291)
+....+|+++|++++|. .+++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++
T Consensus 75 ~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 45566899999999994 4679999999999999999999999999999999999986 5799999999986
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH-HHHHHHHHHHHcCCC-----CCCCCcCcCChhHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-IETRSKEILKLLELP-----PAKKIVGALSGGQQRR 149 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~-~~~~~~~~l~~~~l~-----~~~~~~~~LSgGqkQr 149 (291)
+.++|+||++.+|+ .|++||+.|.....+...++ ..+.+.++++.+++. ..++++.+||||||||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqR 233 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQR 233 (329)
T ss_pred ccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHH
Confidence 25999999999886 69999998754332333222 233467788888873 1468899999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 234 l~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 234 LCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999999875 6999999999999977 9999999999999999998876
Q ss_pred H
Q psy6612 229 E 229 (291)
Q Consensus 229 ~ 229 (291)
.
T Consensus 313 ~ 313 (329)
T PRK14257 313 I 313 (329)
T ss_pred c
Confidence 4
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=385.33 Aligned_cols=203 Identities=20% Similarity=0.288 Sum_probs=180.5
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.+||+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 68999999999988899999999999999999999999999999999999999999999988654 238999
Q ss_pred cCCCCC--C-C-----CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 90 PQELAL--H-G-----ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 90 ~q~~~l--~-~-----~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
||++.+ + + .+|+.+|+.+. ...++++.++++.++++. .++++++|||||||||+|||||+.+|
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 154 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEP 154 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 998653 1 1 46888876431 123456788999999965 68999999999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++|||||||+|||+.++..+.++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 155 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 155 DLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999998778999999999999976 99999999999999988776543
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=349.38 Aligned_cols=196 Identities=21% Similarity=0.349 Sum_probs=174.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|++.+++.+|+.+|+.+....
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~----~~~~~~~~~~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE----VSVIAISAGLSGQLTGIENIEFKMLC 112 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE----EeEEecccCCCCCCcHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999985 57888888888889999999765333
Q ss_pred cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
.+...++..+.+.++++.+++.. .++++.+||+||+||++|||||+.+|++|||||||+|||+.++..+++.|.+++++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~ 192 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQ 192 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHC
Confidence 34444555556777888889865 68899999999999999999999999999999999999999999999999999877
Q ss_pred CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 191 GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 191 g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
|+|||++||+++++.. ||++++|++|+++..++.+++....
T Consensus 193 g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 234 (264)
T PRK13546 193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234 (264)
T ss_pred CCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHh
Confidence 8999999999999976 9999999999999999988776654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=385.55 Aligned_cols=206 Identities=21% Similarity=0.390 Sum_probs=181.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
+.+|+++|+++.|+ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++ +.+
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 34799999998764 389999999999999999999999999999999999999999999999764 259
Q ss_pred EEEcCC---CCCCCCCCHHHHHHHhcccc--------CC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHH
Q psy6612 87 GYMPQE---LALHGELSIRETFRYYGYMF--------DM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 87 g~v~q~---~~l~~~ltv~enl~~~~~~~--------~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~i 152 (291)
||+||+ +.+++++|++||+.+....+ +. .....++++.++++.+++. . .++++++|||||||||+|
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l 420 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI 420 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence 999998 46888999999997642210 11 1223345678899999996 4 689999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
||||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|+++..++.
T Consensus 421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999999999999999999999999998779999999999999976 999999999999987765
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=332.47 Aligned_cols=164 Identities=41% Similarity=0.776 Sum_probs=154.6
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
+++++++++|++.++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 4689999999888899999999999999999999999999999999999999999999999875 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
++.+++.+|+.||+. ||||||||++|||||+.+|++|||||||++
T Consensus 81 ~~~~~~~~tv~~~~~-----------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 81 EPSLYENLTVRENLK-----------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred CCccccCCcHHHHhh-----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 999999899999973 999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||+.++..+.+.|++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 126 LDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999998778999999999999975 999999999863
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-49 Score=348.55 Aligned_cols=199 Identities=23% Similarity=0.353 Sum_probs=172.0
Q ss_pred ccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 16 VKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
...++++++++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 3567899999999974 4799999999999999999999999999999999999999999999999765
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHH-----HHHHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-----ETRSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
+.++|+||++.+++ .|++||+.+..... ..... ...+.++++.+ |+.. .++++.+||||||||++||||
T Consensus 88 ~~i~~~~q~~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 35999999998886 59999997643211 11111 11245678888 6754 578899999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++++..||++++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999875 6899999999999977999999999864
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=383.77 Aligned_cols=209 Identities=21% Similarity=0.334 Sum_probs=183.6
Q ss_pred ceEEEEeEEEEE---CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec----------
Q psy6612 18 HSVAVTSAYKKI---GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI---------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~---~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~---------- 83 (291)
.+|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 379999999999 346799999999999999999999999999999999999995 899999999765
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHhcc--cc---CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHH
Q psy6612 84 SDIGYMPQEL---ALHGELSIRETFRYYGY--MF---DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ~~ig~v~q~~---~l~~~ltv~enl~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iA 153 (291)
+++||+||++ .+++++|+++|+.+... .. .......++++.++++.+++. . .++++++|||||||||+||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 2489999996 58899999999976421 11 122233456788899999995 3 5899999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|||+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|+++..++..+
T Consensus 416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999998779999999999999976 99999999999998776544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=356.72 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=183.4
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-----CCccEEEECCEec-------
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-----LDAGTIKLSFRQI------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-----p~~G~I~~~g~~~------- 83 (291)
.+.+|.++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 3568999999999998999999999999999999999999999999999999986 6899999999765
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhcccc------------CCC-hHHHHHHHHHHHHHcCCC----C-CCCCcCc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMF------------DMT-DDQIETRSKEILKLLELP----P-AKKIVGA 141 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~------------~~~-~~~~~~~~~~~l~~~~l~----~-~~~~~~~ 141 (291)
+.++|+||++.+++. |++||+.+..... +.. .....+.+.++++.+++. . .++++.+
T Consensus 122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 200 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG 200 (305)
T ss_pred HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence 249999999988874 9999998653211 111 122345678889998873 2 4788999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeE-EEEeCCEEE
Q psy6612 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNI-GLMRDDQYI 219 (291)
Q Consensus 142 LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i-~~l~~G~i~ 219 (291)
||||||||++|||||+++|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++.. ||++ ++|++|+++
T Consensus 201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 999999999999999999999999999999999999999999999976 4899999999999966 9996 577999999
Q ss_pred EEechhHHHH
Q psy6612 220 GRLVHHDIVE 229 (291)
Q Consensus 220 ~~~~~~~~~~ 229 (291)
..++++++..
T Consensus 280 ~~g~~~~~~~ 289 (305)
T PRK14264 280 EYDDTDKIFE 289 (305)
T ss_pred EeCCHHHHHh
Confidence 9998877654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=337.80 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=165.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEcC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMPQ 91 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~q 91 (291)
|+++++++.|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999875 36999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|+.||+.+.....+ .+ ++++.++++.+++.. .++++++||||||||++||||++.+|+++||||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~--~~--~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHG--GA--QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcC--Cc--HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9999888999999987543332 11 345778899999975 688999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
|||+.++..+++.|.+++++|.|||++||+...+ .|++++
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~ 196 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEAREL 196 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEe
Confidence 9999999999999999977789999999998543 245554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=332.45 Aligned_cols=165 Identities=38% Similarity=0.640 Sum_probs=154.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig~ 88 (291)
|++++++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 4689999999988999999999999999999999999999999999999999999999999764 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
++|++.+++.+|+.||+.+. ||||||||++|||||+.+|+++|||||
T Consensus 81 ~~q~~~~~~~~t~~~~l~~~---------------------------------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 81 VFQDFALFPHLTVLENIALG---------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred EecCCccCCCCCHHHheeec---------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 99999999889999997542 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+|||+.++..++++|++++++ |.|+|++||+++++.. ||++++|++|+
T Consensus 128 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999876 7999999999999975 99999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=335.84 Aligned_cols=175 Identities=33% Similarity=0.522 Sum_probs=159.8
Q ss_pred eEEEEeEEEEECC------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec------C
Q psy6612 19 SVAVTSAYKKIGN------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~------~ 84 (291)
.|++++++++|++ +++++++||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++ +
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4789999999975 68999999999999999999999999999999999999 99999999999875 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
.++|+||++.+++.+|++||+.+.... .+||||||||++|||||+.+|+++|
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~----------------------------~~LS~G~~qrv~laral~~~p~ill 134 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL----------------------------RGLSGGERKRVSIALELVSNPSLLF 134 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh----------------------------ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 599999999999999999999753210 0899999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh-HHhh-hCeEEEEeCCEEEEE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~-~~~~-~d~i~~l~~G~i~~~ 221 (291)
|||||+|||+.+++.+.+.|++++++|+|+|++||+++ ++.. ||++++|++|+++..
T Consensus 135 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 135 LDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999867899999999996 5654 999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-48 Score=342.79 Aligned_cols=196 Identities=23% Similarity=0.345 Sum_probs=168.8
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 3678999999964 4799999999999999999999999999999999999999999999999875 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAra 155 (291)
|+||++.+++ .|++||+.+... ... +++.++++.+++.. .++++.+||+|||||++||||
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~lara 153 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGE---YSD----EELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARA 153 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCC---CCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHH
Confidence 9999999876 599999864321 111 23344455444421 246889999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||+++++..||++++|++|+++..++
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 154 LLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999864 689999999999997799999999999987654
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=372.32 Aligned_cols=210 Identities=25% Similarity=0.394 Sum_probs=185.0
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~ 93 (291)
+.|++++|+++.|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+. ++.+.+
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----~i~~~~ 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----LIAISS 94 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee----eEEecc
Confidence 457899999999977 4799999999999999999999999999999999999999999999999752 233445
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+++.+|++||+.+.....+....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 66777899999987544334444555567788999999975 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+.++..+++.|++++++|.|||++|||++++.. ||++++|++|+++..++++++...
T Consensus 175 D~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 175 DQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 9999999999999998778999999999999976 999999999999999988877654
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=331.16 Aligned_cols=162 Identities=30% Similarity=0.499 Sum_probs=151.4
Q ss_pred EEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
++++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 468999999975 5699999999999999999999999999999999999999999999999875 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
++|++.+++. |++||+ ||||||||++|||||+.+|++||||||
T Consensus 81 ~~q~~~~~~~-tv~~~l------------------------------------LS~G~~qrv~la~al~~~p~~lllDEP 123 (173)
T cd03246 81 LPQDDELFSG-SIAENI------------------------------------LSGGQRQRLGLARALYGNPRILVLDEP 123 (173)
T ss_pred ECCCCccccC-cHHHHC------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 9999988875 999986 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQY 218 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i 218 (291)
|+|||+.++..+++.|++++++|+|||++||+++++..||++++|++|++
T Consensus 124 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 124 NSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999998778999999999998866999999999864
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=336.91 Aligned_cols=191 Identities=23% Similarity=0.326 Sum_probs=167.5
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..+++++++++|++ .++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 46889999999975 4799999999999999999999999999999999999999999999999875 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+|+||++.+++. |++||+.+... ... +.+.++++ .++++.+|||||+||++|||||+.+|+++|||
T Consensus 85 ~~v~q~~~~~~~-tv~~~l~~~~~---~~~----~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~llllD 150 (207)
T cd03369 85 TIIPQDPTLFSG-TIRSNLDPFDE---YSD----EEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLD 150 (207)
T ss_pred EEEecCCcccCc-cHHHHhcccCC---CCH----HHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 999999988874 99999965321 111 12333333 35678999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
|||+|||+.++..+++.|+++. +|.|+|++||+++++..||++++|++|+++..++
T Consensus 151 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999999985 4899999999999996799999999999987664
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=336.78 Aligned_cols=174 Identities=28% Similarity=0.488 Sum_probs=154.1
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeEEEEcCCCC--C
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDIGYMPQELA--L 95 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~ig~v~q~~~--l 95 (291)
|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++. +
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3567899999999999999999999999999999999999999999999999764 24899999983 4
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
+ ..|++||+.+....++....+..+++.++++.+++.. .++++.+||||||||++|||||+.+|+++||||||+|||+
T Consensus 82 ~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred c-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 5 4799999987543334444445567888999999975 6889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 175 ILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
.+++.+.++|++++++|+|||++||++++
T Consensus 161 ~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 161 AGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998778999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=332.37 Aligned_cols=166 Identities=28% Similarity=0.474 Sum_probs=153.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.+|++++++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++ +.++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 468899999998 99999999999999999999999999999999999999999999999775 2599
Q ss_pred EEcCCC---CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 88 YMPQEL---ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
|+||++ .+++.+|++||+.+... ||+|||||++|||||+.+|++||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------LS~G~~qrl~la~al~~~p~lll 127 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL-------------------------------LSGGNQQKVVLARWLARDPRVLI 127 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh-------------------------------cCHHHHHHHHHHHHHccCCCEEE
Confidence 999995 57888999999876321 99999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
|||||+|||+.+++.+.+.|++++++|.|+|++||+++++.. ||++++|++|++
T Consensus 128 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 128 LDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999997678999999999999976 999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=352.99 Aligned_cols=201 Identities=25% Similarity=0.426 Sum_probs=177.8
Q ss_pred EEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|+++|++++| ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++ +.++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 6789999999 45779999999999999999999999999999999999997 799999999876 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCc-----------CChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA-----------LSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~-----------LSgGqkQrv~iAral 156 (291)
+||++.+|+. |+++|+..+.. ... +.+.++++.+|+.. .++++.. ||+|||||++|||||
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~~---~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYGK---WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred ECCCcccchh-hHHHHhhhccC---CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHH
Confidence 9999999985 99999964321 122 34567788888864 4566655 999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+..|||+++|++|+++..++++++...
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 226 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC
Confidence 99999999999999999999999999999875 47999999999999877999999999999999999988663
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-48 Score=331.01 Aligned_cols=167 Identities=30% Similarity=0.457 Sum_probs=155.4
Q ss_pred EEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 20 VAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
|++++++++|++. ++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4679999999764 799999999999999999999999999999999999999999999999865 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
+|++.+++ .|++||+ +.+||+|||||++|||||+.+|++|||||||
T Consensus 81 ~q~~~~~~-~tv~~~i---------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~ 126 (178)
T cd03247 81 NQRPYLFD-TTLRNNL---------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPT 126 (178)
T ss_pred ccCCeeec-ccHHHhh---------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99998886 6999986 7789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+|||+.+++.+++.|+++. ++.|||++||+++++..||++++|++|+++..
T Consensus 127 ~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 127 VGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIEHMDKILFLENGKIIMQ 177 (178)
T ss_pred ccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999986 58999999999999977999999999998764
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=333.16 Aligned_cols=175 Identities=29% Similarity=0.419 Sum_probs=158.9
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec-----CeEE
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI-----SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~-----~~ig 87 (291)
.|+++++++.|++ +++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++ +.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5789999999975 78999999999999999999999999999999999986 48999999999885 4699
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
|++|++.+++.+|++||+.+... ++ +||||||||++|||||+.+|++|||||
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~----------------~~------------~LSgGe~qrv~la~al~~~p~vlllDE 134 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL----------------LR------------GLSVEQRKRLTIGVELAAKPSILFLDE 134 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH----------------Hh------------cCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence 99999999999999999976321 00 899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH-Hh-hhCeEEEEeC-CEEEEE
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-AK-GAHNIGLMRD-DQYIGR 221 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~-~~-~~d~i~~l~~-G~i~~~ 221 (291)
||+|||+.++..+++.|++++++|+|||++||+++. +. .||++++|++ |+++..
T Consensus 135 P~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 135 PTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 999999999999999999998778999999999984 54 5999999999 998864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=346.73 Aligned_cols=212 Identities=19% Similarity=0.247 Sum_probs=178.0
Q ss_pred cccccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 13 IIEVKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
.+.....|++++++++|++ +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++
T Consensus 13 ~~~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~ 92 (257)
T cd03288 13 LVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHT 92 (257)
T ss_pred cccCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHH
Confidence 3445678999999999976 5799999999999999999999999999999999999999999999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++|++|++.+++. |+++|+..... ........ .+.++++.+ +++. .++++.+||+|||||++||
T Consensus 93 ~~~~i~~v~q~~~l~~~-tv~~nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~la 168 (257)
T cd03288 93 LRSRLSIILQDPILFSG-SIRFNLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLA 168 (257)
T ss_pred HhhhEEEECCCCccccc-HHHHhcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHH
Confidence 249999999988875 99999853211 11111111 122334444 4443 4567789999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.+|++|||||||+|||+.++..+++.++++. ++.|||++||+++++..||++++|++|+++..++++++..
T Consensus 169 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 169 RAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999975 4799999999999997799999999999999998877654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=333.83 Aligned_cols=175 Identities=25% Similarity=0.405 Sum_probs=159.9
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEec----------CeEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~----------~~ig 87 (291)
|+++|++++|+++++++|+||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4689999999988999999999999999999999999999999999999 479999999999875 1399
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
|+||++.+++.+++.+++ ++...+|||||+||++|||||+.+|+++||||
T Consensus 81 ~v~q~~~~~~~~~~~~~l------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDE 130 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE 130 (200)
T ss_pred EeecChhhccCccHHHHH------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999888887765 12236899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh--hhCeEEEEeCCEEEEEech
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK--GAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~--~~d~i~~l~~G~i~~~~~~ 224 (291)
||++||+.++..+++.|++++++++|||++||+++.+. .||++++|++|+++..++.
T Consensus 131 Pt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 131 PDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred CCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 99999999999999999999877899999999999996 5999999999999988743
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=416.43 Aligned_cols=212 Identities=28% Similarity=0.434 Sum_probs=195.4
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeE
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~i 86 (291)
...|+++|++|.|+ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 34799999999995 57899999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||+||++.+++.+||+||+.++.+.++.+.++.+++++++++.+|+.+ .++++++|||||||||+|||||+.+|+++||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLL 1085 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVL 1085 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999998776666655566678899999999976 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.+++.++++|++++ +|+|||++||+++++.. |||+++|++|+++..|++..+.+
T Consensus 1086 DEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1086 DEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred ECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999995 58999999999999976 99999999999999999877654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=334.23 Aligned_cols=181 Identities=23% Similarity=0.285 Sum_probs=160.0
Q ss_pred eEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec--------
Q psy6612 19 SVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI-------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~-------- 83 (291)
.+.++|++|.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 467899999995 5689999999999999999999999999999999999999 8999999999875
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+.++|++|++.+++.+|++||+.+..... .++++.+||+|||||++|||||+.+|++|
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----------------------~~~~~~~LS~Ge~qrl~laral~~~p~ll 140 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK----------------------GNEFVRGISGGERKRVSIAEALVSRASVL 140 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc----------------------cccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence 35999999999999999999997642110 46788999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEE-EccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII-TTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~-~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
||||||+|||+.+++.+++.|++++++ +.|+|+ ++|+.+++.. ||++++|++|+++..
T Consensus 141 llDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 141 CWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 999999999999999999999999754 566555 4566778765 999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=334.85 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=158.2
Q ss_pred EEEEeEEEEECCE-----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNH-----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~-----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~ 94 (291)
++++|++++|++. ++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g----~i~~~~q~~~ 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG----SIAYVSQEPW 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC----EEEEEecCch
Confidence 4689999999764 799999999999999999999999999999999999999999999998 6999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHH-----HHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRS-----KEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
+++ .|++||+.+.... ..+...+.. .+.+..+ +++. .++++.+||+|||||++|||||+.+|+++|||
T Consensus 77 l~~-~t~~enl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 77 IQN-GTIRENILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred hcc-CcHHHHhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 885 6999999874322 111111111 1112222 2222 35678899999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHH-HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 167 EPTVGLDPILSQIIWD-RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
|||++||+.+++.+++ +++++.++|.|||++||+++.+..||++++|++|+
T Consensus 153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999998 56667656899999999999997799999999884
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=376.28 Aligned_cols=206 Identities=22% Similarity=0.435 Sum_probs=181.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.+++++++++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 4788999985 379999999999999999999999999999999999999999999999775 2499
Q ss_pred EEcCCC---CCCCCCCHHHHHHHhcc--cc---C-CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 88 YMPQEL---ALHGELSIRETFRYYGY--MF---D-MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl~~~~~--~~---~-~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
|+||++ .+++.+|+.||+.+... .. + ....+.++++.++++.+++. . .++++.+|||||||||+|||||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 999996 57888999999986421 11 1 12233456788899999994 4 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||++++.. ||++++|++|+++..++++++.
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999998779999999999999976 9999999999999998887653
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=376.61 Aligned_cols=205 Identities=21% Similarity=0.346 Sum_probs=178.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ..+||++|++.+++.
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--ERLGKLRQDQFAFEE 78 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCcCCC
Confidence 578999999999889999999999999999999999999999999999999999999999874 469999999999999
Q ss_pred CCHHHHHHHhcc-c----------cCCC---------------------hHHHHHHHHHHHHHcCCCC-C-CCCcCcCCh
Q psy6612 99 LSIRETFRYYGY-M----------FDMT---------------------DDQIETRSKEILKLLELPP-A-KKIVGALSG 144 (291)
Q Consensus 99 ltv~enl~~~~~-~----------~~~~---------------------~~~~~~~~~~~l~~~~l~~-~-~~~~~~LSg 144 (291)
+|++||+.+... . +..+ ..+.++++.++++.+|+.. . ++++.+|||
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSg 158 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAP 158 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCH
Confidence 999999976321 0 0000 0122356778999999964 3 578999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEe
Q psy6612 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRL 222 (291)
Q Consensus 145 GqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~ 222 (291)
||||||+|||||+.+|++|||||||++||+.++..+.++|.+ .|.|||+||||++++.. ||++++|++|+++ ..|
T Consensus 159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g 235 (530)
T PRK15064 159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPG 235 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999864 47899999999999976 9999999999994 778
Q ss_pred chhHHH
Q psy6612 223 VHHDIV 228 (291)
Q Consensus 223 ~~~~~~ 228 (291)
+++++.
T Consensus 236 ~~~~~~ 241 (530)
T PRK15064 236 NYDEYM 241 (530)
T ss_pred CHHHHH
Confidence 877654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=378.90 Aligned_cols=206 Identities=26% Similarity=0.300 Sum_probs=180.2
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
++||+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+||+||++.+
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG--IKVGYLPQEPQL 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCC
Confidence 45899999999998 789999999999999999999999999999999999999999999999753 569999999999
Q ss_pred CCCCCHHHHHHHhccc-c-------------CCCh----------------------HHHHHHHHHHHHHcCCCCCCCCc
Q psy6612 96 HGELSIRETFRYYGYM-F-------------DMTD----------------------DQIETRSKEILKLLELPPAKKIV 139 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~-~-------------~~~~----------------------~~~~~~~~~~l~~~~l~~~~~~~ 139 (291)
++.+|+.||+.+.... + .... .+..+++.++++.+|+...++++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 161 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKV 161 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCch
Confidence 9999999999764210 0 1010 01235677889999996578899
Q ss_pred CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||++|||++++.. ||++++|++|++
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999873 499999999999976 999999999998
Q ss_pred E-EEechhHH
Q psy6612 219 I-GRLVHHDI 227 (291)
Q Consensus 219 ~-~~~~~~~~ 227 (291)
+ ..|+.+++
T Consensus 239 ~~~~g~~~~~ 248 (556)
T PRK11819 239 IPWEGNYSSW 248 (556)
T ss_pred EEecCCHHHH
Confidence 6 67776654
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=388.33 Aligned_cols=209 Identities=30% Similarity=0.478 Sum_probs=180.8
Q ss_pred ccccceEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 14 IEVKHSVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
..+...++++|++++|+.. .+|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.++
T Consensus 466 ~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 466 PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred cccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 3444568999999999865 699999999999999999999999999999999999999999999999987
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChhHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PP-AKKIV----GALSGGQQRRI 150 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQrv 150 (291)
++||||+|++.+|.. |++||+.+.... .+.++.. +++...|. +. .+.++ ..||||||||+
T Consensus 546 R~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~--~~~e~i~----~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 546 RRQVGYVLQDPFLFSG-SIRENIALGNPE--ATDEEII----EAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HhheeEEcccchhhcC-cHHHHHhcCCCC--CCHHHHH----HHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 569999999999997 999999875432 2223332 33333332 21 24444 46999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|||||+++|++||||||||+||+.+.+.+.+.|.++. .|+|+|++||++..++.||||++|++|+++.+|+++++.+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh
Confidence 99999999999999999999999999999999999997 47999999999999999999999999999999999988765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-47 Score=379.87 Aligned_cols=203 Identities=25% Similarity=0.386 Sum_probs=174.5
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
.++++|+++.| +++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++ +.|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 58999998654 5678999999999999999999999999999999999999 9999999999887 36999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral 156 (291)
|+|++.+|+. |++||+.++.. ..++++. .++++..+++ . .+..+ ..||||||||++|||||
T Consensus 428 v~Q~~~LF~~-TI~eNI~~g~~--~~~~eei----~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAl 500 (588)
T PRK11174 428 VGQNPQLPHG-TLRDNVLLGNP--DASDEQL----QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARAL 500 (588)
T ss_pred ecCCCcCCCc-CHHHHhhcCCC--CCCHHHH----HHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHH
Confidence 9999999987 99999987531 2333333 3333333331 1 23333 46999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++|++||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 501 l~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 501 LQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999999999999999999999999999986 57999999999999988999999999999999999888653
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=329.25 Aligned_cols=176 Identities=30% Similarity=0.515 Sum_probs=150.7
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCC
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELS 100 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~lt 100 (291)
++++++++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~----------~~~~ 70 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL----------SPKE 70 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC----------CHHH
Confidence 368999999988899999999999999999999999999999999999999999999999875320 0000
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
....+.+. .++++.+++.. .++++.+||+|||||++|||||+.+|+++||||||+|||+.++..
T Consensus 71 ~~~~i~~~---------------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~ 135 (180)
T cd03214 71 LARKIAYV---------------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135 (180)
T ss_pred HHHHHhHH---------------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 11111111 01678888865 578899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 180 IWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 180 i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
+.+.|.+++++ +.|+|++||+++++.. ||++++|++|+++..
T Consensus 136 ~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 136 LLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 99999999765 8999999999999965 999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=330.59 Aligned_cols=186 Identities=19% Similarity=0.313 Sum_probs=165.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----CeEEEEcCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----SDIGYMPQEL 93 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----~~ig~v~q~~ 93 (291)
||++++++++|+++.+++ +||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++ +.++|++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 578999999998776665 9999999999999999999999999999999999999999999876 3489999998
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
.+++.+|+.||+.+....++ ..+.+.++++.+++.. .++++.+||||||||++||||++.+|+++||||||+||
T Consensus 80 ~~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~L 154 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL 154 (195)
T ss_pred CCCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 88888999999987543322 1345677889999965 68899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
|+.++..+.+.|++..++|.|+|++||+++++..||.+
T Consensus 155 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 155 SKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 99999999999987766789999999999999888765
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=335.58 Aligned_cols=197 Identities=29% Similarity=0.428 Sum_probs=168.4
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCCC--CCCHHHHHHHhccc--
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALHG--ELSIRETFRYYGYM-- 111 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~~--~ltv~enl~~~~~~-- 111 (291)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|+||++.+++ .+|+.+|+.+....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 57899999999999999999999999999999999999999875 46999999987643 47999999764221
Q ss_pred --cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 112 --FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 112 --~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.........+++.++++.+++.. .++++.+||||||||++|||||+++|+++||||||+|||+.++..+.+.|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~ 160 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA 160 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11122233456788999999975 688899999999999999999999999999999999999999999999999998
Q ss_pred hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 189 ~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
++|+|+|++||+++++.. ||+++++ +|+++..++.+++.+. ..+.+.|
T Consensus 161 ~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~--~~~~~~~ 209 (223)
T TIGR03771 161 GAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP--APWMTTF 209 (223)
T ss_pred HcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh--HHHHHHh
Confidence 778999999999999866 9999999 8999999988876553 3344444
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-47 Score=375.03 Aligned_cols=206 Identities=21% Similarity=0.376 Sum_probs=180.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~ 88 (291)
.+++++++. ..+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ ..++|
T Consensus 257 ~l~~~~~~~----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 332 (501)
T PRK11288 257 RLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332 (501)
T ss_pred EEEEecccc----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEE
Confidence 578888873 2589999999999999999999999999999999999999999999999865 35899
Q ss_pred EcCCC---CCCCCCCHHHHHHHhcccc----C--CChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 89 MPQEL---ALHGELSIRETFRYYGYMF----D--MTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 89 v~q~~---~l~~~ltv~enl~~~~~~~----~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+||++ .+++.+|+.||+.+..... + ......++.+.++++.+++. . .++++.+|||||||||+|||||+
T Consensus 333 ~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 99997 4888899999987642211 1 12223345678899999994 4 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|++++.+..++..
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999999998789999999999999976 9999999999999999877654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-47 Score=373.28 Aligned_cols=208 Identities=23% Similarity=0.345 Sum_probs=180.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~i 86 (291)
+.+|+++++++ .+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ ..+
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 44799999984 269999999999999999999999999999999999999999999999865 259
Q ss_pred EEEcCCC---CCCCCCCHHHHHHHhcc--c-cCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQEL---ALHGELSIRETFRYYGY--M-FDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~---~l~~~ltv~enl~~~~~--~-~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+|+||++ .+++.+|+.+|+..... . ........++.+.++++.+++. . .++++++|||||||||+|||||+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~ 420 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA 420 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence 9999985 58888999999864211 1 1111223345678899999996 4 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.+++.++++|++++++|.|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 421 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 999999999999999999999999999998778999999999999976 99999999999999998876543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-47 Score=385.29 Aligned_cols=201 Identities=24% Similarity=0.402 Sum_probs=176.2
Q ss_pred ceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..++++|++++|+ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++ +.+
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 4689999999994 46899999999999999999999999999999999999999999999999987 369
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iAr 154 (291)
|||||++.+|+. |++||+.++.. .+++ ++.++++..++++ .+..+ ..||||||||++|||
T Consensus 530 ~~v~Q~~~lf~g-TI~eNi~~~~~---~~~e----~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 530 GVVLQNGRLMSG-SIFENIAGGAP---LTLD----EAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC---CCHH----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999999999987 99999987532 2333 3455566555531 23333 469999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|++||||||||+||+.+.+.+.+.|+++ ++|+|++||+++.+..||+|++|++|+++++|+++++.+
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA 673 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999886 579999999999998899999999999999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=382.00 Aligned_cols=208 Identities=28% Similarity=0.444 Sum_probs=184.5
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC--ccEEEECCEec-----CeEEEEcCCCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD--AGTIKLSFRQI-----SDIGYMPQELA 94 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~--~G~I~~~g~~~-----~~ig~v~q~~~ 94 (291)
.++++++|+++.+|+|+|+++++||++||+||||||||||+++|+|..+|+ +|+|.++|+++ +++|||+|++.
T Consensus 71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~ 150 (659)
T PLN03211 71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDI 150 (659)
T ss_pred cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccc
Confidence 456788898899999999999999999999999999999999999999885 89999999875 46999999999
Q ss_pred CCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC-C-----CCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 95 LHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP-A-----KKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~-----~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
+++.+||+||+.+..... ..+.++.+++++++++.+|+.+ . ++.+++||||||||++|||||+.+|++|+|
T Consensus 151 l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 151 LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 999999999998865432 2234455567889999999964 3 345678999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh-HHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~-~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+.+.|++++++|+|||++||+++ .+.. ||++++|++|+++..|+++++.+
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999999999877999999999998 4644 99999999999999999887654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=373.82 Aligned_cols=207 Identities=26% Similarity=0.324 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
+.|++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+||++|++.+
T Consensus 2 ~~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~v~Q~~~~ 79 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG--IKVGYLPQEPQL 79 (552)
T ss_pred cEEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEeccCCC
Confidence 34789999999998 788999999999999999999999999999999999999999999999763 579999999999
Q ss_pred CCCCCHHHHHHHhccc--------------cCCChHH----------------------HHHHHHHHHHHcCCCCCCCCc
Q psy6612 96 HGELSIRETFRYYGYM--------------FDMTDDQ----------------------IETRSKEILKLLELPPAKKIV 139 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~~~l~~~~~~~ 139 (291)
++++|+.||+.+.... +..+..+ ...++.++++.+++...++++
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 9999999999864211 0111111 124566778888886567899
Q ss_pred CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 140 GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
++|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++.. ||++++|++|++
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~---~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998872 599999999999976 999999999997
Q ss_pred E-EEechhHHH
Q psy6612 219 I-GRLVHHDIV 228 (291)
Q Consensus 219 ~-~~~~~~~~~ 228 (291)
+ ..|..+++.
T Consensus 237 ~~~~g~~~~~~ 247 (552)
T TIGR03719 237 IPWEGNYSSWL 247 (552)
T ss_pred EEecCCHHHHH
Confidence 5 667776543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=322.75 Aligned_cols=160 Identities=34% Similarity=0.555 Sum_probs=149.3
Q ss_pred EEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|++++++++|+++ ++++++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++ +.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4689999999876 899999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+||++.+++ .|++||+ ||+|||||++|||||+.+|++||||||
T Consensus 81 ~~~~~~~~~-~t~~e~l------------------------------------LS~G~~~rl~la~al~~~p~llllDEP 123 (171)
T cd03228 81 VPQDPFLFS-GTIRENI------------------------------------LSGGQRQRIAIARALLRDPPILILDEA 123 (171)
T ss_pred EcCCchhcc-chHHHHh------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 999998876 5999886 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
|+|||+.++..+.++|+++++ ++|||++||+++++..||++++|++|+
T Consensus 124 ~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 124 TSALDPETEALILEALRALAK-GKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999964 699999999999996699999999874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-47 Score=378.03 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=176.9
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..++++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 419 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQV 419 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhc
Confidence 35899999999964 6799999999999999999999999999999999999999999999999986 459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAr 154 (291)
+|+||++.+|+. |++||+.++.. ...+++ ++.++++.+++. . .+..+ .+||||||||++|||
T Consensus 420 ~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 420 ALVSQNVHLFND-TIANNIAYART-EQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred eEEccCceeecc-hHHHHHhcCCC-CCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 999999999986 99999986421 112233 344445554432 1 23333 469999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999985 46999999999999888999999999999999999887653
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=371.92 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=178.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC--C
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA--L 95 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~--l 95 (291)
.+|+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+ ..+||++|++. +
T Consensus 318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--~~i~~~~q~~~~~~ 395 (530)
T PRK15064 318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--ANIGYYAQDHAYDF 395 (530)
T ss_pred ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc--eEEEEEcccccccC
Confidence 4899999999999889999999999999999999999999999999999999999999999885 56999999974 5
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+|+.+|+.+... . ...++++.++++.+++. . .++++.+||||||||++|||||+.+|++|||||||+|||
T Consensus 396 ~~~~t~~~~~~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD 470 (530)
T PRK15064 396 ENDLTLFDWMSQWRQ----E-GDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470 (530)
T ss_pred CCCCcHHHHHHHhcc----C-CccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 667899999864321 1 11235678899999994 3 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIVE 229 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 229 (291)
+.++..+++.|+++ +.|||++|||++++.. ||++++|++|+++ ..|++.++.+
T Consensus 471 ~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 471 MESIESLNMALEKY---EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999987 3599999999999976 9999999999997 7777765543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=375.37 Aligned_cols=207 Identities=30% Similarity=0.449 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
..++++|++++|+ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||.++ +.|+
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 3489999999999 68999999999999999999999999999999999999999999999999987 4599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH-----HHHcCCCC-CCCCc----CcCChhHHHHHHHHHHHh
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-----LKLLELPP-AKKIV----GALSGGQQRRISFAVSLL 157 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~-----l~~~~l~~-~~~~~----~~LSgGqkQrv~iAral~ 157 (291)
||||++.+|.. |++||+.++... .++++..+.++.+ +..+ +. .+..+ ..||||||||++||||++
T Consensus 407 ~V~Qd~~LF~~-TI~~NI~~g~~~--at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 407 IVSQDPLLFSG-TIRENIALGRPD--ATDEEIEEALKLANAHEFIANL--PDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred EEcccceeecc-cHHHHHhcCCCC--CCHHHHHHHHHHhChHHHHHhC--cccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999995 999999986432 3444544444332 2222 22 34445 469999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
.+|++||||||||+||+.+...+.+.+.++. +++|+|+++|+++.+..||+|++|++|++++.|+++++...
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999999999999999999999999999887 56899999999999999999999999999999999998764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=368.92 Aligned_cols=207 Identities=23% Similarity=0.389 Sum_probs=178.8
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig 87 (291)
.+|+++|+++.+ +.+|+++||++++||++||+||||||||||+|+|+|+.+|++|+|+++|+++. .++
T Consensus 249 ~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 249 VILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred cEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 478999999874 46999999999999999999999999999999999999999999999998762 289
Q ss_pred EEcCCC---CCCCCCCHHHHH-----HHhccccCC-ChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 88 YMPQEL---ALHGELSIRETF-----RYYGYMFDM-TDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl-----~~~~~~~~~-~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral 156 (291)
|+||++ .+|+++|+.+|. .+....++. .....++.+.++++.+++. . .++++++|||||||||+|||||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al 406 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWL 406 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHH
Confidence 999985 478888887773 222111121 2233456678899999994 3 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
+.+|++|||||||+|||+.++..++++|++++++|.|||++|||++++.. ||++++|++|++++.++.+.
T Consensus 407 ~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 407 LTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred hcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999998779999999999999976 99999999999998776643
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=330.63 Aligned_cols=188 Identities=27% Similarity=0.405 Sum_probs=159.2
Q ss_pred EEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeE
Q psy6612 21 AVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDI 86 (291)
Q Consensus 21 ~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~i 86 (291)
.+.+++++|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++ +.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 4788999996 46799999999999999999999999999999999999999999999998753 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----------P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+|++|++.++ ..|++||+.+.... ... ...++++.+++. . .++++.+||||||||++|||
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lar 153 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPF---NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVAR 153 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcC---CHH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHH
Confidence 9999999888 47999999874321 111 122334444432 1 24678999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHH--HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWD--RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~--~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
||+.+|++|||||||+|||+.++..+++ +++.++++|.|+|++||+++.+..||++++|++|
T Consensus 154 al~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 154 ALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 9999999999999999999999999998 6666666689999999999998779999999987
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-46 Score=373.78 Aligned_cols=204 Identities=23% Similarity=0.375 Sum_probs=178.5
Q ss_pred ceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
..+++++++++|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++ +.|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 45899999999964 6799999999999999999999999999999999999999999999999987 4599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCC----CcCcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKK----IVGALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~----~~~~LSgGqkQrv~iAra 155 (291)
|+||++.+|++ |+++|+.++. ..+++ ++.++++.+|+.+ .+. .-..||||||||++||||
T Consensus 419 ~v~Q~~~lF~~-Ti~~NI~~~~---~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 419 MVQQDPVVLAD-TFLANVTLGR---DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred EEccCCccccc-hHHHHHHhCC---CCCHH----HHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999998 9999998753 22333 3455555555431 233 335699999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999864 6999999999999988999999999999999999987643
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=316.00 Aligned_cols=151 Identities=30% Similarity=0.537 Sum_probs=139.1
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig~v 89 (291)
|++++++++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++|+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~ 80 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV 80 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence 46899999999889999999999999999999999999999999999999999999999997642 13333
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|| ||+|||||++|||||+.+|++|||||||
T Consensus 81 ~q--------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 81 YQ--------------------------------------------------LSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred Ee--------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 33 9999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
+|||+.+++.+.+.|++++++|.|||++||+++++.. ||++++|++|++++
T Consensus 111 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 111 AALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999998778999999999999866 99999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=364.06 Aligned_cols=203 Identities=31% Similarity=0.472 Sum_probs=177.3
Q ss_pred EEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 20 VAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 20 l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
++.+++++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+. ++++||
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 3345999999654 999999999999999999999999999999999999999999999999876 469999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-------CCCCcCc----CChhHHHHHHHHHHHhc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-------AKKIVGA----LSGGQQRRISFAVSLLH 158 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~----LSgGqkQrv~iAral~~ 158 (291)
+|+|.+|+. |++||+.++.. ..+++ .+.++++..++.+ .|..+++ |||||+|||++||||++
T Consensus 401 ~Q~p~lf~g-TireNi~l~~~--~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 401 SQNPYLFAG-TIRENILLARP--DASDE----EIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred CCCCccccc-cHHHHhhccCC--cCCHH----HHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999998 99999987532 23333 3445555555421 3555555 99999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++++|+||||++||.++.+.+.+.|.++.+ ++|+|++||++..+..||+|++|++|++++.|.++++.++
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999999999999999999999999985 4999999999999999999999999999999999988553
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=381.24 Aligned_cols=203 Identities=24% Similarity=0.345 Sum_probs=175.4
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..|+++|++++|++ +++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++ +.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 446899999999974 6799999999999999999999999999999999999999999999999987 46
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCC----cCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKI----VGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~----~~~LSgGqkQrv~iA 153 (291)
||||||++.+|+. |++||+.++.. ..+++ ++.++++..++. . .+.. -..||||||||++||
T Consensus 555 i~~v~Q~~~lf~g-Ti~eNi~l~~~--~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 555 VAMVDQDIFLFEG-TVRDNLTLWDP--TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627 (710)
T ss_pred eeEEecCChhhhc-cHHHHhhCCCC--CCCHH----HHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence 9999999999986 99999986421 22333 334444444442 1 2333 356999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++||||||||+||+.+.+.+.+.|++ .++|+|++||+++.+..||+|++|++|+++++|+++++.+
T Consensus 628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999986 4799999999999998899999999999999999988764
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=349.99 Aligned_cols=181 Identities=35% Similarity=0.508 Sum_probs=164.1
Q ss_pred EECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 50 LLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 50 liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
|+||||||||||+|+|+|+++|++|+|.++|+++ +++||+||++.+|+.+|++||+.|....++.+..+.+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999999876 359999999999999999999998654444444555667
Q ss_pred HHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccC
Q psy6612 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHY 200 (291)
Q Consensus 123 ~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd 200 (291)
+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd 160 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHD 160 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 889999999976 68999999999999999999999999999999999999999999999999999754 8999999999
Q ss_pred HhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 201 IEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 201 ~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++++.. ||++++|++|+++..++++++.+.
T Consensus 161 ~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 161 QEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999976 999999999999999998887653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=317.60 Aligned_cols=162 Identities=30% Similarity=0.426 Sum_probs=148.6
Q ss_pred EEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 20 VAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 20 l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
+++++++++|+ ++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|++|++.++ .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~--~~i~~~~q~~~~~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG--EDLLFLPQRPYLP-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC--ceEEEECCCCccc-c
Confidence 46799999995 468999999999999999999999999999999999999999999999885 6799999998876 5
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
.|+.||+.+. ++.+||||||||++|||||+.+|+++||||||++||+.++.
T Consensus 78 ~tv~~nl~~~-----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~ 128 (166)
T cd03223 78 GTLREQLIYP-----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESED 128 (166)
T ss_pred ccHHHHhhcc-----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHH
Confidence 6999998642 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.+.+.|+++ +.|+|++||+++....||++++|+++
T Consensus 129 ~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 129 RLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999986 58999999999877669999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=375.03 Aligned_cols=211 Identities=25% Similarity=0.363 Sum_probs=190.3
Q ss_pred cceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 17 KHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..||+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 2 ~~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred CcEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 357999999999953 5799999999999999999999999999999999999999999999999875
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.. .++++.+||+||+||++|||||+.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 248999999999999999999987543334344455667889999999976 689999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|++|||||||+|||+.+++.+.++|++++++|+|+|++||+++.+..||++++|++|+++.+++.++.
T Consensus 162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 162 GGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 999999999999999999999999999998778999999999998877999999999999998877654
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=374.57 Aligned_cols=206 Identities=30% Similarity=0.449 Sum_probs=180.4
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 415 (574)
T PRK11160 336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQA 415 (574)
T ss_pred CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhh
Confidence 346999999999964 5799999999999999999999999999999999999999999999999986 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C------CC----CcCcCChhHHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A------KK----IVGALSGGQQRRISFAV 154 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~------~~----~~~~LSgGqkQrv~iAr 154 (291)
++|+||++.+|+. |++||+.++.. ..+ .+.+.++++.+++++ . +. ....||||||||++|||
T Consensus 416 i~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialAR 488 (574)
T PRK11160 416 ISVVSQRVHLFSA-TLRDNLLLAAP--NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488 (574)
T ss_pred eeEEcccchhhcc-cHHHHhhcCCC--ccC----HHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHH
Confidence 9999999999986 99999987532 122 235666777777743 2 22 34569999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 489 all~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 489 ALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 9999999999999999999999999999999986 47999999999999988999999999999999998887643
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-46 Score=369.18 Aligned_cols=209 Identities=25% Similarity=0.415 Sum_probs=178.1
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..++++|++++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 346999999999953 6899999999999999999999999999999999999999999999999876 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH-----HHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-----SKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
++|+||++.+|+. |++||+.++.. ..++++..+. +.+.++.+ |++. .......||||||||++||||++
T Consensus 394 i~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 394 IGYLPQDVELFPG-TVAENIARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred eEEecCCcccccc-cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 9999999999987 99999985432 1233332222 22344444 3332 34556789999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
++|++|||||||++||+.+++.+.+.|+++..+++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHh
Confidence 99999999999999999999999999999875689999999999988779999999999999999987664
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=370.79 Aligned_cols=212 Identities=28% Similarity=0.447 Sum_probs=183.8
Q ss_pred cccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 15 EVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.++..++++|+++.|.. .++|+|+||+|+|||++||+||||+||||+.++|..++.|++|+|.+||.++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 46678999999999964 5799999999999999999999999999999999999999999999999998
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH--HHH-cCCCC-CCCCc----CcCChhHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI--LKL-LELPP-AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~--l~~-~~l~~-~~~~~----~~LSgGqkQrv~iAr 154 (291)
++||+|-|+|.||.. |++|||.|+.. ..+.+++...++.+ -++ .++++ .+..+ .+||||||||+||||
T Consensus 541 r~~Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHH
Confidence 469999999999997 99999998765 44445444333322 111 12332 34444 479999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|.||||||.||+||.++...+.+.|.++.+ ++|||++.|.++.++.||+|+++++|++++.|+++++.+.
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 99999999999999999999999999999999874 5999999999999999999999999999999999988765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=379.90 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=177.3
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++ +.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~ 540 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRN 540 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhc
Confidence 346899999999963 5799999999999999999999999999999999999999999999999987 36
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iA 153 (291)
++||+|++.+|+. |++||+.++.. ..+++ ++.++++..++. . .+ ..-..||||||||++||
T Consensus 541 i~~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalA 613 (694)
T TIGR03375 541 IGYVPQDPRLFYG-TLRDNIALGAP--YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALA 613 (694)
T ss_pred cEEECCChhhhhh-hHHHHHhCCCC--CCCHH----HHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHH
Confidence 9999999999986 99999987532 12333 334444444432 1 22 23356999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+.+|++||||||||+||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 614 Rall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 614 RALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999999986 47999999999999988999999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=335.33 Aligned_cols=185 Identities=27% Similarity=0.416 Sum_probs=169.0
Q ss_pred ceEEEEeEEEEECC---------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEE
Q psy6612 18 HSVAVTSAYKKIGN---------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~---------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~ 88 (291)
.+++++|+++.|.. ..|++||||+|++||++||+|+||||||||-|+|+|+++|++|+|+++|+++..+.
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~- 81 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS- 81 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence 46889999999942 48999999999999999999999999999999999999999999999998864432
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllD 166 (291)
..+..+++.++|+.+|+.. .++++++|||||+||++|||||+.+|+++++|
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~D 134 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVAD 134 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEec
Confidence 3445677899999999964 68999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+|+||...+.+++++|.++++ .|.|.+++|||++.+.. |||+++|..|++++.++.+++...
T Consensus 135 EpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 135 EPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred CchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 99999999999999999999985 49999999999999987 999999999999999999888764
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=365.60 Aligned_cols=205 Identities=25% Similarity=0.421 Sum_probs=174.0
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec----------Ce
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI----------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~----------~~ 85 (291)
+.+|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++ +.
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4589999999999988899999999999999999999999999999999998876 699999998643 34
Q ss_pred EEEEcCCCCCCCC--CCHHHHHHHhcc----ccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGE--LSIRETFRYYGY----MFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~--ltv~enl~~~~~----~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+||++|++.++.. .++.+++.+... .+.......++++.++++.+++.. .++++.+|||||||||+|||||+
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 9999999765442 467666643211 111112233457888999999964 58899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC-cEEEEEccCHhHHh-h-hCeEEEEeCCEEEEE
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG-KTIIITTHYIEEAK-G-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tHd~~~~~-~-~d~i~~l~~G~i~~~ 221 (291)
.+|++|||||||+|||+.++..++++|+++++++ .|||++|||++++. . ||++++|++|+++..
T Consensus 418 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 418 KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999998665 57999999999995 3 899999999998764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=365.52 Aligned_cols=206 Identities=26% Similarity=0.374 Sum_probs=177.3
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-CC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-AL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~-~l 95 (291)
+.+|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ + ..+||+||++ .+
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-~~i~~v~q~~~~~ 397 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-VKLAYVDQSRDAL 397 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-eEEEEEeCCcccc
Confidence 4589999999999988999999999999999999999999999999999999999999999954 2 2699999997 47
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+|+.||+.+....++.... ...+.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+|||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD 475 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475 (552)
T ss_pred CCCCcHHHHHHhhccccccCcc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 8889999999875432222211 223557899999963 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC-CEEE-EEechhHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD-DQYI-GRLVHHDIVE 229 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~-G~i~-~~~~~~~~~~ 229 (291)
+.++..++++|+++. + |||++|||++++.. ||++++|++ |++. ..|..++..+
T Consensus 476 ~~~~~~l~~~l~~~~--~-~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 476 VETLRALEEALLEFA--G-CAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHHHHHHHHHHCC--C-eEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999983 3 89999999999976 999999987 5765 5566655443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=379.95 Aligned_cols=205 Identities=28% Similarity=0.394 Sum_probs=176.3
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
...++++|++++|+ ++++|+|+||+|++|+.+||+||||||||||+++|+|+++|++|+|++||.++ +.|
T Consensus 471 ~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 471 NGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred CCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 44689999999996 46899999999999999999999999999999999999999999999999986 369
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCC----CcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKK----IVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~----~~~~LSgGqkQrv~iAr 154 (291)
|||||++.+|+. |++||+.++.. ...++++ +.++++..++. . .+. ....||||||||++|||
T Consensus 551 ~~v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~----i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 551 NYLPQEPYIFSG-SILENLLLGAK-ENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred EEEecCceehhH-HHHHHHhccCC-CCCCHHH----HHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHH
Confidence 999999999987 99999987521 1223333 33444444431 1 233 33569999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++++|++||||||||+||+.+.+.+.+.|+++ +++|+|++||+++.+..||+|++|++|+++++|+++++.+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999986 4789999999999998899999999999999999887754
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=379.86 Aligned_cols=203 Identities=25% Similarity=0.371 Sum_probs=173.0
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
+..++++|++++|++ +++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++ +
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~ 555 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHR 555 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHh
Confidence 446999999999964 5799999999999999999999999999999999999999999999999986 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCC----cCcCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKI----VGALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~----~~~LSgGqkQrv~i 152 (291)
+|+||+|++.+|+. |++||+.++.. ..+++ ++.++++..++.+ .+.. -.+||||||||++|
T Consensus 556 ~i~~v~Q~~~lF~g-TIreNI~~g~~--~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlal 628 (711)
T TIGR00958 556 QVALVGQEPVLFSG-SVRENIAYGLT--DTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAI 628 (711)
T ss_pred hceEEecCcccccc-CHHHHHhcCCC--CCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHH
Confidence 69999999999986 99999987532 22222 3444555554421 2333 34699999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||++++|++||||||||+||+.+.+.+.+ .. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 629 ARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 629 ARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred HHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHh
Confidence 999999999999999999999999999988 22 235799999999999998899999999999999999988764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=367.74 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=175.6
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+..+++++++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ +.|
T Consensus 332 ~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 346999999999965 6799999999999999999999999999999999999999999999999886 469
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iAr 154 (291)
+|+||++.+|+. |++||+.++.. ..++++ +.++++.+++. . .+ .....||||||||++|||
T Consensus 412 ~~v~Q~~~lf~~-Ti~~Ni~~~~~--~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialAR 484 (588)
T PRK13657 412 AVVFQDAGLFNR-SIEDNIRVGRP--DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIAR 484 (588)
T ss_pred EEEecCcccccc-cHHHHHhcCCC--CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHH
Confidence 999999999986 99999987521 223333 33333333321 1 22 233469999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|+++|||||||+||+.+.+.+++.|.++. +++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999875 4799999999999988899999999999999999887754
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=363.85 Aligned_cols=207 Identities=26% Similarity=0.384 Sum_probs=178.5
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-CC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-AL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~-~l 95 (291)
+.+|+++++++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+||+||++ .+
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-~~i~~v~q~~~~~ 399 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-VKLAYVDQSRDAL 399 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-eEEEEEeCchhhc
Confidence 4589999999999999999999999999999999999999999999999999999999999954 2 3699999997 78
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+|+.||+.+.....+.... ...+.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+|||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD 477 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477 (556)
T ss_pred CCCCCHHHHHHhhccccccccc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 8889999999875433222211 123456899999963 589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC-CEEE-EEechhHHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD-DQYI-GRLVHHDIVES 230 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~-G~i~-~~~~~~~~~~~ 230 (291)
+.++..+++.|+++. + |||++|||++++.. ||++++|++ |++. ..|+.+++.+.
T Consensus 478 ~~~~~~l~~~l~~~~--~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 478 VETLRALEEALLEFP--G-CAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHHHHHHHHHHhCC--C-eEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 999999999999973 4 89999999999976 999999986 7775 46776665443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-45 Score=333.92 Aligned_cols=201 Identities=25% Similarity=0.292 Sum_probs=166.9
Q ss_pred ccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC
Q psy6612 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~ 93 (291)
..-.+.|+++++++. ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++
T Consensus 34 ~~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----~i~yv~q~~ 107 (282)
T cd03291 34 SSDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----RISFSSQFS 107 (282)
T ss_pred CCCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC----EEEEEeCcc
Confidence 334556889999985 46799999999999999999999999999999999999999999999998 499999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC------------CCCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP------------PAKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
.+++. |++||+.+.... ... ++.++++.+++. ..++++.+||||||||++|||||+.+|+
T Consensus 108 ~l~~~-tv~enl~~~~~~---~~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 108 WIMPG-TIKENIIFGVSY---DEY----RYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccc-CHHHHhhccccc---CHH----HHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 88875 999999864221 111 111222222221 1234568999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+.+.+ .++. ++.|||++||+++++..||++++|++|+++..++++++..
T Consensus 180 iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 180 LYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999865 5554 4789999999999987799999999999999999887654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=354.69 Aligned_cols=205 Identities=25% Similarity=0.397 Sum_probs=181.3
Q ss_pred ccceEEEEeEEEEECCEe-eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 16 VKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~-~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
....|+++|++++|++++ +|+++||+|++||-+||+|+|||||||++|+|.++.. ++|+|.+||.++ +-
T Consensus 348 ~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 455699999999999877 9999999999999999999999999999999999999 899999999998 24
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C-------CC----CcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A-------KK----IVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-------~~----~~~~LSgGqkQrv~iA 153 (291)
||||||+..||++ |+..|+.|+.. ..+. +++.++.+.+++++ . .+ +-..|||||||||+||
T Consensus 427 Ig~VPQd~~LFnd-TIl~NI~YGn~--sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 427 IGVVPQDSVLFND-TILYNIKYGNP--SASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred eeEeCCcccccch-hHHHHhhcCCC--CcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHH
Confidence 9999999999998 99999987642 1222 34566677777753 1 12 2235999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||++.+|+++++|||||+||.++.+.+++.+.+. ..++|+|++-|+++.++.||+|+++++|++.+.|+++++..
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 9999999999999999999999999999999994 35899999999999999999999999999999999999876
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=341.15 Aligned_cols=215 Identities=22% Similarity=0.361 Sum_probs=194.3
Q ss_pred ccceEEEEeEEEEEC-----------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-
Q psy6612 16 VKHSVAVTSAYKKIG-----------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~-----------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~- 83 (291)
-...|+.+++...|. ...+++++||++.+||.+||+|+||||||||-++|.++++++ |+|.|+|+++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 344678888888882 246999999999999999999999999999999999999886 9999999987
Q ss_pred -----------CeEEEEcCCC--CCCCCCCHHHHHHHhccccC--CChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhH
Q psy6612 84 -----------SDIGYMPQEL--ALHGELSIRETFRYYGYMFD--MTDDQIETRSKEILKLLELPP--AKKIVGALSGGQ 146 (291)
Q Consensus 84 -----------~~ig~v~q~~--~l~~~ltv~enl~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGq 146 (291)
+++..||||| +|.|.|||.+.+.-+...+. .+..+..+++.++|+.+||+. .+++|+++||||
T Consensus 352 ~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQ 431 (534)
T COG4172 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQ 431 (534)
T ss_pred ccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcch
Confidence 3599999998 58999999999987766553 567777889999999999976 689999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
|||++||||++.+|++++||||||+||..-+.++.++|++|. +.|.+-+|+|||+..++. ||++++|++|+|+++|+.
T Consensus 432 RQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~ 511 (534)
T COG4172 432 RQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPT 511 (534)
T ss_pred hhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCH
Confidence 999999999999999999999999999999999999999997 568999999999999977 999999999999999999
Q ss_pred hHHHHHH
Q psy6612 225 HDIVESL 231 (291)
Q Consensus 225 ~~~~~~~ 231 (291)
+++++..
T Consensus 512 ~~if~~P 518 (534)
T COG4172 512 EAVFANP 518 (534)
T ss_pred HHHhcCC
Confidence 9887653
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-45 Score=365.78 Aligned_cols=210 Identities=22% Similarity=0.329 Sum_probs=177.7
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 332 ~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 332 KGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 346999999999975 5799999999999999999999999999999999999999999999999876 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH-----HHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE-----ILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~-----~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
+|++|++.+|+. |++||+.++.. ..++++..+.++. .+..+ |++. .......||||||||++|||||+.
T Consensus 412 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 412 ATVFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred EEEccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999975 99999987532 2233333332221 12222 2322 345567899999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHC
Confidence 999999999999999999999999999885 47999999999999978999999999999999998877543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=368.54 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|.+ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~ 407 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQ 407 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhh
Confidence 346999999999964 6799999999999999999999999999999999999999999999999886 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iA 153 (291)
++|+||++.+|+. |++||+.++.. ...++ +++.++++.+++++ .+..+ ..||||||||++||
T Consensus 408 i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 408 VALVSQDVVLFND-TIANNIAYGRT-EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred ceEEccCcccccc-cHHHHHhcCCC-CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 9999999999987 99999986531 01222 34555555555421 23333 46999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||++.+|+++|||||||+||+.+.+.+++.|.++. +++|+|++||+.+.+..||+|++|++|++++.|+++++.+
T Consensus 482 Rall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999985 4699999999999988899999999999999999988754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=334.18 Aligned_cols=198 Identities=28% Similarity=0.477 Sum_probs=177.4
Q ss_pred EEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeEEEEcC
Q psy6612 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDIGYMPQ 91 (291)
Q Consensus 25 l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ig~v~q 91 (291)
+.+++|+. +| +++|+.+.-.++||.|+||||||||+|+|+|+.+|+.|.|.++|+.+ ++||||||
T Consensus 6 ~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 6 FRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 44555543 44 58999998679999999999999999999999999999999999764 57999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
+..|||.+||+.|+.|+.+.. .....+++.+.+|+.+ .+++|..|||||||||+|+|||+.+|++|+||||.+
T Consensus 84 DARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLa 157 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLA 157 (352)
T ss_pred ccccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchh
Confidence 999999999999999876532 2345677889999987 799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||..-+++++-+|.+++++ +.-|+.|||.++++.+ ||++++|++|++.+.|..+++...
T Consensus 158 SLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 158 SLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 99999999999999999865 7899999999999987 999999999999999998887654
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-45 Score=328.37 Aligned_cols=178 Identities=27% Similarity=0.396 Sum_probs=153.7
Q ss_pred eEeeeeEEEe-----CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 34 VLKGLNLNVP-----ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 34 ~L~~vsl~i~-----~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
.+++++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++|++..++.+|+.||+.+.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~---~i~~~~q~~~~~~~~tv~e~l~~~ 85 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD---TVSYKPQYIKADYEGTVRDLLSSI 85 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc---eEEEecccccCCCCCCHHHHHHHH
Confidence 4555666665 79999999999999999999999999999999999985 699999999877788999998754
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 109 GYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
...... ....+.++++.+++.. .++++.+|||||||||+|||||+.+|+++||||||++||+.++..+.++|+++
T Consensus 86 ~~~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 161 (246)
T cd03237 86 TKDFYT----HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRF 161 (246)
T ss_pred hhhccc----cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 321111 1234567889999975 68899999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 188 AL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 188 ~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
++ .|+|||++|||++++.. ||++++|+++..
T Consensus 162 ~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 162 AENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 75 48999999999999976 999999976543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=339.78 Aligned_cols=214 Identities=24% Similarity=0.365 Sum_probs=191.3
Q ss_pred cceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-----CccEEEECCEec----
Q psy6612 17 KHSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-----DAGTIKLSFRQI---- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-----~~G~I~~~g~~~---- 83 (291)
.+.|+++|++..|+ ...++++|||++++||.+||+|+||||||-..+.|+|+++. -+|+|.|+|+++
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 34688999999996 67899999999999999999999999999999999999864 379999999986
Q ss_pred ---------CeEEEEcCCC--CCCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhHH
Q psy6612 84 ---------SDIGYMPQEL--ALHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELPP----AKKIVGALSGGQQ 147 (291)
Q Consensus 84 ---------~~ig~v~q~~--~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGqk 147 (291)
.+|+++||+| +|.|-.|+..-+.-...+ .+.+..+.+.++.++++.+|+.+ .+.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 3699999998 466767887766544333 46778888999999999999953 4789999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 148 Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
|||+||.||+.+|++||.||||++||...+.+|+++|++|. +.|++++++|||+..++. ||||++|.+|++++.+..+
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~ 243 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTE 243 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeecCcHH
Confidence 99999999999999999999999999999999999999997 459999999999999987 9999999999999999988
Q ss_pred HHHHH
Q psy6612 226 DIVES 230 (291)
Q Consensus 226 ~~~~~ 230 (291)
.++..
T Consensus 244 ~lF~~ 248 (534)
T COG4172 244 TLFAA 248 (534)
T ss_pred HHhhC
Confidence 77664
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-45 Score=362.12 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=175.4
Q ss_pred ceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 18 HSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 18 ~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
..++++|++++|.+ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 45899999999964 5799999999999999999999999999999999999999999999999876 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iA 153 (291)
++|+||++.+|+. |++||+.++.. ..++ +++.++++.+++. . .+ .....||||||||++||
T Consensus 416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 416 MALVPQDPVLFAA-SVMENIRYGRP--DATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred ceEEccCCccccc-cHHHHHhcCCC--CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHH
Confidence 9999999999986 99999987431 1222 2344445554432 1 12 23456999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||++++|++||||||||+||+.+++.+++.|+++. +++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999985 4799999999999988899999999999999999887654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=315.30 Aligned_cols=212 Identities=22% Similarity=0.374 Sum_probs=191.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC-Eec----------CeE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF-RQI----------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g-~~~----------~~i 86 (291)
..|++++++.+|++..||+++||++.+||.-+|||||||||||+|.+|+|..+|+.|+|+++| .++ ..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 457899999999999999999999999999999999999999999999999999999999999 565 248
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc--------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM--------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~--------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
|--||.|..|+++||+||+.+.... +.....+.+.+++++|...||.+ .++..+.||.||||++.|+..++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 9999999999999999999875432 12223345678999999999976 78999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++|++|++|||++|+-.....+..++|+.++. +.+|+++.|||++++. |++|-+|+.|.+.++|+.+++.++
T Consensus 164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred cCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcC
Confidence 99999999999999999999999999999984 5799999999999977 999999999999999998877554
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-45 Score=363.26 Aligned_cols=198 Identities=24% Similarity=0.313 Sum_probs=175.0
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
..+++++++++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ .+++|+||++.++
T Consensus 338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~----~~i~y~~Q~~~~~ 412 (590)
T PRK13409 338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE----LKISYKPQYIKPD 412 (590)
T ss_pred ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----eeEEEecccccCC
Confidence 4579999999999875 4999999999999999999999999999999999999999999986 3699999999888
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+.+||.||+.+....+ .. ...+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 413 ~~~tv~e~l~~~~~~~--~~---~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~ 487 (590)
T PRK13409 413 YDGTVEDLLRSITDDL--GS---SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487 (590)
T ss_pred CCCcHHHHHHHHhhhc--Ch---HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 8899999998642211 11 234678899999975 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 176 LSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 176 ~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
++..+.++|+++++ .|+|||++|||++++.. |||+++|++ ++...|...
T Consensus 488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~~ 538 (590)
T PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHAS 538 (590)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeecC
Confidence 99999999999975 48999999999999976 999999965 776666543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=369.39 Aligned_cols=210 Identities=25% Similarity=0.407 Sum_probs=176.9
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
...++++|++++|+ ++++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|+++|.++ +.
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~ 532 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQ 532 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHh
Confidence 44699999999995 35799999999999999999999999999999999999999999999999987 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
++||+|++.+|+. |++||+.+... ..+.++..+.++ +.++.+ |++. ......+||||||||++|||||+
T Consensus 533 i~~v~q~~~lf~~-ti~eNi~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall 609 (694)
T TIGR01846 533 MGVVLQENVLFSR-SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALV 609 (694)
T ss_pred CeEEccCCeehhh-hHHHHHhcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999986 99999987432 223333322221 122222 2221 23345679999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++|++|||||||++||+.+++.+.+.|+++. .++|+|++||+++.+..||++++|++|+++++|+++++.+.
T Consensus 610 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~ 681 (694)
T TIGR01846 610 GNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681 (694)
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc
Confidence 9999999999999999999999999999985 57999999999999988999999999999999999887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=361.73 Aligned_cols=204 Identities=25% Similarity=0.383 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..+++++++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++ +.+
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 391 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRL 391 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhhe
Confidence 35889999999964 5799999999999999999999999999999999999999999999999986 359
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----------P-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+|++|++.+|+. |++||+.++.. ..++++ +.++++..++. . .+.....||||||||++|||
T Consensus 392 ~~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lAR 464 (569)
T PRK10789 392 AVVSQTPFLFSD-TVANNIALGRP--DATQQE----IEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIAR 464 (569)
T ss_pred EEEccCCeeccc-cHHHHHhcCCC--CCCHHH----HHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHH
Confidence 999999999986 99999986532 122332 33334443331 1 23345679999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 465 all~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 538 (569)
T PRK10789 465 ALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQ 538 (569)
T ss_pred HHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999985 5899999999999988899999999999999999887764
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=381.07 Aligned_cols=210 Identities=30% Similarity=0.530 Sum_probs=178.4
Q ss_pred cccceEEEEeEEEEECCE---eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 15 EVKHSVAVTSAYKKIGNH---VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~---~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.++..++++|++++|..+ ++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.+||.++
T Consensus 346 ~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred ccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHH
Confidence 356679999999999754 699999999999999999999999999999999999999999999999987
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHcCCCC-CCCCc----CcCChhHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLLELPP-AKKIV----GALSGGQQRRISF 152 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~-~~~~~----~~LSgGqkQrv~i 152 (291)
.+||.|+|+|.+|. .|++||+.|+.. +...++..+.++ +.+.. ++. .+..+ -+||||||||++|
T Consensus 426 r~~iglV~QePvlF~-~tI~eNI~~G~~--dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~qLSGGQKQRIAI 500 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA-TTIRENIRYGKP--DATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQLSGGQKQRIAI 500 (1228)
T ss_pred HhhcCeeeechhhhc-ccHHHHHhcCCC--cccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCCCChHHHHHHHH
Confidence 46999999998887 499999987532 122333333321 11222 221 23333 3599999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+.+|++||||||||+||+++++.+.+.|.+.. .|+|.|+|+|+++.++.||++++|++|+|++.|+++++...
T Consensus 501 ARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 501 ARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred HHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 999999999999999999999999999999999876 58899999999999999999999999999999999998764
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=320.11 Aligned_cols=188 Identities=21% Similarity=0.216 Sum_probs=159.1
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-ECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-LSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+ .+.+.+.+++.+|+.||+.+....
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~----~~~~~~~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL----PLGANSFILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee----ccccccccCCcCcHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999997 777543 233567788999999999886555
Q ss_pred cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
++....+. ...+.+.++++. .++++++||+|||||++|||||+.+|+++||||||+++|+.++..+.+.+.+..+
T Consensus 77 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~- 152 (213)
T PRK15177 77 YGLDGDEF---SHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ- 152 (213)
T ss_pred cCCCHHHH---HHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-
Confidence 54443322 223445567765 6789999999999999999999999999999999999999999999998866443
Q ss_pred CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 191 GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 191 g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
+.|+|++||+++++.. ||++++|++|+++..++.++..
T Consensus 153 ~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 153 QKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred CCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 4689999999999975 9999999999999988877654
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=322.11 Aligned_cols=211 Identities=26% Similarity=0.405 Sum_probs=182.3
Q ss_pred cccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
+......|+++|++..|+++++|+|+|++|++||-++|+|||||||||||++++|..+|++|.+.+.|+.+
T Consensus 25 ~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 25 IEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 33344679999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CeEEEEcCC--CCCCCCCCHHHHHHHh--cc--ccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHH
Q psy6612 84 -SDIGYMPQE--LALHGELSIRETFRYY--GY--MFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 -~~ig~v~q~--~~l~~~ltv~enl~~~--~~--~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
++||||... ..+.++.+++|.+.-+ .. .+. ...++...++..+++.+|+.. .+++..+||-||||||.|||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHH
Confidence 468998754 2344566788876421 11 122 334566778899999999976 79999999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC--CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN--GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~--g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||+.+|++|||||||+|||..++..+.+.|.+++.. +.++|+|||+.+++-. .++++.+++|+++.+|.
T Consensus 185 ALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 999999999999999999999999999999999843 6899999999999966 79999999999998763
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=363.61 Aligned_cols=201 Identities=23% Similarity=0.366 Sum_probs=176.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC--C
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL--A 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~--~ 94 (291)
+.+|+++++++.|+++.+|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. .++||++|+. .
T Consensus 310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~igy~~Q~~~~~ 387 (638)
T PRK10636 310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--IKLGYFAQHQLEF 387 (638)
T ss_pred CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--EEEEEecCcchhh
Confidence 45899999999999999999999999999999999999999999999999999999999999643 3699999974 3
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+.+..|+.+++... . .......+.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+||
T Consensus 388 l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L 461 (638)
T PRK10636 388 LRADESPLQHLARL---A---PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 (638)
T ss_pred CCccchHHHHHHHh---C---chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 55667888776321 1 1223456788999999953 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIV 228 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~ 228 (291)
|+.++..+.+.|.++ .| |||+||||++++.. ||++++|++|+++ ..|+.++..
T Consensus 462 D~~~~~~l~~~L~~~--~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 462 DLDMRQALTEALIDF--EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CHHHHHHHHHHHHHc--CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999998 34 99999999999976 9999999999997 778887764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=353.75 Aligned_cols=203 Identities=29% Similarity=0.459 Sum_probs=179.5
Q ss_pred eEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 19 SVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
.++++|++++|.+. ++|+|+||++++||.++|+|++|||||||+.+|+|.++|++|+|.++|.++ ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 68999999999775 599999999999999999999999999999999999999999999999876 2489
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iAra 155 (291)
+++|.+.+|.. |+++|+.+... +.++ +.+.++++.+||++ .+..+ ..||||||||++|||+
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~--~AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~ 488 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANP--DASD----EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARA 488 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCC--CCCH----HHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHH
Confidence 99999999987 99999987532 2233 34556677777743 12233 4699999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|.+++||||||.|||+.+.+++++.|.+.. +|+|+||+||++..++.||+|++|++|+++++|.+.++..
T Consensus 489 LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 489 LLHDAPLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred HHcCCCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhc
Confidence 999999999999999999999999999999876 4899999999999999999999999999999999988765
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=362.23 Aligned_cols=205 Identities=24% Similarity=0.314 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-CC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-AL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~-~l 95 (291)
+.+|+++|+++.|+++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+ |.++ .+||++|++ .+
T Consensus 317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-~i~y~~q~~~~l 394 (635)
T PRK11147 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-EVAYFDQHRAEL 394 (635)
T ss_pred CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-EEEEEeCccccc
Confidence 44799999999999999999999999999999999999999999999999999999999999 5443 699999986 58
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
++.+||.||+.+........ .....+.++++.+++. . .++++++|||||||||+|||||+.+|++|||||||+|||
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD 472 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVN--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLD 472 (635)
T ss_pred CCCCCHHHHHHhhccccccc--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 88999999998643211111 1234577889999985 3 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEe-CCEEEE-EechhHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMR-DDQYIG-RLVHHDIV 228 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~-~G~i~~-~~~~~~~~ 228 (291)
+.++..+.++|+++ +.|||+||||.+++.. ||++++|+ +|+++. .|..++..
T Consensus 473 ~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 473 VETLELLEELLDSY---QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred HHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999887 3599999999999976 99999998 798864 56666553
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=310.76 Aligned_cols=195 Identities=24% Similarity=0.379 Sum_probs=175.2
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcC
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQ 91 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q 91 (291)
+++++.+.-++.++|+++||++.+||+.+|.||+|||||||+|+++.+++|++|+++|.|+++ .+|+|+.|
T Consensus 5 e~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q 84 (223)
T COG4619 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQ 84 (223)
T ss_pred HHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHc
Confidence 445565566788999999999999999999999999999999999999999999999999987 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
.|.||++ ||+||+.|+...++.. ..+.++..+++.+++.+ +++.+.+||||||||++|+|-|..-|++|+|||||
T Consensus 85 ~paLfg~-tVeDNlifP~~~r~rr--~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 85 TPALFGD-TVEDNLIFPWQIRNRR--PDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred Ccccccc-chhhccccchHHhccC--CChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 9999998 9999999876665422 23567778999999975 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHh-hhCeEEEEeCCEE
Q psy6612 170 VGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAK-GAHNIGLMRDDQY 218 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~-~~d~i~~l~~G~i 218 (291)
|+||+.+++.+-++|.++. ++..+++.+|||.+++- .+|+++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999999999999999997 67899999999999975 4999999998854
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-45 Score=326.28 Aligned_cols=199 Identities=29% Similarity=0.444 Sum_probs=181.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc-CCCCCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP-QELALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~-q~~~l~~~ltv~ 102 (291)
..+++|+||+|++|+++|++|||||||||++|+++|++.|++|.|.++|.+. +++++|+ |...+.+.+.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3589999999999999999999999999999999999999999999999865 4588876 445677777888
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~ 181 (291)
+-+.....+|..+.+..+++.+.+.+.++++. .+.+++.||-|||.|+.||.||+++|+||+|||||-|||..++..+.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir 196 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIR 196 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHH
Confidence 88877777788888888999999999999976 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 182 DRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 182 ~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+.++++. +++.||+++||+++.+.. ||||+.|++|+++.+|+..++.+.
T Consensus 197 ~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 197 EFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred HHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 9999997 458999999999999976 999999999999999998776654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=359.56 Aligned_cols=204 Identities=22% Similarity=0.265 Sum_probs=170.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
||+++|++++||++.+|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|. ..++|++|++..+.
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--~~i~~~~q~~~~~~- 77 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--WQLAWVNQETPALP- 77 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--CEEEEEecCCCCCC-
Confidence 578999999999999999999999999999999999999999999999999999999999885 35899999754332
Q ss_pred CCHHHHHHHhc-----------------------ccc----CCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHH
Q psy6612 99 LSIRETFRYYG-----------------------YMF----DMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRR 149 (291)
Q Consensus 99 ltv~enl~~~~-----------------------~~~----~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQr 149 (291)
.|+.+++.-.. ... .....+...++.++++.+|+. . .++++++||||||||
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqR 157 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMR 157 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHH
Confidence 46655542100 000 001112345778899999996 3 689999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~ 227 (291)
|+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||.+++.. ||++++|++|+++ ..|..+..
T Consensus 158 v~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 158 LNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99999999999999999999999999999999999886 4699999999999976 9999999999996 45665544
Q ss_pred H
Q psy6612 228 V 228 (291)
Q Consensus 228 ~ 228 (291)
.
T Consensus 235 ~ 235 (638)
T PRK10636 235 E 235 (638)
T ss_pred H
Confidence 3
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=359.72 Aligned_cols=200 Identities=31% Similarity=0.432 Sum_probs=179.0
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec------CeEEEEcCCCCCCCCCC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI------SDIGYMPQELALHGELS 100 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~------~~ig~v~q~~~l~~~lt 100 (291)
+++++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.++ +.+||++|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 4678999999999999999999999999999999999999885 79999999886 35899999999999999
Q ss_pred HHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC-CCCCcC------cCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 101 IRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP-AKKIVG------ALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 101 v~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~~------~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
|+||+.|..... ..+.++.+++++++++.+|+.+ .+++++ .|||||||||+|||||+.+|++++|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 999999876543 2334556678899999999975 677776 499999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh-HH-hhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIE-EA-KGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~-~~-~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.++..+++.|++++++|+|||+++|+++ ++ ..||++++|++|+++..|++++..+
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 99999999999999999877999999999995 55 4599999999999999999887654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=324.61 Aligned_cols=192 Identities=20% Similarity=0.302 Sum_probs=165.9
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEecC------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-----------LSFRQIS------ 84 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~~------ 84 (291)
.+++++|+.+ .+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+ ++|.++.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4688999765 59999995 999999999999999999999999999999999996 7786641
Q ss_pred -----eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 85 -----~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
.++|++|...+++. ++.+++.+.. .....+..+.++++.+++.. .++++.+||+|||||++|||||+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 37899999888874 7888876532 12233456788999999976 688999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEe
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRL 222 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~ 222 (291)
+|+++||||||++||+.++..+.+.|++++++++|||++||+++++.. ||++++|+ |++.+.|
T Consensus 157 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999999998778999999999999976 99999995 5565443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=385.59 Aligned_cols=206 Identities=27% Similarity=0.409 Sum_probs=177.0
Q ss_pred cceEEEEeEEEEEC---CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----------------------
Q psy6612 17 KHSVAVTSAYKKIG---NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---------------------- 71 (291)
Q Consensus 17 ~~~l~~~~l~~~~~---~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p---------------------- 71 (291)
+..|+++|++++|. +.++|+|+||+|++|+.+||+||||||||||+++|+|+++|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 34699999999995 35799999999999999999999999999999999999998
Q ss_pred --------------------------------CccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 72 --------------------------------DAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 72 --------------------------------~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
++|+|+++|.++ +.||||+|+|.+|+. |++|||.++..
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~~ 1321 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCCC
Confidence 699999999987 359999999999975 99999998632
Q ss_pred ccCCChHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 111 MFDMTDDQIETRSKEILKLLEL-------PP-AKKIV----GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
..+.++ +.++++..++ +. .+..+ ..||||||||++|||||+++|++||||||||+||+.+.+
T Consensus 1322 --~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~ 1395 (1466)
T PTZ00265 1322 --DATRED----VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395 (1466)
T ss_pred --CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHH
Confidence 223333 4444444443 22 34444 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-hCCcEEEEEccCHhHHhhhCeEEEEeC----CEEE-EEechhHHHH
Q psy6612 179 IIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRD----DQYI-GRLVHHDIVE 229 (291)
Q Consensus 179 ~i~~~l~~l~-~~g~tii~~tHd~~~~~~~d~i~~l~~----G~i~-~~~~~~~~~~ 229 (291)
.+.+.|.++. .+++|+|+|||+++.++.||+|++|++ |+++ ++|+++++..
T Consensus 1396 ~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 9999999986 358999999999999999999999999 8855 8999988764
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=352.98 Aligned_cols=193 Identities=20% Similarity=0.226 Sum_probs=167.7
Q ss_pred ceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 18 HSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
..++++|++++|++ .++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++ +.++
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 400 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFS 400 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheE
Confidence 36899999999964 5799999999999999999999999999999999999999999999999986 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCC-----cCcCChhHHHHHHHHHHHhcCCC
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI-----VGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkQrv~iAral~~~p~ 161 (291)
|++|++.+|+. |+++| . . ....+.+.++++.+++.. .+.. -.+||||||||++||||++++|+
T Consensus 401 ~v~q~~~lf~~-ti~~n---~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ 469 (547)
T PRK10522 401 AVFTDFHLFDQ-LLGPE---G---K----PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERD 469 (547)
T ss_pred EEecChhHHHH-hhccc---c---C----chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999886 78777 1 0 122345677888888753 2211 34799999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+||||||||+||+.+++.+.+.+.+.. +.++|+|++||+++.+..||++++|++|++++.
T Consensus 470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999998764 358999999999988888999999999999865
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=381.03 Aligned_cols=209 Identities=28% Similarity=0.420 Sum_probs=186.5
Q ss_pred ceEEEEeEEEEEC----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC---CCccEEEECCEec-----Ce
Q psy6612 18 HSVAVTSAYKKIG----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT---LDAGTIKLSFRQI-----SD 85 (291)
Q Consensus 18 ~~l~~~~l~~~~~----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~---p~~G~I~~~g~~~-----~~ 85 (291)
.+++++|+++.|+ ++.+|+|||+++++||++||+|||||||||||++|+|+.+ |++|+|.++|+++ +.
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3688999999994 4689999999999999999999999999999999999997 7899999999886 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHHHHHHcCCCC-CCCCcC----cCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKEILKLLELPP-AKKIVG----ALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~----~LSgGqkQrv~iAral~ 157 (291)
+||++|++.+++.+||+||+.+...++. .++++..++++++++.+++.+ .++.++ .||||||||++||+||+
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHH
Confidence 9999999988999999999998755432 334455677899999999976 677777 79999999999999999
Q ss_pred cCCC-EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH--hhhCeEEEEeCC-EEEEEechhH
Q psy6612 158 HNPK-LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA--KGAHNIGLMRDD-QYIGRLVHHD 226 (291)
Q Consensus 158 ~~p~-llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~--~~~d~i~~l~~G-~i~~~~~~~~ 226 (291)
.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++||+++.. ..||++++|++| +++..|++.+
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9997 9999999999999999999999999987899999999999874 459999999997 9999998754
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=294.36 Aligned_cols=143 Identities=35% Similarity=0.517 Sum_probs=135.6
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL 99 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l 99 (291)
+++++++++|++.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+ ..++|+||
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~--~~i~~~~~-------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST--VKIGYFEQ-------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe--EEEEEEcc--------
Confidence 46799999998888999999999999999999999999999999999999999999999996 46999998
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
||+||+||++|||||+.+|+++||||||++||+.++..
T Consensus 71 ------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~ 108 (144)
T cd03221 71 ------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEA 108 (144)
T ss_pred ------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHH
Confidence 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 180 IWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 180 i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
+.+.|+++ +.|+|++||+++++.. ||++++|++|+
T Consensus 109 l~~~l~~~---~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 109 LEEALKEY---PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHc---CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999987 4699999999999966 99999999885
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=351.64 Aligned_cols=187 Identities=29% Similarity=0.460 Sum_probs=161.7
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
.++++|++++|++ +++|+|+||++++||.++|+||||||||||+|+|+|+++|++|+|.++|.++ +.++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 6899999999975 4799999999999999999999999999999999999999999999999986 3599
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CC----CCcCcCChhHHHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AK----KIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~----~~~~~LSgGqkQrv~iAra 155 (291)
|++|++.+|+. |++||+.++.. ..++ +.+.++++..++.+ .+ ....+||||||||++||||
T Consensus 400 ~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP--DASD----AEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred EEcCCCcccCc-CHHHHHhccCC--CCCH----HHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 99999999985 99999987532 1222 23445555555421 22 2345799999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
|+++|+++|||||||+||+.+.+.+.+.|.++. +++|+|++||+++.++.||++++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999985 579999999999999889999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=352.84 Aligned_cols=194 Identities=23% Similarity=0.325 Sum_probs=167.7
Q ss_pred ceEEEEeEEEEECC-----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 18 HSVAVTSAYKKIGN-----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 46899999999975 2599999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCC------CcCcCChhHHHHHHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK------IVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~------~~~~LSgGqkQrv~iAral 156 (291)
+.++|++|++.+|.. |+++|.. .+..++++.++++.+++.+ .++ ....||||||||++||||+
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~~---------~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRal 485 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDEG---------EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAW 485 (555)
T ss_pred hhCcEEccChhhhhh-hhhcccc---------cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHH
Confidence 348999999999986 7888731 1122345677888888753 221 2367999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHH-HhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLK-EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
+.+|++|||||||++||+.+++.+.+.+. .++.+++|+|++||+++.+..||+|++|++|++++.
T Consensus 486 l~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 486 LEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999998664 455568999999999998888999999999999865
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=354.63 Aligned_cols=203 Identities=24% Similarity=0.292 Sum_probs=169.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
||++++++++|+++++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|. ..++|++|.+.....
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--LIVARLQQDPPRNVE 80 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--CEEEEeccCCCCCCC
Confidence 688999999999999999999999999999999999999999999999999999999999874 347899987644333
Q ss_pred CCHHHHHHHh------------------------------ccc----cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCCh
Q psy6612 99 LSIRETFRYY------------------------------GYM----FDMTDDQIETRSKEILKLLELPPAKKIVGALSG 144 (291)
Q Consensus 99 ltv~enl~~~------------------------------~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 144 (291)
.++.+++... ... ..........++.++++.+|+. .++++++|||
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~LSg 159 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD-PDAALSSLSG 159 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC-CCCchhhcCH
Confidence 4666654210 000 0000112345678889999986 4789999999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE-Ee
Q psy6612 145 GQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG-RL 222 (291)
Q Consensus 145 GqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~-~~ 222 (291)
||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||+||||.+++.. ||++++|++|+++. .|
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g 236 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMATRIVDLDRGKLVSYPG 236 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999883 599999999999976 99999999999974 57
Q ss_pred chhHH
Q psy6612 223 VHHDI 227 (291)
Q Consensus 223 ~~~~~ 227 (291)
..+..
T Consensus 237 ~~~~~ 241 (635)
T PRK11147 237 NYDQY 241 (635)
T ss_pred CHHHH
Confidence 66554
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=382.81 Aligned_cols=206 Identities=21% Similarity=0.316 Sum_probs=178.7
Q ss_pred ccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 16 VKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
.+..|+++|++++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++ +
T Consensus 1231 ~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHh
Confidence 3446999999999953 5799999999999999999999999999999999999999999999999987 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCC----cCcCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKI----VGALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~----~~~LSgGqkQrv~i 152 (291)
+++||||+|.+|+. |++||+.++. ..+++ .+.++++..++.+ .+.. -.+||||||||++|
T Consensus 1311 ~i~iVpQdp~LF~g-TIr~NL~~~~---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1311 VLSIIPQSPVLFSG-TVRFNIDPFS---EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred hcEEECCCCeeeCc-cHHHHcCCCC---CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 59999999999997 9999997642 22333 3444555554421 2333 34799999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 1383 ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~ 1459 (1495)
T PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSR 1459 (1495)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999875 47999999999999999999999999999999999988753
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=385.94 Aligned_cols=204 Identities=23% Similarity=0.342 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++ ++
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~ 1314 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKV 1314 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhc
Confidence 456999999999964 4799999999999999999999999999999999999999999999999987 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iA 153 (291)
|++|||+|.+|.. |++||+.++. ..+++ .+.++++..++. . .+..+ .+||||||||++||
T Consensus 1315 IsiVpQdp~LF~G-TIreNLd~~~---~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLA 1386 (1622)
T PLN03130 1315 LGIIPQAPVLFSG-TVRFNLDPFN---EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLA 1386 (1622)
T ss_pred cEEECCCCccccc-cHHHHhCcCC---CCCHH----HHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHH
Confidence 9999999999997 9999997643 22333 344455554442 1 23333 47999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++||||||||+||+.+.+.+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++.+
T Consensus 1387 RALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999975 4799999999999999999999999999999999998865
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=380.80 Aligned_cols=197 Identities=26% Similarity=0.422 Sum_probs=166.5
Q ss_pred eEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE-CCEec---------Ce
Q psy6612 19 SVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-SFRQI---------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~-~g~~~---------~~ 85 (291)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++ +.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 5899999999974 36999999999999999999999999999999999999999999999 45655 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhcccc----------CC-----------------------------------------
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMF----------DM----------------------------------------- 114 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~----------~~----------------------------------------- 114 (291)
||||+|++.+|+. |++||+.++.... +.
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 9999999999985 9999998853100 00
Q ss_pred ChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH
Q psy6612 115 TDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 115 ~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~ 182 (291)
......+.+.++++.+++++ ......+||||||||++|||||+++|++|||||||++||+.++..+.+
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~ 620 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQK 620 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 00011234556666665531 135567899999999999999999999999999999999999999999
Q ss_pred HHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 183 RLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 183 ~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.|+++++ +|+|+|++||+++.+..||+|++|++|
T Consensus 621 ~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 621 TINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 9999975 589999999999999779999999986
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=348.80 Aligned_cols=176 Identities=29% Similarity=0.440 Sum_probs=151.8
Q ss_pred ceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC--------eEEE
Q psy6612 18 HSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------DIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------~ig~ 88 (291)
..++++|++++|++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.+++ .++|
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~ 412 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISV 412 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEE
Confidence 35899999999975 57999999999999999999999999999999999999999999999999874 7999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral 156 (291)
|||++.+|+. |++||+.++.. ..++ +++.++++..+++ + .+..+ ..||||||||++|||||
T Consensus 413 V~Q~~~lF~~-TI~eNI~~g~~--~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARal 485 (529)
T TIGR02868 413 FAQDAHLFDT-TVRDNLRLGRP--DATD----EELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARAL 485 (529)
T ss_pred EccCcccccc-cHHHHHhccCC--CCCH----HHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHH
Confidence 9999999987 99999987531 1222 3445556655552 1 24443 45999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
+.+|++||||||||+||+++.+.+.+.|.++. +++|+|++||++
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 99999999999999999999999999999874 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=298.52 Aligned_cols=146 Identities=25% Similarity=0.391 Sum_probs=135.7
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHH
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR 102 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~ 102 (291)
.|++++|+++.+++++ |++++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ++|++|++.
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---PVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE---EEEEcccCC--------
Confidence 5789999999999984 9999999999999999999999999999999999999999964 889988642
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~ 182 (291)
||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 72 ---------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~ 112 (177)
T cd03222 72 ---------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAAR 112 (177)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHHHhHhCC-cEEEEEccCHhHHhh-hCeEEEEeCCEEE
Q psy6612 183 RLKEMALNG-KTIIITTHYIEEAKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 183 ~l~~l~~~g-~tii~~tHd~~~~~~-~d~i~~l~~G~i~ 219 (291)
.|+++++++ .|||++||+++++.. ||++++|+++-.+
T Consensus 113 ~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 113 AIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999997664 899999999999976 9999999987554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=351.43 Aligned_cols=199 Identities=23% Similarity=0.340 Sum_probs=168.8
Q ss_pred ceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 18 HSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 18 ~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.+|+++++++.|+ ++.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+||++|++.
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--~~igyv~Q~~~-- 582 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQHHV-- 582 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc--eeEEEEecccc--
Confidence 5799999999996 457999999999999999999999999999999999999999999999764 46999999863
Q ss_pred CCCCHHHHHHHh-cccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 97 GELSIRETFRYY-GYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 97 ~~ltv~enl~~~-~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+.+++.++..+. ...+ +.. .+.+.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 583 ~~l~~~~~~~~~~~~~~~~~~----~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 583 DGLDLSSNPLLYMMRCFPGVP----EQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccCCcchhHHHHHHHhcCCCC----HHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 345565554322 1111 111 346778999999963 58899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDI 227 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~ 227 (291)
|+.++..+.+.|.++ .| |||++|||++++.. ||++++|++|+++ ..|+.++.
T Consensus 659 D~~s~~~l~~~L~~~--~g-tvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 659 DLDAVEALIQGLVLF--QG-GVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CHHHHHHHHHHHHHc--CC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999998888775 34 99999999999976 9999999999998 56766554
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=378.55 Aligned_cols=207 Identities=20% Similarity=0.291 Sum_probs=180.0
Q ss_pred cccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 15 EVKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
..+..|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++
T Consensus 1280 p~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 34557999999999964 4799999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRIS 151 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~ 151 (291)
++++||||+|.+|++ |+++|+..+. ..+++ .+.++++.+++. . .+..+ ..||||||||++
T Consensus 1360 ~~i~iVpQdp~LF~g-TIr~NLdp~~---~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~ 1431 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSG-SLRMNLDPFS---QYSDE----EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVC 1431 (1522)
T ss_pred hcCeEECCCCcccCc-cHHHHcCccc---CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHH
Confidence 359999999999998 9999997432 22333 344555555542 1 34444 469999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||+++|++||||||||+||+++...+.+.|++.. +++|+|+|+|+++.+..||+|++|++|++++.|+++++.+.
T Consensus 1432 LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1432 LARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999875 47999999999999999999999999999999999988653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=361.16 Aligned_cols=210 Identities=29% Similarity=0.474 Sum_probs=181.5
Q ss_pred ccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 16 VKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
++.-++++|+++.|.. .++|+|+||++++|+.+||+||+||||||.+.+|-+++.|++|.|.+||.++
T Consensus 984 ~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR 1063 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLR 1063 (1228)
T ss_pred ceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHH
Confidence 4456899999999964 5699999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH-HHH--cCCCC-CCCCcC----cCChhHHHHHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI-LKL--LELPP-AKKIVG----ALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~-l~~--~~l~~-~~~~~~----~LSgGqkQrv~iAra 155 (291)
+++|.|.|+|.||.. |++||+.|+.. ..+..++.+.++.+ +.. .+|++ .|.+++ +||||||||+|||||
T Consensus 1064 ~~i~lVsQEP~LF~~-TIrENI~YG~~--~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARA 1140 (1228)
T KOG0055|consen 1064 KQIGLVSQEPVLFNG-TIRENIAYGSE--EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARA 1140 (1228)
T ss_pred HhcceeccCchhhcc-cHHHHHhccCC--CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHH
Confidence 469999999999986 99999998721 23444433332211 111 13443 466665 799999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++||++|||||.||+||.++.+.+.+.|.+.. .|+|.|+|.|.++.++.||.|+|+++|+|+++|+++++.+
T Consensus 1141 ilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1141 ILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred HHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHh
Confidence 999999999999999999999999999999986 5899999999999999999999999999999999998876
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=304.58 Aligned_cols=196 Identities=23% Similarity=0.380 Sum_probs=181.4
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcC-CCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ-ELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q-~~~l~~~ltv~enl~~~~ 109 (291)
..++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+ ++++.. ...+.|.+|.+||+.+.+
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~----v~~li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK----VAPLIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce----EehhhhcccCCCcccchHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999997 443332 245667799999999999
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.+.++++++++++++++.++-.|.+ .++|++.+|.||+-|+++|.|...+|++||+||-.+.-|+..+++-.+.+.++.
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999966 799999999999999999999999999999999999999999999999999998
Q ss_pred hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 189 LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 189 ~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++++|||++|||++.++. ||++++|++|++...|+++++...
T Consensus 195 ~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 195 EKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 778999999999999977 999999999999999999988764
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=376.42 Aligned_cols=203 Identities=21% Similarity=0.338 Sum_probs=178.0
Q ss_pred ceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
..|+++|++++|.+ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++ +.|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999964 4599999999999999999999999999999999999999999999999987 459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCc----CcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIV----GALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~----~~LSgGqkQrv~iAr 154 (291)
|||||+|.+|+. |+++|+..+. ..++ +.+.++++.+++.+ .+..+ .+||||||||++|||
T Consensus 1387 ~iVpQdp~LF~g-TIreNIdp~~---~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLAR 1458 (1560)
T PTZ00243 1387 SMIPQDPVLFDG-TVRQNVDPFL---EASS----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458 (1560)
T ss_pred eEECCCCccccc-cHHHHhCccc---CCCH----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHH
Confidence 999999999987 9999996432 2233 34556666666531 24344 469999999999999
Q ss_pred HHhcC-CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHN-PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++ |++||||||||+||+.+.+.+.+.|++.. +++|||+|+|+++.+..||+|++|++|++++.|+++++.+
T Consensus 1459 ALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred HHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99996 89999999999999999999999999875 4699999999999999999999999999999999999875
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=297.77 Aligned_cols=213 Identities=25% Similarity=0.345 Sum_probs=189.9
Q ss_pred ceEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCccEEEECCEec----------C
Q psy6612 18 HSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQI----------S 84 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~G~I~~~g~~~----------~ 84 (291)
.||+++|++.+.+++ .+|++|||+|++||+++|+||||||||||.++|+|.- ++++|+|.++|+++ .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 478999999999985 9999999999999999999999999999999999985 67999999999998 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCC---hHHHHHHHHHHHHHcCCCC--CCCCcC-cCChhHHHHHHHHHHHhc
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMT---DDQIETRSKEILKLLELPP--AKKIVG-ALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~--~~~~~~-~LSgGqkQrv~iAral~~ 158 (291)
.|.+.||.|.-++..++.+++.......... ..+..+.+.+.++.++++. ++|.++ .+|||||+|..|+.+++.
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l 161 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL 161 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence 4889999999999999999988654332111 2355677888999999975 688887 499999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
+|++.|||||-||||..+-+.+.+.+.++++.|.+++++||.-..+.. .|++.+|.+|+|+.+|.+ ++...+
T Consensus 162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el~~~l 235 (251)
T COG0396 162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-ELAEEL 235 (251)
T ss_pred CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HHHHHH
Confidence 999999999999999999999999999999889999999999999976 599999999999999998 665543
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=350.22 Aligned_cols=193 Identities=22% Similarity=0.340 Sum_probs=164.7
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
..+++++|+++.|. ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.+++. +.++|+||++.+
T Consensus 449 ~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~--~~i~~v~Q~~~l 526 (659)
T TIGR00954 449 DNGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAK--GKLFYVPQRPYM 526 (659)
T ss_pred CCeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCC--CcEEEECCCCCC
Confidence 45799999999994 568999999999999999999999999999999999999999999998763 579999999999
Q ss_pred CCCCCHHHHHHHhccccCCC-hHHHHHHHHHHHHHcCCCC-CCCC---------cCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 96 HGELSIRETFRYYGYMFDMT-DDQIETRSKEILKLLELPP-AKKI---------VGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~-~~~~---------~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
++. |++||+.+........ .....+++.++++.+++++ .+++ .++||||||||++|||||+++|+++|
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887 9999998753221110 1111345677888888864 3333 36899999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
|||||++||+.++..+.+.+++. |.|+|++||+++.+..||++++|+.
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999999999999999988763 7999999999999888999999963
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=368.56 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=181.2
Q ss_pred eEEEEeEEEEEC-------------CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec
Q psy6612 19 SVAVTSAYKKIG-------------NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-------------~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~ 83 (291)
.++.+|+++... ++.+|+|+|+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 478889888762 34799999999999999999999999999999999999763 789999999765
Q ss_pred ------CeEEEEcCCCCCCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC-CCCCc-----CcCChhHHH
Q psy6612 84 ------SDIGYMPQELALHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP-AKKIV-----GALSGGQQR 148 (291)
Q Consensus 84 ------~~ig~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkQ 148 (291)
+.+||++|++.+++.+||+||+.|...++ ..+.++..+.++++++.++|.+ .++.+ ..|||||||
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerk 1026 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRK 1026 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHH
Confidence 34899999999999999999999865433 2233445567889999999976 56665 589999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH-H-hhhCeEEEEeC-CEEEEEechh
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-A-KGAHNIGLMRD-DQYIGRLVHH 225 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~-~-~~~d~i~~l~~-G~i~~~~~~~ 225 (291)
||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++. + ..||++++|++ |+++..|+..
T Consensus 1027 RvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1027 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9999999999999999999999999999999999999998889999999999984 5 45999999996 8999999864
Q ss_pred H
Q psy6612 226 D 226 (291)
Q Consensus 226 ~ 226 (291)
+
T Consensus 1107 ~ 1107 (1470)
T PLN03140 1107 R 1107 (1470)
T ss_pred c
Confidence 3
|
|
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=359.53 Aligned_cols=212 Identities=33% Similarity=0.579 Sum_probs=201.3
Q ss_pred ceEEEEeEEEEECCEe-eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eE
Q psy6612 18 HSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~-~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~i 86 (291)
..+.+++++|.|+.+. |++++||.|++||+.|++|||||||||++++|+|..+|++|+++++|.++. .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 5688999999998877 999999999999999999999999999999999999999999999998762 39
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
||+||...+.+.+|.+|++.+++++++++..+.++.++.+++.+++.+ ++++++.+|||+|+|+++|.|++.+|++++|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L 722 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL 722 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence 999999999999999999999999999998899999999999999965 8999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|+||.+++.+++++.+++++|+.||++||.|++++. |||+.+|.+|++..-|+++++.+
T Consensus 723 DEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 723 DEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 99999999999999999999999877799999999999987 99999999999999999987654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=368.11 Aligned_cols=204 Identities=24% Similarity=0.376 Sum_probs=178.3
Q ss_pred ccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 16 VKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
....|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|+|+++ ++|+|.+||.++ +
T Consensus 1214 ~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHh
Confidence 3457999999999964 689999999999999999999999999999999999997 799999999987 4
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--------CCCCcC----cCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--------AKKIVG----ALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~----~LSgGqkQrv~i 152 (291)
+++|+||+|.+|+. |+++|+.... ..++ +.+.++++.+++.. .+..++ .||||||||++|
T Consensus 1293 ~is~IpQdp~LF~G-TIR~NLdp~~---~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~L 1364 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSG-TFRKNLDPYE---QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCL 1364 (1490)
T ss_pred ceEEEeCCCccCcc-CHHHHhCccc---CCCH----HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHH
Confidence 69999999999997 9999996432 1222 34556677666631 233343 699999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+++|+|||||||||+||+.+...+.+.|++.. +++|||++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 1365 ARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1365 ARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999999999999999999999999999875 4699999999999999999999999999999999998874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=288.84 Aligned_cols=213 Identities=22% Similarity=0.316 Sum_probs=188.1
Q ss_pred ceEEEEeEEEEECC---------EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----
Q psy6612 18 HSVAVTSAYKKIGN---------HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~---------~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----- 83 (291)
..|+++|++|.|.. ..+++.|||++++|+.+|++|.||||||||.|+|+|+++|++|+|.+||+.+
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 45678889998842 3599999999999999999999999999999999999999999999999876
Q ss_pred ----CeEEEEcCCCC--CCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCC--CCCCCcCcCChhHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELA--LHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELP--PAKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 84 ----~~ig~v~q~~~--l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~LSgGqkQrv~iAr 154 (291)
+.|-++||+|+ +.|.+.+.+.+..+.++. .+...+..+++-+-+..+|+- +++-++..||-||||||++||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 46999999985 567777777766655442 345566677888899999993 378899999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+.+|+++|.||..++||...+.++.+++.++.+ .|.+-|.|+.++..++. +|.|++|+.|++++.|++.++...
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~ 240 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcC
Confidence 99999999999999999999999999999999985 59999999999999988 999999999999999999888654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=340.74 Aligned_cols=183 Identities=25% Similarity=0.377 Sum_probs=159.9
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEec-------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-----------LSFRQI------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~------- 83 (291)
++++++||++ .+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. ++|.++
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 3489999874 6999999 9999999999999999999999999999999999997 888764
Q ss_pred ----CeEEEEcCCCCCCCC---CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGE---LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~---ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
.++++.+|....++. .|+.|++.+. +...++.++++.+++.. .++++.+|||||||||+||+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 135666665444333 2999988631 23456788999999976 689999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
|+.+|++|||||||++||+.++..+.+.|+++++ |+|||++|||++++.. ||++++|.++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999987 9999999999999976 9999999863
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=281.12 Aligned_cols=146 Identities=40% Similarity=0.659 Sum_probs=136.0
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQE 92 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~ 92 (291)
++++++.|.++.+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++ ..++|+||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 57899999888999999999999999999999999999999999999999999999999864 23666666
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
||+||+||++||||++.+|++++|||||+||
T Consensus 81 -------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l 111 (157)
T cd00267 81 -------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGL 111 (157)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+.++..+.+.|.++.+.+.|++++||+++++.. ||++++|++|+
T Consensus 112 D~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 112 DPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999987667899999999999987 79999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-41 Score=288.18 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=133.0
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCCCCCCHHHHHH
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~~~ltv~enl~ 106 (291)
.+++|+|+||++++|++++|+||||||||||||++. +++|++.++|... .+++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH---------------
Confidence 367999999999999999999999999999999985 3699999987621 13555554
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC--CCEEEEcccCCCCCHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN--PKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~--p~llllDEPtsgLD~~~~~~i~~ 182 (291)
.++++.+++.. .++++.+||+|||||++|||||+.+ |+++||||||++||+.++..+.+
T Consensus 68 -----------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~ 130 (176)
T cd03238 68 -----------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE 130 (176)
T ss_pred -----------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 24678888853 6889999999999999999999999 99999999999999999999999
Q ss_pred HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 183 ~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
.|+++++.|.|||++||+++++..||++++|.+|.
T Consensus 131 ~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 131 VIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999877899999999999986799999997754
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=328.18 Aligned_cols=205 Identities=27% Similarity=0.355 Sum_probs=175.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
.+|+++++++.|+++++|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+. .++||++|++.+.+
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~--~~v~~l~Q~~~~~~ 79 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG--LRVGYLSQEPPLDP 79 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC--ceEEEeCCCCCcCC
Confidence 4688999999999999999999999999999999999999999999999999999999998653 46999999999999
Q ss_pred CCCHHHHHHHhccc-cC-----------------------------CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHH
Q psy6612 98 ELSIRETFRYYGYM-FD-----------------------------MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQ 147 (291)
Q Consensus 98 ~ltv~enl~~~~~~-~~-----------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk 147 (291)
..||.+.+.-...- +. +..-..+.++..++..+|+...++++++||||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 99999987542110 00 0001123456677888888655899999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechh
Q psy6612 148 RRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHH 225 (291)
Q Consensus 148 Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~ 225 (291)
.||+||+||+.+|++|||||||++||..+...+.+.|.++ .| |+|+||||-.++.. |++|+-+++|++. ..|..+
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 9999999999999999999999999999999999999986 46 99999999999977 9999999999875 455554
Q ss_pred HH
Q psy6612 226 DI 227 (291)
Q Consensus 226 ~~ 227 (291)
..
T Consensus 237 ~~ 238 (530)
T COG0488 237 SY 238 (530)
T ss_pred HH
Confidence 43
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=361.42 Aligned_cols=199 Identities=19% Similarity=0.200 Sum_probs=171.6
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC----CCCccEEEECCEec--------CeEEEEcCCCCCCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN----TLDAGTIKLSFRQI--------SDIGYMPQELALHGE 98 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ 98 (291)
.+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++ +.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 367999999999999999999999999999999999996 57899999999865 249999999999999
Q ss_pred CCHHHHHHHhcccc-------CCChHHHHHH-HHHHHHHcCCCC-CCCC-----cCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 99 LSIRETFRYYGYMF-------DMTDDQIETR-SKEILKLLELPP-AKKI-----VGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 99 ltv~enl~~~~~~~-------~~~~~~~~~~-~~~~l~~~~l~~-~~~~-----~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+||+||+.|....+ +.++++..++ ++++++.+||.+ .+++ ++.|||||||||+||+||+.+|++++
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999865432 1223332333 466899999975 4544 56799999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCH-hHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYI-EEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~-~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+.+.|+++++ .|+|||+++|++ +++.. +|++++|++|+++..|++++..+
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~ 300 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQ 300 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHH
Confidence 9999999999999999999999986 489999999997 56655 99999999999999999877643
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=291.20 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=174.5
Q ss_pred eEEEEeEEEEEC-----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------
Q psy6612 19 SVAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84 (291)
Q Consensus 19 ~l~~~~l~~~~~-----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------- 84 (291)
|+.+.|+.+.|. .++||+++|++|++|+|+.++|.||||||||+++|+|-+.|++|+|.++|.++.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 345667777764 367999999999999999999999999999999999999999999999999983
Q ss_pred eEEEEcCCC--CCCCCCCHHHHHHHhccc---cCCCh---HHHHHHHHHHHHHcCC--CC-CCCCcCcCChhHHHHHHHH
Q psy6612 85 DIGYMPQEL--ALHGELSIRETFRYYGYM---FDMTD---DQIETRSKEILKLLEL--PP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 85 ~ig~v~q~~--~l~~~ltv~enl~~~~~~---~~~~~---~~~~~~~~~~l~~~~l--~~-~~~~~~~LSgGqkQrv~iA 153 (291)
.++-|||+| ..++.||+.||+.++... ++... ...++...+.+..+++ +. .+.+++-|||||||-++++
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~ 160 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLL 160 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHH
Confidence 378899998 579999999999875321 22222 2223344455666655 44 6889999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechh
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~ 225 (291)
.|-++.|++|+|||-|++|||.+...+++.-.++.+ .+.|.+||||+|+.+-. .+|.++|++|+|+.+..-+
T Consensus 161 MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~ 234 (263)
T COG1101 161 MATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGE 234 (263)
T ss_pred HHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccc
Confidence 999999999999999999999999999999999975 47899999999999955 8999999999999876543
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=283.69 Aligned_cols=210 Identities=27% Similarity=0.449 Sum_probs=178.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe---c----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ---I---------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~---------- 83 (291)
++.|++.+++|.||.....+||||++.+||+.||+|++|||||||++||++-+.|++|+|.+.-++ .
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 456788999999999999999999999999999999999999999999999999999999985422 1
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHH-----HhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHH
Q psy6612 84 -----SDIGYMPQELA--LHGELSIRETFR-----YYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRR 149 (291)
Q Consensus 84 -----~~ig~v~q~~~--l~~~ltv~enl~-----~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQr 149 (291)
..-|+|-|+|. +-...+..-|+- .+.+.|+ .++..+.++++.+.++. .|..|..+|||||||
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG----~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQR 159 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG----NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQR 159 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh----hHHHHHHHHHHhcccCcccccCcccccchHHHHH
Confidence 24799999984 333334444442 2223332 35667888999999864 578899999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+.|||-|+..|+++++||||.|||...+..++++++.+. +-|.+++++|||+..+.. ++|..+|++|+++++|-.+.+
T Consensus 160 LQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrv 239 (258)
T COG4107 160 LQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRV 239 (258)
T ss_pred HHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccccccc
Confidence 999999999999999999999999999999999999997 459999999999999977 999999999999999877666
Q ss_pred HHH
Q psy6612 228 VES 230 (291)
Q Consensus 228 ~~~ 230 (291)
..+
T Consensus 240 LDD 242 (258)
T COG4107 240 LDD 242 (258)
T ss_pred ccC
Confidence 544
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=286.20 Aligned_cols=184 Identities=26% Similarity=0.343 Sum_probs=166.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC--------eEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------DIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------~ig~v~ 90 (291)
+++.++++...+...++.++||++.+||++.|.||||||||||||+|+|+..|++|+|.|+|.++. .+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 466789999999999999999999999999999999999999999999999999999999988762 356788
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
..+.+-+.+|++||+.|+..+++.. ....+.++++.+||.. .|.|+++||-|||+||+|||-++..++++||||||
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~---~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ 158 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSG---NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF 158 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCC---chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence 8889999999999999988776631 1246778899999976 69999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
++||......+-.++..-+.+|..||++||+.--+.
T Consensus 159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999998888889999999875553
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=316.07 Aligned_cols=209 Identities=25% Similarity=0.453 Sum_probs=178.0
Q ss_pred cccceEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------
Q psy6612 15 EVKHSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------- 83 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------- 83 (291)
+.+..|.++++++-= ..+++++++||++.+||.+|||||||||||||.|+|.|..+|++|.|++||-++
T Consensus 330 ~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 330 APQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhc
Confidence 445578899988744 246899999999999999999999999999999999999999999999999877
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-------CCCC-CCCCcC----cCChhHHHHHH
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-------ELPP-AKKIVG----ALSGGQQRRIS 151 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~-~~~~~~----~LSgGqkQrv~ 151 (291)
+.|||+||+-.||+. |+.|||.-+.. ..+.+ ++-++.+.- .++. .+..++ .||||||||++
T Consensus 410 ~hiGYLPQdVeLF~G-TIaeNIaRf~~--~~d~~----kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIa 482 (580)
T COG4618 410 RHIGYLPQDVELFDG-TIAENIARFGE--EADPE----KVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIA 482 (580)
T ss_pred cccCcCcccceecCC-cHHHHHHhccc--cCCHH----HHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHH
Confidence 569999999999998 99999964331 11111 222222222 2333 456664 59999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||..+|.+++||||-|+||......+.+.|.+.+++|.|+|++||.++.+..+|++.+|++|++..-|+.+++...
T Consensus 483 LARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 483 LARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887664
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=356.47 Aligned_cols=203 Identities=23% Similarity=0.393 Sum_probs=170.5
Q ss_pred eEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 19 SVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 19 ~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----~i~yv~Q~~~l~ 711 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----SVAYVPQQAWIQ 711 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----EEEEEcCCcccc
Confidence 6999999999974 5799999999999999999999999999999999999999999999987 499999999887
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHH--HHHHHcCC-CC-----CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSK--EILKLLEL-PP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~--~~l~~~~l-~~-----~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
+ .|++||+.++... ..+..++.++ .+.+.++. +. ...+..+||||||||++||||++.+|+++|||||
T Consensus 712 ~-~Ti~eNI~~g~~~---~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp 787 (1522)
T TIGR00957 712 N-DSLRENILFGKAL---NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP 787 (1522)
T ss_pred C-CcHHHHhhcCCcc---CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6 5999999875321 2222221111 11222222 11 2456778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhH--hCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMA--LNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~--~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++||+.+.+.+++.+.+.. .+++|+|++||+++.+..||++++|++|+++..|+++++.+
T Consensus 788 ~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 788 LSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred ccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHh
Confidence 99999999999999997542 35799999999999998899999999999999999888764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=356.22 Aligned_cols=198 Identities=20% Similarity=0.386 Sum_probs=169.3
Q ss_pred eEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEECCEecCeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~~ig~v~q~~~ 94 (291)
.++++|++++|+. +++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+.+ .|+||+|+|.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----~Iayv~Q~p~ 689 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----TVAYVPQVSW 689 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC----eEEEEcCccc
Confidence 5899999999963 579999999999999999999999999999999999999999 9999865 5999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHHhcCCCE
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral~~~p~l 162 (291)
+++. |++|||.|+.. .+ +++..++++.+++. . .+..+ ..||||||||++||||+..+|++
T Consensus 690 Lfng-TIreNI~fg~~---~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 690 IFNA-TVRDNILFGSP---FD----PERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred cCCC-CHHHHHhCCCc---cc----HHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 9986 99999998642 12 23445555555542 1 23334 35999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHH-HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWD-RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~-~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+||+++.+.+.+ .+..+. +++|+|++||+++.+..||+|++|++|++++.|+.+++.+
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 99999999999999888764 566554 5799999999999988899999999999999999988764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=354.95 Aligned_cols=203 Identities=23% Similarity=0.328 Sum_probs=174.1
Q ss_pred EEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec------CeEEEEcCCCCCC
Q psy6612 26 YKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI------SDIGYMPQELALH 96 (291)
Q Consensus 26 ~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~------~~ig~v~q~~~l~ 96 (291)
++++ ++.+|+|+|+.+++||+++|+||||||||||||+|+|+++|+ +|+|.++|.++ +.++|++|++.++
T Consensus 173 ~k~~-~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~ 251 (1470)
T PLN03140 173 AKKT-KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHV 251 (1470)
T ss_pred CCCc-cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCC
Confidence 3444 477999999999999999999999999999999999999998 99999999875 4599999999999
Q ss_pred CCCCHHHHHHHhccccCC----------ChHHH------------------------HHHHHHHHHHcCCCC-C-----C
Q psy6612 97 GELSIRETFRYYGYMFDM----------TDDQI------------------------ETRSKEILKLLELPP-A-----K 136 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~~l~~-~-----~ 136 (291)
+.+||+|++.|.....+. .+++. ...++++++.+||++ . +
T Consensus 252 ~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~ 331 (1470)
T PLN03140 252 GVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD 331 (1470)
T ss_pred CcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence 999999999987544321 11110 113467899999964 3 5
Q ss_pred CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCH-hHHhh-hCeEEEE
Q psy6612 137 KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYI-EEAKG-AHNIGLM 213 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~-~~~~~-~d~i~~l 213 (291)
+.++.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|||+++|++ +++.. ||++++|
T Consensus 332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence 56789999999999999999999999999999999999999999999999975 589999999996 46654 9999999
Q ss_pred eCCEEEEEechhHHHH
Q psy6612 214 RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 214 ~~G~i~~~~~~~~~~~ 229 (291)
++|+++..|+.++..+
T Consensus 412 ~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 412 SEGQIVYQGPRDHILE 427 (1470)
T ss_pred eCceEEEeCCHHHHHH
Confidence 9999999999877654
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=326.91 Aligned_cols=210 Identities=30% Similarity=0.484 Sum_probs=185.8
Q ss_pred EEEEeEEEEEC-----CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC---CccEEEECCEec------Ce
Q psy6612 20 VAVTSAYKKIG-----NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---DAGTIKLSFRQI------SD 85 (291)
Q Consensus 20 l~~~~l~~~~~-----~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~------~~ 85 (291)
+..++++.... .+++|++||..+++||+.||+||+||||||||++|+|.... .+|+|.+||+.. +.
T Consensus 26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~ 105 (613)
T KOG0061|consen 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI 105 (613)
T ss_pred eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence 44556665552 37899999999999999999999999999999999999874 799999999654 45
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHHHHHHcCCCC-CCCCcC-----cCChhHHHHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKEILKLLELPP-AKKIVG-----ALSGGQQRRISFAVSL 156 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~-----~LSgGqkQrv~iAral 156 (291)
.|||.|+..+++.+||+|++.|.+.++- .+.++.+++++++++.+|+.. +|+.++ .+|||||+||+||.-|
T Consensus 106 s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El 185 (613)
T KOG0061|consen 106 SGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL 185 (613)
T ss_pred eEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH
Confidence 8999999999999999999999876642 355778889999999999986 677776 5999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH-H-hhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-A-KGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|.+|+|||||+|||..+..++.+.|++++++|+|||++-|.+.. + ...|++++|.+|+++..|++++..+
T Consensus 186 l~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 186 LTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHH
Confidence 99999999999999999999999999999999889999999999865 3 4499999999999999999876544
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=335.13 Aligned_cols=205 Identities=22% Similarity=0.255 Sum_probs=155.4
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC---CCCccEEEECCEec-----------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN---TLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~~g~~~----------- 83 (291)
.+|+++|++++|+++.+|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|.+.++.+
T Consensus 176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v 255 (718)
T PLN03073 176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV 255 (718)
T ss_pred eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence 3689999999999889999999999999999999999999999999999964 46677775433211
Q ss_pred ------------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH-------------------HHHHHHHHHHHHcCC
Q psy6612 84 ------------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDD-------------------QIETRSKEILKLLEL 132 (291)
Q Consensus 84 ------------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~l 132 (291)
..++|++|++.+... ++.++.... ...+.+.+ ..+.++.+++..+|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 256 LNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGA-NKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccc-cccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 002333333221110 111110000 00011111 234566677888888
Q ss_pred C-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCe
Q psy6612 133 P-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHN 209 (291)
Q Consensus 133 ~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~ 209 (291)
. . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||.+++.. ||+
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCCE
Confidence 5 3 57899999999999999999999999999999999999999999999999887 6799999999999976 999
Q ss_pred EEEEeCCEEE-EEechhHH
Q psy6612 210 IGLMRDDQYI-GRLVHHDI 227 (291)
Q Consensus 210 i~~l~~G~i~-~~~~~~~~ 227 (291)
+++|++|++. ..|..+.+
T Consensus 411 i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 411 ILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCEEEEeCCCHHHH
Confidence 9999999996 56665543
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=314.60 Aligned_cols=214 Identities=24% Similarity=0.440 Sum_probs=183.4
Q ss_pred cccccceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 13 IIEVKHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.-.-...++++|+++.|. ++++|+||||++.+|+.+||+||+|+||||++|++..+...++|.|++||+++
T Consensus 531 l~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SL 610 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSL 610 (790)
T ss_pred ccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHH
Confidence 444456799999999996 58999999999999999999999999999999999999999999999999998
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH---HHHcCCCC-CCCCcC----cCChhHHHHHHHHH
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI---LKLLELPP-AKKIVG----ALSGGQQRRISFAV 154 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~-~~~~~~----~LSgGqkQrv~iAr 154 (291)
+.||.||||..+|++ |+..|+.|+.. ..+.++..+.+..+ -+.+++++ .+.+++ .|||||||||+|||
T Consensus 611 Rs~IGVVPQDtvLFNd-TI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 611 RSSIGVVPQDTVLFND-TILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HHhcCcccCcceeecc-eeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 359999999999987 99999987532 22334433333222 12345544 355555 59999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++.+|.+++|||.||+||..+.+.+...|.+++. +.|-|++.|.++.+-.||.|+++++|+|++.|.++++...
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999999984 6899999999999999999999999999999999988654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=354.74 Aligned_cols=198 Identities=20% Similarity=0.375 Sum_probs=166.6
Q ss_pred eEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-ECCEecCeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-LSFRQISDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-~~g~~~~~ig~v~q~~~ 94 (291)
.++++|++++|++ +++|+|+||+|++||.++|+||+|||||||+++|+|.++|++|.+. +. ..|+||+|+|.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~----~~Iayv~Q~p~ 689 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR----GSVAYVPQVSW 689 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEec----CcEEEEcCccc
Confidence 5899999999964 5799999999999999999999999999999999999999998663 32 46999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhHHHHHHHHHHHhcCCCE
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGqkQrv~iAral~~~p~l 162 (291)
+|+. |++|||.|+.. .++ ++..++++.+++. + .+..+ ..||||||||++||||+..+|++
T Consensus 690 Lf~g-TIreNI~fg~~---~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 761 (1495)
T PLN03232 690 IFNA-TVRENILFGSD---FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI 761 (1495)
T ss_pred cccc-cHHHHhhcCCc---cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 9986 99999988642 222 2344455554442 1 23333 35999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHH-HHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDR-LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~-l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+||+++.+.+++. +..+. +++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 762 lLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 762 YIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999988765 55443 5799999999999988899999999999999999988764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=270.02 Aligned_cols=194 Identities=24% Similarity=0.389 Sum_probs=172.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEec-------CeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQI-------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~-------~~ig~ 88 (291)
|+.++|++.+.++...|-++||+|.+|||+-|+||+|||||||+.-+.|.+.++ +|+++++++++ +++|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 678899999999999999999999999999999999999999999999999875 89999999986 67999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+||++-+||.++|++|+.|.... ..+.+..++.+..+++..|++. .++.|.+||||||-||++.|+|+.+|+.++|||
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999999875322 2333455667888999999987 689999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH-hHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 168 PTVGLDPILSQIIWDRLKE-MALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
|||.||..-+.++.+..-. .++.|...++||||.+.+....||+-|
T Consensus 161 PFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 161 PFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999998865 456699999999999988755566655
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=347.89 Aligned_cols=189 Identities=25% Similarity=0.338 Sum_probs=158.1
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| .++|++|++.+++. |++||+.|+..
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g----~iayv~Q~~~l~~~-Ti~eNI~~g~~- 512 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG----RISFSPQTSWIMPG-TIKDNIIFGLS- 512 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC----EEEEEeCCCccCCc-cHHHHHHhccc-
Confidence 4689999999999999999999999999999999999999999999998 49999999999886 99999997632
Q ss_pred cCCChHHHHHH-----HHHHHHHcCCC---CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHH
Q psy6612 112 FDMTDDQIETR-----SKEILKLLELP---PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183 (291)
Q Consensus 112 ~~~~~~~~~~~-----~~~~l~~~~l~---~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~ 183 (291)
+ ......+. +.+.++.+... ....+..+||||||||++||||++.+|+++||||||++||+.+++.+++.
T Consensus 513 ~--~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 513 Y--DEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred c--chHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 1 11111111 11222222211 12345778999999999999999999999999999999999999999985
Q ss_pred -HHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 184 -LKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 184 -l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.++. +|+|+|++||+++.+..||++++|++|+++..|+++++..
T Consensus 591 ~l~~~~-~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 591 CLCKLM-SNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHh-cCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 56665 4899999999999998899999999999999999888754
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=284.20 Aligned_cols=186 Identities=22% Similarity=0.336 Sum_probs=138.0
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHH-HHHHcCCCCCccEEEEC-----------------C-Eec--CeEE
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL-NCIVGRNTLDAGTIKLS-----------------F-RQI--SDIG 87 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl-~~i~gl~~p~~G~I~~~-----------------g-~~~--~~ig 87 (291)
..+..+|+++||++++||++||+||||||||||+ .+|.. +|++.+. . ..+ ...+
T Consensus 5 ~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T cd03270 5 GAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPA 79 (226)
T ss_pred cchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCce
Confidence 3456799999999999999999999999999995 44431 2221110 0 001 1234
Q ss_pred EEcCCCC--CCCCCCHHH---HHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 88 YMPQELA--LHGELSIRE---TFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 88 ~v~q~~~--l~~~ltv~e---nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+..|++. +.+..++.. ...+...++. .....++ .++++.+++.. .++++.+||||||||++|||||+.+|
T Consensus 80 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p 156 (226)
T cd03270 80 IAIDQKTTSRNPRSTVGTVTEIYDYLRLLFA--RVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGL 156 (226)
T ss_pred EEecCCCCCCCCCccHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCC
Confidence 4444432 234445442 2222211111 1222233 46789999964 58899999999999999999999998
Q ss_pred --CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEe
Q psy6612 161 --KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRL 222 (291)
Q Consensus 161 --~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~ 222 (291)
++|||||||+|||+.++..+.+.|++++++|.|||++|||++++..||++++| ++|+|+++|
T Consensus 157 ~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 157 TGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 59999999999999999999999999987799999999999998779999999 999998764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=345.42 Aligned_cols=193 Identities=24% Similarity=0.373 Sum_probs=159.7
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ..|||++|++.+++ .|++||+.++
T Consensus 670 ~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~----~~i~yv~Q~~~l~~-~Tv~enI~~~ 744 (1560)
T PTZ00243 670 LEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE----RSIAYVPQQAWIMN-ATVRGNILFF 744 (1560)
T ss_pred cCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC----CeEEEEeCCCccCC-CcHHHHHHcC
Confidence 456789999999999999999999999999999999999999999999985 45999999998875 5999999875
Q ss_pred ccccCCChHHHHH-----HHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH
Q psy6612 109 GYMFDMTDDQIET-----RSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180 (291)
Q Consensus 109 ~~~~~~~~~~~~~-----~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i 180 (291)
... ..+...+ .+++.++.+ |+.. .+++..+||||||||++|||||+.+|+++||||||++||+..++.+
T Consensus 745 ~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i 821 (1560)
T PTZ00243 745 DEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERV 821 (1560)
T ss_pred Chh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 321 1111111 122334444 4432 4677899999999999999999999999999999999999999888
Q ss_pred HHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 181 WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 181 ~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++.+......|+|+|++||+++.+..||++++|++|+++.+|+.+++.+
T Consensus 822 ~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 822 VEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 8754322225899999999999998899999999999999999888764
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=292.78 Aligned_cols=210 Identities=27% Similarity=0.474 Sum_probs=177.6
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
...+.+.++++.|+ .+++|+++||++++|+.++++||+|+||||+++++..++.+++|.|.++|+++ +.|
T Consensus 260 ~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 260 LGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred cceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 34578899999996 47899999999999999999999999999999999999999999999999987 349
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH--HHHcC-CCC-CCCCcC----cCChhHHHHHHHHHHHhc
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI--LKLLE-LPP-AKKIVG----ALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~--l~~~~-l~~-~~~~~~----~LSgGqkQrv~iAral~~ 158 (291)
|.|||+..||.+ |.+.|+.|+..- ...++....++.+ -+.+. +++ .+..++ .|||||||||+|||+++.
T Consensus 340 g~VPQDtvLFND-ti~yni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 340 GIVPQDTVLFND-TIAYNIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred CcCcccceehhh-hHHHHHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 999999999987 999999876432 2233322222211 11111 222 455555 499999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+|++|+|||.||+||..+.+++...|++.. .|.|-+++.|.++.+..||.|++|++|+|++.|.++++...
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~ 487 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA 487 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc
Confidence 999999999999999999999999999987 57899999999999999999999999999999999887653
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=262.14 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=176.6
Q ss_pred ceEEEEeEEEEE-----CC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE--ec-----
Q psy6612 18 HSVAVTSAYKKI-----GN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR--QI----- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~-----~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~--~~----- 83 (291)
..|.+++++|+| ++ -++++++||+++.||+++|=||+|||||||||++-|-+.|++|+|++.-. -+
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 457788999988 23 47999999999999999999999999999999999999999999998432 11
Q ss_pred ----------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHH
Q psy6612 84 ----------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ----------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~ 151 (291)
+.||||.|-....|..+..|.++-+..-.+.+.+..+.++..++.+++++. .+-.|..+||||||||.
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVN 162 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVN 162 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehh
Confidence 349999999888898898888887766678888888899999999999975 57889999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
|||.++.+-++|+|||||++||..++..+.++|.+-+..|.+++=+-||-+.-+. |||++-|..
T Consensus 163 IaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 163 IARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred hhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999998889999999999776666 999988853
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=299.30 Aligned_cols=200 Identities=28% Similarity=0.340 Sum_probs=172.5
Q ss_pred ccceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC-
Q psy6612 16 VKHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL- 93 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~- 93 (291)
-+.+++++|+++.|++ +.+++++||.|.+|+.+||+||||||||||||+|+|...|.+|+|.+.- . -++||+.|+.
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~-v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T-VKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c-eEEEEEEehhh
Confidence 3668999999999966 6999999999999999999999999999999999999999999999843 3 4699999997
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
.+.+..|+.|++.-... ...+..+..+|..|++.. ..++++.||||||-|+.+|+.++.+|.+|||||||+.
T Consensus 396 ~l~~~~t~~d~l~~~~~------~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 396 ELDPDKTVLEELSEGFP------DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred hcCccCcHHHHHHhhCc------cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 45577799998864321 111457888999999964 5799999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEE-echhHH
Q psy6612 172 LDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGR-LVHHDI 227 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~-~~~~~~ 227 (291)
||..+...+.+.|.++. .|||+||||-.++.. |++++.+.+ ++... |..++.
T Consensus 470 LDi~s~~aLe~aL~~f~---Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 470 LDIESLEALEEALLDFE---GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred CCHHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 99999999999999983 599999999999987 999999998 55433 555444
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=269.98 Aligned_cols=186 Identities=24% Similarity=0.332 Sum_probs=151.0
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-----cC-----CCCCcc-----------EEEECCEecC-------
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-----GR-----NTLDAG-----------TIKLSFRQIS------- 84 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-----gl-----~~p~~G-----------~I~~~g~~~~------- 84 (291)
.-|+|+|++|+.|.+++|.|++|||||||++.+. .. ..|..+ -|.++..++.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998662 11 012221 2455544430
Q ss_pred ----------------------------eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--
Q psy6612 85 ----------------------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-- 134 (291)
Q Consensus 85 ----------------------------~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-- 134 (291)
.+.|..++...+..||+.|++.|+..... ..++.++++.+||.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKLQTLCDVGLGYIK 162 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHHHHHHHcCCchhh
Confidence 13455555555678899999887654321 235667899999975
Q ss_pred CCCCcCcCChhHHHHHHHHHHHhcC---CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLLHN---PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.++++.+|||||+||++|||+|+.+ |+++||||||+|||+..+..+++.|++++++|.|||++||+++++..||+++
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~aD~ii 242 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 5899999999999999999999996 7999999999999999999999999999878999999999999997799999
Q ss_pred EE------eCCEEEEEech
Q psy6612 212 LM------RDDQYIGRLVH 224 (291)
Q Consensus 212 ~l------~~G~i~~~~~~ 224 (291)
.| ++|+++++|++
T Consensus 243 ~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 243 DLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EecCCcCCCCCEEEEeCCC
Confidence 99 89999998763
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=313.32 Aligned_cols=212 Identities=21% Similarity=0.343 Sum_probs=183.3
Q ss_pred CcccccccceEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----
Q psy6612 10 DPEIIEVKHSVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---- 83 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---- 83 (291)
+|+-|.-+..++++|++.+|... .+|+||||+|++||-+||+|..|||||||+.++-++..|.+|+|.+||.++
T Consensus 1129 pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~ig 1208 (1381)
T KOG0054|consen 1129 PPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIG 1208 (1381)
T ss_pred CCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeeccccc
Confidence 34566666789999999999764 899999999999999999999999999999999999999999999999998
Q ss_pred -----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCc----CcCChhH
Q psy6612 84 -----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIV----GALSGGQ 146 (291)
Q Consensus 84 -----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~----~~LSgGq 146 (291)
++++.+||+|.+|.+ |++.|+.-+. ..++++.++ +++.++|. . +|..+ .++|-||
T Consensus 1209 L~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~---e~sD~~IW~----ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1209 LHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD---EYSDDEIWE----ALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred HHHHHhcCeeeCCCCceecC-ccccccCccc---ccCHHHHHH----HHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence 468999999999998 9999986432 223444443 44444432 1 34444 4699999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhH
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 226 (291)
||.++|||||+++++||+|||+|+++|+++-..+.+.|++-- .++|||.+.|+++.+..||||+||++|++++.++|.+
T Consensus 1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence 999999999999999999999999999999999999999864 3699999999999999999999999999999999998
Q ss_pred HHHH
Q psy6612 227 IVES 230 (291)
Q Consensus 227 ~~~~ 230 (291)
+.++
T Consensus 1360 Ll~~ 1363 (1381)
T KOG0054|consen 1360 LLSD 1363 (1381)
T ss_pred HHhC
Confidence 8754
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=311.01 Aligned_cols=202 Identities=23% Similarity=0.415 Sum_probs=174.4
Q ss_pred ccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCC
Q psy6612 16 VKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~ 92 (291)
-+..++++|.+++.+. .+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+|+|.++|. ++|+||.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----iaYv~Q~ 590 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----VAYVPQQ 590 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----EEEeccc
Confidence 3456889999998764 45899999999999999999999999999999999999999999999986 9999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-------CC-----CCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-------AK-----KIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~-----~~~~~LSgGqkQrv~iAral~~~p 160 (291)
|-+++. |++|||.|+..+ .+++.+++++.+.|.. .| .+--+||||||||++||||+.+++
T Consensus 591 pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~a 662 (1381)
T KOG0054|consen 591 PWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDA 662 (1381)
T ss_pred cHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccC
Confidence 999887 999999886432 2346666677666631 11 233469999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|||.|+|++|.+..+.+++..-.-.-+++|+|++||.++.+..||.|++|++|+|.+.|+.+++.+
T Consensus 663 dIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~ 731 (1381)
T KOG0054|consen 663 DIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLK 731 (1381)
T ss_pred CEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHh
Confidence 999999999999999988888776644445799999999999999999999999999999999998875
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=244.08 Aligned_cols=123 Identities=41% Similarity=0.699 Sum_probs=110.3
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl 105 (291)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++ ..++|++|++.+++.+|+.+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999887 359999999999999999999
Q ss_pred HHhccccCCChHHHHHHHHHHHHHcCCCC-C----CCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 106 RYYGYMFDMTDDQIETRSKEILKLLELPP-A----KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~----~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
....++.++++.+++.. . ++++.+||+|||||++|||||+.+|+++||||||+
T Consensus 80 ------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 22345777888887643 3 34459999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=257.61 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=131.9
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---------cEEEECCEec------CeEEEEcCCCCCCCCCC
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---------GTIKLSFRQI------SDIGYMPQELALHGELS 100 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---------G~I~~~g~~~------~~ig~v~q~~~l~~~lt 100 (291)
+++++++++| +++|+||||||||||+++|+|+++|.. |++.+.|.+. +.++|+||++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 999999999999999999999986653 4677777653 5699999998766
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHH
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~ 176 (291)
|... . .+++.++++. -...++++.+||+|||||++||++++ .+|+++||||||+|||+.+
T Consensus 89 ------~~~~----~----~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~ 152 (197)
T cd03278 89 ------YSII----S----QGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDAN 152 (197)
T ss_pred ------eeEE----e----hhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHH
Confidence 1110 1 2355666666 22357889999999999999999997 4669999999999999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 177 ~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
+..+++.|+++++ +.|||++||+++.+..||+++.|..
T Consensus 153 ~~~l~~~l~~~~~-~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 153 VERFARLLKEFSK-ETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHhcc-CCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999865 6899999999998877999999864
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=280.13 Aligned_cols=207 Identities=26% Similarity=0.446 Sum_probs=180.6
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
..+++++++.. ..++|+||++.+|||+||.|-=|||+|-|+++|.|..++.+|+|.++|+++ ..|+
T Consensus 262 ~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 262 PVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred cEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 35677777643 268999999999999999999999999999999999999999999999976 2499
Q ss_pred EEcCCC---CCCCCCCHHHHHHHhcc--cc---CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 88 YMPQEL---ALHGELSIRETFRYYGY--MF---DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 88 ~v~q~~---~l~~~ltv~enl~~~~~--~~---~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~ 157 (291)
|||.|. .++..+++.+|+.+... .. -.+....++.++++.+.+++.- .+.++.+||||.||||.|||.|+
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~ 417 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA 417 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence 999984 68999999999976511 11 2344555667888999999853 57899999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
.+|++|||||||.|+|..++.+++++|++++++|++||++|-++.++.. ||||++|++|++++..+.++..
T Consensus 418 ~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~t 489 (500)
T COG1129 418 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEAT 489 (500)
T ss_pred cCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 9999999999999999999999999999999999999999999999975 9999999999999987766543
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=258.06 Aligned_cols=187 Identities=19% Similarity=0.249 Sum_probs=139.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH----------------cCCCCCcc--------E
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV----------------GRNTLDAG--------T 75 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~----------------gl~~p~~G--------~ 75 (291)
++++|. |+|++..++++++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 445554 5688888888887 8899999999999999999998 55566666 6
Q ss_pred EEECCEe-----------c-CeEEEEcCCCCCCC-CCCHHHHHHHhccccCCChHHHH--HHHHHHHHHcCCCC-CCCCc
Q psy6612 76 IKLSFRQ-----------I-SDIGYMPQELALHG-ELSIRETFRYYGYMFDMTDDQIE--TRSKEILKLLELPP-AKKIV 139 (291)
Q Consensus 76 I~~~g~~-----------~-~~ig~v~q~~~l~~-~ltv~enl~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~-~~~~~ 139 (291)
|.+++.+ + +.+++++|+..+++ .+|..|+..+... .+....... ....++.+.+++.. .++++
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~-~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~ 156 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES-AGFSRSNPYYIVPQGKINSLTNMKQDEQQEM 156 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH-cCCCCCCCcEEEEcCchHHhhhccccccccc
Confidence 6665521 1 34899999888876 4577666554432 233221100 00112233344543 57889
Q ss_pred CcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe
Q psy6612 140 GALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
.+||||||||++|||||+. +|+++|+||||++||+.+++.+++.|+++++ +.|||++||+.+....||++++|.
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHhhCCEEEEEE
Confidence 9999999999999999973 5899999999999999999999999999865 788999999976555699999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=244.72 Aligned_cols=211 Identities=21% Similarity=0.334 Sum_probs=178.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v 89 (291)
+++++++... +-|-.+|.++..||++-++||||||||||+-.++|++ |.+|+|.++|.++ +.-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4566666543 3477899999999999999999999999999999987 5699999999987 346899
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc-------CCC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH-------NPK 161 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~-------~p~ 161 (291)
.|+..-...|.|+.++.+. .+.+.....+.++...+++++ ..+.+++|||||-|||-+|..+++ ..+
T Consensus 78 sQqq~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~ 152 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQ 152 (248)
T ss_pred hhccCCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccce
Confidence 9987766678999988653 234556667888889999976 688999999999999999998765 346
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHHh
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALR 240 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~ 240 (291)
+||+|||.++||...+..+..+|.+++..|.+|||++||++.-.+ ||++++++.|++...|..+++... +-+...|+
T Consensus 153 LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~--~vL~q~fg 230 (248)
T COG4138 153 LLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP--PVLAQAYG 230 (248)
T ss_pred eEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh--HHHHHHhc
Confidence 999999999999999999999999999999999999999999755 999999999999999999888654 44555554
Q ss_pred c
Q psy6612 241 H 241 (291)
Q Consensus 241 ~ 241 (291)
.
T Consensus 231 ~ 231 (248)
T COG4138 231 M 231 (248)
T ss_pred c
Confidence 3
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=260.04 Aligned_cols=185 Identities=17% Similarity=0.196 Sum_probs=142.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
.|+++|+. +|++..++++++| ++++|+||||||||||+++|+-..-.+. ....-.++++++|+..+++.
T Consensus 5 ~l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~-----~~~~~~~i~~~~~~~~~~~~ 73 (212)
T cd03274 5 KLVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRA-----SKMRQKKLSDLIHNSAGHPN 73 (212)
T ss_pred EEEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCH-----HHhhhhhHHHHhcCCCCCCC
Confidence 36677775 8899999999988 8999999999999999999983211110 00011458999999999999
Q ss_pred CCHHHHHHHhcccc--------CCChHHHHH--HHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc----CCCEE
Q psy6612 99 LSIRETFRYYGYMF--------DMTDDQIET--RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH----NPKLL 163 (291)
Q Consensus 99 ltv~enl~~~~~~~--------~~~~~~~~~--~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~----~p~ll 163 (291)
+|+.++..++...+ +...+.... ...++++.++++. .++++..||+|||||++||||++. +|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 74 LDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred CceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 99998876655432 221111000 0245567777765 578899999999999999999974 47999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
+|||||+|||+.++..+++.|++++ ++.|+|++||+.+....||++++|..
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999999999999999999986 46789999999765566999999964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=257.69 Aligned_cols=188 Identities=18% Similarity=0.236 Sum_probs=144.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCE-ec-----------CeE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFR-QI-----------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~-~~-----------~~i 86 (291)
+.++|. ++|....++. .+.+ .+++|+||||||||||+++|++++.++ .|++.+.+. ++ ..+
T Consensus 6 ~~~~~f-~~~~~~~~~~----~~~~-~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVIS----GFDP-QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeec----cCCC-CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 445555 5565443332 3334 499999999999999999999999886 457777664 21 368
Q ss_pred EEEcCCC---------CCCCCCCHHHHHHHhccc-cCC-ChHHHHHHHHHHHHHcCCC--------------------C-
Q psy6612 87 GYMPQEL---------ALHGELSIRETFRYYGYM-FDM-TDDQIETRSKEILKLLELP--------------------P- 134 (291)
Q Consensus 87 g~v~q~~---------~l~~~ltv~enl~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~--------------------~- 134 (291)
++++|++ .+.+.+||.+++.+.... +.. ......+++.++++.+++. .
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~ 159 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV 159 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence 9999985 345678888887553321 101 1223446788899999985 2
Q ss_pred CCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
.++++.+||+|||||++|||||+ .+|+++|+||||++||+.++..+++.|+++. +|.|+|++||+.+..+.||++
T Consensus 160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEE
Confidence 24788999999999999999998 5789999999999999999999999999985 488999999997666779999
Q ss_pred EEEe
Q psy6612 211 GLMR 214 (291)
Q Consensus 211 ~~l~ 214 (291)
+-+.
T Consensus 239 ~~~~ 242 (251)
T cd03273 239 FRTR 242 (251)
T ss_pred EEEE
Confidence 8775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=247.25 Aligned_cols=184 Identities=16% Similarity=0.196 Sum_probs=134.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEe-CCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECC--------EecCeEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSF--------RQISDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~-~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g--------~~~~~ig~ 88 (291)
.|+++|+. +|.+. .+++|+.. +|++++|+||||||||||+++|++.+ .+..+....+. .....+++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 46788887 65444 55667654 58999999999999999999999643 34444443321 11145899
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc---------
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH--------- 158 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~--------- 158 (291)
+||++.... ++. +..+.+.+...+.+ .+...++.. .++++.+||+|||||++|||||+.
T Consensus 81 ~f~~~~~~~--~~~-------r~~gl~~~~~~~~~--~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~ 149 (213)
T cd03279 81 TFQLGGKKY--RVE-------RSRGLDYDQFTRIV--LLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGG 149 (213)
T ss_pred EEEECCeEE--EEE-------EecCCCHHHHHHhh--hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence 998873211 111 11233333222211 234444443 578899999999999999999985
Q ss_pred -CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 159 -NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 159 -~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
+|+++||||||++||+.++..+.+.|.++++++.|||++||+++++.. ||+++++++|.
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 578999999999999999999999999998768999999999999976 89999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=239.94 Aligned_cols=160 Identities=21% Similarity=0.244 Sum_probs=128.9
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH----cCCCCCccEEEECCE------ecCeEEEEcCCC-----CCCCCCCH
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIV----GRNTLDAGTIKLSFR------QISDIGYMPQEL-----ALHGELSI 101 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~----gl~~p~~G~I~~~g~------~~~~ig~v~q~~-----~l~~~ltv 101 (291)
..++++.+| +++|+||||||||||+++|+ |...|+.|.+..+.+ .-..++++||++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344667788 99999999999999999995 999998886652111 114699999987 34455688
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHH------HHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR------ISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQr------v~iAral~~~p~llllDEPtsgLD~~ 175 (291)
++|+.+. ... .+.+.+ ++++.+||+||+|| ++||||++.+|+++++||||++||+.
T Consensus 94 ~~~~~~~------~~~----~~~~~~--------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~ 155 (204)
T cd03240 94 LENVIFC------HQG----ESNWPL--------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE 155 (204)
T ss_pred hhceeee------chH----HHHHHH--------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence 8887542 111 122222 67889999999996 78999999999999999999999999
Q ss_pred HHH-HHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 176 LSQ-IIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 176 ~~~-~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
++. .+.++|.+++++ +.|||++||+++.+..||+++.|.+
T Consensus 156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 156 NIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 999 999999999865 7899999999998877999999965
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-32 Score=282.03 Aligned_cols=218 Identities=29% Similarity=0.389 Sum_probs=186.9
Q ss_pred ccccccceEEEEeEEEEE----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--CCccEEEECCEec--
Q psy6612 12 EIIEVKHSVAVTSAYKKI----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIKLSFRQI-- 83 (291)
Q Consensus 12 ~~~~~~~~l~~~~l~~~~----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~-- 83 (291)
..++.++...-+|+.+.- +.+++|+|||=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|.+.
T Consensus 780 ~~~~~~~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q 859 (1391)
T KOG0065|consen 780 LSLTFKDVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ 859 (1391)
T ss_pred ccccccceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch
Confidence 345555666666666555 56789999999999999999999999999999999999753 3479999999876
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccC---CChHHHHHHHHHHHHHcCCCC-CCCCcCc----CChhHHHHHH
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFD---MTDDQIETRSKEILKLLELPP-AKKIVGA----LSGGQQRRIS 151 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~----LSgGqkQrv~ 151 (291)
+.+|||-|++...+.+||+|-+.|.++++. .+.++..+.++++++.++|+. .+.-++. ||..||+|+.
T Consensus 860 ~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 860 ETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred hhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceee
Confidence 469999999988899999999999887763 345555678999999999976 5666666 9999999999
Q ss_pred HHHHHhcCC-CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH--hhhCeEEEEeC-CEEEEEechhHH
Q psy6612 152 FAVSLLHNP-KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA--KGAHNIGLMRD-DQYIGRLVHHDI 227 (291)
Q Consensus 152 iAral~~~p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~--~~~d~i~~l~~-G~i~~~~~~~~~ 227 (291)
||--|+.+| .+|+|||||||||..+...+++.+++++..|.||+.+-|.++-. +..|++++|++ |+.+.-|+..+-
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~ 1019 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGEN 1019 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccc
Confidence 999999999 89999999999999999999999999999999999999998764 55899999976 588888887654
Q ss_pred HH
Q psy6612 228 VE 229 (291)
Q Consensus 228 ~~ 229 (291)
..
T Consensus 1020 s~ 1021 (1391)
T KOG0065|consen 1020 SS 1021 (1391)
T ss_pred cH
Confidence 43
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=269.18 Aligned_cols=126 Identities=22% Similarity=0.336 Sum_probs=110.1
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC---CEEEEcccCCCCC
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP---KLLILDEPTVGLD 173 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p---~llllDEPtsgLD 173 (291)
||+.|++.|+..... . .+..++++.+||.+ .++++.+|||||+||+.||++|+.+| +++||||||+|||
T Consensus 792 ltv~E~l~~f~~~~~-----i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 792 MTVEEALEFFEAIPK-----I-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred CcHHHHHHHHHhchh-----h-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 688888877644321 1 23457899999975 58899999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVES 230 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~~ 230 (291)
+..+..+++.|++++++|.|||++||+++.+..||+++.| ++|++++.|+++++...
T Consensus 866 ~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~ 928 (943)
T PRK00349 866 FEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKV 928 (943)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhC
Confidence 9999999999999987799999999999999779999999 79999999998887653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=278.97 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=157.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHH---------HHHcCCCC------------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLN---------CIVGRNTL------------------ 71 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~---------~i~gl~~p------------------ 71 (291)
.+++++++. ..|+++||+|++||+++|.|+||||||||++ .++|...+
T Consensus 600 ~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQs 674 (1809)
T PRK00635 600 TLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRD 674 (1809)
T ss_pred eEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCC
Confidence 567777752 3799999999999999999999999999999 55664322
Q ss_pred ------CccEEEECCE--ecC---------------eEEEEcCC---------------------C--------------
Q psy6612 72 ------DAGTIKLSFR--QIS---------------DIGYMPQE---------------------L-------------- 93 (291)
Q Consensus 72 ------~~G~I~~~g~--~~~---------------~ig~v~q~---------------------~-------------- 93 (291)
-++.+++-|- +++ ...|.|+. .
T Consensus 675 pigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e 754 (1809)
T PRK00635 675 LPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQ 754 (1809)
T ss_pred CCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHH
Confidence 1112331110 000 01112221 0
Q ss_pred ---CCCCCCCHHHHHHHhccc---cCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh---cCCCE
Q psy6612 94 ---ALHGELSIRETFRYYGYM---FDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL---HNPKL 162 (291)
Q Consensus 94 ---~l~~~ltv~enl~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~---~~p~l 162 (291)
..|...||.|++.+...- +.....+..+++ ++++.+|+.. .++++.+||||||||++|||||+ .+|++
T Consensus 755 ~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 755 VLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred HHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 245678999999764321 122234455566 5789999975 58999999999999999999997 69999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe------CCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR------DDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~------~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..++++|++++++|.|||++||+++.+..||++++|. +|+++..|+++++..
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999888999999999999996699999996 789999999988764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=244.41 Aligned_cols=212 Identities=23% Similarity=0.361 Sum_probs=188.4
Q ss_pred ccceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 16 VKHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
-...|++++++..-.. ...+++|||++.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++
T Consensus 254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 3567899999987643 5889999999999999999999999999999999999999999999999985
Q ss_pred CeEEEEcCCC---CCCCCCCHHHHHHHhccc------c-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHH
Q psy6612 84 SDIGYMPQEL---ALHGELSIRETFRYYGYM------F-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ~~ig~v~q~~---~l~~~ltv~enl~~~~~~------~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~ 151 (291)
..+||||+|. .+.+.+|+.||+.+.... + -......++.+.++++.|++.. ...++..||||++||+-
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~I 413 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLI 413 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhh
Confidence 2599999986 688899999999764221 1 1445677888999999999853 56789999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+||-|..+|++||+.+||.|||..+...+.+.|.+.++.|++|+++|-|++++.. ||||++|.+|++++..++++.
T Consensus 414 laREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred hhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccccC
Confidence 9999999999999999999999999999999999999999999999999999966 999999999999998887753
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-31 Score=252.48 Aligned_cols=201 Identities=24% Similarity=0.285 Sum_probs=164.0
Q ss_pred ceEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCC--C
Q psy6612 18 HSVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL--A 94 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~--~ 94 (291)
+.+.+.|+++.|.++ .++++++|-++.++.++++||||||||||||+++|.+.|+.|.|.-.-. ..+++.-|+. .
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H--~~~~~y~Qh~~e~ 465 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH--NKLPRYNQHLAEQ 465 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc--ccchhhhhhhHhh
Confidence 356678899999766 6889999999999999999999999999999999999999999975332 2355656653 3
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+.-..++.|++.- .+. +....+.+..++..+||.. .+.++++||+|||.||.+|++++.+|.+|+|||||+||
T Consensus 466 ldl~~s~le~~~~---~~~--~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhL 540 (614)
T KOG0927|consen 466 LDLDKSSLEFMMP---KFP--DEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHL 540 (614)
T ss_pred cCcchhHHHHHHH---hcc--ccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCC
Confidence 3344577776642 222 1223456778899999974 57999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIV 228 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~ 228 (291)
|..+...+.+.|.++. .+||++|||...+.. ++++++..||.+. ..|......
T Consensus 541 Di~tid~laeaiNe~~---Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 541 DIETIDALAEAINEFP---GGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CchhHHHHHHHHhccC---CceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999873 589999999999977 9999999998764 456654443
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=260.75 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=103.8
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhc---CCCEEEEcccCCCCC
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLH---NPKLLILDEPTVGLD 173 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~---~p~llllDEPtsgLD 173 (291)
||+.|.+.|+...... .+..++++.+||.. .++++.+|||||+||+.||++|+. +|+++||||||+|||
T Consensus 790 ~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD 863 (924)
T TIGR00630 790 MTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH 863 (924)
T ss_pred CcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence 4555555554332211 13456788899974 588999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDI 227 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~ 227 (291)
+..+..+++.|++++++|.|||++||+++.+..||+++.| ++|+++..|+++++
T Consensus 864 ~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 864 FDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999987899999999999999779999999 79999999987654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=221.64 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=126.6
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-----cE----EEECCEecCeEEEEcCCCCCCCCCCHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-----GT----IKLSFRQISDIGYMPQELALHGELSIRET 104 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-----G~----I~~~g~~~~~ig~v~q~~~l~~~ltv~en 104 (291)
.++++++++.+| +.+|+||||||||||+.+|.-...... |. +.-.|.+...+.+.+|+..+++ |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 457788899888 999999999999999999985443321 11 1111222245888898877665 1
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH----hcCCCEEEEcccCCCCCHHHHHHH
Q psy6612 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL----LHNPKLLILDEPTVGLDPILSQII 180 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral----~~~p~llllDEPtsgLD~~~~~~i 180 (291)
... ......+.++++. -...++++++||+|||||++||+|+ +.+|+++||||||+|||+..+..+
T Consensus 84 -----~~~----~~~~~~~~~~l~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~ 152 (198)
T cd03276 84 -----PLC----VLSQDMARSFLTS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKIS 152 (198)
T ss_pred -----cCC----HHHHHHHHHHhcc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHH
Confidence 111 1113456667766 2225789999999999999999999 589999999999999999999999
Q ss_pred HHHHHHhHhC---CcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 181 WDRLKEMALN---GKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 181 ~~~l~~l~~~---g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.+.|.++.++ +.|||++||+++++..+|+|.+|..+
T Consensus 153 ~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~ 191 (198)
T cd03276 153 TDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMK 191 (198)
T ss_pred HHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEec
Confidence 9999998643 36899999999999888999999864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-30 Score=244.48 Aligned_cols=202 Identities=26% Similarity=0.377 Sum_probs=153.1
Q ss_pred ccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 16 VKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
++.-+.+.++++.|.+...++|++|++.+|+-|||+|||||||||+|++|.|-..|..-++-+. .+.++. .
T Consensus 72 ~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y--------~ls~e~-~ 142 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY--------LLSREI-E 142 (614)
T ss_pred ccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh--------hhcccC-C
Confidence 4556889999999999999999999999999999999999999999999999998865444321 111111 0
Q ss_pred CCCCCHHHHHH-----------Hhc--------------------cccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcC
Q psy6612 96 HGELSIRETFR-----------YYG--------------------YMFDMTDDQIETRSKEILKLLELP-P-AKKIVGAL 142 (291)
Q Consensus 96 ~~~ltv~enl~-----------~~~--------------------~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~L 142 (291)
....++.+.+. +.. +.-.+..+....++..+|.-+|.. . .++.+..|
T Consensus 143 ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 143 PSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred CchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 11111111111 000 000112223444555666666764 3 57899999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE-EEE
Q psy6612 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ-YIG 220 (291)
Q Consensus 143 SgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~-i~~ 220 (291)
|||+|.|++|||||..+|++|+|||||++||+.+...+-+.|.++.. .++++++|+-+.+.. |.+|+-|++++ +..
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhHhhhhheecccceeee
Confidence 99999999999999999999999999999999999999999998742 289999999999976 99999999998 567
Q ss_pred EechhHHH
Q psy6612 221 RLVHHDIV 228 (291)
Q Consensus 221 ~~~~~~~~ 228 (291)
.|+.+...
T Consensus 301 ~Gnydqy~ 308 (614)
T KOG0927|consen 301 EGNYDQYV 308 (614)
T ss_pred cCCHHHHh
Confidence 78776553
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-30 Score=238.51 Aligned_cols=192 Identities=22% Similarity=0.281 Sum_probs=156.1
Q ss_pred eEEEEeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCe---------EEE
Q psy6612 19 SVAVTSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---------IGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~---------ig~ 88 (291)
.|+++|+.+.|..+ .-+..||++|++||++-|+|.||||||||++++.|+.+|++|+|.+||+++.. ++-
T Consensus 322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 58999999999765 67899999999999999999999999999999999999999999999998731 333
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC----CCC--CcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP----AKK--IVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~--~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
||.|..+|+.+ .+.......+.++.+++++.+.+ .+. ..-.||.|||+|+++.-|++-+.++
T Consensus 402 vFsDyhLF~~l------------l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~I 469 (546)
T COG4615 402 VFSDYHLFDQL------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDI 469 (546)
T ss_pred HhhhHhhhHhh------------hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCe
Confidence 44444444321 11111122345666666666532 233 3347999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHh-HhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEe
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL 222 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l-~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~ 222 (291)
+++||=.+--||..++.|+..+.-+ +++|+||+.+|||-.....|||++.|++|++++..
T Consensus 470 lv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 470 LVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred EEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 9999999999999999999888655 57899999999998888889999999999998754
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=218.69 Aligned_cols=211 Identities=20% Similarity=0.330 Sum_probs=165.9
Q ss_pred EEEEeEEEEE----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC----CccEEEECCEec--------
Q psy6612 20 VAVTSAYKKI----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL----DAGTIKLSFRQI-------- 83 (291)
Q Consensus 20 l~~~~l~~~~----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p----~~G~I~~~g~~~-------- 83 (291)
|.+.|++..+ |...+++++|+++.+|||-|++|++|||||-..|.|+|..+- +.-+..+++.++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 3455566555 567899999999999999999999999999999999999763 344455555443
Q ss_pred -----CeEEEEcCCCC--CCCCCCHHHHHH--Hhcccc-CC---ChHHHHHHHHHHHHHcCCCC----CCCCcCcCChhH
Q psy6612 84 -----SDIGYMPQELA--LHGELSIRETFR--YYGYMF-DM---TDDQIETRSKEILKLLELPP----AKKIVGALSGGQ 146 (291)
Q Consensus 84 -----~~ig~v~q~~~--l~~~ltv~enl~--~~~~~~-~~---~~~~~~~~~~~~l~~~~l~~----~~~~~~~LSgGq 146 (291)
++|+++||+|. +.|.-++...+- ...+.+ +. .-...++++-+++.++|+.+ ...++.+|-.|+
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE 163 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGE 163 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCc
Confidence 35899999985 444434332221 111111 00 01123567888999999953 358999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEech
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~ 224 (291)
-|+|+||.|++.+|++||.||||+++|+.++.+++.+|.++.+ +|.||+++|||+..+.. ||++-+|.=|+-+++++.
T Consensus 164 ~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~ 243 (330)
T COG4170 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPS 243 (330)
T ss_pred ceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccch
Confidence 9999999999999999999999999999999999999999974 58999999999999976 999999999988888887
Q ss_pred hHHHHH
Q psy6612 225 HDIVES 230 (291)
Q Consensus 225 ~~~~~~ 230 (291)
+++.+.
T Consensus 244 e~l~~~ 249 (330)
T COG4170 244 EELVTM 249 (330)
T ss_pred hHHhcC
Confidence 776553
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=228.93 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=128.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE--------e------cCe
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR--------Q------ISD 85 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~--------~------~~~ 85 (291)
|+++|+ ++|.+... |.+.++ +++|+||||||||||+.+|++++.+..|++...+. . -..
T Consensus 4 i~l~nf-~~~~~~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~ 76 (247)
T cd03275 4 LELENF-KSYKGRHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY 76 (247)
T ss_pred EEEECc-cccCCCee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence 456665 55654332 333445 99999999999999999999999887777754321 1 112
Q ss_pred EEEEc--CCCCC-CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-----------------------CCCCc
Q psy6612 86 IGYMP--QELAL-HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-----------------------AKKIV 139 (291)
Q Consensus 86 ig~v~--q~~~l-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------------------~~~~~ 139 (291)
+...+ |++.. ....++.+....+ ...+ .....+.+.++++.+|+.. .++++
T Consensus 77 v~~~f~~~~~~~~~~~~~~~~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~ 153 (247)
T cd03275 77 VTAVYEDDDGEEKTFRRIITGGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM 153 (247)
T ss_pred EEEEEEcCCCcEEEEEEEEECCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH
Confidence 33333 43221 0001111111000 0111 1112334567778888731 12345
Q ss_pred CcCChhHHHHHHHHHHHhcC----CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 140 GALSGGQQRRISFAVSLLHN----PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|++++++|.|||++||+.+.+..||++++|..
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 89999999999999999875 89999999999999999999999999998668999999999888777999988864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=244.18 Aligned_cols=190 Identities=27% Similarity=0.355 Sum_probs=158.9
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
+..++++|++..-.+ ...|++.||++++||-+.|.||||||||||+|+|+|+-+.-+|+|.+-. -.++-|+||.|.+
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~--~~~~lflpQ~PY~ 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA--DSALLFLPQRPYL 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC--CCceEEecCCCCC
Confidence 468999999998854 6889999999999999999999999999999999999999999998752 1458999999999
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC----CC---CCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP----AK---KIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~---~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
... |.+|-+.|+......++ +.+.++|.++||.+ .+ +=-..||+|||||+++||.|+++|++++|||.
T Consensus 468 p~G-tLre~l~YP~~~~~~~d----~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 468 PQG-TLREALCYPNAAPDFSD----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred CCc-cHHHHHhCCCCCCCCCh----HHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 888 99999988754432333 35667888888853 11 11236999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
|++||+.++..+++.+++-. .+.|||-|+|....-...++.+-+.
T Consensus 543 TsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 543 TSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hhccChHHHHHHHHHHHhhC-CCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999998854 4799999999988876655544443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=232.06 Aligned_cols=187 Identities=25% Similarity=0.340 Sum_probs=149.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
.++-.+++|.||+. .|.==.=+|..||++|++||||-||||+.++|+|.++|++|. ..+ -+++|-||--.--.+
T Consensus 342 lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~-~~vSyKPQyI~~~~~ 415 (591)
T COG1245 342 LVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED-LKVSYKPQYISPDYD 415 (591)
T ss_pred eeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc-ceEeecceeecCCCC
Confidence 44556667777643 233334456678899999999999999999999999999998 222 359999998655566
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~ 177 (291)
.||.+.+.-..... .... ..-.++++-++|+. .++++.+|||||.|||+||.||..++++++||||++.||.+.+
T Consensus 416 gtV~~~l~~~~~~~-~~~s---~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 416 GTVEDLLRSAIRSA-FGSS---YFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred CcHHHHHHHhhhhh-cccc---hhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 79999876432210 1111 12345777888877 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
-.+.+.|+++.+ .++|.++|.||+-.+.. +||+++.+.
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 999999999985 47999999999999987 999999864
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-29 Score=238.81 Aligned_cols=198 Identities=23% Similarity=0.277 Sum_probs=147.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-eEEEEcCC-CCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-DIGYMPQE-LALHG 97 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-~ig~v~q~-~~l~~ 97 (291)
|.+.+++..||++.+|++-++++..|..|||+|+||+|||||||+|+. |+|.....+-. .--+++.. ..+..
T Consensus 81 i~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 81 IHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred eeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHHhhhhhc
Confidence 667899999999999999999999999999999999999999999997 44443322100 01122211 12233
Q ss_pred CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
++++.+.+.--..+.. .....+....+|.-+|.+. ..+++++||||=|.|++|||||..+||+|||||||+.||..
T Consensus 155 D~~~~dfl~~e~~l~~--~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~ 232 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLA--GLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV 232 (582)
T ss_pred cHHHHHHHHhhhhhhc--cchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH
Confidence 3344444322111110 0012223334788899865 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE-EEEechhHHH
Q psy6612 176 LSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY-IGRLVHHDIV 228 (291)
Q Consensus 176 ~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i-~~~~~~~~~~ 228 (291)
+...+.+.|..+. .|+|+||||-+++.. |..|+-+++-++ ...|..+++.
T Consensus 233 av~WLe~yL~t~~---~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 233 AVAWLENYLQTWK---ITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred HHHHHHHHHhhCC---ceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 9999999999873 799999999999977 999988888666 3456655553
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=222.97 Aligned_cols=207 Identities=24% Similarity=0.372 Sum_probs=164.8
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC--C
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA--L 95 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~--l 95 (291)
+|-+.++++.| |.++.+++++|-|.-...++|+||||.||||||+++.|-+.|+.|+.+-+-+ -+||+.-|... |
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr--L~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR--LRIGWFDQHANEAL 663 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccce--eeeechhhhhHHhh
Confidence 56788999999 6789999999999999999999999999999999999999999998875433 35999888753 4
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-CC-CCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-PA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~-~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
-..-|..|++. +.++++-. .+...|-.|||. ++ .-.+..||||||-||++|-.-+..|+||||||||++||
T Consensus 664 ~~Eetp~EyLq---r~FNlpyq----~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLD 736 (807)
T KOG0066|consen 664 NGEETPVEYLQ---RKFNLPYQ----EARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLD 736 (807)
T ss_pred ccccCHHHHHH---HhcCCChH----HHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcc
Confidence 44457777653 44555543 456678899994 44 35788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHHHHHHHHHHH
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIVESLVEALED 237 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~~~~~~~~~ 237 (291)
.++...+.+.|+++. ..|||||||-.++.. -...+++.+..|- -+|..++...++.+.+-+
T Consensus 737 IESIDALaEAIney~---GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLdaLGE 799 (807)
T KOG0066|consen 737 IESIDALAEAINEYN---GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEVLDALGE 799 (807)
T ss_pred hhhHHHHHHHHHhcc---CcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHHHHHHHH
Confidence 999999999999983 479999999999855 3467777665442 235555555554444443
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-27 Score=223.86 Aligned_cols=192 Identities=24% Similarity=0.310 Sum_probs=160.7
Q ss_pred eEEEEeEEEEECCE--eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 19 SVAVTSAYKKIGNH--VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 19 ~l~~~~l~~~~~~~--~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.+++.++++.|... +.+.+++++++.-.-.+++|+||+||||+++++.|-..|..|.+.+.++ .+|+|.+|...-+
T Consensus 362 ~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r--~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR--LRIKYFAQHHVDF 439 (582)
T ss_pred eeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc--ceecchhHhhhhH
Confidence 57788899999654 4999999999999999999999999999999999999999999888765 6799999976433
Q ss_pred CCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 97 GELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
-++.+... .+....+ +.. ++.+++.+..||++. +..++..||||||-||++|.+...+|-+|+|||||+.||
T Consensus 440 l~~~v~~v-d~~~~~~pG~~----~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD 514 (582)
T KOG0062|consen 440 LDKNVNAV-DFMEKSFPGKT----EEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLD 514 (582)
T ss_pred HHHHhHHH-HHHHHhCCCCC----HHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCcccc
Confidence 33333322 2222222 333 345667799999974 456689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEE
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIG 220 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~ 220 (291)
..+...+.+.|+.+. ..|||||||.+++.. |+.+++.++|++..
T Consensus 515 ~dsl~AL~~Al~~F~---GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 515 RDSLGALAKALKNFN---GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHHHHHHHHHhcC---CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999998883 479999999999987 99999999999865
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=202.51 Aligned_cols=145 Identities=21% Similarity=0.206 Sum_probs=111.3
Q ss_pred eEeeeeEEEeCCc-EEEEECCCCccHHHHHHHHH--------cCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHH
Q psy6612 34 VLKGLNLNVPENK-IYGLLGPSGCGKTTLLNCIV--------GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRET 104 (291)
Q Consensus 34 ~L~~vsl~i~~Ge-i~~liGpNGaGKSTLl~~i~--------gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~en 104 (291)
.+-++||++.+|+ +++|.||||||||||+|+|+ |...|....+ .++|+.|.
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~--------~~~~~~~~------------ 75 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS--------SLPVFENI------------ 75 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc--------cCcCccEE------------
Confidence 3557999999995 89999999999999999998 4443321111 12221111
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH-H
Q psy6612 105 FRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW-D 182 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~-~ 182 (291)
+..++... .+...+.+|+||+|++.+++++ .+|+++++||||+|||+..+..++ .
T Consensus 76 ----------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~ 132 (200)
T cd03280 76 ----------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIA 132 (200)
T ss_pred ----------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHH
Confidence 11112211 3556789999999999999884 899999999999999999999996 4
Q ss_pred HHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 183 RLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 183 ~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
.++.+.+.|.|+|++||+.+....||+++.|++|++..+
T Consensus 133 ~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 133 ILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 678887678999999999665566999999999998765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=194.38 Aligned_cols=203 Identities=25% Similarity=0.404 Sum_probs=162.5
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+..+++.++.++|.. .+++-|+|++++.|....++|.||||||||||+++|-.---.|.|.+.|++. .+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 346889999999954 6899999999999999999999999999999999998766679999999764 124
Q ss_pred EEEcCC----------CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH
Q psy6612 87 GYMPQE----------LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 87 g~v~q~----------~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral 156 (291)
.|+-.+ ..+--++++.+.+. .. -+... ++-+.+++.++++. .-+.+.+|-|||+||.|+..|
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mif-gV--~g~dp----~Rre~LI~iLDIdl-~WRmHkvSDGqrRRVQicMGL 162 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIF-GV--GGDDP----ERREKLIDILDIDL-RWRMHKVSDGQRRRVQICMGL 162 (291)
T ss_pred eEecccccccccccccccccccccHHHHHh-hc--cCCCh----hHhhhhhhheeccc-eEEEeeccccchhhhHHHHhc
Confidence 444322 22333556655542 21 11111 34456777777653 356788999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
++.-++|+|||-|--||..++..+++.+++-++ +|.||+..||..+-++. ..++++|++|+++.....+.+
T Consensus 163 L~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i 235 (291)
T KOG2355|consen 163 LKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKI 235 (291)
T ss_pred ccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchh
Confidence 999999999999999999999999999999885 58999999999999876 999999999999876555443
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.3e-25 Score=211.39 Aligned_cols=196 Identities=24% Similarity=0.313 Sum_probs=157.5
Q ss_pred ccceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-CeEEEEcCC
Q psy6612 16 VKHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-SDIGYMPQE 92 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~ig~v~q~ 92 (291)
-++++++++++..=. +..+++|+||+|++|+-+.|.||||||||+|+|.++|+-+-.+|++..-.+.- +++-|+||.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQr 509 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQR 509 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCC
Confidence 357899999988763 45678899999999999999999999999999999999999999998644321 559999999
Q ss_pred CCCCCCCCHHHHHHHhcccc-CCChHHHHHHHHHHHHHcCCCC-------CCCCc-----CcCChhHHHHHHHHHHHhcC
Q psy6612 93 LALHGELSIRETFRYYGYMF-DMTDDQIETRSKEILKLLELPP-------AKKIV-----GALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~-------~~~~~-----~~LSgGqkQrv~iAral~~~ 159 (291)
|.+..+ |.+|-+-|+..-. ...+....+++.+.|+.++|.+ .+.++ ..||+|||||+++||.+.++
T Consensus 510 PYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~k 588 (659)
T KOG0060|consen 510 PYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHK 588 (659)
T ss_pred CCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcC
Confidence 998877 9999988863221 1111111234555555555531 23222 46999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
|++-||||-||++|......+.+.+++ .|.|.|-|+|.-.+-+.-|.++-|+.
T Consensus 589 Pk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 589 PKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999988877 48999999999998888899988875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=212.76 Aligned_cols=181 Identities=23% Similarity=0.324 Sum_probs=135.8
Q ss_pred eEEEEECCEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE-----------ECCEec--------
Q psy6612 24 SAYKKIGNHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK-----------LSFRQI-------- 83 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~-----------~~g~~~-------- 83 (291)
.+..+||.+ -++=-.+ ...+|+++||+||||-||||-+|+|+|.+.|.=|+-. |.|..+
T Consensus 79 e~vHRYg~N-gFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVN-GFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCC-ceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 456677642 1222223 4678999999999999999999999999999877542 111111
Q ss_pred ---CeEEEEcCC----CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQE----LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ---~~ig~v~q~----~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
-++..-+|- |..+.. +|.|.+.- .+.+-..+++.+.++|.. .++.+++||||+-||++||.|
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG-~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~ 227 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKG-KVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAA 227 (591)
T ss_pred cCCcceecchHHHHHHHHHhcc-hHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHH
Confidence 012222221 222222 44443321 111235678899999977 799999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
++++.+++++|||+|-||...+-...+.|+++++.+++||+|.||+..+.. +|-|.++-.
T Consensus 228 l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG 288 (591)
T COG1245 228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYG 288 (591)
T ss_pred HhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEec
Confidence 999999999999999999999999999999999878999999999999987 999988864
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-25 Score=197.06 Aligned_cols=172 Identities=15% Similarity=0.128 Sum_probs=109.4
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc---------EEEECCEecCeEEEEcCCCCCCCCCCHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG---------TIKLSFRQISDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G---------~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl 105 (291)
++++.+++.+| +.+|+|||||||||||.+|+-.+..... +....|..-..|-..++....- =..+|+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~---~~~~n~ 89 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN---IQVDNL 89 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc---cccCCc
Confidence 45677777776 8899999999999999998776632221 0111121111122222221100 001111
Q ss_pred HHhc------cccCCChHHHHHHHHHHHHHcCC-CC-CCCCcCcCChhHHHHHHHHHHH----hcCCCEEEEcccCCCCC
Q psy6612 106 RYYG------YMFDMTDDQIETRSKEILKLLEL-PP-AKKIVGALSGGQQRRISFAVSL----LHNPKLLILDEPTVGLD 173 (291)
Q Consensus 106 ~~~~------~~~~~~~~~~~~~~~~~l~~~~l-~~-~~~~~~~LSgGqkQrv~iAral----~~~p~llllDEPtsgLD 173 (291)
.+.. .+..+.. .+++..+.- .. .+..+.+||+|||||+.+|++| +.+|+++|+||||++||
T Consensus 90 ~~~~~q~~~~~~~~~~~-------~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD 162 (213)
T cd03277 90 CQFLPQDRVGEFAKLSP-------IELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMD 162 (213)
T ss_pred eEEEchHHHHHHHhCCh-------HhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCC
Confidence 1000 0000111 122222221 12 3567889999999999877654 58999999999999999
Q ss_pred HHHHHHHHHHHHHhHhC-C-cEEEEEccCHhHHhh-hC--eEEEEeCCE
Q psy6612 174 PILSQIIWDRLKEMALN-G-KTIIITTHYIEEAKG-AH--NIGLMRDDQ 217 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~-g-~tii~~tHd~~~~~~-~d--~i~~l~~G~ 217 (291)
+.++..+++.|.+++++ | .|+|++||++..... || ++++|.+|+
T Consensus 163 ~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 163 PTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999765 5 589999999977743 65 788898885
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=180.61 Aligned_cols=74 Identities=27% Similarity=0.297 Sum_probs=69.5
Q ss_pred CChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 142 LSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 142 LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
||+|||||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.+.|.|+|++||+++.+..+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999996 6999999999999999999999999999997668999999999998877999999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=189.71 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=108.5
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
++.+++|++|+. |++++|+||||||||||+|+|+|... +...|.++..-.+++|...+|+.+|+.||+.+...
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGIS 85 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecCccCcccceEEEeccchhccccccC
Confidence 345788887765 79999999999999999999998653 12345554334577887778999999999976432
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH-HHHHHhHh
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW-DRLKEMAL 189 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~ 189 (291)
.+ ..+. +++.++++.+++ .+|+++|+||||+|+|+..+..+. .+++.+.+
T Consensus 86 ~~---~~e~-~~~~~iL~~~~~-------------------------~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~ 136 (199)
T cd03283 86 YF---YAEL-RRLKEIVEKAKK-------------------------GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN 136 (199)
T ss_pred hH---HHHH-HHHHHHHHhccC-------------------------CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH
Confidence 21 2222 456777777662 799999999999999999998775 57888876
Q ss_pred CCcEEEEEccCHhHHhh
Q psy6612 190 NGKTIIITTHYIEEAKG 206 (291)
Q Consensus 190 ~g~tii~~tHd~~~~~~ 206 (291)
.|.|+|++||+++++..
T Consensus 137 ~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 137 KNTIGIISTHDLELADL 153 (199)
T ss_pred CCCEEEEEcCcHHHHHh
Confidence 78999999999999864
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=222.12 Aligned_cols=198 Identities=24% Similarity=0.346 Sum_probs=168.6
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC---CccEEEECCEec------CeEEEEcCCCCCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---DAGTIKLSFRQI------SDIGYMPQELALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p---~~G~I~~~g~~~------~~ig~v~q~~~l~~~ltv~ 102 (291)
..+|+|+|.-+++|+++.++||.|||||||+++++|-+.- ..|+|.++|.+. +.++|.+|+...++.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4799999999999999999999999999999999998753 357999999875 4589999999999999999
Q ss_pred HHHHHhccccCC-------ChHHHH-HHHHHHHHHcCCCC-CCCC-----cCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 103 ETFRYYGYMFDM-------TDDQIE-TRSKEILKLLELPP-AKKI-----VGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 103 enl~~~~~~~~~-------~~~~~~-~~~~~~l~~~~l~~-~~~~-----~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
|.+.|.++..+. .+.+.. ...+.+++.+||+. +|.. .+..|||||+||.+|-+++.+|+++.+||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 999997765432 222211 14567899999975 4544 456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhH-H-hhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEE-A-KGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~-~-~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|.|||..+.-++.+.|++++. .+.|.+++-|.... + ...|.|++|.+|+++..|+.++...
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999999984 47899999888655 3 4489999999999999999887654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=178.60 Aligned_cols=140 Identities=25% Similarity=0.279 Sum_probs=105.9
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEE-EcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY-MPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~-v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
....++.+.++.+.+|+|||||||||+++++....-..+|.+.... .. +.|+ +++....+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~----------------- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-KAGCIVAAVSAEL----------------- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-cCCCcceeeEEEE-----------------
Confidence 3455666667779999999999999999998877766655544311 11 1110 11110000
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHh
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 189 (291)
+ ....+||+||+||+++|++|+. +|+++|+|||++|+|+..+..+.+.+.++..
T Consensus 72 ------------------i----~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~ 129 (162)
T cd03227 72 ------------------I----FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLV 129 (162)
T ss_pred ------------------e----hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 0001299999999999999987 7899999999999999999999999999865
Q ss_pred CCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 190 NGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 190 ~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
++.++|++||+.+....+|+++.|..
T Consensus 130 ~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 130 KGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred cCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 58899999999999988999999864
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=186.49 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=69.9
Q ss_pred cCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEe
Q psy6612 139 VGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
...|||||+||+++|++++. +|+++|+||||++||+..+..+.+.|+++.+ +.|+|++||++.....||++++|.
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~~~~d~~~~l~ 246 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVAAMADNHFLVE 246 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHHHhcCcEEEEE
Confidence 34599999999999997654 9999999999999999999999999999864 689999999999766699999998
Q ss_pred CCE
Q psy6612 215 DDQ 217 (291)
Q Consensus 215 ~G~ 217 (291)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 863
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-23 Score=183.81 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=113.9
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEE-EEcCCCCCCCCCCHHHHHHHh
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG-YMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig-~v~q~~~l~~~ltv~enl~~~ 108 (291)
+...+.+|++++..+|++++|.||||+|||||+++++-. .+ +.++| |||.+...++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~----la~~g~~vpa~~~~~~----------- 71 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL----MAQIGCFVPCDSADIP----------- 71 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH----HHHhCCCcCcccEEEe-----------
Confidence 345789999999999999999999999999999999821 00 12333 4443321111
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--hcCCCEEEEccc---CCCCCHHHHHHHHHH
Q psy6612 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--LHNPKLLILDEP---TVGLDPILSQIIWDR 183 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~~~p~llllDEP---tsgLD~~~~~~i~~~ 183 (291)
.+++++..+++.+ .....+|.||+|++.+++++ +.+|+++||||| |+++|+.+... .+
T Consensus 72 -------------~~~~il~~~~l~d--~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~--~i 134 (222)
T cd03285 72 -------------IVDCILARVGASD--SQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW--AI 134 (222)
T ss_pred -------------ccceeEeeecccc--chhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH--HH
Confidence 1223455556542 23678999999999999999 899999999999 99999988854 34
Q ss_pred HHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 184 LKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 184 l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
++.+.+ .|.++|++||+.+....||++..+++|++.....
T Consensus 135 l~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 135 AEYIATQIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHhcCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 455553 4789999999744445599999999999876654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=212.58 Aligned_cols=108 Identities=21% Similarity=0.158 Sum_probs=98.4
Q ss_pred HHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC---CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEE
Q psy6612 122 RSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN---PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII 196 (291)
Q Consensus 122 ~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~ 196 (291)
+..+.|..+||.+ +.++..+|||||.||+-||.-|..+ +.++||||||+||++.....+++.|.+|.+.|.|||+
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3456788899976 5799999999999999999999875 7899999999999999999999999999999999999
Q ss_pred EccCHhHHhhhCeEEEEe------CCEEEEEechhHHHH
Q psy6612 197 TTHYIEEAKGAHNIGLMR------DDQYIGRLVHHDIVE 229 (291)
Q Consensus 197 ~tHd~~~~~~~d~i~~l~------~G~i~~~~~~~~~~~ 229 (291)
+.||++.++.||.++-|- .|+|++.|+++++.+
T Consensus 1758 ieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1758 IDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred EeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999884 468999999998865
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-22 Score=187.82 Aligned_cols=177 Identities=29% Similarity=0.430 Sum_probs=142.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC--------CCCccEEEECCEecCeEEEEcCCC-CCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--------TLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--------~p~~G~I~~~g~~~~~ig~v~q~~-~l~~~ltv~ 102 (291)
..+++|+||++++|++++++|+|||||||+|++|+|.. +|++|.|.+--.. --+++|.+. .-|...|+.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--~~a~iPge~Ep~f~~~til 473 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--VSALIPGEYEPEFGEVTIL 473 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--hhhccCcccccccCchhHH
Confidence 46999999999999999999999999999999999974 6899999874332 234555442 123345666
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
|.+.- ..+ + -..+.+++...|+.+ ..+++++||-|||.|+.||++++..|.+++.||-.|.||+.+...
T Consensus 474 ehl~s---~tG---D--~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~r 545 (593)
T COG2401 474 EHLRS---KTG---D--LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVR 545 (593)
T ss_pred HHHhh---ccC---c--hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHH
Confidence 66531 111 1 134678899999965 367889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhH-hCCcEEEEEccCHhHHhh--hCeEEEEeCCEE
Q psy6612 180 IWDRLKEMA-LNGKTIIITTHYIEEAKG--AHNIGLMRDDQY 218 (291)
Q Consensus 180 i~~~l~~l~-~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i 218 (291)
+..-|.+++ +-|.|++++||+.+.... -|.++++.=|.+
T Consensus 546 VArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v 587 (593)
T COG2401 546 VARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKV 587 (593)
T ss_pred HHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccc
Confidence 999999998 459999999999999854 588888866544
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-23 Score=179.65 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=105.1
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
..++++.+|++++|+||||||||||+++|++.. .+..|. |+|.....++. .+.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~------------~~~~~~~~i~~---~dq----------- 74 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC------------FVPAESASIPL---VDR----------- 74 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC------------CccccccccCC---cCE-----------
Confidence 355666689999999999999999999999543 222232 22211110000 000
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH-HHHHhHhCCcE
Q psy6612 116 DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD-RLKEMALNGKT 193 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~t 193 (291)
++..++... .....+.+|.+++| +..+.+++.+|+++|+||||+|+|+..+..+.. +++.+.+.+.+
T Consensus 75 ----------i~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~ 143 (202)
T cd03243 75 ----------IFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCR 143 (202)
T ss_pred ----------EEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCe
Confidence 011111111 23445677888776 666678889999999999999999998888765 56666666899
Q ss_pred EEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 194 IIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 194 ii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
+|++||+.+.+..|+++..+.++++..++..
T Consensus 144 vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 144 TLFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 9999999988888889888988888776543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-22 Score=206.42 Aligned_cols=131 Identities=26% Similarity=0.421 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHhccccCCChH----------HHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC--CE
Q psy6612 97 GELSIRETFRYYGYMFDMTDD----------QIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP--KL 162 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~----------~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p--~l 162 (291)
..+||.|.+.|...+ +.+.. ++..++. +++.+||.+ .++++.+|||||+|||+||+||+.+| ++
T Consensus 435 ~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~l 512 (943)
T PRK00349 435 SELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVL 512 (943)
T ss_pred hcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcE
Confidence 357999988875433 22221 2334443 688899974 58999999999999999999999997 99
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+..+..++++|++++++|.|||+|||+++++..||++++| ++|+++++|+++++..
T Consensus 513 lILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 513 YVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 999999999999999999999999988899999999999998779999999 9999999999888744
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=191.88 Aligned_cols=185 Identities=23% Similarity=0.351 Sum_probs=138.3
Q ss_pred cceEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
.+-|.++|+-.-- .+..++..++|+|++|-.+.|+||||||||+|+|+|.|+-+...|...+=- ..++.|+||.|.+
T Consensus 479 ~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~--~~~mFYIPQRPYm 556 (728)
T KOG0064|consen 479 FNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR--PNNIFYIPQRPYM 556 (728)
T ss_pred ccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC--CcceEeccCCCcc
Confidence 3446666665443 235578999999999999999999999999999999999998888766521 1469999999987
Q ss_pred CCCCCHHHHHHHhccc-----cCCChHHHHHHHHHHHHHcCCCC-CCC---------CcCcCChhHHHHHHHHHHHhcCC
Q psy6612 96 HGELSIRETFRYYGYM-----FDMTDDQIETRSKEILKLLELPP-AKK---------IVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~-----~~~~~~~~~~~~~~~l~~~~l~~-~~~---------~~~~LSgGqkQrv~iAral~~~p 160 (291)
--. |.+|-+-|+... .+..+. ....++..+.|++ ..+ --..||||+|||+++||.+.|.|
T Consensus 557 s~g-tlRDQIIYPdS~e~~~~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrP 631 (728)
T KOG0064|consen 557 SGG-TLRDQIIYPDSSEQMKRKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRP 631 (728)
T ss_pred CcC-cccceeecCCcHHHHHhcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCc
Confidence 633 777776554221 123332 2344455444432 111 11359999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
++-+|||-||+..+.....+.+..+.. |.+.|-+||.+..-+.-.+++
T Consensus 632 kyalLDEcTsAvsidvE~~i~~~ak~~---gi~llsithrpslwk~h~~ll 679 (728)
T KOG0064|consen 632 KYALLDECTSAVSIDVEGKIFQAAKDA---GISLLSITHRPSLWKYHTHLL 679 (728)
T ss_pred chhhhhhhhcccccchHHHHHHHHHhc---CceEEEeecCccHHHHHHHHH
Confidence 999999999999999988888877764 899999999999887544433
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=191.68 Aligned_cols=202 Identities=24% Similarity=0.326 Sum_probs=148.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC---CCCCccEEEECCEec------------
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR---NTLDAGTIKLSFRQI------------ 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl---~~p~~G~I~~~g~~~------------ 83 (291)
-|.++|++.+-.++..+.+.|+.|-.|..|||+||||-||||||+.|+.- ++| .=.|.++.+.+
T Consensus 264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHHHH
Confidence 37789999999899999999999999999999999999999999999864 334 33344443332
Q ss_pred ----CeEEEEcCCC-----CCCCCCCHHHHHHH-hccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHH
Q psy6612 84 ----SDIGYMPQEL-----ALHGELSIRETFRY-YGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRIS 151 (291)
Q Consensus 84 ----~~ig~v~q~~-----~l~~~ltv~enl~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~ 151 (291)
++..++-.+. ..-...|+.|-+.- +..++.......+.++..+|.-+|++. .++|...+|||-|.||+
T Consensus 343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS 422 (807)
T KOG0066|consen 343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS 422 (807)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence 0011100000 00112344433321 111111122223456777888888865 47899999999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEech
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVH 224 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~ 224 (291)
|||||...|-+|.|||||+.||..+...+-++|..|+ +|.++||||-.++.. |..|+-|++.++- ..|..
T Consensus 423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999999999999999999999999999999999885 699999999999976 9999999987764 34443
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-21 Score=193.49 Aligned_cols=108 Identities=24% Similarity=0.299 Sum_probs=98.0
Q ss_pred HHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 123 SKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 123 ~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
..+.|..+||.. +-++..+|||||.|||-||.-|.... -++||||||+||-..-.+++++.|.+|...|.|||++
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 335677789976 57999999999999999999998877 8999999999999999999999999999999999999
Q ss_pred ccCHhHHhhhCeEEEE------eCCEEEEEechhHHHHH
Q psy6612 198 THYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVES 230 (291)
Q Consensus 198 tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~~ 230 (291)
.|+++.++.||.|+=| ..|+|++.|+|+++.+.
T Consensus 882 EHNLdVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~~ 920 (935)
T COG0178 882 EHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKV 920 (935)
T ss_pred ecccceEeecCEEEEcCCCCCCCCceEEEecCHHHHHhC
Confidence 9999999999999887 45789999999998763
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=202.25 Aligned_cols=130 Identities=26% Similarity=0.388 Sum_probs=108.2
Q ss_pred CCCHHHHHHHhccccCCCh---------HHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC--CEEE
Q psy6612 98 ELSIRETFRYYGYMFDMTD---------DQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP--KLLI 164 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p--~lll 164 (291)
.||+.|.+.|+..+..... .++..++ +.+..+||.+ .++++.+|||||+|||.||+||+.+| ++||
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llI 512 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYV 512 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 5799998887654321110 1122222 3467788864 58999999999999999999999986 8999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIV 228 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~ 228 (291)
|||||+|||+..+..+++.|++++++|.|||+|+||++.+..||++++| ++|+++++|+++++.
T Consensus 513 LDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 513 LDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 9999999999999999999999988899999999999998889999999 999999999987764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-22 Score=173.83 Aligned_cols=141 Identities=17% Similarity=0.207 Sum_probs=106.7
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
.+..+.+|++|++++|++++|+||||+||||++++++++.- +.++|+-. |..+..+++.|++.
T Consensus 14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~------------la~~G~~v--pa~~~~l~~~d~I~--- 76 (204)
T cd03282 14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI------------MAQIGCFV--PAEYATLPIFNRLL--- 76 (204)
T ss_pred CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH------------HHHcCCCc--chhhcCccChhhee---
Confidence 35679999999999999999999999999999999998741 12233211 33344455655552
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH-HHHHHHh
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII-WDRLKEM 187 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l 187 (291)
..++..+ .++..+.+|+||+|+ ..+.+++.+|+++|+|||++|+|+.....+ ..+++.+
T Consensus 77 ------------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l 137 (204)
T cd03282 77 ------------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLAILECL 137 (204)
T ss_pred ------------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHH
Confidence 2223332 456778999999976 455668899999999999999999776555 4567777
Q ss_pred HhCCcEEEEEccCHhHHhh
Q psy6612 188 ALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~~~~ 206 (291)
.+.|.++|++||+.+.+..
T Consensus 138 ~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 138 IKKESTVFFATHFRDIAAI 156 (204)
T ss_pred HhcCCEEEEECChHHHHHH
Confidence 7779999999999999875
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-20 Score=169.06 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=64.6
Q ss_pred cCcCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-h-
Q psy6612 139 VGALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-A- 207 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~- 207 (291)
...+|+||||+++||++|+ .+|+++|+||||++||+..+..+++.+.++. .+++++|+.+.+.. |
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----CEEEEeCCchhccchhc
Confidence 4558999999999999986 7999999999999999999999999998763 46677777666644 6
Q ss_pred --CeEEEEeCCEE
Q psy6612 208 --HNIGLMRDDQY 218 (291)
Q Consensus 208 --d~i~~l~~G~i 218 (291)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999975
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-20 Score=161.46 Aligned_cols=153 Identities=18% Similarity=0.221 Sum_probs=101.6
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
...+.+|++|+.++ ++++|+|||||||||++|+|+++.-. ..|.. +-... ..++++.| +|+.+++.|++...
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~-vp~~~-~~i~~~~~---i~~~~~~~~~ls~g- 89 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF-VPASK-AEIGVVDR---IFTRIGASDDLAGG- 89 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe-ecccc-ceecceee---EeccCCchhhhccC-
Confidence 45689999999988 99999999999999999999875422 12211 11111 34555543 34555555555321
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--hcCCCEEEEccc---CCCCCHHHHHHHHHHH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--LHNPKLLILDEP---TVGLDPILSQIIWDRL 184 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~~~p~llllDEP---tsgLD~~~~~~i~~~l 184 (291)
.|.=+..++.+++++ +.+|+++||||| |+++|.... ...++
T Consensus 90 --------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--~~~il 135 (216)
T cd03284 90 --------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--AWAIV 135 (216)
T ss_pred --------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--HHHHH
Confidence 122233334444444 579999999999 888887552 33455
Q ss_pred HHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 185 KEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 185 ~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
..+.+. +.++|++||+.+....+|++..+.+|++......
T Consensus 136 ~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~ 176 (216)
T cd03284 136 EYLHEKIGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKG 176 (216)
T ss_pred HHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeC
Confidence 555555 7899999999876666888777788877655443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=168.41 Aligned_cols=180 Identities=23% Similarity=0.326 Sum_probs=143.0
Q ss_pred EEECC-EeeEeeeeEEEeCCc-----EEEEECCCCccHHHHHHHHHcCCCCCcc-EEEECCEecCeEEEEcCCCCCCCCC
Q psy6612 27 KKIGN-HVVLKGLNLNVPENK-----IYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQISDIGYMPQELALHGEL 99 (291)
Q Consensus 27 ~~~~~-~~~L~~vsl~i~~Ge-----i~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~~~ig~v~q~~~l~~~l 99 (291)
++|.+ +.-+.+..|.|+.|+ ++..+|+||.|||||+++++|.++|++| +| +.-+++|-||...--..-
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~-----p~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI-----PVLNVSYKPQKISPKREG 417 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc-----cccceeccccccCccccc
Confidence 34533 567888999999985 7899999999999999999999999876 22 335688999986554445
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
||++.+.--.+-..+. .+-+.+.++-+.+++ .++.+..||||++|||++|.+|-..+++++.|||.+-||.+.+.
T Consensus 418 tvR~ll~~kIr~ay~~----pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi 493 (592)
T KOG0063|consen 418 TVRQLLHTKIRDAYMH----PQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRI 493 (592)
T ss_pred hHHHHHHHHhHhhhcC----HHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHH
Confidence 8887664211111111 234556677777766 58899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 179 IIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 179 ~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
.--..++++. ..++|-.+|.||.-.+-. +||+++.+.
T Consensus 494 ~AskvikRfilhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 494 IASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 9999999875 567899999999988866 999988864
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-19 Score=152.94 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=86.3
Q ss_pred EEEEECCCCccHHHHHHHHH-cCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIV-GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 125 (291)
+++|.||||+||||++|.++ ...-+..|...... . ..+++ .++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~-~-~~~~~----------------------------------~d~ 44 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE-S-AELPV----------------------------------FDR 44 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh-h-eEecc----------------------------------cce
Confidence 36899999999999999998 33333333211100 0 00111 011
Q ss_pred HHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH-HHHHHhHhC-CcEEEEEccCHh
Q psy6612 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW-DRLKEMALN-GKTIIITTHYIE 202 (291)
Q Consensus 126 ~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~-~~l~~l~~~-g~tii~~tHd~~ 202 (291)
++..++..+ .++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.++ +.++|++||+++
T Consensus 45 il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~ 123 (185)
T smart00534 45 IFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE 123 (185)
T ss_pred EEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 123334433 467788999999984444432 4599999999999999999877764 556677664 889999999997
Q ss_pred HHhhhCeEEEEeCC
Q psy6612 203 EAKGAHNIGLMRDD 216 (291)
Q Consensus 203 ~~~~~d~i~~l~~G 216 (291)
....|++.--+.++
T Consensus 124 l~~~~~~~~~v~~~ 137 (185)
T smart00534 124 LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHhhcCccceEE
Confidence 66657643333333
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.2e-18 Score=155.50 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=86.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCe----------EEEEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----------ig~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
.-++|+||||||||||+++|+|+++|++|+|.++|+++.. ++++||.. +...++|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v-------------- 176 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDV-------------- 176 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccc--------------
Confidence 5789999999999999999999999999999999987521 11222211 1111111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEE
Q psy6612 116 DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii 195 (291)
|.+=.|.....+.+.+++|+++++|||++ ...+..++..+. .|.|+|
T Consensus 177 --------------------------~~~~~k~~~~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI 223 (270)
T TIGR02858 177 --------------------------LDGCPKAEGMMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSII 223 (270)
T ss_pred --------------------------cccchHHHHHHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEE
Confidence 11111121224444447999999999974 334555555554 689999
Q ss_pred EEccCHhH--Hh-----------h-hCeEEEEeCCEEEEEechh
Q psy6612 196 ITTHYIEE--AK-----------G-AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 196 ~~tHd~~~--~~-----------~-~d~i~~l~~G~i~~~~~~~ 225 (291)
++||+.+. +. . ++|+++|++|+ ..|..+
T Consensus 224 ~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~ 265 (270)
T TIGR02858 224 ATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVE 265 (270)
T ss_pred EEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCcee
Confidence 99997655 41 3 79999999875 444443
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=144.98 Aligned_cols=134 Identities=18% Similarity=0.201 Sum_probs=93.2
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH--cCCCCCccEEEECCEecCeEEEEcCCCCCC-CCCCHHHHHHHhc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV--GRNTLDAGTIKLSFRQISDIGYMPQELALH-GELSIRETFRYYG 109 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~--gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~-~~ltv~enl~~~~ 109 (291)
.+=+|+++.=..+.+++|.||||+|||||||.|+ +++ +..|...+... ..++|..|...-+ ...++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~--~~~~~~d~i~~~l~~~~si~~------ 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADS--ATIGLVDKIFTRMSSRESVSS------ 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCC--cEEeeeeeeeeeeCCccChhh------
Confidence 3445555542223799999999999999999998 434 56676655322 3466666642211 1111111
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCC--hhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH-HHHHHHHHHH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALS--GGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL-SQIIWDRLKE 186 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LS--gGqkQrv~iAral~~~p~llllDEPtsgLD~~~-~~~i~~~l~~ 186 (291)
.+| .-+-||+++|++++.+|.++|+|||++|+|+.. ...+..++++
T Consensus 88 -------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~ 136 (213)
T cd03281 88 -------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEH 136 (213)
T ss_pred -------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHH
Confidence 112 335689999999999999999999999999976 4455678888
Q ss_pred hHhC---CcEEEEEccCHhHHhh
Q psy6612 187 MALN---GKTIIITTHYIEEAKG 206 (291)
Q Consensus 187 l~~~---g~tii~~tHd~~~~~~ 206 (291)
+.+. +.++|++||+.+.+..
T Consensus 137 l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 137 LLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHhcCCCCcEEEEEcChHHHHHh
Confidence 8754 2589999999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-18 Score=172.45 Aligned_cols=147 Identities=22% Similarity=0.325 Sum_probs=104.4
Q ss_pred eEEEEeEEEEECCEeeEee-----eeEEEeCC-cEEEEECCCCccHHHHHHHHHcC-CCCCccEEEECCEecCeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKG-----LNLNVPEN-KIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQISDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~-----vsl~i~~G-ei~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~~~ig~v~q 91 (291)
.+.++++. ++++++ +|+++..+ ++++|.||||+|||||||+|+|. +.+..|- +||.
T Consensus 295 ~i~l~~~r-----hPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------~Vpa 357 (771)
T TIGR01069 295 KIILENAR-----HPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------PIPA 357 (771)
T ss_pred CEEEcccc-----CceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------CccC
Confidence 45555544 355544 78899888 89999999999999999999997 4444441 3333
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
.... .+...+.+. . .+... + ......+++|+||+|++.|++++ .+|.++|+|||++|
T Consensus 358 ~~~~--~~~~~d~i~--~---~i~~~---~------------si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~G 414 (771)
T TIGR01069 358 NEHS--EIPYFEEIF--A---DIGDE---Q------------SIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAG 414 (771)
T ss_pred Cccc--cccchhhee--e---ecChH---h------------HHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCC
Confidence 3210 011122221 0 11110 0 02345788999999999998876 78999999999999
Q ss_pred CCHHHHHHH-HHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 172 LDPILSQII-WDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 172 LD~~~~~~i-~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
+||.....+ ..++..+.+.|.++|++||+.+...
T Consensus 415 tD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 415 TDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 999999999 5677888777899999999988754
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=147.22 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=67.2
Q ss_pred cCcCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-h-
Q psy6612 139 VGALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-A- 207 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~- 207 (291)
...+|.||||+++||++|+ .+|+++|||||+++||+..+..+++.+.++ +..++++||+.+.+.. +
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhhc
Confidence 3579999999999999996 699999999999999999999999998765 3589999999887743 3
Q ss_pred -CeEEEEeCCEE
Q psy6612 208 -HNIGLMRDDQY 218 (291)
Q Consensus 208 -d~i~~l~~G~i 218 (291)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999986
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-17 Score=145.01 Aligned_cols=171 Identities=23% Similarity=0.270 Sum_probs=99.0
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHH-cCCC-CC-c-------cEEEE-CCE---ecCeEEEEcCCCCCC----C
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-GRNT-LD-A-------GTIKL-SFR---QISDIGYMPQELALH----G 97 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-gl~~-p~-~-------G~I~~-~g~---~~~~ig~v~q~~~l~----~ 97 (291)
+...+.+.+| +++|+|||||||||++.+|. .+-. +. + .-|.. ... ....+...+++.... .
T Consensus 16 ~~~~~~~~~~-~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~~~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~~~~~ 94 (220)
T PF02463_consen 16 KNAELSFSPG-LNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRGSKLKDLINKSGSDQDSKSAEVELIFDNSDEEFELDK 94 (220)
T ss_dssp CEEEEETTSS-EEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT-SSGGTCB--BTTB---SEEEEEEEEECTTEESSSSS
T ss_pred CeEEEecCCC-CEEEEcCCCCCHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667777665 99999999999999999993 3321 11 1 11111 000 012244444443211 0
Q ss_pred C-CCHHHHHHHhc--cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCC
Q psy6612 98 E-LSIRETFRYYG--YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTV 170 (291)
Q Consensus 98 ~-ltv~enl~~~~--~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPts 170 (291)
. ..+...+.-.. .++-.......+.+.+.+...++.. ..||||||.+++||.-|+ ..++++|||||.+
T Consensus 95 ~~~~i~r~~~~~~~~~~~in~~~~~~~~~~~~l~~~~i~~-----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~ 169 (220)
T PF02463_consen 95 KEIEISRRIDRKGRSEYKINGKKVRLKDLEELLPEVGISP-----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDA 169 (220)
T ss_dssp SEEEEEEEEETTS-EEEEETTEEE-HHHHHHHHHCTTTTT-----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccc
Confidence 0 00000000000 0000001111234455566555432 289999999999997653 4789999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
+||...+..+.++|+++.+ +.-+|++||+...+..||+.+.+
T Consensus 170 ~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 170 ALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp TS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 9999999999999999864 47899999999999889886655
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=134.37 Aligned_cols=138 Identities=16% Similarity=0.147 Sum_probs=92.9
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc-CCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG-RNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
...+.+|++|++.+|++++|.||||+||||+++++++ .+.++.|...+.. . ..++|..|= +..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~-~~~~~~~~i---~~~~~~~d------ 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S-ATLSIFDSV---LTRMGASD------ 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c-eEEeccceE---EEEecCcc------
Confidence 3568999999999999999999999999999999999 6678888766532 2 123332211 00000001
Q ss_pred cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHH--HHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH-HHHHHH
Q psy6612 110 YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQ--RRISFAVSLLHNPKLLILDEPTVGLDPILSQII-WDRLKE 186 (291)
Q Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk--Qrv~iAral~~~p~llllDEPtsgLD~~~~~~i-~~~l~~ 186 (291)
.....+|.=+. +++.-+..-+.+|.++|+|||.+|.|+.....+ ..+++.
T Consensus 86 ---------------------------~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~ 138 (222)
T cd03287 86 ---------------------------SIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHY 138 (222)
T ss_pred ---------------------------ccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHH
Confidence 11112222222 222222223568999999999999997777664 567777
Q ss_pred hHhC-CcEEEEEccCHhHHhh
Q psy6612 187 MALN-GKTIIITTHYIEEAKG 206 (291)
Q Consensus 187 l~~~-g~tii~~tHd~~~~~~ 206 (291)
+.+. +.++|++||+.+....
T Consensus 139 l~~~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 139 LLEEKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHhccCCeEEEEcccHHHHHH
Confidence 7765 7899999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-16 Score=149.34 Aligned_cols=171 Identities=18% Similarity=0.278 Sum_probs=119.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE--CCEecCeEEEE--------cCCCCC--CCCCCHHHHHHH-hc
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL--SFRQISDIGYM--------PQELAL--HGELSIRETFRY-YG 109 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~--~g~~~~~ig~v--------~q~~~l--~~~ltv~enl~~-~~ 109 (291)
.+|++.|++|.||-||||-+++++|-++|.-|.--- ++..+ ++|. |+.+.. +....-.+++.. +.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~i--l~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEI--LTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHH--hhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 589999999999999999999999999998764321 00111 1110 000000 000000111110 00
Q ss_pred ccc----C-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHH
Q psy6612 110 YMF----D-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183 (291)
Q Consensus 110 ~~~----~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~ 183 (291)
... + ......++...++++.+.|.. .++-+.+||||+-||.+||.+.+++.+++++|||.+.||...+..-...
T Consensus 176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~ 255 (592)
T KOG0063|consen 176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT 255 (592)
T ss_pred HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence 000 0 011112234455677777766 6788999999999999999999999999999999999999999999999
Q ss_pred HHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 184 LKEMALNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 184 l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
|+.+.....=||+|.||++.+.. .|-+..+..
T Consensus 256 IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYG 288 (592)
T KOG0063|consen 256 IRSLINPDRYIIVVEHDLSVLDYLSDFICCLYG 288 (592)
T ss_pred HHHhhCCCCeEEEEEeechHHHhhhcceeEEec
Confidence 99998777889999999999987 888887754
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-16 Score=136.48 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=45.1
Q ss_pred CcCChh--HHHHHHHHHHHhcCCCEEEEcccC-----CCCCHHHHHHHHHHHHHhHh
Q psy6612 140 GALSGG--QQRRISFAVSLLHNPKLLILDEPT-----VGLDPILSQIIWDRLKEMAL 189 (291)
Q Consensus 140 ~~LSgG--qkQrv~iAral~~~p~llllDEPt-----sgLD~~~~~~i~~~l~~l~~ 189 (291)
+..||+ |++++.|||+++.+|+++++|||| ++|||..++.+.+.++++++
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 344444 999999999999999999999999 99999999999999999863
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=155.60 Aligned_cols=139 Identities=19% Similarity=0.251 Sum_probs=97.0
Q ss_pred eeEEEe-CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEE-EEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 38 LNLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIG-YMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 38 vsl~i~-~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig-~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
.++.+. .+.++.|.|||++||||+||+++...- +.++| |||-... ..+++++++.
T Consensus 319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~------------maq~G~~vpa~~~--~~i~~~~~i~--------- 375 (782)
T PRK00409 319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL------------MAKSGLPIPANEP--SEIPVFKEIF--------- 375 (782)
T ss_pred ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH------------HHHhCCCcccCCC--ccccccceEE---------
Confidence 344554 456899999999999999999964310 11222 3333210 0122223321
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH-HHHHhHhCCcE
Q psy6612 116 DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD-RLKEMALNGKT 193 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~g~t 193 (291)
..+|-.. ..+..+++|+||+|++.|++++ .+|.++|+|||++|+||.....+.. ++..+.+.|.+
T Consensus 376 ------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~ 442 (782)
T PRK00409 376 ------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAK 442 (782)
T ss_pred ------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCE
Confidence 1122222 3467889999999999999998 8999999999999999999988865 56777777899
Q ss_pred EEEEccCHhHHhh-hCeEEE
Q psy6612 194 IIITTHYIEEAKG-AHNIGL 212 (291)
Q Consensus 194 ii~~tHd~~~~~~-~d~i~~ 212 (291)
+|++||+.+.... +++..+
T Consensus 443 vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 443 IIATTHYKELKALMYNREGV 462 (782)
T ss_pred EEEECChHHHHHHHhcCCCe
Confidence 9999999988866 554443
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=131.27 Aligned_cols=166 Identities=18% Similarity=0.187 Sum_probs=104.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh-----ccccC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY-----GYMFD 113 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~-----~~~~~ 113 (291)
=+.+.+|+.++|+||+|+|||||++.|++......+++.. +.++.+++. .++.+...-. ..-.+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~-------~v~vI~er~----~ev~el~~~I~~~~v~~~~~ 78 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYL-------IVLLIDERP----EEVTDMQRSVKGEVIASTFD 78 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEE-------EEEEccCCC----ccHHHHHHHhccEEEEecCC
Confidence 3578999999999999999999999999988765433321 222222221 1222222111 00011
Q ss_pred CChHH-------HHHHHHHHHHHcCC------CCCC-----------CCcCcCChhH--------HHHHHHHHHHhcCCC
Q psy6612 114 MTDDQ-------IETRSKEILKLLEL------PPAK-----------KIVGALSGGQ--------QRRISFAVSLLHNPK 161 (291)
Q Consensus 114 ~~~~~-------~~~~~~~~l~~~~l------~~~~-----------~~~~~LSgGq--------kQrv~iAral~~~p~ 161 (291)
.+... ....++...+ -|- +... ..-..+|||+ +||+++||++..+++
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~-~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gs 157 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVE-HGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGS 157 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-CCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCc
Confidence 11100 0011111110 010 0000 1113479999 999999999999999
Q ss_pred EEEEcccCCCCCHHHHHH-HHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEE
Q psy6612 162 LLILDEPTVGLDPILSQI-IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIG 220 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~-i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~ 220 (291)
+.+| ||+.+|..+... ++ +..+...+.|.|+.||++.....+|.|.+|+.|.+..
T Consensus 158 It~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~ 213 (249)
T cd01128 158 LTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKE 213 (249)
T ss_pred eEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccc
Confidence 9999 999999644433 43 4555445789999999999999999999999998743
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=117.81 Aligned_cols=68 Identities=22% Similarity=0.165 Sum_probs=58.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCCCCCCCCCHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQELALHGELSIR 102 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~ 102 (291)
..+|+++||++++|++++|+||||||||||++++. +|++.++|.++ +.++|++|+ +++ .|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 57899999999999999999999999999999986 89999999876 236777777 444 4999
Q ss_pred HHHHHh
Q psy6612 103 ETFRYY 108 (291)
Q Consensus 103 enl~~~ 108 (291)
|||.+.
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999864
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.9e-15 Score=147.33 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=71.0
Q ss_pred CcCChhHHHHHHHHHHHhcC----CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 140 GALSGGQQRRISFAVSLLHN----PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~----p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
..|||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++.+ +.+||++||++..+..||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHHhcCeEEEEEE
Confidence 36899999999999999985 699999999999999999999999999974 7999999999998877999999987
Q ss_pred CE
Q psy6612 216 DQ 217 (291)
Q Consensus 216 G~ 217 (291)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 63
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=128.50 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=93.4
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHH-HHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL-LNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTL-l~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
+.++++.+.+++ .+++|++++|.|||||||||| +++++++.++... +.|+..+
T Consensus 8 ~~~~~ld~~l~g---------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~-----------~~yi~~e------ 61 (230)
T PRK08533 8 LSRDELHKRLGG---------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS-----------VSYVSTQ------ 61 (230)
T ss_pred EEEeeeehhhCC---------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc-----------EEEEeCC------
Confidence 345667766654 389999999999999999999 6999988764322 3344322
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCC--
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGL-- 172 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgL-- 172 (291)
.+..+.+..... .+..-+ ++...=.+...+-. ..+|+++.++-.+++.+.. +|+++++||||+++
T Consensus 62 ~~~~~~~~~~~~-~g~~~~-------~~~~~~~l~~~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~ 132 (230)
T PRK08533 62 LTTTEFIKQMMS-LGYDIN-------KKLISGKLLYIPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN 132 (230)
T ss_pred CCHHHHHHHHHH-hCCchH-------HHhhcCcEEEEEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC
Confidence 245555443321 122111 11111011111111 2367776666665554433 69999999999999
Q ss_pred --CHHHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 173 --DPILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 173 --D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
|+...+.+.+.++++++.|.|+++ ||+...
T Consensus 133 ~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~ 164 (230)
T PRK08533 133 DASEVAVNDLMAFFKRISSLNKVIIL-TANPKE 164 (230)
T ss_pred CcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence 888889999999999877776655 555544
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=154.51 Aligned_cols=82 Identities=23% Similarity=0.186 Sum_probs=76.5
Q ss_pred CCCCcCcCChhHHHHHHHHHHHhc----------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLLH----------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~~----------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.++++..|||||++||+||+||+. +|++||+||||+|||+.+...+++.|..+...|++|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 467899999999999999999986 7999999999999999999999999999987789999999999999
Q ss_pred hh-hCeEEEEeCC
Q psy6612 205 KG-AHNIGLMRDD 216 (291)
Q Consensus 205 ~~-~d~i~~l~~G 216 (291)
.. ||+|.|++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 76 9999999764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.9e-15 Score=146.77 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=71.4
Q ss_pred CCcCcCChhHHHHHHHHHHHh----------cCCCEEEEcccC-CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 137 KIVGALSGGQQRRISFAVSLL----------HNPKLLILDEPT-VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~----------~~p~llllDEPt-sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
.++.+|||||+||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ .|.|||++||+.+...
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDPQ 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhchh
Confidence 356789999999999999988 599999999998 789999999999999998 5789999999987777
Q ss_pred hhCeEEEEeC-CEE
Q psy6612 206 GAHNIGLMRD-DQY 218 (291)
Q Consensus 206 ~~d~i~~l~~-G~i 218 (291)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7999999986 543
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=137.85 Aligned_cols=167 Identities=19% Similarity=0.231 Sum_probs=109.7
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------------CeEEEEcCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------------SDIGYMPQEL 93 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------------~~ig~v~q~~ 93 (291)
+..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.- +.+.++.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 99999999999999999999999999999999999998865432 1244554321
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCCh-hHHHHHHHHHHHhcCCCEEEEccc--CC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSG-GQQRRISFAVSLLHNPKLLILDEP--TV 170 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg-GqkQrv~iAral~~~p~llllDEP--ts 170 (291)
. ++.+-+.- ....-.+.|.+..-|-+-. --..+++- -|-+| .|+ +.+.|| |+
T Consensus 224 ~-----~~~~r~~~---------~~~a~~iAEyfr~~g~~Vl-l~~Dsltr~A~A~r-Eis---------l~~ge~P~~~ 278 (438)
T PRK07721 224 Q-----PALMRIKG---------AYTATAIAEYFRDQGLNVM-LMMDSVTRVAMAQR-EIG---------LAVGEPPTTK 278 (438)
T ss_pred C-----CHHHHHHH---------HHHHHHHHHHHHHCCCcEE-EEEeChHHHHHHHH-HHH---------HhcCCCCccc
Confidence 1 11111100 0001112233332232210 01112221 11111 111 123554 78
Q ss_pred CCCHHHHHHHHHHHHHhHh--CCc-----EEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 171 GLDPILSQIIWDRLKEMAL--NGK-----TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~--~g~-----tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
|+||.....+.+++.++.. .|. ||++.+||+++ ..||++..|.+|+++.++..
T Consensus 279 G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~l 338 (438)
T PRK07721 279 GYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQL 338 (438)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccH
Confidence 9999999999999999873 575 99999999995 45999999999999988754
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-14 Score=124.15 Aligned_cols=150 Identities=22% Similarity=0.215 Sum_probs=97.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
.++|+|+||||||||++.+.+.+.+ .| +. ..+|+.|+......... +. ....... ....
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G-~~-------~~g~~~~~~~~~~~~~~-----~~--~~~~~~~-----~~~~ 60 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EG-YK-------VGGFYTEEVREGGKRIG-----FK--IIDLDTG-----EEGI 60 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CC-Ce-------EEEEEcHHHHhcCCccc-----eE--EEEcCCC-----CeEE
Confidence 4789999999999999999887654 45 22 14555553211111111 00 0000000 0112
Q ss_pred HHHcCC-CC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc--CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 127 LKLLEL-PP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP--TVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 127 l~~~~l-~~--~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP--tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
+...+. .. ..+....+|++++-+..+++..+.+|+++++||| +.++|+. +.+.+.++.+.+.++|+++|+-
T Consensus 61 l~~~~~~~~~~~~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~----~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 61 LARVGFPSRPRVGKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPK----FVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred ccccCCCCCCceeeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHH----HHHHHHHHHhCCCeEEEEECch
Confidence 233333 21 2455678999999999999999999999999994 4455543 5566666655689999999995
Q ss_pred hHHhhhCeEEEEeCCEEEEE
Q psy6612 202 EEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 202 ~~~~~~d~i~~l~~G~i~~~ 221 (291)
.....+|++..+.+|++..-
T Consensus 137 ~~~~~~~~i~~~~~~~i~~~ 156 (174)
T PRK13695 137 SVHPFVQEIKSRPGGRVYEL 156 (174)
T ss_pred hhHHHHHHHhccCCcEEEEE
Confidence 44456999999999988543
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=118.43 Aligned_cols=143 Identities=15% Similarity=-0.015 Sum_probs=96.9
Q ss_pred EEEEECCCCccHHHHHHHH-HcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCI-VGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i-~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 125 (291)
++.|.||.|+|||||.--+ ....+. | ..+.|+.-+ .|..+.+..... ++.+.. +
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~--------g---~~v~~~s~e------~~~~~~~~~~~~-~g~~~~-------~ 55 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR--------G---EPGLYVTLE------ESPEELIENAES-LGWDLE-------R 55 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC--------C---CcEEEEECC------CCHHHHHHHHHH-cCCChH-------H
Confidence 3678999999999988543 322221 2 123344321 244444433222 233211 1
Q ss_pred HHHHcCCCC-CCCCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCC---HHHHHHHHHHHHHhHhCCcEEE
Q psy6612 126 ILKLLELPP-AKKIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLD---PILSQIIWDRLKEMALNGKTII 195 (291)
Q Consensus 126 ~l~~~~l~~-~~~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii 195 (291)
+...+... .+.++..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+++.|.|+|
T Consensus 56 -l~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi 134 (187)
T cd01124 56 -LEDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTL 134 (187)
T ss_pred -HHhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEE
Confidence 22234322 46788899999998 5555555678999999999999999 8888889999999987899999
Q ss_pred EEccCHhH---------Hhh-hCeEEEEeC
Q psy6612 196 ITTHYIEE---------AKG-AHNIGLMRD 215 (291)
Q Consensus 196 ~~tHd~~~---------~~~-~d~i~~l~~ 215 (291)
+++|+... +.. ||.++.|+.
T Consensus 135 ~v~~~~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 135 LTSEQSGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred EEeccccCCCcccCcCceeEeeeEEEEEEE
Confidence 99998765 444 888888863
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-13 Score=118.86 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=88.8
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCC-------CCCCCCH
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELA-------LHGELSI 101 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~-------l~~~ltv 101 (291)
+...+-+|++|+.++|++++|.||||+||||+++++++..-.. .|- |||-+.. +|..+..
T Consensus 15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------------~vpa~~~~i~~~~~i~~~~~~ 82 (218)
T cd03286 15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------------DVPAKSMRLSLVDRIFTRIGA 82 (218)
T ss_pred CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------------ccCccccEeccccEEEEecCc
Confidence 3567899999999999999999999999999999998864221 111 1221110 0111111
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh--HHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 102 RETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG--QQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG--qkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
.|++ ...+|.= +-+++.-....+.+|.++|+|||++|+|+.....
T Consensus 83 ~d~~---------------------------------~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~ 129 (218)
T cd03286 83 RDDI---------------------------------MKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYA 129 (218)
T ss_pred cccc---------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHH
Confidence 1111 1112221 2233333333357899999999999999999988
Q ss_pred HHHH-HHHhHhC-CcEEEEEccCHhHHhh
Q psy6612 180 IWDR-LKEMALN-GKTIIITTHYIEEAKG 206 (291)
Q Consensus 180 i~~~-l~~l~~~-g~tii~~tHd~~~~~~ 206 (291)
+... ++.+.+. +.++|++||+++.+..
T Consensus 130 la~ail~~L~~~~~~~~i~~TH~~el~~~ 158 (218)
T cd03286 130 IAHAVLEYLVKKVKCLTLFSTHYHSLCDE 158 (218)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHHHHH
Confidence 8888 6677655 8999999999999865
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-14 Score=140.10 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=69.3
Q ss_pred cCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 141 ALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
.|||||+||++||++++. +|+++|||||++|||+.+...+.+.|+++.+ +.+||+|||++..+..||+.+.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhCCEEEEEecc
Confidence 379999999999999997 5899999999999999999999999999964 68999999999988779999999874
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-14 Score=123.42 Aligned_cols=67 Identities=31% Similarity=0.429 Sum_probs=55.4
Q ss_pred CcCcCChhHHHHHHHHHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 138 IVGALSGGQQRRISFAVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 138 ~~~~LSgGqkQrv~iAral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
+...+|.|+||.+.++.++...+ .++++|||-++|+|..++.+++.|.+..+.+.-+|++||.+..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 34567999999999998888776 89999999999999999999999988876578999999998754
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.4e-14 Score=146.74 Aligned_cols=80 Identities=29% Similarity=0.302 Sum_probs=71.5
Q ss_pred CCCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 KKIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ~~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
++++..|||||+| |++||++++.+|+++||||||++||+..+..+.++|..+...+.+||++||+++....||+
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~ 862 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADY 862 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCe
Confidence 4788899999999 5556668889999999999999999999999999999987667899999999987666999
Q ss_pred EEEEeC
Q psy6612 210 IGLMRD 215 (291)
Q Consensus 210 i~~l~~ 215 (291)
+++|..
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-13 Score=135.46 Aligned_cols=133 Identities=23% Similarity=0.393 Sum_probs=106.8
Q ss_pred CCCCHHHHHHHhccccCCChHH---HHHHHHH------HHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC--CCEE
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQ---IETRSKE------ILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN--PKLL 163 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~---~~~~~~~------~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~--p~ll 163 (291)
..|++.+-..|+..+. .+..+ .+..+.+ .|-.+||.. ++|...+|||||.||+-||..+-.. -=++
T Consensus 427 ~~msi~~~~~f~~~l~-l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 427 SEMSIADALEFFENLK-LSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hhccHHHHHHHHHhCC-CchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 3578888877765443 11111 1111222 344568876 5899999999999999999998665 3478
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~~ 230 (291)
+||||+.||-+.-..++++.|++|++.|-|+|+|.||.+.+..||+++=| +.|+|+++|+++++.+.
T Consensus 506 VLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~ 578 (935)
T COG0178 506 VLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN 578 (935)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence 99999999999999999999999998899999999999999999999876 56799999999998765
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-13 Score=139.79 Aligned_cols=78 Identities=27% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCcCcCChhHHHHHHH------HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hC-C-cEEEEEccCHhHHhhh
Q psy6612 137 KIVGALSGGQQRRISF------AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LN-G-KTIIITTHYIEEAKGA 207 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~i------Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~-g-~tii~~tHd~~~~~~~ 207 (291)
.++..|||||++|++| |++|+.+|++++|||||++||+..+..+.++|.... .. + .|||++|||.+.+..|
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~ 876 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVA 876 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhc
Confidence 4688999999999975 599999999999999999999999999999998654 33 3 4899999999988779
Q ss_pred CeEEEEe
Q psy6612 208 HNIGLMR 214 (291)
Q Consensus 208 d~i~~l~ 214 (291)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=130.16 Aligned_cols=163 Identities=18% Similarity=0.144 Sum_probs=120.3
Q ss_pred EEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 20 VAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 20 l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
++.+.++..|. +..+++.+ |.+.+|+.++|+|+||+|||||+++|++..+|+.|.|.+.|+.-
T Consensus 131 ~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg--------------- 194 (432)
T PRK06793 131 FEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG--------------- 194 (432)
T ss_pred hheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc---------------
Confidence 34456666664 45788885 99999999999999999999999999999999988777666431
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHh-------cCCCEEEEcccC
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLL-------HNPKLLILDEPT 169 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~-------~~p~llllDEPt 169 (291)
.++.|++..... .-++.. .=....+.|.|+|+|++.+.+.+ .++-++++|+||
T Consensus 195 ~ev~e~~~~~l~------------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 195 REVKDFIRKELG------------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred ccHHHHHHHHhh------------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence 367766542111 111211 11345678999999999999887 789999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
...|+. +++...+.+.-..|.+..+.||....+++|-. ..+|.|.+-
T Consensus 257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~ 303 (432)
T PRK06793 257 RFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGI 303 (432)
T ss_pred HHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEE
Confidence 999986 66666776765458888888996555565443 467877653
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-13 Score=142.57 Aligned_cols=81 Identities=27% Similarity=0.263 Sum_probs=73.5
Q ss_pred CCCCcCcCChhHHHHHHHHHHHhc--------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLLH--------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~~--------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
.++++..|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+++.|+||+||||..+...+
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence 358899999999999999999996 899999999999999999999999999998789999999998887777
Q ss_pred -hCeEEEEeC
Q psy6612 207 -AHNIGLMRD 215 (291)
Q Consensus 207 -~d~i~~l~~ 215 (291)
..+|.|-..
T Consensus 1023 i~~qi~V~k~ 1032 (1047)
T PRK10246 1023 IPVQIKVKKI 1032 (1047)
T ss_pred ccceEEEEEC
Confidence 567777765
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.9e-12 Score=111.01 Aligned_cols=174 Identities=19% Similarity=0.167 Sum_probs=108.1
Q ss_pred EeeEeeee--EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 32 HVVLKGLN--LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 32 ~~~L~~vs--l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
.++++++- |++.+- |+.|+|.||+||||||..|+-....+ .| ++++...-.+. ++ -...+++.+.
T Consensus 23 lPa~r~l~~~LeF~ap-IT~i~GENGsGKSTLLEaiA~~~~~n~aG----g~~n~~~~~~~-s~------s~l~~~~k~~ 90 (233)
T COG3910 23 LPAFRHLEERLEFRAP-ITFITGENGSGKSTLLEAIAAGMGFNAAG----GGKNFKGELDA-SH------SALVDYAKLH 90 (233)
T ss_pred chHHHhhhhhccccCc-eEEEEcCCCccHHHHHHHHHhhccccccC----CCcCcCccccc-cc------chHHHhHHHh
Confidence 44555543 566554 99999999999999999987554322 22 11211100000 00 0122233221
Q ss_pred cccc---C-CChHHHHHHHHHHHHHcCCC--CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHH
Q psy6612 109 GYMF---D-MTDDQIETRSKEILKLLELP--PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182 (291)
Q Consensus 109 ~~~~---~-~~~~~~~~~~~~~l~~~~l~--~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~ 182 (291)
..-. + .-+.+.--.+...++.+.-+ ...+.....|.||-=---+.+.+. +--++|||||-++|.|.-+-.++.
T Consensus 91 ~~~k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella 169 (233)
T COG3910 91 KRKKPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLA 169 (233)
T ss_pred hcCCCCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHH
Confidence 1000 0 00000000111122222111 124556789999987777777664 558999999999999999999999
Q ss_pred HHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 183 RLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 183 ~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
.|+++++.|.-+||+||.+=++.. -.+|+-++.+.+
T Consensus 170 ~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~ 206 (233)
T COG3910 170 ILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI 206 (233)
T ss_pred HHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc
Confidence 999999999999999999988877 678999988754
|
|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.3e-13 Score=141.54 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 136 KKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+++ +.++|||||++..+..||+++
T Consensus 1084 ~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~~~d~~~ 1162 (1179)
T TIGR02168 1084 NQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTMEVADQLY 1162 (1179)
T ss_pred cccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHHHhhhHe
Confidence 4678899999999999999985 67799999999999999999999999999864 478999999999887799986
Q ss_pred EEe
Q psy6612 212 LMR 214 (291)
Q Consensus 212 ~l~ 214 (291)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 653
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=129.06 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=59.8
Q ss_pred hcCCCEEEEcccCCCC-CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh----------hhCeEEEEeCCEEEEEec
Q psy6612 157 LHNPKLLILDEPTVGL-DPILSQIIWDRLKEMALNGKTIIITTHYIEEAK----------GAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 157 ~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~----------~~d~i~~l~~G~i~~~~~ 223 (291)
..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.+. .|++.++|.+|++...+.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999888999999999999874 499999999998765543
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-12 Score=119.50 Aligned_cols=145 Identities=18% Similarity=0.211 Sum_probs=97.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
+++.++.|+.++|.||+|||||||+++|++++++..|.+.+... ..+ ...- .|. ......
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~--~El---------~~~~---~~~--~~l~~~---- 196 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDT--REI---------FLPH---PNY--VHLFYS---- 196 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCc--ccc---------CCCC---CCE--EEEEec----
Confidence 55778899999999999999999999999999998887766321 110 0000 000 000000
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
.........| ..-.++.+|-++|+++++|||.+ .+.+++++.+...+.+++.+
T Consensus 197 ----------------~~~~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~g~~~~i~T 249 (308)
T TIGR02788 197 ----------------KGGQGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNTGHPGSITT 249 (308)
T ss_pred ----------------CCCCCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhcCCCeEEEE
Confidence 0000011112 22356778899999999999996 34566777765333467999
Q ss_pred ccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 198 tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|..+.....+|+..|..|++.+.+.+.+...
T Consensus 250 ~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 250 LHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 99999666699999998888888777766553
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-12 Score=140.50 Aligned_cols=70 Identities=26% Similarity=0.308 Sum_probs=63.4
Q ss_pred CCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-----CCcEEEEEccCHhHHh
Q psy6612 137 KIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-----NGKTIIITTHYIEEAK 205 (291)
Q Consensus 137 ~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~tHd~~~~~ 205 (291)
...+.||||||| |++|||||+.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||++|||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 345789999999 99999999999999999999999999999999999988741 3789999999999986
Q ss_pred h
Q psy6612 206 G 206 (291)
Q Consensus 206 ~ 206 (291)
.
T Consensus 1275 ~ 1275 (1311)
T TIGR00606 1275 L 1275 (1311)
T ss_pred H
Confidence 4
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.4e-12 Score=123.45 Aligned_cols=149 Identities=21% Similarity=0.361 Sum_probs=99.8
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
++++.++.+++|++++++|||||||||++..|++.+.+..|. .+++++.++. ...++.|++.+++..++
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~--------~kV~LI~~Dt---~RigA~EQLr~~AeilG 313 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA--------SKVALLTTDS---YRIGGHEQLRIYGKILG 313 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC--------CeEEEEeCCc---cchhHHHHHHHHHHHhC
Confidence 566778888899999999999999999999999988776663 2478888886 34689999998877766
Q ss_pred CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHH-HHHHHHHHhcCC-----CEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 114 MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQR-RISFAVSLLHNP-----KLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQ-rv~iAral~~~p-----~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+........+......++.. ....+.+.+.+++- .+.-+.+++.++ .+|+||.++.+ ..+.+.++.
T Consensus 314 Vpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~------~~l~~i~~~ 387 (484)
T PRK06995 314 VPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG------DTLNEVVQA 387 (484)
T ss_pred CCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH------HHHHHHHHH
Confidence 543322333334445556644 23455664433332 223344444454 68999999887 345555566
Q ss_pred hHhCCcEEEEEcc
Q psy6612 187 MALNGKTIIITTH 199 (291)
Q Consensus 187 l~~~g~tii~~tH 199 (291)
+...+.+=++.|+
T Consensus 388 f~~~~~~g~IlTK 400 (484)
T PRK06995 388 YRGPGLAGCILTK 400 (484)
T ss_pred hccCCCCEEEEeC
Confidence 6545555555565
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=101.94 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=80.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
+++|.||||+||||+++.+++...+..|.+. |+..+.... ...++... . .....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~----------~~~~e~~~~---~~~~~~~~----~---------~~~~~ 54 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVV----------YVDIEEEIE---ELTERLIG----E---------SLKGA 54 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEE----------EEECCcchH---HHHHHHhh----h---------hhccc
Confidence 4789999999999999999998876545443 333332211 11111100 0 00000
Q ss_pred HHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC----------CCCHHHHHHHHHHHHHhHhCCcEEEE
Q psy6612 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV----------GLDPILSQIIWDRLKEMALNGKTIII 196 (291)
Q Consensus 127 l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts----------gLD~~~~~~i~~~l~~l~~~g~tii~ 196 (291)
.+.+. .........+.++.++...+++...+|+++++|||++ +.|......+.+++...++.+.|+++
T Consensus 55 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~ 132 (165)
T cd01120 55 LDNLI--IVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIF 132 (165)
T ss_pred cccEE--EEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEE
Confidence 00000 0112223445666778889999999999999999994 45555566666666666556899999
Q ss_pred EccCHhHH
Q psy6612 197 TTHYIEEA 204 (291)
Q Consensus 197 ~tHd~~~~ 204 (291)
++|.....
T Consensus 133 ~~~~~~~~ 140 (165)
T cd01120 133 TLQVPSGD 140 (165)
T ss_pred EEecCCcc
Confidence 99987544
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-12 Score=130.90 Aligned_cols=80 Identities=31% Similarity=0.339 Sum_probs=70.1
Q ss_pred CCcCcCChhHHH------HHHHHHHHhcC-----C-CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCc-EEEEEccCHhH
Q psy6612 137 KIVGALSGGQQR------RISFAVSLLHN-----P-KLLILDEPTVGLDPILSQIIWDRLKEMALNGK-TIIITTHYIEE 203 (291)
Q Consensus 137 ~~~~~LSgGqkQ------rv~iAral~~~-----p-~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~-tii~~tHd~~~ 203 (291)
.++..||||||| |+++|++++.+ | +++|+||||++||+..+..+.++|..+...|. +||++|||.+.
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~ 856 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL 856 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH
Confidence 346799999999 89999999864 3 67999999999999999999999999876564 89999999999
Q ss_pred HhhhCeEEEEeCC
Q psy6612 204 AKGAHNIGLMRDD 216 (291)
Q Consensus 204 ~~~~d~i~~l~~G 216 (291)
+..||+++.|...
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 9779999999753
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=106.50 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=87.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH-cCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIV-GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~-gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~ 119 (291)
-+++|.++.|.|++|||||||...++ +..+ .| .++.|+..+. +..+.+.-.. .+++.-.+.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g---------~~~~y~~~e~------~~~~~~~~~~-~~g~~~~~~ 82 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK--QG---------KKVYVITTEN------TSKSYLKQME-SVKIDISDF 82 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh--CC---------CEEEEEEcCC------CHHHHHHHHH-HCCCChhHH
Confidence 58899999999999999999998764 3222 12 2344544432 3333222111 122211110
Q ss_pred HHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc--CCCEEEEcccCCC---CCHHHHHHHHHHHHHhHhCCcEE
Q psy6612 120 ETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH--NPKLLILDEPTVG---LDPILSQIIWDRLKEMALNGKTI 194 (291)
Q Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~--~p~llllDEPtsg---LD~~~~~~i~~~l~~l~~~g~ti 194 (291)
.....+..+.+ .-......|.++++.+..++.++. +|+++++||||+. .|......+++.++.+++.|.|+
T Consensus 83 --~~~g~l~i~~~--~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tv 158 (234)
T PRK06067 83 --FLWGYLRIFPL--NTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTI 158 (234)
T ss_pred --HhCCCceEEec--cccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEE
Confidence 00001111111 112234567899999999999987 9999999999954 55555566666677777778999
Q ss_pred EEEccCHhH
Q psy6612 195 IITTHYIEE 203 (291)
Q Consensus 195 i~~tHd~~~ 203 (291)
++++|+...
T Consensus 159 llt~~~~~~ 167 (234)
T PRK06067 159 LITLHPYAF 167 (234)
T ss_pred EEEecCCcC
Confidence 999998654
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-12 Score=133.57 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=70.0
Q ss_pred CCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 136 KKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.+++..||||||++++||++|+. .|+++|||||+++||+.++..+.++|.++.. +.++|++||+...+..||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMIEYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHHHhcceeE
Confidence 35567899999999999999985 7899999999999999999999999999864 478999999998777799997
Q ss_pred EEeC
Q psy6612 212 LMRD 215 (291)
Q Consensus 212 ~l~~ 215 (291)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=102.12 Aligned_cols=119 Identities=18% Similarity=0.217 Sum_probs=74.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~ 125 (291)
++.|.||+||||||+++.+++.+.+. .|.|.....++ -|..+.. .+ + ...
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~---E~~~~~~-----~~------~---i~q------------ 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI---EFVHESK-----RS------L---INQ------------ 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc---cccccCc-----cc------e---eee------------
Confidence 78999999999999999988887643 56655433221 1111100 00 0 000
Q ss_pred HHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 126 ILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 126 ~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
..++. ....++. +++++|.++|+++++|||. |++....+ .+.+..|..++.++|..+...
T Consensus 54 --~~vg~-----~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 54 --REVGL-----DTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSAAK 113 (198)
T ss_pred --cccCC-----CccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcHHH
Confidence 00010 0111221 5889999999999999996 65543332 234456889999999998776
Q ss_pred hhCeEEEEe
Q psy6612 206 GAHNIGLMR 214 (291)
Q Consensus 206 ~~d~i~~l~ 214 (291)
.++|++.+.
T Consensus 114 ~~~Rl~~l~ 122 (198)
T cd01131 114 TIDRIIDVF 122 (198)
T ss_pred HHhHHHhhc
Confidence 689987774
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-11 Score=119.28 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=46.5
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEEECCEec
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQI 83 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~ 83 (291)
..+|++|||++++||+++|+|||||||||||+ +|+..|++| +|.++|.++
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 35899999999999999999999999999999 788888888 799999876
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-11 Score=103.67 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=72.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
++||.||||||||||.++|++++ ..|. +.+++++.. +..++..+........+..+.....+...+.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~----------~~v~~~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK----------VVIISQDSY-YKDLSHEELEERKNNNYDHPDAFDFDLLISH 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC----------eEEEEeccc-ccccccccHHHhccCCCCCCCcccHHHHHHH
Confidence 58999999999999999999987 2333 334444432 2222333332222222222222223344456
Q ss_pred HHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 127 l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+..+.... .+.+..++|.|++++..+ .+..|+++|+|.|+.+.++.
T Consensus 68 l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 68 LQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred HHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 66655543 567888999999887655 57889999999999999873
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=101.41 Aligned_cols=131 Identities=24% Similarity=0.376 Sum_probs=82.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC-Eec---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF-RQI---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g-~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
|.+..|+||.|+|||||.-.++-- ...|.=++.+ ... .++-|+.- ..+..+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~--va~G~~~~g~~~~~~~~~~Vlyi~~---------------------Ed~~~~i~ 57 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALA--MALGKNLFGGGLKVTEPGRVVYLSA---------------------EDPREEIH 57 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHH--HhcCccccCCccccCCCceEEEEEC---------------------CCCHHHHH
Confidence 678899999999999998776521 1223211110 000 11222221 11223445
Q ss_pred HHHHHHHHHcCCCCC-CCCcCcCChhHHHHHHHHH----------------HHhcCCCEEEEcccCCC------CCHHHH
Q psy6612 121 TRSKEILKLLELPPA-KKIVGALSGGQQRRISFAV----------------SLLHNPKLLILDEPTVG------LDPILS 177 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~-~~~~~~LSgGqkQrv~iAr----------------al~~~p~llllDEPtsg------LD~~~~ 177 (291)
+++..+...+++... ++.+. .+|+.|++.+++ +...+|+++++| |+++ +|+...
T Consensus 58 ~Rl~~i~~~~~~~~~~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~ 134 (239)
T cd01125 58 RRLEAILQHLEPDDAGDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAM 134 (239)
T ss_pred HHHHHHHhhcCCcCcccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHH
Confidence 566666666655332 22221 256666665554 446899999999 8764 799999
Q ss_pred HHHHHHHHHhHh-CCcEEEEEccCH
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTHYI 201 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tHd~ 201 (291)
..+++.|.++++ .|.||++++|..
T Consensus 135 ~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 135 DAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHHHHHHhCCEEEEEeccC
Confidence 999999999975 489999999986
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-11 Score=120.09 Aligned_cols=151 Identities=20% Similarity=0.314 Sum_probs=93.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHH--HcCCCCCccEEEECCEec--------CeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCI--VGRNTLDAGTIKLSFRQI--------SDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i--~gl~~p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
-+++|.++.|.||+|||||||..-+ .|...+.+.-+++....- ..+||-+++..- .+++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~------~g~l~---- 86 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVD------EGKLF---- 86 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhh------cCceE----
Confidence 4789999999999999999999765 455544444454432210 112221111000 00000
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHH--HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFA--VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iA--ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
....... .....+++.+++.. .++....+|+|++|||.|+ .+|...|+.. +..++.++++++.+
T Consensus 87 ~~~~~~~---~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L 153 (484)
T TIGR02655 87 ILDASPD---PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARL 153 (484)
T ss_pred EEecCch---hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHH
Confidence 0000000 00111233444433 4667788999999999999 5666665544 57788899999999
Q ss_pred HhCCcEEEEEccCHhH--------H-hh-hCeEEEEe
Q psy6612 188 ALNGKTIIITTHYIEE--------A-KG-AHNIGLMR 214 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~--------~-~~-~d~i~~l~ 214 (291)
++.|.|+|++||+.+. + +. ||.|+.|+
T Consensus 154 ~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 154 KQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 8889999999999764 2 44 89999886
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-09 Score=104.24 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=103.2
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
+..+++++ |.+.+|+.++|+|+||+|||||+++|+|...++.|.+...|..-+.+.....+ +... ...++..+...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~--~~~~-~~l~~tvvv~~ 225 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEH--DLGE-EGLKRSVVVVA 225 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHH--Hhcc-cccceEEEEEE
Confidence 46799999 99999999999999999999999999999999888776655432110000000 0000 00000000000
Q ss_pred ccCCChHH------HHHHHHHHHHHcCCCCCCCCcCcCCh-hHHHHHHHHHHHhcCCCEEEEccc--CCCCCHHHHHHHH
Q psy6612 111 MFDMTDDQ------IETRSKEILKLLELPPAKKIVGALSG-GQQRRISFAVSLLHNPKLLILDEP--TVGLDPILSQIIW 181 (291)
Q Consensus 111 ~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~LSg-GqkQrv~iAral~~~p~llllDEP--tsgLD~~~~~~i~ 181 (291)
....+.-. ..-.+.|.+...|-+-. -.+.+|+- -|-+| .++ +.+.|| +.|.||.....+.
T Consensus 226 ~~d~~p~~r~~~~~~a~t~AE~frd~G~~Vl-l~~DslTr~A~A~R-Eis---------l~~ge~P~~~Gypp~~~~~l~ 294 (440)
T TIGR01026 226 TSDQSPLLRLKGAYVATAIAEYFRDQGKDVL-LLMDSVTRFAMAQR-EIG---------LAAGEPPATKGYTPSVFSTLP 294 (440)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE-EEEeChHHHHHHHH-HHH---------HhcCCCCcccccChhHHHHHH
Confidence 00111100 01112222222232210 01122321 12222 222 345675 5699999999999
Q ss_pred HHHHHhHhCCc-------EEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 182 DRLKEMALNGK-------TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 182 ~~l~~l~~~g~-------tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
+++.+....+. ||++.+||+.+ ..||++..+.+|+++.+...
T Consensus 295 ~l~ERag~~~~GSIT~i~tVl~~~~d~~d-pi~d~~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 295 RLLERAGASGKGSITAFYTVLVEGDDMNE-PIADSVRGILDGHIVLSRAL 343 (440)
T ss_pred HHHHHhccCCCCeeeEEEEEEccCcCCCc-chhhhhccccceEEEEecch
Confidence 99999875566 88999999832 13899999999999876543
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=84.39 Aligned_cols=118 Identities=25% Similarity=0.278 Sum_probs=80.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
++..+.|+||+|+||||+++.++..+.... +-+.++...... .+..+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~----------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE-------------EVLDQLL----------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc-------------cCHHHHH-----------------
Confidence 367899999999999999999999987654 344443322100 0110000
Q ss_pred HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHH------HHHhHhCCcEEEE
Q psy6612 123 SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR------LKEMALNGKTIII 196 (291)
Q Consensus 123 ~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~------l~~l~~~g~tii~ 196 (291)
...........++++..+..+++|-..+|.++++||+..-.+.......... .......+..+|+
T Consensus 51 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 121 (148)
T smart00382 51 ---------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121 (148)
T ss_pred ---------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEE
Confidence 0011233455788888888899988888999999999999999888776641 2222234678888
Q ss_pred EccC
Q psy6612 197 TTHY 200 (291)
Q Consensus 197 ~tHd 200 (291)
++|.
T Consensus 122 ~~~~ 125 (148)
T smart00382 122 TTND 125 (148)
T ss_pred EeCC
Confidence 8884
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-10 Score=110.24 Aligned_cols=81 Identities=21% Similarity=0.262 Sum_probs=66.4
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE---ECCEec---------------CeEEEEcCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK---LSFRQI---------------SDIGYMPQE 92 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~---~~g~~~---------------~~ig~v~q~ 92 (291)
+..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+.+- .+++++ ..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 46799999 99999999999999999999999999999998864332 333222 248999999
Q ss_pred CCCCCCCCHHHHHHHhcccc
Q psy6612 93 LALHGELSIRETFRYYGYMF 112 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~ 112 (291)
...+..+++.+++.+.+.++
T Consensus 221 ~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CChhhhHHHHHHHHHHHHHh
Confidence 99999999999987655443
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-10 Score=107.52 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=57.4
Q ss_pred cCChhHHHHHHHHHHHhc---------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 141 ALSGGQQRRISFAVSLLH---------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~~---------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
.+|.||||++.||.+|+. +|++||||||+++||+..+..+++.|.+. |.+++++||+++.+.
T Consensus 275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLK 345 (365)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhcc
Confidence 589999999999999999 99999999999999999999999999864 679999999987753
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=115.40 Aligned_cols=80 Identities=31% Similarity=0.364 Sum_probs=71.7
Q ss_pred CCcCcCChhHHHHHHHHHHHh------cC--CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhC
Q psy6612 137 KIVGALSGGQQRRISFAVSLL------HN--PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAH 208 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~------~~--p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d 208 (291)
+++..|||||+=.++||.+|+ .+ -++++|||||..||+.+...++++|..+...+.+|++|||+-++...+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 688999999999888777654 45 6999999999999999999999999999877899999999999998999
Q ss_pred eEEEEeCC
Q psy6612 209 NIGLMRDD 216 (291)
Q Consensus 209 ~i~~l~~G 216 (291)
.++.++..
T Consensus 891 ~~i~V~k~ 898 (908)
T COG0419 891 VRIRVKKD 898 (908)
T ss_pred eEEEEEec
Confidence 98888653
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-10 Score=102.12 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
-+++|+++.|.||+|||||||...++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~ 41 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFA 41 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHH
Confidence 58899999999999999999987554
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.9e-10 Score=95.19 Aligned_cols=74 Identities=24% Similarity=0.205 Sum_probs=56.1
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCC--CCCCCCCHHHHHHH
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQEL--ALHGELSIRETFRY 107 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~--~l~~~ltv~enl~~ 107 (291)
+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..- ..+++++|.. ..++..+..+.+..
T Consensus 16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHH
Confidence 335567899999999999999999999999999999999999876431 2355655543 34555677777655
Q ss_pred hc
Q psy6612 108 YG 109 (291)
Q Consensus 108 ~~ 109 (291)
..
T Consensus 96 ~l 97 (186)
T cd01130 96 AL 97 (186)
T ss_pred Hh
Confidence 43
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.3e-09 Score=109.51 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=89.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
..+=+|+++. +.+.++.|.|||++||||+||.++-.. -..-| +|||-... .+++.+.+
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G------------~~VPa~~a---~i~~~d~I----- 653 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG------------SFVPAESA---RIGIVDRI----- 653 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC------------Cceeccce---EecccCee-----
Confidence 3456777787 677899999999999999999986432 11112 12222110 01111111
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc--CCCEEEEccc---CCCCCHHHHHHHHHHHH
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH--NPKLLILDEP---TVGLDPILSQIIWDRLK 185 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~--~p~llllDEP---tsgLD~~~~~~i~~~l~ 185 (291)
+..+|- .+.....+|.-|.....++.+|-. ++.++|+||| |+.+|. ....+.++.
T Consensus 654 ----------------~triga--~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg--~aia~aile 713 (854)
T PRK05399 654 ----------------FTRIGA--SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDG--LSIAWAVAE 713 (854)
T ss_pred ----------------eeccCc--ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchh--HHHHHHHHH
Confidence 112222 234456688888888888888765 9999999999 999994 445666777
Q ss_pred HhHhC-CcEEEEEccCHhHHhhhC
Q psy6612 186 EMALN-GKTIIITTHYIEEAKGAH 208 (291)
Q Consensus 186 ~l~~~-g~tii~~tHd~~~~~~~d 208 (291)
.+.+. +.++|++||+.+....++
T Consensus 714 ~l~~~~~~~~l~aTH~~el~~l~~ 737 (854)
T PRK05399 714 YLHDKIGAKTLFATHYHELTELEE 737 (854)
T ss_pred HHHhcCCceEEEEechHHHHHHhh
Confidence 77755 589999999966655444
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=103.35 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=64.2
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC---Eec-----------
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF---RQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g---~~~----------- 83 (291)
.++.+++++.|. +..+++.++ ++.+|+.++|+||||||||||+++|+++.+|+.|.|.+.| +++
T Consensus 139 ~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~ 217 (450)
T PRK06002 139 AMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADN 217 (450)
T ss_pred CeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHh
Confidence 567888999994 578999996 9999999999999999999999999999999999998854 433
Q ss_pred --CeEEEEcCCCC
Q psy6612 84 --SDIGYMPQELA 94 (291)
Q Consensus 84 --~~ig~v~q~~~ 94 (291)
+.+++++|...
T Consensus 218 r~rtI~vV~qsd~ 230 (450)
T PRK06002 218 LKKAVAVVATSDE 230 (450)
T ss_pred hCCeEEEEEcCCC
Confidence 35899998653
|
|
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.4e-08 Score=100.16 Aligned_cols=50 Identities=32% Similarity=0.455 Sum_probs=45.7
Q ss_pred HHhcCCCEEEEcccCCCCC-HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 155 SLLHNPKLLILDEPTVGLD-PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+..+|.++++|||...|| +..+..+.+.++.+++.|.+++++||+++++
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~ 688 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDA 688 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4567899999999999999 8999999999999988889999999999875
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.4e-09 Score=115.73 Aligned_cols=63 Identities=25% Similarity=0.453 Sum_probs=55.7
Q ss_pred CCCcCcCChhHHHHHH----HHHH--------HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 136 KKIVGALSGGQQRRIS----FAVS--------LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~----iAra--------l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
++.++.|||||||+++ +|++ +..+|++++|||||+|||+.++..++++|.++ +.++||+||.+
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4457899999999996 5755 55899999999999999999999999999988 68899999975
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=110.69 Aligned_cols=143 Identities=22% Similarity=0.259 Sum_probs=82.4
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHH-HHHHhccccCCC
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-TLDAGTIKLSFRQISDIGYMPQELALHGELSIRE-TFRYYGYMFDMT 115 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~e-nl~~~~~~~~~~ 115 (291)
+++..+.++++||+|++|+|||||++++.+.+ ...+|.+++++..+....-.++.. +..+ +...
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~------~~~~~~~~~-------- 265 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSA------NPDDYNMKL-------- 265 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccc------cccccchhH--------
Confidence 46778899999999999999999999996554 445888888653221111001100 0000 0000
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH---hCCc
Q psy6612 116 DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA---LNGK 192 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~---~~g~ 192 (291)
...++.+.++++..++ .+..+ ++.++| |..++-+++||+- |.. ..++.+.... ..|.
T Consensus 266 -~l~~~~l~~il~~~~~-----~~~~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l~~L~~~~~~~~~Gs 325 (1153)
T PLN03210 266 -HLQRAFLSEILDKKDI-----KIYHL-GAMEER------LKHRKVLIFIDDL----DDQ---DVLDALAGQTQWFGSGS 325 (1153)
T ss_pred -HHHHHHHHHHhCCCCc-----ccCCH-HHHHHH------HhCCeEEEEEeCC----CCH---HHHHHHHhhCccCCCCc
Confidence 0011223333333332 22222 556665 3456668888883 333 3344444432 3588
Q ss_pred EEEEEccCHhHHhh--hCeEEEEe
Q psy6612 193 TIIITTHYIEEAKG--AHNIGLMR 214 (291)
Q Consensus 193 tii~~tHd~~~~~~--~d~i~~l~ 214 (291)
+||++|||...+.. +|+++-+.
T Consensus 326 rIIiTTrd~~vl~~~~~~~~~~v~ 349 (1153)
T PLN03210 326 RIIVITKDKHFLRAHGIDHIYEVC 349 (1153)
T ss_pred EEEEEeCcHHHHHhcCCCeEEEec
Confidence 99999999999854 68776664
|
syringae 6; Provisional |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-08 Score=84.26 Aligned_cols=135 Identities=13% Similarity=0.120 Sum_probs=75.7
Q ss_pred EEEECCCCccHHHHHHHHH--cCCCCCccEEEECCE----ecCeEEEEcCC-CCCCC-----------------CCCHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIV--GRNTLDAGTIKLSFR----QISDIGYMPQE-LALHG-----------------ELSIRE 103 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~--gl~~p~~G~I~~~g~----~~~~ig~v~q~-~~l~~-----------------~ltv~e 103 (291)
++++|++|||||||++.|+ +..++.+|++..... .... .+.+-+ |.+.. .++..+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 6899999999999999999 677777766422110 0000 111111 21110 011112
Q ss_pred HHHHhcccc--CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHH-----hcCCCEEEEcccCCCCCH
Q psy6612 104 TFRYYGYMF--DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSL-----LHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 104 nl~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral-----~~~p~llllDEPtsgLD~ 174 (291)
++....... ..........+...+..++..- ...+...+|++++++....... ...|+++ |+|++|.
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~ 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKG 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCC
Confidence 221111111 1111123334555666666432 2334667899988877666542 3456665 9999999
Q ss_pred HHHHHHHHHHHHh
Q psy6612 175 ILSQIIWDRLKEM 187 (291)
Q Consensus 175 ~~~~~i~~~l~~l 187 (291)
....++++.|.++
T Consensus 157 ~~~~~l~~~l~~~ 169 (170)
T cd01876 157 QGIDELRALIEKW 169 (170)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999998765
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=96.06 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=75.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
.++.++.|.||+||||||+++++.+.+. +..|.|.....++. +. ++ +.. .....
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---~~------~~------~~~--~~i~q-------- 174 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---YV------HR------NKR--SLINQ-------- 174 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---hh------cc------Ccc--ceEEc--------
Confidence 4678999999999999999999998765 34566554322211 00 00 000 00000
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCH
Q psy6612 122 RSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~ 201 (291)
...+. + ..+ -.-++++||-++|+++++||+. |+.+....++ .+..|.+++.+.|-.
T Consensus 175 ------~evg~---~----~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 175 ------REVGL---D----TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----AAETGHLVFGTLHTN 230 (343)
T ss_pred ------cccCC---C----CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHHcCCcEEEEEcCC
Confidence 00010 0 011 1234778899999999999997 8887764443 345688999999987
Q ss_pred hHHhhhCeEEEE
Q psy6612 202 EEAKGAHNIGLM 213 (291)
Q Consensus 202 ~~~~~~d~i~~l 213 (291)
+.....+|++-|
T Consensus 231 ~~~~~~~Rl~~~ 242 (343)
T TIGR01420 231 SAAQTIERIIDV 242 (343)
T ss_pred CHHHHHHHHHHh
Confidence 666556666544
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.8e-08 Score=100.19 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=50.3
Q ss_pred HHHHHhcCCCEEEEcccCCCC-CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 152 FAVSLLHNPKLLILDEPTVGL-DPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgL-D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
|++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||+++.+.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~ 734 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAA 734 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 678889999999999999999 799999999999999888999999999999884
|
|
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.9e-09 Score=97.99 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=60.1
Q ss_pred cCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 141 ALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 141 ~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.+|+|||+++.+|+.|+ .+|++++||||+++||+..+..+.+.|.... .++|-+|+ ....||+++
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTE---APPGAALTL 336 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCC---CCCCCceEE
Confidence 48999999999999999 8999999999999999999999998886542 23333332 233489999
Q ss_pred EEeCCEEEE
Q psy6612 212 LMRDDQYIG 220 (291)
Q Consensus 212 ~l~~G~i~~ 220 (291)
.+.+|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999987654
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.6e-08 Score=99.92 Aligned_cols=109 Identities=22% Similarity=0.236 Sum_probs=74.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccE--------EEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGT--------IKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~--------I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~ 115 (291)
..+.++|+||||||||||+++|.+..++..|+ +.++|..+. .......+..+. . .
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~------------~d~~~i~~~llg-~----~ 236 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR------------WDPREVTNPLLG-S----V 236 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc------------CCHHHHhHHhcC-C----c
Confidence 45679999999999999999999988665443 555543220 000111121111 1 1
Q ss_pred hHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 116 DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+.....+.+.++.+|+.. ....+.++||| +|+||| +..||+..+..+++.|.+
T Consensus 237 ~~~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 237 HDPIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED 291 (615)
T ss_pred cHHHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence 1222234555678888865 56788899999 999999 899999999999999976
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.5e-08 Score=98.48 Aligned_cols=112 Identities=25% Similarity=0.298 Sum_probs=74.2
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECC---Eec------------CeEEEE-----
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSF---RQI------------SDIGYM----- 89 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g---~~~------------~~ig~v----- 89 (291)
+..+++++ |++.+|+.++|+|+||||||||+++|+|+.++ +.|.|.+.| +++ .+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45699998 99999999999999999999999999999854 446666644 333 135556
Q ss_pred cCCCC--CCCCC---CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC----C--CCCCcCcCCh
Q psy6612 90 PQELA--LHGEL---SIRETFRYYGYMFDMTDDQIETRSKEILKLLELP----P--AKKIVGALSG 144 (291)
Q Consensus 90 ~q~~~--l~~~l---tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~--~~~~~~~LSg 144 (291)
+|+|. +.+.+ ++.|++...+. .-....+...++.++++.+++. . ...+++.||.
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~g~-~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~ 294 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQGK-TVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST 294 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHcCC-CcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH
Confidence 88763 33333 33344332211 0011244567788899999983 1 3567777763
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=84.94 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCCC--CCCCcCcCChhHHHHHH--HHHHHhc-CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 122 RSKEILKLLELPP--AKKIVGALSGGQQRRIS--FAVSLLH-NPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 122 ~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~--iAral~~-~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
.+.++++..++.. .-.++..+|+|++|++. +++.+-. +++++ |+|++|..+...+.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 4445566666642 23467779999999987 6566544 34443 99999999999999999988654
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.2e-09 Score=88.66 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=32.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+||+++|+|+||||||||+++|+|++.+ +.++|.++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCccc
Confidence 6999999999999999999999999877 57777664
|
|
| >COG4637 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=85.87 Aligned_cols=73 Identities=30% Similarity=0.448 Sum_probs=63.2
Q ss_pred CcCChhHHHHHHHHHHHhc--CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEE
Q psy6612 140 GALSGGQQRRISFAVSLLH--NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLM 213 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~--~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l 213 (291)
.+||-|+-+-+++|.+|.. .|.++++|||-++|-|..-..+...+++.++++ -||++||..+++.. ...+++.
T Consensus 269 ~eLSDGTlRfl~l~t~Llsp~~p~ll~ldEPE~sLHP~lL~~La~~~~sAak~s-Qv~VsTHS~rLl~~~e~~~v~~~ 345 (373)
T COG4637 269 RELSDGTLRFLALATLLLSPRPPPLLLLDEPETSLHPDLLPALAELMRSAAKRS-QVIVSTHSPRLLNAVEEHSVFWL 345 (373)
T ss_pred hhccccHHHHHHHHHHHcCCCCCceeEecCcccccCHhHHHHHHHHHHHhhccc-eEEEEeCCHHHHhhccccceEEe
Confidence 3899999999999999986 589999999999999999999999999987654 89999999999965 3334444
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.8e-08 Score=84.32 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=90.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
+++|.|.-||||||+.+.+.... |-..++-. .+...+.-. . . ....++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~----~~~~i~~D------------------~~~~~~~~~------~-~---~~~~~i 48 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY----HFPVIDAD------------------KIAHQVVEK------G-S---PAYEKI 48 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc----CCeEEeCC------------------HHHHHHHhc------C-C---hHHHHH
Confidence 47999999999999999988653 11122211 111111100 0 0 112334
Q ss_pred HHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH--H
Q psy6612 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE--A 204 (291)
Q Consensus 127 l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~--~ 204 (291)
.+.||-.-.+. .|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..+.|.+|++.+|.+.+ +
T Consensus 49 ~~~fg~~i~~~------~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~ 120 (188)
T TIGR00152 49 VDHFGAQILNE------DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKL 120 (188)
T ss_pred HHHHCHHHhCC------CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCc
Confidence 55555221111 388999999999999999988887 8899999999999999886566899999999966 4
Q ss_pred hh-hCeEEEEeCC
Q psy6612 205 KG-AHNIGLMRDD 216 (291)
Q Consensus 205 ~~-~d~i~~l~~G 216 (291)
.. ||.++++..+
T Consensus 121 ~~~~D~vv~V~~~ 133 (188)
T TIGR00152 121 RSLCDRVIVVDVS 133 (188)
T ss_pred HHhCCEEEEEECC
Confidence 44 9999998754
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.4e-08 Score=92.86 Aligned_cols=64 Identities=23% Similarity=0.399 Sum_probs=55.0
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEECCEec-------------CeEEEEcCCC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQI-------------SDIGYMPQEL 93 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~-------------~~ig~v~q~~ 93 (291)
.+..+++++ +++.+|++++|+|+||+|||||+++|+++..++. |.|..+|+++ +++++|+...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456899999 9999999999999999999999999999999887 8888888765 3467777654
Q ss_pred C
Q psy6612 94 A 94 (291)
Q Consensus 94 ~ 94 (291)
.
T Consensus 216 d 216 (428)
T PRK08149 216 D 216 (428)
T ss_pred C
Confidence 3
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.3e-08 Score=97.66 Aligned_cols=62 Identities=26% Similarity=0.265 Sum_probs=57.8
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+.++++.||...+++++++.+..|+.++++||||||||||+++|.|+++|.+|++.+.+..+
T Consensus 187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 35888899998999999999999999999999999999999999999999999999887665
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-08 Score=94.31 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=54.3
Q ss_pred EEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 20 VAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 20 l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
++.+.++..+ .+..+++++ |++.+|+.++|+|+||+|||||+++|+|+..++.|.+.+.|+.
T Consensus 130 ~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR 192 (433)
T PRK07594 130 MVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER 192 (433)
T ss_pred eeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence 4456667777 468899999 9999999999999999999999999999999999988777754
|
|
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.4e-07 Score=93.27 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=50.0
Q ss_pred HhcCCCEEEEcccCCCCC-HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh----------hhCeEEEEeC
Q psy6612 156 LLHNPKLLILDEPTVGLD-PILSQIIWDRLKEMALNGKTIIITTHYIEEAK----------GAHNIGLMRD 215 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~----------~~d~i~~l~~ 215 (291)
+-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||+++.+. .|+..++|.+
T Consensus 632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~ 702 (811)
T PRK13873 632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPN 702 (811)
T ss_pred hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCC
Confidence 445899999999999999 78899999999999888999999999998653 2555556655
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=89.03 Aligned_cols=51 Identities=33% Similarity=0.438 Sum_probs=46.1
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
.+..+++++ |.+.+|+.++|+|+||+|||||+++|+|...|+.|.+...|+
T Consensus 55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 356799999 999999999999999999999999999999999887776554
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-06 Score=77.56 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=36.3
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHH-HhHh-CCcEEEEEccCHhHHh
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLK-EMAL-NGKTIIITTHYIEEAK 205 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~-~l~~-~g~tii~~tHd~~~~~ 205 (291)
.+..++|+||+..|=++.....+...+. .+.+ .+..++++||+.+...
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 4567999999999999988877766554 4566 4788999999998764
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-06 Score=78.48 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=83.2
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
+.+.|+++.--+.+|+++.|.||+|+|||||+..++.......| .++.|+.-+. +..+.......
T Consensus 16 g~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g---------~~vl~iS~E~------~~~~~~~r~~~ 80 (271)
T cd01122 16 PFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHG---------VRVGTISLEE------PVVRTARRLLG 80 (271)
T ss_pred CcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC---------ceEEEEEccc------CHHHHHHHHHH
Confidence 35678888889999999999999999999999877654432212 1244443221 22222211100
Q ss_pred -ccCC--C-----hHHHHHHHHHHHHHcC-CCC--CCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCHH--
Q psy6612 111 -MFDM--T-----DDQIETRSKEILKLLE-LPP--AKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPI-- 175 (291)
Q Consensus 111 -~~~~--~-----~~~~~~~~~~~l~~~~-l~~--~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~~-- 175 (291)
..+. . .....+.+..+.+.+. ... ........+ ....+..++.++ .+|+++++|..+.-.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~ 158 (271)
T cd01122 81 QYAGKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERA 158 (271)
T ss_pred HHhCCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhccCCC
Confidence 0000 0 0111122333333321 111 111112222 234445555554 479999999977654331
Q ss_pred ------HHHHHHHHHHHhH-hCCcEEEEEccC
Q psy6612 176 ------LSQIIWDRLKEMA-LNGKTIIITTHY 200 (291)
Q Consensus 176 ------~~~~i~~~l~~l~-~~g~tii~~tHd 200 (291)
....++..|++++ +.+.||++++|-
T Consensus 159 ~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 159 SGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 2345666677776 458999999984
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.7e-08 Score=85.42 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=31.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
-.+..++||.||||||||||+++|++++++++|.+
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~ 64 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELP 64 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence 34567999999999999999999999999999983
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=71.94 Aligned_cols=51 Identities=31% Similarity=0.503 Sum_probs=39.4
Q ss_pred CCCcCcCChhHHH-HHHHHHH------Hhc------CCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 136 KKIVGALSGGQQR-RISFAVS------LLH------NPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 136 ~~~~~~LSgGqkQ-rv~iAra------l~~------~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+..+.+|||||| .+.+|.+ +.. .|++++|||||++||+.....++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4678899999994 4444333 223 3799999999999999999999999875
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-07 Score=91.52 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=55.5
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe---c------------CeEEEEcCCCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ---I------------SDIGYMPQELAL 95 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---~------------~~ig~v~q~~~l 95 (291)
+..+++++ |++.+|+.++|+|+||+|||||+++|+|...|+.|.+...|.. + .+.+.++++...
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~ 210 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSD 210 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEecccc
Confidence 56799999 9999999999999999999999999999999999988775442 2 124566776665
Q ss_pred CCCC
Q psy6612 96 HGEL 99 (291)
Q Consensus 96 ~~~l 99 (291)
++.+
T Consensus 211 ~p~~ 214 (422)
T TIGR02546 211 RPSL 214 (422)
T ss_pred CCHH
Confidence 5544
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.9e-07 Score=90.21 Aligned_cols=138 Identities=18% Similarity=0.186 Sum_probs=78.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+.+|+++.|.|++|+|||||+..++.......+.+ -|+.-+ .+..+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kv----------lYvs~E------Es~~qi~~-------------- 139 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKV----------LYVSGE------ESLQQIKM-------------- 139 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcE----------EEEECc------CCHHHHHH--------------
Confidence 589999999999999999999998877654433332 233221 12222111
Q ss_pred HHHHHHHHHcCCCCCC-CCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC---------CHHHHHHHHHHHHHhH-h
Q psy6612 121 TRSKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL---------DPILSQIIWDRLKEMA-L 189 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~-~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL---------D~~~~~~i~~~l~~l~-~ 189 (291)
+ ++.+++...+ ....+.+- .+-... +--.+|+++++|.-++=. +....+++...|.+++ +
T Consensus 140 -r----a~rlg~~~~~l~~~~e~~~--~~I~~~--i~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~ 210 (454)
T TIGR00416 140 -R----AIRLGLPEPNLYVLSETNW--EQICAN--IEEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKT 210 (454)
T ss_pred -H----HHHcCCChHHeEEcCCCCH--HHHHHH--HHhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 0 0111111000 00011111 111111 123589999999765421 1233455566677765 5
Q ss_pred CCcEEEEEccCHhH--------Hhh-hCeEEEEeCCE
Q psy6612 190 NGKTIIITTHYIEE--------AKG-AHNIGLMRDDQ 217 (291)
Q Consensus 190 ~g~tii~~tHd~~~--------~~~-~d~i~~l~~G~ 217 (291)
.|.|+++++|...+ ++. +|.+++|+.++
T Consensus 211 ~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 211 RGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred hCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 69999999997554 455 89999997653
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=77.76 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=42.4
Q ss_pred cCCCEEEEcccCC------CCCHHHHHHHHHHHHHhHhCCcEEEEEccCH---------hHHhh-hCeEEEEe
Q psy6612 158 HNPKLLILDEPTV------GLDPILSQIIWDRLKEMALNGKTIIITTHYI---------EEAKG-AHNIGLMR 214 (291)
Q Consensus 158 ~~p~llllDEPts------gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~---------~~~~~-~d~i~~l~ 214 (291)
.+++.+++| |.+ +.|...+..+.++++.+++.|.|+++++|.- ..++. ||.+++|+
T Consensus 106 ~~~~~vVID-sls~l~~~~~~~~~~r~~l~~l~~~lk~~~~tvll~s~~~~~~~~~~~~~~~~~l~D~vI~L~ 177 (224)
T TIGR03880 106 LGASRVVID-PISLLETLFDDDAERRTELFRFYSSLRETGVTTILTSEADKTNVFASKYGLIEYLADGVIILK 177 (224)
T ss_pred hCCCEEEEc-ChHHHhhhcCCHHHHHHHHHHHHHHHHhCCCEEEEEEcccCCCCCccCCCceEEEEeEEEEEe
Confidence 368899999 544 4455567888889999988899999999952 22444 88888885
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.8e-08 Score=88.87 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=41.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC--CCccEEEECCEec--------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIKLSFRQI--------SDIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~--------~~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
-.++||.||||||||||+++|.+++. |++|.|.+-+.+- ...+++ |...+++.+++.+.+.+
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~ 133 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKF 133 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHH
Confidence 35999999999999999999999987 7788876633321 123332 44444455555554443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-07 Score=89.56 Aligned_cols=73 Identities=23% Similarity=0.312 Sum_probs=59.0
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
-++.+.-.+.+|++++|+|+||+|||||+++|+|...++.|+|.+++..- +.+++++|...+++. +...++.+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l 262 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQL 262 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhcc
Confidence 35566667889999999999999999999999999999999999876432 468899998877753 55555543
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.49 E-value=7.8e-08 Score=68.48 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=31.6
Q ss_pred EeeeeEEEeC-CcEEEEECCCCccHHHHHHHHHcCCCCCc
Q psy6612 35 LKGLNLNVPE-NKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73 (291)
Q Consensus 35 L~~vsl~i~~-Gei~~liGpNGaGKSTLl~~i~gl~~p~~ 73 (291)
+++-.+++.+ |+++.|.|||||||||++.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4456677775 57999999999999999999987776644
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.4e-07 Score=73.21 Aligned_cols=109 Identities=20% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 123 (291)
.+..+.|.||.|+|||||++.++.........+ .++.... ........ .
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v----------~~~~~~~-------~~~~~~~~-------------~- 66 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPF----------LYLNASD-------LLEGLVVA-------------E- 66 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCe----------EEEehhh-------hhhhhHHH-------------H-
Confidence 578899999999999999999998875222222 1211100 00000000 0
Q ss_pred HHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-----CCcEEEEEc
Q psy6612 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-----NGKTIIITT 198 (291)
Q Consensus 124 ~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-----~g~tii~~t 198 (291)
..... .+......+...++.++++||.-.. ++.....+.+.+..+.. .+.++|++|
T Consensus 67 --~~~~~----------------~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 67 --LFGHF----------------LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred --Hhhhh----------------hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 00000 5566667777889999999998665 66777888888888753 467889998
Q ss_pred cCHh
Q psy6612 199 HYIE 202 (291)
Q Consensus 199 Hd~~ 202 (291)
++..
T Consensus 128 ~~~~ 131 (151)
T cd00009 128 NRPL 131 (151)
T ss_pred Cccc
Confidence 8654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-07 Score=90.61 Aligned_cols=63 Identities=25% Similarity=0.310 Sum_probs=53.3
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc---cEEEECCEec------------CeEEEEcCCCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA---GTIKLSFRQI------------SDIGYMPQELA 94 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~---G~I~~~g~~~------------~~ig~v~q~~~ 94 (291)
+..+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|.+.|+++ .+.++|+|+..
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~a 239 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPA 239 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECC
Confidence 35577766 9999999999999999999999999999999985 8898888876 24677777654
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.1e-08 Score=85.52 Aligned_cols=29 Identities=38% Similarity=0.456 Sum_probs=27.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
++|++++|.||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 68999999999999999999999999764
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-07 Score=80.73 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=30.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
|++++|+||||||||||+++|++...+ .+.+.+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~ 37 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYI 37 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEEC
Confidence 789999999999999999999998866 466666544
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-07 Score=88.89 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=36.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.+|++++++|||||||||++..|++.+.+..|+|.+.+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 57999999999999999999999999998888998866554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 291 | ||||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-19 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-18 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-17 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-17 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-17 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 6e-17 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-16 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-16 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-16 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-16 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 6e-16 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-16 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 7e-16 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-16 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-15 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-15 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-15 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-15 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-15 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-14 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-14 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-14 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-14 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 8e-14 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-13 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-13 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-13 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-13 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-13 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-13 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-13 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-12 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-11 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-11 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-11 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 3e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-09 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-09 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-09 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-09 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 7e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 8e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 2e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-08 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-08 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 3e-08 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 4e-08 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-08 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 7e-08 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-08 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-07 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-07 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-07 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 5e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 5e-07 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 6e-07 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 8e-07 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 3e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 4e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 4e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 5e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 6e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 5e-04 |
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-62
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 20/235 (8%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+ VK K+IG +LKG++ + E +I+GL+GP+G GKTT L I
Sbjct: 15 AVVVKDLR------KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS 68
Query: 73 AGTIKLSFRQISD--------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
+G + + + + + I Y+P+E + + E R+ + + +IE +
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVE 128
Query: 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
++ L K V S G R++ A +L+ NP+L ILDEPT GLD + ++ +
Sbjct: 129 RATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188
Query: 184 LKEMALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
LK+ + G TI++++H + E I L+ + G +V VE L E +
Sbjct: 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALIHN----GTIVETGTVEELKERYKA 239
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 4e-57
Identities = 42/197 (21%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+E++ ++ V+ + + + + + + GP+G GKTTLL I
Sbjct: 10 KLEIRD---LS---VGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 73 AGTIKLSFRQISD----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
G I + I+ I ++P+E+ + ++S+ + + ++ + + + + L+
Sbjct: 63 KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN--KNEIMDALE 120
Query: 129 LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+E+ KK +G LS G RR+ A +LL N ++ +LD+P V +D + + E+
Sbjct: 121 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 189 LN-GKTIIITTHYIEEA 204
G II + +
Sbjct: 181 KEKGIVIISSREELSYC 197
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-47
Identities = 65/273 (23%), Positives = 119/273 (43%), Gaps = 38/273 (13%)
Query: 6 IKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI 65
+ R +I++ + +LK ++ + + + L G +G GKTTLLN +
Sbjct: 14 VPRGSHMLIQLDQ---IGRMK---QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL 67
Query: 66 VGRNTLDAGTIKL----------SFRQI-SDIGYMPQELA--LHGELSIRET-----FRY 107
+GT+ L S + IG++ L + + F+
Sbjct: 68 NAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127
Query: 108 YGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
G D+ D+ + ++LKL+ + A++ +G LS G+++R+ A +L+ P++LILD
Sbjct: 128 IGVYQDIDDEIRN-EAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILD 186
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGK--TIIITTHYIEEA-KGAHNIGLMRDDQYIGRLV 223
EP GLD I + + L ++ + +I TH+IEE I L++D G+ +
Sbjct: 187 EPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKD----GQSI 242
Query: 224 HHDIVESLV--EALEDALRHGNVINKVDLVDGR 254
VE ++ E + NV V + R
Sbjct: 243 QQGAVEDILTSENMSRFF-QKNV--AVQRWNNR 272
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-38
Identities = 57/257 (22%), Positives = 106/257 (41%), Gaps = 26/257 (10%)
Query: 13 IIEVKHSVAVTSAYK-KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV----- 66
+I++K+ V K L+ +NL V + +LGP+G GKTTLL I
Sbjct: 1 MIQLKN---VGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPY 56
Query: 67 -GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G ++ ++ I +P+ + +++ + Y + + D E
Sbjct: 57 SGNIFINGMEVRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGLDRDLF----LE 110
Query: 126 ILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
+LK L+L ++ + LS GQ + +++L P+++ LDEP +D +I
Sbjct: 111 MLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170
Query: 184 LKEMALNGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHG 242
+KE GK I+ TH ++ RL V L+E+
Sbjct: 171 IKEY---GKEGILVTHELDMLNLYKEYKAYFLVG---NRLQGPISVSELLESSIVEGERN 224
Query: 243 NVINKVDLVDGRGSIDE 259
+ + +D++D + SI +
Sbjct: 225 DALLVLDIMDKKVSIVK 241
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-37
Identities = 54/217 (24%), Positives = 105/217 (48%), Gaps = 22/217 (10%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+ + V++ + Y+ + + + LN ++ + I +LG +GCGK+TLL+ ++G +
Sbjct: 3 KALSVEN---LGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRET-----FRYYGYMFDMT--DDQIETRSK 124
G I++ IG++PQ + S+ + + D Q+ ++
Sbjct: 58 IQGKIEVYQS----IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQAL 113
Query: 125 EILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI-IWDR 183
+ L L L AK+ +LSGGQ++ I A ++ KL++LDEPT LD + +Q +
Sbjct: 114 DYLNLTHL--AKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD-LANQDIVLSL 170
Query: 184 LKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQY 218
L ++A + T++ TTH + A+ L+ +
Sbjct: 171 LIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-32
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 36/220 (16%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K N VL ++L++ +I ++G SGCGKTTLL C+ G D+G I LS + I
Sbjct: 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSK 71
Query: 85 ---------DIGYMPQELAL--HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP 133
+GY+ QE L H L++ Y Q R + +L+L +
Sbjct: 72 NTNLPVRERRLGYLVQEGVLFPH--LTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS 129
Query: 134 P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL--- 189
A + LSGGQQ+R + A +L +P+L++LDEP LD L R +++
Sbjct: 130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQL------R-RQIREDMI 182
Query: 190 -----NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223
NGK+ + +H EEA A I +M+ GR++
Sbjct: 183 AALRANGKSAVFVSHDREEALQYADRIAVMKQ----GRIL 218
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 4e-32
Identities = 58/277 (20%), Positives = 108/277 (38%), Gaps = 24/277 (8%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
+ + + KK VL +++I ++G +G GKTTL+ + G
Sbjct: 343 EDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
Query: 70 TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK--EIL 127
D G + PQ++A ++R+ F F Q +++
Sbjct: 403 KPDEGQDIPKLN----VSMKPQKIAPKFPGTVRQLF------FKKIRGQFLNPQFQTDVV 452
Query: 128 KLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186
K L + + V LSGG+ +R++ ++L + ++DEP+ LD I ++
Sbjct: 453 KPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 187 MALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDALRHGNV 244
L+ KT I H A A + + + H ESL+ L++ NV
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIP--SKNAHARAPESLLTGCNRFLKNLNV 570
Query: 245 INKVDLVDGRGSIDEVLSRQCTVSVDVDRPAINEGDY 281
+ D R I+++ S+ +D+ + G+Y
Sbjct: 571 TFRRDPNSFRPRINKLDSQ-------MDKEQKSSGNY 600
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-21
Identities = 44/217 (20%), Positives = 80/217 (36%), Gaps = 28/217 (12%)
Query: 5 SIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC 64
+I+ I+ H VT Y N L L ++ GL+G +G GK+T L
Sbjct: 69 AIQIINLPTNLEAH---VTHRYS--ANSFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKI 122
Query: 65 IVGRNTLDAGTIKLSFRQISDIGYMP-QELALHGE--------------------LSIRE 103
+ G+ + G I Y EL + +I+
Sbjct: 123 LAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKG 182
Query: 104 TFRYYGYMFDMTDDQIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKL 162
+ G + + ++ K +K+L+L K+ + LSGG+ +R + +S + +
Sbjct: 183 PVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADV 242
Query: 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ DEP+ LD ++ + K +I H
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-32
Identities = 60/271 (22%), Positives = 107/271 (39%), Gaps = 18/271 (6%)
Query: 2 RKISIKRIDPEIIEVKHSVAVTSAYK-----KIGNHVVLKGLNLNVPENKIYGLLGPSGC 56
R IK + E+ ++ S + + K K L N E +I G+LGP+G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGI 305
Query: 57 GKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-YYGYMFDMT 115
GKTT +VG T D G++ + + Y PQ + + + ++++ +
Sbjct: 306 GKTTFARILVGEITADEGSVTP---EKQILSYKPQRIFPNYDGTVQQYLENASKDALSTS 362
Query: 116 DDQIETRSKEILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174
E E+ K L L V LSGG+ +++ A +L L +LD+P+ LD
Sbjct: 363 SWFFE----EVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418
Query: 175 ILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLV 232
I+ +K + I H + A I + + + + +L
Sbjct: 419 EERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE--PEKAGLATSPVTLK 476
Query: 233 EALEDALRHGNVINKVDLVDGRGSIDEVLSR 263
+ + LR V + D GR ++++ S
Sbjct: 477 TGMNEFLRELEVTFRRDAETGRPRVNKIGSY 507
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 3e-23
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 25/197 (12%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVP-ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLS- 79
V YK G K L P N I G+LG +G GKTT+L + G + G
Sbjct: 5 VIHRYKVNG----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 80 -----FRQI--SDIGYMPQELALHGELSIRETFRYYGYMFD---------MTDDQIETRS 123
++ +I +EL EL I +Y Y +T +
Sbjct: 61 GKDEVLKRFRGKEIYNYFKEL-YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKK 119
Query: 124 KEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
E+ +LL + K LSGG +R+ A SLL + I D+P+ LD +
Sbjct: 120 DEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179
Query: 183 RLKEMALNGKTIIITTH 199
++E+ K +I+ H
Sbjct: 180 AIRELL-KNKYVIVVDH 195
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-31
Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 15/197 (7%)
Query: 7 KRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66
K + +E + V K G+ L+ + + ++ G++GP+G GKTT + +
Sbjct: 345 KLSERVDVERETLVEYPRLVKDYGSFK-LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLA 403
Query: 67 GRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-- 124
G G ++ + Y PQ + E ++ E + ++ +
Sbjct: 404 GVEEPTEGKVEWDLT----VAYKPQYIKAEYEGTVYELLS------KIDSSKLNSNFYKT 453
Query: 125 EILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR 183
E+LK L + + V LSGG+ +R++ A +LL + + +LDEP+ LD +
Sbjct: 454 ELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRA 513
Query: 184 LKEMALN-GKTIIITTH 199
++ + KT ++ H
Sbjct: 514 IRHLMEKNEKTALVVEH 530
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-22
Identities = 36/192 (18%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDI 86
+ G + + V + + G++GP+G GKTT + + G+ + S+ + I
Sbjct: 99 HRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNV--I 156
Query: 87 GYMPQELALHGELSIRE-----TFRYYGYMFD-------------MTDDQIETRSKEILK 128
+ ++ + D + + +E++K
Sbjct: 157 RAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVKGKVRELLKKVDEVGKFEEVVK 214
Query: 129 LLEL-PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187
LEL + + LSGG+ +R++ A +LL DEP+ LD + ++ +
Sbjct: 215 ELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274
Query: 188 ALNGKTIIITTH 199
A GK +++ H
Sbjct: 275 ANEGKAVLVVEH 286
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 41/202 (20%), Positives = 85/202 (42%), Gaps = 14/202 (6%)
Query: 2 RKISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTL 61
+I + + + ++ K L+ + + ++ G++GP+G GKTT
Sbjct: 269 YEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTF 328
Query: 62 LNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
+ + G G I+ ++ Y PQ + E ++ E + ++ +
Sbjct: 329 VKMLAGVEEPTEGKIEWDL-TVA---YKPQYIKADYEGTVYELL------SKIDASKLNS 378
Query: 122 RSK--EILKLLELPPAK-KIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
E+LK L + + V LSGG+ +R++ A +LL + + +LDEP+ LD
Sbjct: 379 NFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 438
Query: 179 IIWDRLKEMALN-GKTIIITTH 199
+ ++ + KT ++ H
Sbjct: 439 AVSRAIRHLMEKNEKTALVVEH 460
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-19
Identities = 42/211 (19%), Positives = 82/211 (38%), Gaps = 33/211 (15%)
Query: 12 EIIEVKH-SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70
++ Y N VL L + V E + G++GP+G GK+T + + G+
Sbjct: 16 PRSHMEQLEEDCVHRYGV--NAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 71 LDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMF-----DMTD--------- 116
+ S+ + + EL + ++ G + D
Sbjct: 73 PNLCGDNDSWDGVIR-AFRGNELQNY-FEKLKN-----GEIRPVVKPQYVDLIPKAVKGK 125
Query: 117 -------DQIETRSKEILKLLELPPA-KKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ +E++K LEL ++ + LSGG+ +R++ A +LL N DEP
Sbjct: 126 VIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEP 185
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
+ LD ++ ++ GK++++ H
Sbjct: 186 SSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 5e-29
Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
IE V Y G ++G++ + E ++ GLLGPSG GKTT+L I G
Sbjct: 14 TIEFVG---VEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 73 AGTIKLSFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
G + + ++++ ++G + Q AL +++ + + + D+++ R +E
Sbjct: 69 KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRE 128
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+L+ + L A + LSGGQQ+R++ A +L P++L+ DEP +D + + + +
Sbjct: 129 LLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188
Query: 185 KEMALN-GKTIIITTHYIEEA 204
+++ G T + TH EEA
Sbjct: 189 RQVHDEMGVTSVFVTHDQEEA 209
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-28
Identities = 66/255 (25%), Positives = 101/255 (39%), Gaps = 49/255 (19%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
I++V+ + Y LKG+N+N+ ++ +LG +G GK+TL G
Sbjct: 7 ILKVEE---LNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 73 AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ-------------- 118
+G I + I I + G +F D+Q
Sbjct: 62 SGRILFDNKPIDY-----------SRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGA 110
Query: 119 ---------IETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
I R LK + K LS GQ++R++ A L+ PK+LILDEP
Sbjct: 111 VNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170
Query: 169 TVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLVHHD 226
T GLDP+ I L EM G TIII TH I+ N+ +M++ GR++
Sbjct: 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE----GRVILQG 226
Query: 227 IVESL---VEALEDA 238
+ + E +
Sbjct: 227 NPKEVFAEKEVIRKV 241
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-27
Identities = 53/254 (20%), Positives = 97/254 (38%), Gaps = 51/254 (20%)
Query: 14 IEVKHSVAVTSAYKK--IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
IEV + V+ + + L+ ++L + E + + G +G GK+TLL + G
Sbjct: 3 IEVVN---VSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI------------ 119
+G + ++ IR G F +DQ
Sbjct: 60 TSGDVL--------YDGERKKGY-----EIRRNI---GIAFQYPEDQFFAERVFDEVAFA 103
Query: 120 ----------ETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
K+ ++ + L ++ LSGG++RR++ A ++H P +LILD
Sbjct: 104 VKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD 163
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE-AKGAHNIGLMRDDQYIGRLVHH 225
EP VGLD + +++ GKT+I+ +H IE + ++ G+ V
Sbjct: 164 EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEK----GKKVFD 219
Query: 226 DIVESLVEALEDAL 239
+E +
Sbjct: 220 GTRMEFLEKYDPRF 233
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-27
Identities = 46/213 (21%), Positives = 89/213 (41%), Gaps = 28/213 (13%)
Query: 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD--- 85
+ L L+ V +I L+GP+G GK+TLL + G + G+I+ + + +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSA 68
Query: 86 ------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIV 139
Y+ Q+ + + + D T ++ L L + +
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH--DKTRTELLNDVAGALALDDK--LGRST 124
Query: 140 GALSGGQQRRISFAVSLL-------HNPKLLILDEPTVGLDPILSQI-IWDRLKEMALNG 191
LSGG+ +R+ A +L +LL+LDEP LD + Q + L ++ G
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD-VAQQSALDKILSALSQQG 183
Query: 192 KTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLV 223
I++++H + + AH L++ G+++
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLLKG----GKML 212
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-26
Identities = 54/203 (26%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE++ ++ +K N + L+L V + + +LGP+G GKT L I G + D
Sbjct: 1 MIEIES---LS---RKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 73 AGTIKLSFRQIS-------DIGYMPQELAL--HGELSIRETFRYYGYMFDMTDDQIETRS 123
+G I L + ++ DI ++ Q +L H +++++ + M + R
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPH--MNVKKNL---EFGMRMKKIKDPKRV 108
Query: 124 KEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWD 182
+ + L++ + LSGG+Q+R++ A +L+ NPK+L+LDEP LDP + +
Sbjct: 109 LDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENARE 168
Query: 183 RLKEMALN-GKTIIITTHYIEEA 204
L + T++ TH EA
Sbjct: 169 MLSVLHKKNKLTVLHITHDQTEA 191
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-26
Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 14/187 (7%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K++GN + ++ + LLGP+G GK+ L I G D G ++L+ I+
Sbjct: 9 KRLGNFRL--NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 85 -----DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKI 138
IG++PQ+ AL LS+ YG + ++ + + R +E+ + L + +
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIA-YG-LRNVERVERDRRVREMAEKLGIAHLLDRK 123
Query: 139 VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIIT 197
LSGG+++R++ A +L+ P+LL+LDEP +D ++ + L+ + I+
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 198 THYIEEA 204
TH + EA
Sbjct: 184 THDLIEA 190
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-25
Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 22/204 (10%)
Query: 1 MRKISIKRIDPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTT 60
+ I + + + + G ++L L + + YG+ GP+GCGK+T
Sbjct: 417 VDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKST 476
Query: 61 LLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL-ALHGELSIRETFRYYGYMFDMTDDQI 119
L+ I T + Y+ ++ H + S+ + +
Sbjct: 477 LMRAIANGQVDGFPTQE-----ECRTVYVEHDIDGTHSDTSVLDFVF-------ESGVGT 524
Query: 120 ETRSKEILKLLELPPA--KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ K+ L + ALSGG + +++ A ++L N +L+LDEPT LD
Sbjct: 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD--TV 582
Query: 178 QIIW--DRLKEMALNGKTIIITTH 199
+ W + L G T I +H
Sbjct: 583 NVAWLVNYLNTC---GITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-11
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 2/160 (1%)
Query: 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQE 92
+ +N + ++GP+G GK+TL+N + G +G + I Y+ Q
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQH 744
Query: 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISF 152
H E + +T Y T + ET + ++ E G RRI+
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
S + + + I + N
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAW 844
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 62.4 bits (151), Expect = 4e-11
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 85 DIGYMPQ-ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP---AKKIVG 140
D ++P+ EL + E +E +L L P + +
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIR 900
Query: 141 ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN--GKTIIITT 198
LSGGQ+ ++ A P L++LDEPT LD + L AL +II T
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD--RDSLGA--L-SKALKEFEGGVIIIT 955
Query: 199 H 199
H
Sbjct: 956 H 956
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 6e-24
Identities = 69/214 (32%), Positives = 100/214 (46%), Gaps = 33/214 (15%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----- 85
+LKGLNL V + L+G SGCGK+T + + G + + + I
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRY 461
Query: 86 ----IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE------ILKLLELPPA 135
IG + QE L +I E RY G D+T D+IE KE I+KL P
Sbjct: 462 LREIIGVVSQEPVLFAT-TIAENIRY-GRE-DVTMDEIEKAVKEANAYDFIMKL----PH 514
Query: 136 KK--IVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+ +VG LSGGQ++RI+ A +L+ NPK+L+LDE T LD ++ L + A
Sbjct: 515 QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AR 573
Query: 190 NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
G+T I+ H + + A I G +V
Sbjct: 574 EGRTTIVIAHRLSTVRNADVIAGFDG----GVIV 603
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 9e-22
Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 34/231 (14%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
++ V Y + VL+GL+L V + + L+G SGCGK+T++ + A
Sbjct: 1031 VQFSG---VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G++ L ++I +G + QE L + SI E Y ++ ++I +K
Sbjct: 1088 GSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 125 E------ILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
E I L P K VG LSGGQ++RI+ A +L+ P +L+LDE T L
Sbjct: 1147 EANIHQFIDSL----PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
D +++ + L + A G+T I+ H + + A I ++++ G++
Sbjct: 1203 DTESEKVVQEAL-DKAREGRTCIVIAHRLSTIQNADLIVVIQN----GKVK 1248
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 7e-24
Identities = 48/191 (25%), Positives = 93/191 (48%), Gaps = 28/191 (14%)
Query: 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94
L G++++V + + ++GP+G GK+TL+N I G D G + + I+ P EL
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDIT--NKEPAELY 80
Query: 95 LHG------------ELSIRE------TFRYYGYMFDM-------TDDQIETRSKEILKL 129
+G E+++ E + + ++++ ++ +IL+
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 130 LELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
L+L + G LSGGQ + + +L+ NPK++++DEP G+ P L+ I++ + E+
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 189 LNGKTIIITTH 199
G T +I H
Sbjct: 201 AKGITFLIIEH 211
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 1e-23
Identities = 54/207 (26%), Positives = 92/207 (44%), Gaps = 36/207 (17%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI------- 65
++ +H V AY + +L+ ++ N I GPSG GK+T+ + +
Sbjct: 1 MLSARH---VDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 66 VGRNTLDAGTIK----LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
G T+D I ++R IG++ Q+ A+ +IRE Y G D TD+ +
Sbjct: 56 AGEITIDGQPIDNISLENWRS--QIGFVSQDSAIMAG-TIRENLTY-GLEGDYTDEDLWQ 111
Query: 122 RSKE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPT 169
+ + P + VG +SGGQ++R++ A + L NPK+L+LDE T
Sbjct: 112 VLDLAFARSFVENM----PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEAT 167
Query: 170 VGLDPILSQIIWDRLKEMALNGKTIII 196
LD ++ L + T++I
Sbjct: 168 ASLDSESESMVQKALDSLMKGRTTLVI 194
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 3e-23
Identities = 64/235 (27%), Positives = 109/235 (46%), Gaps = 42/235 (17%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
EI+ ++ K I + +LKG++L+V + + ++G SG GK+TLL I+G L
Sbjct: 3 EILRAEN------IKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLY-ILG--LL 53
Query: 72 D---AGTIKLSFRQISD-------------IGYMPQELALHGELSIRET----FRYYGYM 111
D G + L +++ +G++ Q L EL+ E G
Sbjct: 54 DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG-- 111
Query: 112 FDMTDDQIETRSKEILKLLELPPAKKIV---GALSGGQQRRISFAVSLLHNPKLLILDEP 168
+ + R + +L L L K+ LSGG+Q+R++ A +L + P LL DEP
Sbjct: 112 --KPKKEAKERGEYLLSELGL--GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEP 167
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
T LD ++ + D ++ G +I++ TH E A+ H M+D G++V
Sbjct: 168 TGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKD----GKVV 218
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 93.7 bits (234), Expect = 6e-23
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 41/233 (17%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------V 66
I ++ + YK + V+L +NL++ + ++ G++G SG GK+TL I
Sbjct: 8 ITFRN---IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63
Query: 67 GRNTLDAGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G+ +D + L R+ +G + Q+ L SI + M+ +++
Sbjct: 64 GQVLIDGHDLALADPNWLRR--QVGVVLQDNVLLNR-SIIDNISLA--NPGMSVEKVIYA 118
Query: 123 SKE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTV 170
+K I +L IVG LSGGQ++RI+ A +L++NPK+LI DE T
Sbjct: 119 AKLAGAHDFISEL----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATS 174
Query: 171 GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
LD +I + ++ G+T+II H + K A I +M G++V
Sbjct: 175 ALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEK----GKIV 222
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 1e-22
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 31/207 (14%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++I+V K G+ VLKG+N+++ E ++ ++GPSG GK+T L C+
Sbjct: 23 QMIDVHQ------LKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF 76
Query: 72 DAGTIKLSFRQISD-----------IGYMPQELALHGELSIRE-------TFRYYGYMFD 113
D G I + + +G + Q L +++ R
Sbjct: 77 DEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR------K 130
Query: 114 MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172
++ E ++ E+L + L A +LSGGQ +R++ A +L PK+++ DEPT L
Sbjct: 131 WPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL 190
Query: 173 DPILSQIIWDRLKEMALNGKTIIITTH 199
DP + + +K++A G T+++ TH
Sbjct: 191 DPEMVGEVLSVMKQLANEGMTMVVVTH 217
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-22
Identities = 68/228 (29%), Positives = 117/228 (51%), Gaps = 33/228 (14%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
++++K+ VT YK + LK +NLN+ E + ++GPSG GK+T+LN I+G L
Sbjct: 1 MVKLKN---VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIG--CL 54
Query: 72 D---AGTIKLSFRQISD-------------IGYMPQELALHGELSIRETFR---YYGYMF 112
D G + + + +D IG++ Q+ L L+ E + Y
Sbjct: 55 DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRG 114
Query: 113 DMTDDQIETRSKEILKLLELPPAKKIV----GALSGGQQRRISFAVSLLHNPKLLILDEP 168
M+ ++ R+ E LK+ EL ++ LSGGQQ+R++ A +L +NP +++ D+P
Sbjct: 115 AMSGEERRKRALECLKMAEL--EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQP 172
Query: 169 TVGLDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKGAHNIGLMRD 215
T LD + I LK++ +GKT+++ TH I A+ I ++D
Sbjct: 173 TWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-22
Identities = 64/238 (26%), Positives = 104/238 (43%), Gaps = 46/238 (19%)
Query: 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------VGRNTLDAGTIK-LSFRQ 82
N VL+GL + K+ L+GP+G GK+T+ + G+ LD +
Sbjct: 31 NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 83 I-SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE------ILKLLELPPA 135
+ + + + QE L G S RE Y G T ++I + E I P
Sbjct: 91 LHTQVAAVGQEPLLFGR-SFRENIAY-GLTRTPTMEEITAVAMESGAHDFISGF----PQ 144
Query: 136 K--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP---ILSQIIWDRLKE 186
VG LSGGQ++ ++ A +L+ P+LLILD T LD + Q + E
Sbjct: 145 GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204
Query: 187 MALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV----HHDIVE------SLVEA 234
A +T+++ T + A+ AH+I +++ G + H ++E S+VEA
Sbjct: 205 WA--SRTVLLITQQLSLAERAHHILFLKE----GSVCEQGTHLQLMERGGCYRSMVEA 256
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 2e-22
Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 41/213 (19%)
Query: 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL---DAGTI 76
+ V +K+ G H VLKG++L + ++G SG GK+T L CI N L G I
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCI---NFLEKPSEGAI 63
Query: 77 KLSFRQISDIGYMPQELALHGELSIRETFRYYGYMF-----------------------D 113
++ + I+ + +L + + +R +F
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 114 MTDDQIETRSKEILKLLELP-------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
++ R+ + L + + P LSGGQQ+R+S A +L P +L+ D
Sbjct: 124 LSKHDARERALKYLAKVGIDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFD 178
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
EPT LDP L + ++++A GKT+++ TH
Sbjct: 179 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 4e-22
Identities = 62/205 (30%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV------G 67
IE V +Y K NH LK +N +P L+G +G GK+T+ + G
Sbjct: 18 IEFSD---VNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEG 74
Query: 68 RNTLDAGTIK----LSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
+ + S R I IG +PQ+ L E +I+ Y G D TD+++ +
Sbjct: 75 DIKIGGKNVNKYNRNSIRSI--IGIVPQDTILFNE-TIKYNILY-G-KLDATDEEVIKAT 129
Query: 124 KE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
K I L P K IVG LSGG+++RI+ A LL +PK++I DE T
Sbjct: 130 KSAQLYDFIEAL----PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 172 LDPILSQIIWDRLKEMALNGKTIII 196
LD + ++++ N III
Sbjct: 186 LDSKTEYLFQKAVEDLRKNRTLIII 210
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 4e-21
Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 27/240 (11%)
Query: 10 DPEIIEVKHSVAVTSAYK-KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68
D +I++ + +T + L ++L+VP +IYG++G SG GK+TL+ C+
Sbjct: 21 DKHMIKLSN---ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 69 NTLDAGTI--------KLSFRQI----SDIGYMPQELALHGELSIRETFRYYGYMFDMTD 116
G++ LS ++ IG + Q L ++ + +
Sbjct: 78 ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPK 137
Query: 117 DQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175
D+++ R E+L L+ L LSGGQ++R++ A +L NPK+L+ D+ T LDP
Sbjct: 138 DEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPA 197
Query: 176 LSQIIWDRLKEMALN---GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231
++ I + LK+ +N G TI++ TH ++ K + ++ + G L+ D V +
Sbjct: 198 TTRSILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISN----GELIEQDTVSEV 251
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 87.9 bits (219), Expect = 8e-21
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 26/192 (13%)
Query: 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81
+ Y G +KG++L VP +I L+G +G GKTT L+ I G G I + +
Sbjct: 12 LHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 82 QISDIGYMPQELALHG------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
I+ + G EL++ E Y + +++ +
Sbjct: 69 DIT--NKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG----IKRDLEWI 122
Query: 130 LELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
L P K++ G LSGG+Q+ ++ +L+ PKLL++DEP++GL PIL +++ +
Sbjct: 123 FSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 185 KEMALNGKTIII 196
+++ G TI++
Sbjct: 183 QKINQEGTTILL 194
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 1e-19
Identities = 59/211 (27%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I VK+ V+ +KK G V L +N+N+ + +G+LGPSG GKTT + I G +
Sbjct: 4 IIVKN---VSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 74 GTIKLSFRQISDIGYMP------------QELALHGELSIRETFRYYGYMFDMTDDQIET 121
G + R ++ G + Q AL+ L+ E + M+ ++I
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL---- 176
R +E+ K+L++ LSG QQ+R++ A +L+ +P LL+LDEP LD +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 177 -SQI--IWDRLKEMALNGKTIIITTHYIEEA 204
+ + + RL G T+++ +H +
Sbjct: 180 RALVKEVQSRL------GVTLLVVSHDPADI 204
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-18
Identities = 60/208 (28%), Positives = 96/208 (46%), Gaps = 40/208 (19%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------V 66
I++ H V+ Y +LK +NL++ + + +G SG GK+TL+N I
Sbjct: 340 IDIDH---VSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 67 GRNTLDAGT----IKL-SFRQISDIGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIE 120
G+ +D G S R + IG + Q+ L +++E G TD+++
Sbjct: 396 GQILID-GHNIKDFLTGSLR--NQIGLVQQDNILFSD--TVKENILL-G-RPTATDEEVV 448
Query: 121 TRSKE------ILKLLELPPAK--KIVG----ALSGGQQRRISFAVSLLHNPKLLILDEP 168
+K I+ L P VG LSGGQ++R+S A L+NP +LILDE
Sbjct: 449 EAAKMANAHDFIMNL----PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEA 504
Query: 169 TVGLDPILSQIIWDRLKEMALNGKTIII 196
T LD II + L ++ + T+I+
Sbjct: 505 TSALDLESESIIQEALDVLSKDRTTLIV 532
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-17
Identities = 55/215 (25%), Positives = 99/215 (46%), Gaps = 25/215 (11%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI-------VGRNTLDAGTIK----LSFRQ 82
L+ ++ V + L+GPSG GK+T+L + G +D I S R
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 83 ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET--RSKEIL-KLLELPPA-KKI 138
IG +PQ+ L + +I + RY G +D++E ++ I ++ P +
Sbjct: 129 H--IGVVPQDTVLFND-TIADNIRY-G-RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 139 VG----ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194
VG LSGG+++R++ A ++L P +++LDE T LD + I L ++ +T
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTT 242
Query: 195 IITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229
I+ H + A I +++D + R H ++
Sbjct: 243 IVVAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 4e-17
Identities = 48/168 (28%), Positives = 86/168 (51%), Gaps = 18/168 (10%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+ + + KK GN L +NL + + + LLGPSG GK+TLL I G +G I
Sbjct: 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62
Query: 79 SFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
+ ++ ++G + Q AL+ +++ + + + ++I+ + +E+ K+L
Sbjct: 63 DEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLH 122
Query: 132 LP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ P LSGGQQ+R++ A +L+ P++L+LDEP LD
Sbjct: 123 IDKLLNRYPW-----QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 5e-17
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
++VK VT Y+ L ++ ++P+ K L+G SG GK+T+ N +D+
Sbjct: 342 VDVKD---VTFTYQG-KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDS 397
Query: 74 GTIKLSFRQISD---------IGYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRS 123
G+I L + D + Q + L + +I Y + T +QIE +
Sbjct: 398 GSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND--TIANNIA-YAAEGEYTREQIEQAA 454
Query: 124 KE------ILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVG 171
++ I + P ++G LSGGQ++R++ A +LL + +LILDE T
Sbjct: 455 RQAHAMEFIENM----PQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 172 LD 173
LD
Sbjct: 511 LD 512
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 3e-16
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+E ++ VT Y L+ +NL +P K L+G SG GK+T+ + I +D
Sbjct: 342 LEFRN---VTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 74 GTIKL-----------SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G I + S R + + + Q + L + ++ Y + + +QIE
Sbjct: 398 GHILMDGHDLREYTLASLR--NQVALVSQNVHLFND-TVANNIA-YARTEEYSREQIEEA 453
Query: 123 SKE------ILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTV 170
++ I K+ I+G LSGGQ++RI+ A +LL + +LILDE T
Sbjct: 454 ARMAYAMDFINKM----DNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 171 GLD 173
LD
Sbjct: 510 ALD 512
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 9e-16
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 32/218 (14%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQFS 78
Query: 94 ALHGELSIRE--TFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--KKIVG--- 140
+ +I+E F G +D E R + ++K + ++G
Sbjct: 79 WIMPG-TIKENIIF---GVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 141 -ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 200 YIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
+E K A I ++ + G + L D
Sbjct: 189 KMEHLKKADKILILHE----GSSYFYGTFSELQNLQPD 222
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 22/170 (12%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + + K+ GN + LNL + + + LLGPSGCGKTT L I G G I
Sbjct: 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70
Query: 79 SFRQISDIGYMP---------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL 129
R ++ + P Q A+ +++ E + + D+I+ R + +L
Sbjct: 71 GDRDVTYLP--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 128
Query: 130 LELP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
L++ PA LSGGQ++R++ A +++ P +L++DEP LD
Sbjct: 129 LQIEELLNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 20/169 (11%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
S+ V + K G + G++ V + + LLGPSGCGKTT L + G +G I
Sbjct: 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62
Query: 79 SFRQIS-------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE 131
++ ++G + Q AL+ +++ E + ++ D++E R EI + L
Sbjct: 63 DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLL 122
Query: 132 L-------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ P LSGGQQ+R++ A +L+ PK+L+ DEP LD
Sbjct: 123 IDNLLDRKP------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 5e-15
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + +K G ++ ++L V + + LLGPSGCGKTT L I G G I +
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 79 SFRQISDIGYMP-------------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+ ++D Q AL+ +++ + + + + +I+ R +E
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 126 ILKLLEL-------PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
+ +LL L P LSGGQ++R++ +++ P++ ++DEP LD
Sbjct: 123 VAELLGLTELLNRKP------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD 171
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 9e-15
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 29/216 (13%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
VLK +N + ++ + G +G GKT+LL I+G G IK S R I + Q
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR----ISFCSQNS 108
Query: 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--KKIVG----A 141
+ +I+E G +D E R + ++K + ++G
Sbjct: 109 WIMPG-TIKENI--IGVSYD------EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT 159
Query: 142 LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYI 201
LSGGQ+ RIS A ++ + L +LD P LD + + I++ + KT I+ T +
Sbjct: 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 219
Query: 202 EEAKGAHNIGLMRDDQYIGRLVHHDIVESLVEALED 237
E K A I ++ + G + L D
Sbjct: 220 EHLKKADKILILHE----GSSYFYGTFSELQNLRPD 251
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-14
Identities = 48/216 (22%), Positives = 97/216 (44%), Gaps = 34/216 (15%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQEL 93
L G+ ++PE + ++G GCGK++LL+ ++ G + + + Y+PQ+
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK----GSVAYVPQQA 75
Query: 94 ALHGELSIRE--TFRYYGYMFDMTDDQIETRSKEILKL------LELPPA--KKIVG--- 140
+ + S+RE F G + E + +++ LE+ P+ + +G
Sbjct: 76 WIQND-SLRENILF---GCQLE------EPYYRSVIQACALLPDLEILPSGDRTEIGEKG 125
Query: 141 -ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDR--LKEMALNGKTIIIT 197
LSGGQ++R+S A ++ N + + D+P +D + + I++ + L KT I+
Sbjct: 126 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV 185
Query: 198 THYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
TH + I +M G++ + L+
Sbjct: 186 THSMSYLPQVDVIIVMSG----GKISEMGSYQELLA 217
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 4e-13
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 31/190 (16%)
Query: 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGY----- 88
+L+ ++ ++ + GLLG +G GK+TLL+ + R G I++ I
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRK 94
Query: 89 ----MPQELAL-HGELSIRET---FRYYGYMFDMTDDQI-----ETRSKEILKLLELPPA 135
+PQ++ + G + R+ + +D +I E + +++
Sbjct: 95 AFGVIPQKVFIFSG--TFRKNLDPNAAH------SDQEIWKVADEVGLRSVIEQFPGKLD 146
Query: 136 KKIV---GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGK 192
+V LS G ++ + A S+L K+L+LDEP+ LDP+ QII LK+ A
Sbjct: 147 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ-AFADC 205
Query: 193 TIIITTHYIE 202
T+I+ IE
Sbjct: 206 TVILCEARIE 215
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 1e-10
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 53/187 (28%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
IE K+ V +Y K VLK + ++ + L+GP+G GKTT++N ++ +D
Sbjct: 355 IEFKN---VWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409
Query: 74 GTIKLSFRQISDI---------GYMPQELAL-HGELSIRETFRYYGYMFDMTDDQIETRS 123
G I + I I G + Q+ L +++E +Y G TD++I+
Sbjct: 410 GQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST--TVKENLKY-GNP-GATDEEIKE-- 463
Query: 124 KEILKLLELPPAKKIVGA---------------------LSGGQQRRISFAVSLLHNPKL 162
A K+ + LS GQ++ ++ + L NPK+
Sbjct: 464 -----------AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
Query: 163 LILDEPT 169
LILDE T
Sbjct: 513 LILDEAT 519
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 7e-10
Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 62/274 (22%)
Query: 3 KISIKRI------DPEIIEVKHSVAVTSAYKKIG-NHV----------VLKGLNLNVPEN 45
S KR+ P I E +++A+ + + +V VL G+N +V
Sbjct: 310 SASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPG 369
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD---------IGYMPQELAL- 95
+ +LG +G GK+TL+N I + G +++ + I +PQE L
Sbjct: 370 SLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF 429
Query: 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGA-------------- 141
G +I+E ++ G D TDD EI++ ++ + +
Sbjct: 430 SG--TIKENLKW-GRE-DATDD-------EIVEAAKIAQIHDFIISLPEGYDSRVERGGR 478
Query: 142 -LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200
SGGQ++R+S A +L+ PK+LILD+ T +DPI + I D LK G T I T
Sbjct: 479 NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQK 537
Query: 201 IEEAKGAHNIGLMRDDQYIGRLV----HHDIVES 230
I A A I ++ + G++ H +++E
Sbjct: 538 IPTALLADKILVL-HE---GKVAGFGTHKELLEH 567
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 9e-10
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 24/166 (14%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
SV + + K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +G + +
Sbjct: 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 79 SFRQISDIGYMP---------QELALHGELSIRETFRYYGYMFDMTDDQIETRSKE---I 126
++++D P Q AL+ LS+ E + + + I R + +
Sbjct: 63 GEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 120
Query: 127 LKLLEL----PPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168
L+L L P ALSGGQ++R++ +L+ P + +LDEP
Sbjct: 121 LQLAHLLDRKP------KALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 5e-09
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 142 LSGGQQRRISFAVSL------LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
LSGG++ + A L LLILDEPT LD + + ++ +I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 196 ITTHYIEEAKGAHNI 210
+ +H E A ++
Sbjct: 309 LVSHDEELKDAADHV 323
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-08
Identities = 58/337 (17%), Positives = 116/337 (34%), Gaps = 99/337 (29%)
Query: 10 DPEIIE---VKHSVAVTSAYKKIGN--------HVVLKGLNLNVPENKIYGLLGPSGCGK 58
+ + + + +T+ +K++ + H+ L ++ + +++ LL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------ 308
Query: 59 TTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRE---TFRYYGYMFDMT 115
L+C L R++ P+ L++ E IR+ T+ + ++
Sbjct: 309 -KYLDCRPQ---------DLP-REVLTT--NPRRLSIIAES-IRDGLATWDNWKHV---N 351
Query: 116 DDQIETRSKEILKLLE-------------LPPAKKI-VGALS----GGQQRRISFAVSLL 157
D++ T + L +LE PP+ I LS + + V+ L
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411
Query: 158 HNPKLLILD--EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY-IEEAKGAHNIGLMR 214
H L+ E T+ + I ++ E AL+ ++I+ HY I + + ++
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIV--DHYNIPKTFDSDDLIPPY 468
Query: 215 DDQYI-GRLVHHDIVESLVEA------------------LEDALRHGNVINKVDLVDGRG 255
DQY + HH L LE +RH + + G
Sbjct: 469 LDQYFYSHIGHH-----LKNIEHPERMTLFRMVFLDFRFLEQKIRHDST-----AWNASG 518
Query: 256 SIDEVLSRQCTVSVDVD--RPAINEGDYVWTQLEKGY 290
SI L + +P I + D + +L
Sbjct: 519 SILNTLQ-------QLKFYKPYICDNDPKYERLVNAI 548
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 3e-08
Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 68/276 (24%)
Query: 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69
D ++ K++V+ Y K+ L L P + + G G GKT + +
Sbjct: 122 DNQVF-AKYNVSRLQPYLKLRQA--LLELR---PAKNV-LIDGVLGSGKTWVAL-----D 169
Query: 70 TLDAGTIKLSF----------RQISDIGYMPQELALHGELSIRETFRY-YGYMFDMTDDQ 118
+ ++ S + L ++ T R + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 119 IETRSKEILKLLELPPA---------KKIVGALSGG-------QQRRISFAVSLLHNPKL 162
I+ + +LK K A + + ++++ +S
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTH 288
Query: 163 LILDEPTVGLDP-----ILSQIIW---DRLKEMALNGKTIIITTHYIEEAKGAHNIG-LM 213
+ LD ++ L P +L + + L L ++ I +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-----------IAESI 337
Query: 214 RDD-------QYIGRLVHHDIVESLVEALEDA-LRH 241
RD +++ I+ES + LE A R
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 8e-08
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 30/199 (15%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISD 85
+ + +L+GL+L+V +++ ++GP+G GK+TL + GR + GT++ + +
Sbjct: 29 SVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLA 88
Query: 86 IGYMPQELALHG---------ELS-------IRETF---RYYGYMFDMTDDQIETRSKEI 126
+ P++ A G E+ ++ R Y + + +E
Sbjct: 89 LS--PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 127 LKLLELPP--AKKIVGA-LSGGQQRR--ISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+ LL++P + V SGG+++R I +++L P+L ILDE GLD +++
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDI-LQMAVL-EPELCILDESDSGLDIDALKVVA 204
Query: 182 DRLKEMALNGKTIIITTHY 200
D + + ++ II THY
Sbjct: 205 DGVNSLRDGKRSFIIVTHY 223
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 9e-08
Identities = 49/203 (24%), Positives = 86/203 (42%), Gaps = 42/203 (20%)
Query: 28 KIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDAGTIKLSFRQISD 85
I +LKG+NL VP+ +++ L+GP+G GK+TL + G T++ G I L I +
Sbjct: 12 SIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILE 71
Query: 86 IGYMPQELALHG---------EL--------------SIRETFRYYGYMFDMTDDQIETR 122
+ P E A G E+ + ++ + T+
Sbjct: 72 LS--PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR--------EVGVAEFWTK 121
Query: 123 SKEILKLLELPP--AKKIVGA-LSGGQQRR--ISFAVSLLHNPKLLILDEPTVGLDPILS 177
K+ L+LL+ + + SGG+++R I + +L P +LDE GLD
Sbjct: 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEI-LQLLVL-EPTYAVLDETDSGLDIDAL 179
Query: 178 QIIWDRLKEMALNGKTIIITTHY 200
+++ + M ++ THY
Sbjct: 180 KVVARGVNAMRGPNFGALVITHY 202
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-07
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 142 LSGGQQRRISFAVSL------LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
LSGG++ + A L LLILDEPT LD + + ++ +I
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 196 ITTHYIEEAKGAHNI 210
+ +H E A ++
Sbjct: 118 LVSHDEELKDAADHV 132
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 4e-05
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 114 MTDDQIETRSKEILKLLELPPAKKI-VGALSGGQQRRISFAVSL-------LHNPKLLIL 165
+ ++ P + + LSGG+Q ++ ++ L + + +IL
Sbjct: 252 FDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIIL 311
Query: 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197
DEPTV LD + + +++ + IIIT
Sbjct: 312 DEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 100.0 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.97 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.97 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.97 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.96 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.95 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.95 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.95 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.94 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.94 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.94 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.94 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.93 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.93 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.92 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.92 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.92 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.92 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.92 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.91 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.91 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.91 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.9 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.9 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.89 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.89 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.89 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.89 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.89 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.89 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.88 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.87 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.87 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.87 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.86 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.85 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.84 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.84 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.83 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.82 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.82 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.82 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.81 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.81 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.8 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.78 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.77 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.77 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.76 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.74 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.73 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.73 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.71 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.7 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.7 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.69 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.68 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.68 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.68 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.67 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.64 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.64 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.64 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.63 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.62 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.62 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.61 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.59 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.59 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.58 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.57 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.55 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.55 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.53 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.51 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.49 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.48 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.48 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.45 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.43 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.42 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.41 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.39 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.33 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.33 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.32 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.32 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.3 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.26 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.25 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.24 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.23 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.21 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.21 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.06 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.01 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.97 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.95 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.9 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.86 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.86 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.86 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.84 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.81 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.81 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.79 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.79 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.78 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.75 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.75 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.7 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.68 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.66 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.65 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.63 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.62 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.53 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.52 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.5 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.48 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.46 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.41 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.36 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.35 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.34 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.34 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.34 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.34 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.34 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.32 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.31 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.29 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.26 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.25 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.25 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 98.22 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.19 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.13 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.12 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.12 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.06 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.05 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 98.03 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.01 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.99 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.98 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.97 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.97 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.89 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.89 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.87 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 97.85 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.84 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.82 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.81 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.79 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.77 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.77 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.77 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.76 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.72 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.7 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.67 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.63 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.62 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.62 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.61 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.6 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.6 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.57 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.57 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.56 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 97.53 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.51 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.48 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.41 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.38 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.38 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.38 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.37 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.36 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.35 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.32 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.32 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.31 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.24 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 97.23 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.21 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.19 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 97.19 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.17 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.15 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 97.14 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.11 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 97.11 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.08 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 97.06 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.05 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 97.05 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 97.02 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.02 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 97.0 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.99 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.99 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.97 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.97 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.95 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.94 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.91 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.9 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.9 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.89 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.89 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.86 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.86 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.86 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.86 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.85 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.84 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.81 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.8 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.79 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.79 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.78 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.77 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.77 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.72 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.65 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.65 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.63 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.63 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.62 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.61 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.6 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.6 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.6 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.55 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.54 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.53 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.52 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.51 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.51 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.5 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.49 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.48 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.47 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.46 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.46 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 96.45 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.44 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 96.44 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.44 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.43 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.43 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.43 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.42 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.41 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.41 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.39 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.39 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.39 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.39 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.38 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.37 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.37 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.37 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.36 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.36 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.35 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.35 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.35 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.35 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.35 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.34 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.32 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.31 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.3 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.3 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.27 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.27 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.27 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.26 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.26 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.25 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.24 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.24 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.23 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.22 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.19 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.19 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.17 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.16 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.16 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.15 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.15 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.15 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.14 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.14 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.13 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.13 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.13 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.1 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.1 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.1 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.09 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.09 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.08 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.07 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.06 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.06 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.05 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.05 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.05 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.03 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.02 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.02 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.02 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.01 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.0 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.0 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.0 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.99 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.98 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.98 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.96 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.95 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.95 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.94 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.93 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.92 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.91 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.9 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.9 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.9 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.9 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.89 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.89 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.89 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.89 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.89 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.88 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.87 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.87 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.87 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.86 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.86 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.86 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 95.85 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.84 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.84 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.83 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.83 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.82 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.82 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.82 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.82 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.82 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.81 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.81 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.8 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.8 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.8 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.79 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.79 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 95.74 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.73 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.72 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.71 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.69 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 95.68 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.67 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.66 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.66 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.66 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 95.65 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 95.64 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.64 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.63 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.6 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 95.59 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.58 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.57 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.56 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 95.55 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 95.55 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.52 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.52 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 95.49 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.48 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 95.47 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.45 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.44 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.43 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 95.38 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 95.36 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 95.33 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.32 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 95.31 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.29 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.25 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.23 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.2 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.1 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.09 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.07 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.07 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 94.85 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.81 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.74 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.74 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.71 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 94.65 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 94.63 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 94.63 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.63 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.58 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 94.55 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 94.53 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 94.5 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.49 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 94.44 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 94.43 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 94.43 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 94.4 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.32 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 94.32 |
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-61 Score=450.81 Aligned_cols=213 Identities=31% Similarity=0.458 Sum_probs=198.9
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------CeE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~~i 86 (291)
.+|+++|++|+|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ ++|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 478999999999999999999999999999999999999999999999999999999999999876 459
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|||||++.+|+.+||+||+.|+....+.+..+.++++.++++.++|.. .++++.+|||||||||+|||||+.+|++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999999999776666666777788999999999976 7999999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+|||+..+..+++.|.++. +.|+|+|+||||++++.. ||||++|++|+++..|+++++...
T Consensus 163 DEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 163 DEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999888875 569999999999999976 999999999999999999988654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-60 Score=429.70 Aligned_cols=220 Identities=26% Similarity=0.435 Sum_probs=195.5
Q ss_pred CcccccccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-----
Q psy6612 10 DPEIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----- 84 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----- 84 (291)
.|..-.++.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 15 ~~~~~~m~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 15 VPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp -------CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCC
T ss_pred ccCCCCchheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCcccc
Confidence 354445566899999999999999999999999999999999999999999999999999999999999998762
Q ss_pred ------eEEEEcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 ------DIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ------~ig~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.+||+||++.+++.+||+||+.++. ...+.+..+.++++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 95 ~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp HHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 4999999999999999999998853 3344455555678889999999976 6899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999998779999999999999976 99999999999999999887654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-60 Score=421.27 Aligned_cols=207 Identities=27% Similarity=0.355 Sum_probs=190.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------- 83 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------- 83 (291)
+.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 2 ~~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred CcEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
+.+||+||++.+++.+||+||+.++...++.+..+.++++.++++.+++.. .++++++|||||||||+|||||+++|++
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l 161 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL 161 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 249999999999999999999988655445554555677889999999976 6899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEec
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~ 223 (291)
|||||||+|||+.++..++++|++++++|+|||++|||++++..||++++|++|+++.+|+
T Consensus 162 llLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999867999999999999985599999999999998876
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=449.27 Aligned_cols=214 Identities=26% Similarity=0.442 Sum_probs=198.4
Q ss_pred ccceEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------
Q psy6612 16 VKHSVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------- 83 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------- 83 (291)
.+.||+++|++|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4568999999999963 5799999999999999999999999999999999999999999999999986
Q ss_pred ----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 84 ----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 84 ----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
++|||+||++.+++.+||+||+.++...++.+.++.++++.++++.+|+.. .++++++|||||||||+|||||++
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 359999999999999999999999877777777778889999999999976 789999999999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|++|||||||+|||+.++..++++|+++++ .|+|||+||||++++.. |||+++|++|+++++|+++++..
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999974 59999999999999976 99999999999999999988754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-60 Score=450.04 Aligned_cols=212 Identities=28% Similarity=0.437 Sum_probs=200.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++|+|++..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.||||||
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 58899999999999999999999999999999999999999999999999999999999999986 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.++++.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999999999999877777777788889999999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||+..+..+++.|++++++ |.|+|+||||++++.. ||||++|++|+++..|+++++...
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999999754 9999999999999976 999999999999999999988654
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-60 Score=421.63 Aligned_cols=209 Identities=29% Similarity=0.403 Sum_probs=188.0
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------- 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------- 84 (291)
||+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 5789999999963 57999999999999999999999999999999999999999999999998761
Q ss_pred ---eEEEEcCCCCCCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 ---DIGYMPQELALHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ---~ig~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral 156 (291)
.+||+||++.+++.+||+||+.++.... ..+..+..+++.++++.+++.. .++++.+|||||||||+|||||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 4999999999999999999998864332 3445666778889999999975 3899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+++|++|||||||+|||+.++..++++|++++++ |+|||+||||++.+..||++++|++|+++..++.+++
T Consensus 161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999754 9999999999997656999999999999998887664
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-60 Score=431.03 Aligned_cols=214 Identities=29% Similarity=0.386 Sum_probs=195.6
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------C
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-----------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-----------~ 84 (291)
+.+|+++|++++|++ .++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ +
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 347999999999975 5699999999999999999999999999999999999999999999999886 2
Q ss_pred eEEEEcCCCC-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 85 DIGYMPQELA-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 85 ~ig~v~q~~~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
.|||+||++. .+..+||+||+.++...++.+.++.++++.++++.+++.. .++++.+|||||||||+|||||+++|++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l 164 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 164 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5999999973 3446899999998766666677777888999999999976 6899999999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||||+|||+.++..++++|++++ ++|+|||+||||++++.. |||+++|++|+++.+|+++++...
T Consensus 165 LlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 165 LILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred EEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999997 569999999999999976 999999999999999999987654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-59 Score=424.85 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=194.2
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-------------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------------- 84 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------------- 84 (291)
.||+++|++++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 4799999999999999999999999999999999999999999999999999999999999998753
Q ss_pred ---------eEEEEcCCCCCCCCCCHHHHHHHhc-cccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 85 ---------DIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 85 ---------~ig~v~q~~~l~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
.+||+||++.+++.+||+||+.++. ..++.+..+.++++.++++.+++.. .++++++|||||||||+|
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 3999999999999999999998853 3344455555678889999999965 589999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+++|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 999999999999999999999999999999999998779999999999999976 99999999999999999887654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-59 Score=421.89 Aligned_cols=212 Identities=28% Similarity=0.460 Sum_probs=195.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYM 89 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v 89 (291)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 368999999999999999999999999999999999999999999999999999999999999876 359999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP 168 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP 168 (291)
||++.+++.+||+||+.++...++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+++|++||||||
T Consensus 94 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 94 PEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp CTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999999999999998655445555555667889999999976 6899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 169 TVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999998779999999999999976 99999999999999998877654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-59 Score=422.21 Aligned_cols=218 Identities=21% Similarity=0.302 Sum_probs=196.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eEEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DIGY 88 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ig~ 88 (291)
.+|+++|+++.|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 4799999999999999999999999999999999999999999999999999999999999999872 4999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc------CCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH------NPK 161 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~------~p~ 161 (291)
++|++.+++.+||+||+.++...+. ..+.++++.++++.+++.. .++++++|||||||||+|||||++ +|+
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYG--GSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSC--STTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred EecCCccCCCCCHHHHHHhhhhhcC--cHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 9999999888999999998654332 2344567889999999976 689999999999999999999999 999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
+|||||||+|||+.++..++++|++++++ |+|||++|||++++.. |||+++|++|+++.+|+++++... ..+.+.|
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~--~~l~~~~ 245 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA--ETLTQWY 245 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH--HHHHHHC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc--HHHHHHh
Confidence 99999999999999999999999999754 6799999999999976 999999999999999999887653 3455555
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-59 Score=438.84 Aligned_cols=212 Identities=29% Similarity=0.434 Sum_probs=196.3
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++|+|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 58899999999999999999999999999999999999999999999999999999999999886 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+..+.++++.++++.++++. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999999999998765555444555678899999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+..+..+++.|+++++ .|.|+|++|||++++.. ||++++|++|+++..|+++++.+.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 224 (359)
T 2yyz_A 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDS 224 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999975 48999999999999966 999999999999999999988654
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-58 Score=415.01 Aligned_cols=211 Identities=28% Similarity=0.448 Sum_probs=190.9
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 478999999999999999999999999999999999999999999999999999999999999876 2399
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcC-CCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLE-LPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+++.+|++||+.++.. ......+.+++++++++.++ +.. .++++.+|||||||||+|||||+++|++|||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999988532 12233445567888999995 854 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999998778999999999999865 99999999999999998877654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-59 Score=421.66 Aligned_cols=209 Identities=24% Similarity=0.401 Sum_probs=191.0
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIG 87 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig 87 (291)
.||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 368899999999999999999999999999999999999999999999999999999999999876 1499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccc--cC-----------CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 88 YMPQELALHGELSIRETFRYYGYM--FD-----------MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
|+||++.+++.+||+||+.++... .+ ....+.++++.++++.++++. .++++.+|||||||||+||
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 999999999999999999886432 12 233445667889999999976 6899999999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~ 226 (291)
|||+++|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..+++++
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999998779999999999999975 99999999999999998877
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-59 Score=438.93 Aligned_cols=214 Identities=25% Similarity=0.436 Sum_probs=198.9
Q ss_pred cceEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEE
Q psy6612 17 KHSVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGY 88 (291)
Q Consensus 17 ~~~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~ 88 (291)
+.+|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++||
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEE
Confidence 4579999999999 888899999999999999999999999999999999999999999999999886 46999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
|||++.+|+.+||+||+.|+...++.+..+.++++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE 171 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDE 171 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999999999998766556666666788999999999976 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+|||+..+..+++.|++++++ |.|+|+||||++++.. ||++++|++|+++..|+++++.+.
T Consensus 172 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999754 8999999999999976 999999999999999999887653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-59 Score=438.32 Aligned_cols=212 Identities=28% Similarity=0.465 Sum_probs=197.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 58899999999988999999999999999999999999999999999999999999999999886 46999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+..+.+++++++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999998766556666666788999999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+..+..+++.|+++++ .|.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999975 48999999999999966 999999999999999999888654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=438.69 Aligned_cols=212 Identities=27% Similarity=0.426 Sum_probs=190.8
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
+|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 59999999999999999999999999999999999999999999999999999999999999886 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+.++.++++.++++.+++.. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 9999999999999998766556666666778999999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||+..+..+++.|++++++ |.|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999754 8999999999999966 999999999999999999888654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=437.30 Aligned_cols=212 Identities=26% Similarity=0.427 Sum_probs=197.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------Ce
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ 85 (291)
+|+++|++++|+++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ ++
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 58999999999999999999999999999999999999999999999999999999999999764 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|||||++.+|+.+||+||+.|+...++.+..+.++++.++++.+++.. .++++++|||||||||+|||||+.+|++||
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999766666666666788999999999976 789999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||++||+..+..+++.|+++++ .|.|+|+||||++++.. ||++++|++|+++..|+++++...
T Consensus 163 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred ECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999975 48999999999999976 999999999999999999888654
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-58 Score=436.14 Aligned_cols=212 Identities=27% Similarity=0.444 Sum_probs=196.6
Q ss_pred eEEEEeEEEEECCEe--eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 19 SVAVTSAYKKIGNHV--VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~--~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
||+++|++++|++++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 689999999998887 99999999999999999999999999999999999999999999999764 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
++|||||++.+|+.+||+||+.|+...++.+.++.++++.++++.++++. .++++++|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 59999999999999999999998766555666666788999999999976 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||+|||+..+..+++.|+++++ .|+|+|++|||++++.. ||++++|++|+++..|+++++...
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~ 231 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999974 48999999999999976 999999999999999999887653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-58 Score=431.31 Aligned_cols=207 Identities=29% Similarity=0.441 Sum_probs=191.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++++|+++ +|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++ +++|||||
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 57899999999988 99999999999999999999999999999999999999999999999886 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+.+||+||+.|+...++.+.. +++.++++.++++. .++++++|||||||||+|||||+.+|++|||||||+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 99999999999999987654443332 67889999999976 789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+||+..+..+++.|+++++ .|+|+|++|||++++.. ||++++|++|+++..|+++++.+
T Consensus 157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 217 (348)
T 3d31_A 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999974 58999999999999966 99999999999999999988764
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-58 Score=409.12 Aligned_cols=206 Identities=26% Similarity=0.413 Sum_probs=186.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++++|++ +|+|+||++++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+||
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 5789999999986 49999999999 99999999999999999999999999999999999876 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+++.+|++||+.++...++. ...++++.++++.+++.. .++++++|||||||||+|||||+++|++|||||||+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts 155 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred CCccCCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999999999999886543321 222567889999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.++..+++.|+++++ .|+|||++|||++++.. ||++++|++|+++..++++++.+
T Consensus 156 ~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999975 48999999999999866 99999999999999999877643
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-57 Score=411.41 Aligned_cols=210 Identities=22% Similarity=0.312 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEC--C---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEE
Q psy6612 19 SVAVTSAYKKIG--N---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIG 87 (291)
Q Consensus 19 ~l~~~~l~~~~~--~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig 87 (291)
||+++|++++|+ + +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 688999999997 5 7899999999999999999999999999999999999999999999999875 3599
Q ss_pred EEcCCC-CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC--C-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 88 YMPQEL-ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP--P-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 88 ~v~q~~-~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
|+||++ .+++.+|++||+.++...+ .+..+.++++.++++.+++. . .++++.+|||||||||+|||||+++|++|
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999996 4566789999999864332 22223346788899999998 7 68999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999997669999999999999976 99999999999999998877654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=414.73 Aligned_cols=212 Identities=27% Similarity=0.428 Sum_probs=187.3
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-----------eE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-----------DI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-----------~i 86 (291)
.+|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .+
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred ceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 4799999999999999999999999999999999999999999999999999999999999997653 49
Q ss_pred EEEcCCCCCC--CCCCHHHHHHHhccc----cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 87 GYMPQELALH--GELSIRETFRYYGYM----FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 87 g~v~q~~~l~--~~ltv~enl~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
||+||++.++ +.+||+||+.+.... ++...++..+++.++++.+++.. .++++.+|||||||||+|||||+.+
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 9999997643 356999999875321 12223344567889999999976 6899999999999999999999999
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEE--EEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI--IITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~ti--i~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|++|||||||+|||+.++..++++|++++++|+|| |++|||++++.. ||++++|++|+++..++++++.+
T Consensus 180 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 180 PQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999997558999 999999999865 99999999999999999887654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-56 Score=401.50 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=186.8
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCC
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELAL 95 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l 95 (291)
+.||+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. +.+||+||++.+
T Consensus 2 ~~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~----~~i~~v~q~~~~ 77 (253)
T 2nq2_C 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY----QSIGFVPQFFSS 77 (253)
T ss_dssp CEEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC----SCEEEECSCCCC
T ss_pred CceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe----ccEEEEcCCCcc
Confidence 34799999999998 8899999999999999999999999999999999999999999999842 569999999999
Q ss_pred CCCCCHHHHHHHhcccc-C---CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 96 HGELSIRETFRYYGYMF-D---MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~-~---~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+||+||+.++...+ + ......++++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 98999999998864321 1 123344567889999999976 689999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+.++..+++.|++++++ |+|||++|||++++.. ||++++|++|+ +..++++++..
T Consensus 158 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999866 8999999999999965 99999999999 88998877643
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=401.21 Aligned_cols=207 Identities=23% Similarity=0.328 Sum_probs=181.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecC----------eE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQIS----------DI 86 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~----------~i 86 (291)
||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 68999999999999999999999999999999999999999999999999 7899999999998762 38
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccc-cC--CChHHHHHHHHHHHHHcCCC-C-CCCCcCc-CChhHHHHHHHHHHHhcCC
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYM-FD--MTDDQIETRSKEILKLLELP-P-AKKIVGA-LSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~-~~--~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~-LSgGqkQrv~iAral~~~p 160 (291)
+|+||++.+++.+|++||+.+.... .+ ....+..+++.++++.++++ . .++++++ |||||||||+|||||+++|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999875321 12 22334456788899999994 5 6889999 9999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechh
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~ 225 (291)
++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++
T Consensus 163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999997678999999999999975 4999999999999999876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=400.22 Aligned_cols=211 Identities=21% Similarity=0.313 Sum_probs=186.6
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecC----------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQIS---------- 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~---------- 84 (291)
..||+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|+++.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 3478999999999999999999999999999999999999999999999999 4789999999998761
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhcc-c---cC---CChHHHHHHHHHHHHHcCCC-C-CCCCcC-cCChhHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGY-M---FD---MTDDQIETRSKEILKLLELP-P-AKKIVG-ALSGGQQRRISFAV 154 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~-~---~~---~~~~~~~~~~~~~l~~~~l~-~-~~~~~~-~LSgGqkQrv~iAr 154 (291)
.++|+||++.+++.+|+.||+.+... . ++ .+.++..+++.++++.+++. . .++++. +|||||||||+|||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAr 177 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 177 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHH
Confidence 39999999999999999999976431 1 11 23344456788999999995 4 578887 59999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh--hCeEEEEeCCEEEEEechhHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG--AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~--~d~i~~l~~G~i~~~~~~~~~ 227 (291)
||+.+|++|||||||+|||+.++..++++|++++++|+|||++|||++++.. ||++++|++|+++..++++++
T Consensus 178 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 252 (267)
T 2zu0_C 178 MAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 252 (267)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHH
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999997668999999999999864 899999999999999988765
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=402.33 Aligned_cols=211 Identities=26% Similarity=0.346 Sum_probs=184.5
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
..+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 457999999999986 7899999999999999999999999999999999999999999999999876 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHH-----HHHHHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQI-----ETRSKEILKLL--ELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.|||+||++.+|+ .||+||+.++..... ..... ...+.++++.+ |+.. .++++.+|||||||||+|||||
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTRTP-TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSSCC-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhcccCC-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 4999999999887 599999987543221 10111 12345667777 6654 6788999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|++|||||||+|||+.++..+++.|+++++ +|+|||++|||++++..||++++|++|+++..++++++..
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999964 5899999999999987799999999999999999887754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-55 Score=394.48 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=183.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIG 87 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig 87 (291)
+.||+++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++ +.+|
T Consensus 2 ~~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 2 SIVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp CEEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred CcEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 347899999976 6999999999999999999999999999999999999999 9999999876 2499
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC-----
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK----- 161 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~----- 161 (291)
|+||++.+++.+|++||+.++.. .... ++++.++++.+++.. .++++.+|||||||||+|||||+++|+
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~ 151 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQH-DKTR----TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPA 151 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCS-STTC----HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTT
T ss_pred EECCCCccCCCCcHHHHHHHhhc-cCCc----HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCC
Confidence 99999999999999999987532 1211 456788999999976 689999999999999999999999999
Q ss_pred --EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 --LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 --llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..+++.|++++++|+|||++|||++++.. ||++++|++|+++..++++++..
T Consensus 152 ~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 152 GQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999997669999999999999965 99999999999999999887643
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-55 Score=392.51 Aligned_cols=204 Identities=26% Similarity=0.412 Sum_probs=177.9
Q ss_pred ceEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeE
Q psy6612 18 HSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDI 86 (291)
Q Consensus 18 ~~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~i 86 (291)
+-++++|++++| +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 357899999999 467899999999999999999999999999999999999999999999999886 249
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAr 154 (291)
||+||++.+|+ .|++||+.++.. .... +++.++++.+++.. .++++.+|||||||||+|||
T Consensus 86 ~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAr 158 (247)
T 2ff7_A 86 GVVLQDNVLLN-RSIIDNISLANP--GMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIAR 158 (247)
T ss_dssp EEECSSCCCTT-SBHHHHHTTTCT--TCCH----HHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHH
T ss_pred EEEeCCCcccc-ccHHHHHhccCC--CCCH----HHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHH
Confidence 99999999887 599999987531 1122 23455566655532 34567899999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+++|++|||||||+|||+.++..+++.|++++ +|+|||++|||++.+..||++++|++|+++..++++++..
T Consensus 159 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 232 (247)
T 2ff7_A 159 ALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232 (247)
T ss_dssp HHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHT
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999995 5899999999999886799999999999999999877653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=386.91 Aligned_cols=197 Identities=21% Similarity=0.336 Sum_probs=174.7
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCC
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQEL 93 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~ 93 (291)
.+|+++|++++|++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+||++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 37899999999998 999999999999999999999999999999999999999999999999875 5699999999
Q ss_pred CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 94 ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 94 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
.+++.+|++||+.++...++. ..+ ++++.++++.++++..++++.+|||||||||+|||||+.+|++|||||||+|||
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred cCCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 999999999999886544332 112 456788999999953388899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 174 PILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
+.++..+++.|++++++|+|||++|||++++.. ||+++++ .|+|
T Consensus 166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 166 EDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 999999999999997668999999999999977 7777654 4544
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-55 Score=393.07 Aligned_cols=204 Identities=26% Similarity=0.404 Sum_probs=179.8
Q ss_pred eEEEEeEEEEE-CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKI-GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~-~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
||+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ +.+||
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 57899999999 678899999999999999999999999999999999999999999999999875 25999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CC-----------CCcCcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AK-----------KIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~-----------~~~~~LSgGqkQrv~iAral 156 (291)
+||++.+|+ .|++||+.++.. .... .+++.++++.+++.. .+ +++.+|||||||||+|||||
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~-~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral 154 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLE-GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTT-SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhcc-CCCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHH
Confidence 999999887 499999986421 1112 234667788888753 33 45679999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+++|++|||||||+|||+.++..+++.|++++ +|+|||++|||++.+..||++++|++|+++..++++++..
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHH
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999997 6899999999999887799999999999999898887754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-54 Score=399.16 Aligned_cols=206 Identities=24% Similarity=0.389 Sum_probs=178.7
Q ss_pred cceEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eE
Q psy6612 17 KHSVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~i 86 (291)
...|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 44699999999994 578999999999999999999999999999999999999999999999999872 59
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-----------CC-CCCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-----------PP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
|||||++.+|+ .||+||+.++.... ..++ +.++++.+++ +. ..++..+|||||||||+|||
T Consensus 131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~--~~~~----~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiAR 203 (306)
T 3nh6_A 131 GVVPQDTVLFN-DTIADNIRYGRVTA--GNDE----VEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIAR 203 (306)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTSTTC--CHHH----HHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHH
T ss_pred EEEecCCccCc-ccHHHHHHhhcccC--CHHH----HHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHH
Confidence 99999999996 49999998764322 2222 2233333332 22 35667899999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+.+|++|||||||++||+.++..+++.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 204 AL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp HHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999864 6899999999999988999999999999999999988653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-54 Score=387.67 Aligned_cols=214 Identities=25% Similarity=0.375 Sum_probs=181.6
Q ss_pred ccCCcccccccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 7 KRIDPEIIEVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 7 ~~~~~~~~~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+++.+.......+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.++
T Consensus 5 ~~~~~~~~~~~~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i 83 (260)
T 2ghi_A 5 FSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNV 83 (260)
T ss_dssp CCCCHHHHHHCCCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEG
T ss_pred ccccccccccCCeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEh
Confidence 3443334444568999999999976 4699999999999999999999999999999999999987 89999999876
Q ss_pred ---------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcC
Q psy6612 84 ---------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGAL 142 (291)
Q Consensus 84 ---------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~L 142 (291)
+.+||+||++.+|+ .|++||+.++.. .... +++.++++.+++.. .++++.+|
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~--~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL--DATD----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT--TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC--CCCH----HHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 35999999999886 599999987431 1121 23445566555421 24678899
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEe
Q psy6612 143 SGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRL 222 (291)
Q Consensus 143 SgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~ 222 (291)
||||||||+|||||+++|++|||||||+|||+.++..+++.|+++++ |+|||++|||++.+..||++++|++|+++..+
T Consensus 157 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 157 SGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235 (260)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999964 89999999999988679999999999999999
Q ss_pred chhHHHH
Q psy6612 223 VHHDIVE 229 (291)
Q Consensus 223 ~~~~~~~ 229 (291)
+++++..
T Consensus 236 ~~~~l~~ 242 (260)
T 2ghi_A 236 THKDLLK 242 (260)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9887754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-54 Score=389.62 Aligned_cols=199 Identities=22% Similarity=0.318 Sum_probs=180.4
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEE-
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIG- 87 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig- 87 (291)
||+++|++++|++ +++|+++||+++ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++ +.+|
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 5789999999987 789999999999 9999999999999999999999999 9999999999875 3699
Q ss_pred EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEE
Q psy6612 88 YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 88 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llll 165 (291)
|+||++.+ .+|++||+.++...+.. .++++.++++.+++. . .++++++|||||||||+|||||+++|++|||
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~~~~~----~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEELKGL----DRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHHHTCC----CHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred EeCCCCcc--CCcHHHHHHHhhhhcch----HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999987 78999999886543321 134678899999998 6 6899999999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hC-eEEEEeCCEEEEEechhHHH
Q psy6612 166 DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AH-NIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 166 DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d-~i~~l~~G~i~~~~~~~~~~ 228 (291)
||||+|||+.++..+++.|+++++ |||++|||++++.. || ++++|++|+++..++++++.
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred ECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999853 99999999999866 99 99999999999999887654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-53 Score=378.19 Aligned_cols=200 Identities=25% Similarity=0.301 Sum_probs=170.2
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~ 94 (291)
+.+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.
T Consensus 4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----~i~~v~q~~~ 79 (229)
T 2pze_A 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQFSW 79 (229)
T ss_dssp CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS----CEEEECSSCC
T ss_pred cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC----EEEEEecCCc
Confidence 45799999999994 57899999999999999999999999999999999999999999999998 4999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC------------CCCCCcCcCChhHHHHHHHHHHHhcCCCE
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP------------PAKKIVGALSGGQQRRISFAVSLLHNPKL 162 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~------------~~~~~~~~LSgGqkQrv~iAral~~~p~l 162 (291)
+++. |++||+.++... ... +..++++.+++. ..++++.+|||||||||+|||||+++|++
T Consensus 80 ~~~~-tv~enl~~~~~~---~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 80 IMPG-TIKENIIFGVSY---DEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp CCSB-CHHHHHHTTSCC---CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred ccCC-CHHHHhhccCCc---ChH----HHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9885 999999875321 111 122233333331 12345689999999999999999999999
Q ss_pred EEEcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..+++.+ .++. +|+|||++|||++++..||++++|++|+++..++++++.+
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999974 5664 4799999999999987799999999999999999877643
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=379.52 Aligned_cols=201 Identities=22% Similarity=0.373 Sum_probs=171.0
Q ss_pred eEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 19 SVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 19 ~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+|+++|++++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .+||+||++.+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----SVAYVPQQAWI- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----CEEEECSSCCC-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----EEEEEcCCCcC-
Confidence 689999999997 57899999999999999999999999999999999999999999999998 49999999875
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHH---HHHHcCCC------CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKE---ILKLLELP------PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~---~l~~~~l~------~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
+.+|++||+.++... ..+.. +++.+ +++.+++. ..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 ~~~tv~enl~~~~~~---~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 78 QNDSLRENILFGCQL---EEPYY-RSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp CSEEHHHHHHTTSCC---CTTHH-HHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred CCcCHHHHhhCcccc---CHHHH-HHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 468999999875432 11111 12222 22333331 1367899999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHH---HhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 168 PTVGLDPILSQIIWDRLK---EMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~---~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||+|||+.++..+++.|. ++. +|+|||++|||++.+..||++++|++|+++..++++++..
T Consensus 154 Pts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp TTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 999999999999999995 443 5899999999999886799999999999999999887754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=402.23 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=185.4
Q ss_pred cccccceEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 13 IIEVKHSVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
.+.....|+++|++|+| +++++|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++
T Consensus 13 ~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 13 IWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 44445679999999999 67889999999999999999999999999999999999998 899999999876
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCc-----------CChhHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGA-----------LSGGQQRR 149 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~-----------LSgGqkQr 149 (291)
+.+|||||++.+|+ +||+||+.+... .. ++++.++++.+++.. .++++.+ ||||||||
T Consensus 92 ~rr~ig~v~Q~~~lf~-~tv~enl~~~~~---~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQR 163 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFS-GTFRKNLDPNAA---HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQL 163 (390)
T ss_dssp HHHTEEEESCCCCCCS-EEHHHHHCTTCC---SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHH
T ss_pred HhCCEEEEcCCcccCc-cCHHHHhhhccc---cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHH
Confidence 35999999999997 699999964321 11 346778899999975 6788887 99999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|+|||||+.+|++|||||||++||+..+..+++.|+++. .++|+|++|||++.+..||||++|++|+++..|+++++..
T Consensus 164 valARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 164 MCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp HHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999875 4799999999997766699999999999999999998876
Q ss_pred H
Q psy6612 230 S 230 (291)
Q Consensus 230 ~ 230 (291)
.
T Consensus 243 ~ 243 (390)
T 3gd7_A 243 Y 243 (390)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=401.90 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=180.9
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
..+++++|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ +.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcC
Confidence 457999999999974 6899999999999999999999999999999999999999999999999886 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iA 153 (291)
+|||||++.+|+. |++||+.++.. ...+ ++++.++++.+++.+ .+++..+||||||||++||
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 419 FALVSQNVHLFND-TIANNIAYAAE-GEYT----REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred eEEEcCCCccccc-cHHHHHhccCC-CCCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 9999999999985 99999987531 1122 234556666666532 2345678999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++|||||||++||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999864 899999999999998899999999999999999988764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=401.91 Aligned_cols=206 Identities=23% Similarity=0.355 Sum_probs=180.9
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------e
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------D 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ 85 (291)
..+++++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+++ .
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~ 418 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhh
Confidence 457999999999973 78999999999999999999999999999999999999999999999999862 5
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iA 153 (291)
+||+||++.+|+. |++||+.++.. ...++ +++.++++.+++.+ .+++..+||||||||++||
T Consensus 419 i~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 419 VALVSQNVHLFND-TVANNIAYART-EEYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp EEEECSSCCCCSS-BHHHHHHTTTT-SCCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred CeEEccCCcCCCC-CHHHHHhccCC-CCCCH----HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 9999999999985 99999987531 12222 34556666665531 2345689999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||+++|++||||||||+||+.+++.+.+.|+++.+ |+|+|++||+++.+..||++++|++|++++.|+++++.+
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999874 899999999999987799999999999999999988764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=400.17 Aligned_cols=210 Identities=30% Similarity=0.427 Sum_probs=179.1
Q ss_pred cceEEEEeEEEEEC--CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIG--NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~--~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ++
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 418 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGH 418 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhh
Confidence 45799999999994 46899999999999999999999999999999999999999999999999987 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLL--ELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
+|||||++.+|+. |++||+.++... ...++..+.++ +.++.+ |++. .+++..+||||||||++|||||+
T Consensus 419 i~~v~Q~~~lf~~-tv~eni~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 419 ISAVPQETVLFSG-TIKENLKWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp EEEECSSCCCCSE-EHHHHHTTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred eEEECCCCcCcCc-cHHHHHhccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999976 999999875321 22222222211 112222 3322 35778899999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999985 58999999999999988999999999999999999988754
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=366.28 Aligned_cols=197 Identities=25% Similarity=0.312 Sum_probs=155.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
..+|+++|+++. .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| ++||+||++.+|
T Consensus 38 ~~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----~i~~v~Q~~~l~ 111 (290)
T 2bbs_A 38 DDSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----RISFCSQNSWIM 111 (290)
T ss_dssp --------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS----CEEEECSSCCCC
T ss_pred CceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC----EEEEEeCCCccC
Confidence 457889999985 36799999999999999999999999999999999999999999999998 499999999998
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC------------CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP------------AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+. |++||+. ... .... ...++++.+++.. .++++.+||||||||++|||||+++|++||
T Consensus 112 ~~-tv~enl~-~~~---~~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lll 182 (290)
T 2bbs_A 112 PG-TIKENII-GVS---YDEY----RYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 182 (290)
T ss_dssp SS-BHHHHHH-TTC---CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred cc-cHHHHhh-Ccc---cchH----HHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEE
Confidence 85 9999997 321 1111 1223334444321 234568999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||||+|||+.++..+++.+ +++. +|+|||++|||++.+..||++++|++|+++..|+++++..
T Consensus 183 LDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 183 LDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 99999999999999999974 5554 4899999999999987799999999999999999888754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=395.65 Aligned_cols=206 Identities=26% Similarity=0.389 Sum_probs=178.3
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------e
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------D 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ 85 (291)
...++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.+++ +
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~ 416 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 446999999999964 57999999999999999999999999999999999999999999999999873 5
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-----------C-CCCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----------P-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~-~~~~~~~LSgGqkQrv~iA 153 (291)
+||+||++.+|+. |++||+.++.. ....+ ++.++++..++. . ..++..+||||||||++||
T Consensus 417 i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 417 IGLVQQDNILFSD-TVKENILLGRP--TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCS--SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eEEEeCCCccCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 9999999999987 99999987532 12222 334444444432 1 2345568999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+++|++||||||||+||+.++..+.+.++++. +++|+|++||+++.+..||++++|++|+++++|+++++.+.
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~ 565 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 565 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999999986 47899999999999978999999999999999999987653
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-49 Score=397.50 Aligned_cols=206 Identities=27% Similarity=0.415 Sum_probs=178.4
Q ss_pred cceEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eE
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~i 86 (291)
...|+++|++++|++ +++|+|+||++++||++||+||||||||||+|+|+|+++|++|+|.++|.+++ ++
T Consensus 352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 446999999999964 67999999999999999999999999999999999999999999999999873 59
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-C-----------CCCcCcCChhHHHHHHHHH
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-A-----------KKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~-----------~~~~~~LSgGqkQrv~iAr 154 (291)
||+||++.+|+. |++||+.++.. ..+++ .+.++++.+++.+ . .+...+||||||||++|||
T Consensus 432 ~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 432 GIVLQDTILFST-TVKENLKYGNP--GATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEECTTCCCCSS-BHHHHHHSSST--TCCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred EEEeCCCccccc-cHHHHHhcCCC--CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 999999999975 99999987532 12222 2344455544422 1 2233689999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||+++|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+++++.+.
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999986 58999999999999988999999999999999999987653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=404.61 Aligned_cols=212 Identities=28% Similarity=0.401 Sum_probs=183.6
Q ss_pred cccccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------
Q psy6612 13 IIEVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------ 83 (291)
Q Consensus 13 ~~~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------ 83 (291)
.......|+++|++++|.+ .++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++
T Consensus 1070 ~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~ 1149 (1321)
T 4f4c_A 1070 KKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPE 1149 (1321)
T ss_dssp CCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHH
T ss_pred CCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHH
Confidence 3444557999999999953 4699999999999999999999999999999999999999999999999997
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CCCCcC----cCChhHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AKKIVG----ALSGGQQR 148 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~~~~~----~LSgGqkQ 148 (291)
++|+||||+|.+|+. |++||+.|+......++ +.+.++++..++. . .+..++ +|||||||
T Consensus 1150 ~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1150 HTRSQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HHHTTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HHHhheEEECCCCEeeCc-cHHHHHhccCCCCCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 469999999999997 99999987532222333 3455556665552 2 355554 69999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHH
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIV 228 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (291)
|++|||||+++|++||||||||+||+++.+.+.+.|+++. +|+|+|+|+|+++.+..||+|++|++|+|++.|+++++.
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999875 479999999999999999999999999999999999987
Q ss_pred HH
Q psy6612 229 ES 230 (291)
Q Consensus 229 ~~ 230 (291)
+.
T Consensus 1304 ~~ 1305 (1321)
T 4f4c_A 1304 SE 1305 (1321)
T ss_dssp HC
T ss_pred hC
Confidence 64
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-46 Score=370.42 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=180.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+.+++++++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..+||+||++.++
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~----~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD----LTVAYKPQYIKAE 429 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC----CCEEEECSSCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe----eEEEEEecCccCC
Confidence 3479999999999874 6899999999999999999999999999999999999999999873 4699999999888
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+.+||.|++...... . ....+++.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 430 ~~~tv~e~~~~~~~~-~---~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~ 505 (607)
T 3bk7_A 430 YEGTVYELLSKIDSS-K---LNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 505 (607)
T ss_dssp CSSBHHHHHHHHHHH-H---HHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CCCcHHHHHHhhhcc-C---CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHH
Confidence 889999988653110 0 011346778899999976 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVES 230 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~~ 230 (291)
++..++++|++++ +.|+|||+||||++++.. |||+++|++ |++...|+++++...
T Consensus 506 ~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 506 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 9999999999997 568999999999999976 999999986 788888998887653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=363.05 Aligned_cols=206 Identities=24% Similarity=0.285 Sum_probs=177.2
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+.+++++++++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++. .++|+||+....
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~---~i~~~~q~~~~~ 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ---ILSYKPQRIFPN 342 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC---CEEEECSSCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe---eeEeechhcccc
Confidence 4578999999999874 588889999999999999999999999999999999999999998764 589999998777
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
..+||.+|+.+....+ ... ....+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 343 ~~~tv~~~l~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 343 YDGTVQQYLENASKDA-LST--SSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp CSSBHHHHHHHHCSST-TCT--TSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred cCCCHHHHHHHhhhhc-cch--hHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHH
Confidence 7889999998642211 111 1235678899999965 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVE 229 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~ 229 (291)
++..++++|++++ +.|+|||+||||++++.. ||||++|++ |.....+++..+..
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999997 468999999999999976 999999986 45555566655443
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=366.93 Aligned_cols=205 Identities=22% Similarity=0.333 Sum_probs=179.4
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
+.+++++++++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+. ..+||+||++..+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~----~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD----LTVAYKPQYIKAD 359 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC----CCEEEECSSCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC----ceEEEEecCCcCC
Confidence 3579999999999875 6999999999999999999999999999999999999999999872 4699999999887
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
+.+||.+++...... ... ..+++.++++.+++.. .++++.+|||||||||+|||||+.+|++|||||||+|||+.
T Consensus 360 ~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~ 435 (538)
T 1yqt_A 360 YEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVE 435 (538)
T ss_dssp CSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHH
T ss_pred CCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 889999988643110 001 1345778899999965 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVES 230 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~~ 230 (291)
++..++++|++++ +.|.|||+||||++++.. |||+++|++ |+++..|+++++...
T Consensus 436 ~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 436 QRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999997 458999999999999976 999999986 788888998887653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-45 Score=389.56 Aligned_cols=210 Identities=29% Similarity=0.420 Sum_probs=178.9
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS--------- 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~--------- 84 (291)
+..|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+++
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 464 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHh
Confidence 446999999999964 47999999999999999999999999999999999999999999999999873
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHcC--CCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLLE--LPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~~--l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.||||||++.+|+. |++||+.++.. ....++..+.++ +.++.+. ++. ......+||||||||++|||||
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal 541 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHH
Confidence 49999999999987 99999998643 223333333222 2233332 211 3456678999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+.+|++||||||||+||+.+.+.+.+.++++. +|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 542 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 542 VRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp HHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998875 58999999999999988999999999999999999987653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-45 Score=390.43 Aligned_cols=207 Identities=28% Similarity=0.428 Sum_probs=179.8
Q ss_pred cccceEEEEeEEEEEC---CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-------
Q psy6612 15 EVKHSVAVTSAYKKIG---NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS------- 84 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~---~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~------- 84 (291)
..+..++++|++++|. ++++|+|+||+|++|+.+||+||+|||||||+++|+|+++|++|+|.++|.+++
T Consensus 411 ~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 411 KIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred CCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHH
Confidence 3455699999999995 468999999999999999999999999999999999999999999999999873
Q ss_pred --eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-------CC-CCCCc----CcCChhHHHHH
Q psy6612 85 --DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PP-AKKIV----GALSGGQQRRI 150 (291)
Q Consensus 85 --~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~~~~----~~LSgGqkQrv 150 (291)
+||||+|+|.+|.. |++|||.|+.. ..+.+ ++.++++..++ ++ .+..+ ..||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~--~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE--GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT--TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc--cchHH----HHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 59999999999987 99999987632 12333 34444544443 22 23444 46999999999
Q ss_pred HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 151 SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 151 ~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+||||++.+|++||||||||+||+++.+.+.+.|.++. +|+|+|++||+++.+..||+|++|++|+|+++|+++++.+
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999999999999999986 5899999999999999999999999999999999998754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=391.81 Aligned_cols=208 Identities=26% Similarity=0.402 Sum_probs=176.8
Q ss_pred cceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 17 KHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
+..++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 456999999999965 3699999999999999999999999999999999999999999999999886 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-------CC-CC----CCcCcCChhHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-------PP-AK----KIVGALSGGQQRRISF 152 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-~~----~~~~~LSgGqkQrv~i 152 (291)
++|||||++.+|+ .|++||+.++......+.++..+ .++..++ .. .+ ....+||||||||++|
T Consensus 1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~----~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVR----AAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHH----HHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHH
T ss_pred ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHH----HHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHH
Confidence 5999999998886 59999998754322233333332 3333332 11 22 3446899999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+++|++|||||||+|||+.+++.+.+.|+++. +|+|+|++|||++.+..||||++|++|++++.|+++++.+.
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999998864 58999999999999977999999999999999999988653
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-43 Score=350.15 Aligned_cols=201 Identities=21% Similarity=0.259 Sum_probs=171.7
Q ss_pred EeEEEEECC-EeeEeeeeEEEeCC-----cEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC
Q psy6612 23 TSAYKKIGN-HVVLKGLNLNVPEN-----KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH 96 (291)
Q Consensus 23 ~~l~~~~~~-~~~L~~vsl~i~~G-----ei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~ 96 (291)
.+++++|.+ ..+++++||++.+| |++||+||||||||||+|+|+|+++|++|+. +. -..++|+||+....
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~---~~~i~~~~q~~~~~ 425 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP---KLNVSMKPQKIAPK 425 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC---SCCEEEECSSCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc---CCcEEEeccccccc
Confidence 445677865 46899999999999 7899999999999999999999999999974 11 14699999998766
Q ss_pred CCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 97 GELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
...|+.+++...... .... ...+.++++.+++.. .++++.+|||||||||+|||||+++|++|||||||+|||+.
T Consensus 426 ~~~tv~e~~~~~~~~-~~~~---~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~ 501 (608)
T 3j16_B 426 FPGTVRQLFFKKIRG-QFLN---PQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501 (608)
T ss_dssp CCSBHHHHHHHHCSS-TTTS---HHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHH
T ss_pred CCccHHHHHHHHhhc-cccc---HHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 667999987542211 1111 235677899999976 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC--CEEEEEechhHHHHHH
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD--DQYIGRLVHHDIVESL 231 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~--G~i~~~~~~~~~~~~~ 231 (291)
++..++++|++++ +.|+|||+||||++++.. |||+++|++ |+++..|+++++....
T Consensus 502 ~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 502 QRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGC 561 (608)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhhh
Confidence 9999999999986 468999999999999976 999999997 8999999999887753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=353.80 Aligned_cols=184 Identities=22% Similarity=0.321 Sum_probs=159.6
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EECCEec---------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------KLSFRQI--------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~--------- 83 (291)
+|++|+|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred cCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 6899999876 5999999 999999999999999999999999999999999996 4566543
Q ss_pred --CeEEEEcCCCCCCCC---CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQELALHGE---LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~---ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
..+++++|...+++. .|+.+++.... ..+++.++++.+|+.. .++++++|||||||||+|||||+
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---------~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---------ETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---------SSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhhhh---------HHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence 247899997544332 38888875311 1135678999999976 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
++|++|||||||++||+.++..++++|++++++|+|||+||||++++.. ||++++|++|
T Consensus 175 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999998779999999999999976 9999999864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-44 Score=357.66 Aligned_cols=184 Identities=23% Similarity=0.339 Sum_probs=159.7
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE---------EECCEec---------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI---------KLSFRQI--------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I---------~~~g~~~--------- 83 (291)
+|++++|++. .+|+++| ++++||++||+||||||||||+|+|+|+++|++|++ .++|.++
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 7899999876 5999999 999999999999999999999999999999999996 4566543
Q ss_pred --CeEEEEcCCCCCCC---CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh
Q psy6612 84 --SDIGYMPQELALHG---ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL 157 (291)
Q Consensus 84 --~~ig~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~ 157 (291)
..+++++|....++ ..|+.||+... .. .+++.++++.+|+.. .++++++|||||||||+|||||+
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~-----~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKV----DE-----VGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHT----CC-----SSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhh----HH-----HHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 24789998753322 13899998641 11 134678899999976 68999999999999999999999
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCC
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDD 216 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G 216 (291)
++|++|||||||++||+.++..++++|++++++|+|||+||||++++.. ||++++|+++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 9999999999999999999999999999998779999999999999976 9999999865
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=353.80 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=143.6
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHH---------------------HHHHcCCCCC-------ccEEEECCEe
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---------------------NCIVGRNTLD-------AGTIKLSFRQ 82 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl---------------------~~i~gl~~p~-------~G~I~~~g~~ 82 (291)
...+|+||||+|++||++||+||||||||||+ ++++|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 46799999999999999999999999999998 9999999998 4555666654
Q ss_pred c-----CeEEEEcCCCCC-------------------CCCCCHHHHHHHhccccCC--ChHHHH------HHHHHHHHHc
Q psy6612 83 I-----SDIGYMPQELAL-------------------HGELSIRETFRYYGYMFDM--TDDQIE------TRSKEILKLL 130 (291)
Q Consensus 83 ~-----~~ig~v~q~~~l-------------------~~~ltv~enl~~~~~~~~~--~~~~~~------~~~~~~l~~~ 130 (291)
. ..+|+++|.+.+ ++.+|++||+.++...... ...... ....++++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 3 345666665433 3567999999774322110 000000 0112358889
Q ss_pred CCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 131 ELPP--AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 131 ~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
|+.+ .++++.+|||||||||+|||||+++|+ +|||||||+|||+.++..++++|++++++|.|||+||||++.+..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 9964 589999999999999999999999998 999999999999999999999999998789999999999998877
Q ss_pred hCeEEEE------eCCEEEEEechhHHHH
Q psy6612 207 AHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 207 ~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
||++++| ++|++++.|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 9999999 8999999999988764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-43 Score=362.09 Aligned_cols=202 Identities=25% Similarity=0.318 Sum_probs=166.8
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCC
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~ 94 (291)
+.+|+++|++++|++ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|. .++||++|++.
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--~~I~yv~Q~~~ 746 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--CRIAYIKQHAF 746 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--CCEEEECHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--cceEeeccchh
Confidence 457999999999975 67999999999999999999999999999999999999999999999874 36999999853
Q ss_pred C----CCCCCHHHHHHHhccc-----------------------------------------------------------
Q psy6612 95 L----HGELSIRETFRYYGYM----------------------------------------------------------- 111 (291)
Q Consensus 95 l----~~~ltv~enl~~~~~~----------------------------------------------------------- 111 (291)
. ....|+.+++.+....
T Consensus 747 ~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 1 2235777776541100
Q ss_pred --------cCC--------C--------------------------hHHHHHHHHHHHHHcCCCC---CCCCcCcCChhH
Q psy6612 112 --------FDM--------T--------------------------DDQIETRSKEILKLLELPP---AKKIVGALSGGQ 146 (291)
Q Consensus 112 --------~~~--------~--------------------------~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGq 146 (291)
..+ + ....+++++++++.+|+.. .++++++|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 000 0 0001346778999999963 478999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEec
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLV 223 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~ 223 (291)
||||+|||||+++|++|||||||+|||+.++..+.+.|+++ +.|||++|||++++.. ||++++|++|+++..|+
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCCEEECCBTTBCCC---
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999988775 5799999999999976 99999999999876653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=353.14 Aligned_cols=193 Identities=22% Similarity=0.307 Sum_probs=167.1
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---CeEEEEcCCC-C
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---SDIGYMPQEL-A 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---~~ig~v~q~~-~ 94 (291)
.|...+++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+. .+++|++|++ .
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~~ 506 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDIDG 506 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCCC
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEcccccc
Confidence 4666799999999999999999999999999999999999999999995 333 33322 2478999985 6
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
+++.+|+.||+.+ ...+. ++++.++++.+|+. . .++++++||||||||++|||||+.+|++|||||||+||
T Consensus 507 ~~~~ltv~e~l~~--~~~~~-----~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~L 579 (986)
T 2iw3_A 507 THSDTSVLDFVFE--SGVGT-----KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHL 579 (986)
T ss_dssp CCTTSBHHHHHHT--TCSSC-----HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTC
T ss_pred cccCCcHHHHHHH--hhcCH-----HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCC
Confidence 7888999999975 22221 45788899999995 3 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEE-EEechhHHHH
Q psy6612 173 DPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYI-GRLVHHDIVE 229 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~-~~~~~~~~~~ 229 (291)
|+.++..++++|++ .|.|||++|||++++.. ||++++|++|+++ ..|+.+++..
T Consensus 580 D~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 580 DTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp CHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999998 58999999999999976 9999999999996 5788876643
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=333.38 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=152.0
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH----------------------cCCCCCccEEEECCEecC-----
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV----------------------GRNTLDAGTIKLSFRQIS----- 84 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~----------------------gl~~p~~G~I~~~g~~~~----- 84 (291)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998764 44333 457777765541
Q ss_pred ---------------------------------------------eEEEEcCCCCCCC----------------------
Q psy6612 85 ---------------------------------------------DIGYMPQELALHG---------------------- 97 (291)
Q Consensus 85 ---------------------------------------------~ig~v~q~~~l~~---------------------- 97 (291)
..|+++|+..+++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 0133333332222
Q ss_pred ----------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC---E
Q psy6612 98 ----------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPK---L 162 (291)
Q Consensus 98 ----------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~---l 162 (291)
.+|+.||+.+.... . ..++..+.+..+++.. .++++.+|||||||||+|||||+++|+ +
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~l 567 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI----P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTL 567 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC----H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEE
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh----h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcE
Confidence 47899998875321 1 1235567788899863 588999999999999999999999874 9
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 163 LILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 163 lllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
|||||||+|||+.++..++++|++++++|.|||+||||++.+..|||+++| ++|+++++|+++++.+
T Consensus 568 lllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~ 640 (670)
T 3ux8_A 568 YILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 640 (670)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHh
Confidence 999999999999999999999999987899999999999988779999999 8999999999988753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=326.20 Aligned_cols=188 Identities=19% Similarity=0.269 Sum_probs=149.9
Q ss_pred EeEEEEECCE-eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE-----------EECCEec-------
Q psy6612 23 TSAYKKIGNH-VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----------KLSFRQI------- 83 (291)
Q Consensus 23 ~~l~~~~~~~-~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I-----------~~~g~~~------- 83 (291)
++++++|+.. ..|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .+.|..+
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 3578999764 4677777 699999999999999999999999999999999998 3344332
Q ss_pred --Ce--EEEEcCCCCC------CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHH
Q psy6612 84 --SD--IGYMPQELAL------HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 --~~--ig~v~q~~~l------~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~i 152 (291)
.. ..+.+|.... .+..++.+++.... . ...+++.++++.+++.. .++++.+|||||||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~---~----~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 160 LEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM---E----KSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI 232 (608)
T ss_dssp HHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC---C----SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred HHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh---h----hHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence 11 1233332211 11124555443211 1 12356788999999976 689999999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
||||+++|++|||||||++||+.++..++++|++++++|+|||+||||++++.. ||++++|++|..
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999998779999999999999976 999999988653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=320.26 Aligned_cols=182 Identities=23% Similarity=0.291 Sum_probs=147.2
Q ss_pred eEEEEECCEeeEeeeeEE-EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE-----------EECCEec--------
Q psy6612 24 SAYKKIGNHVVLKGLNLN-VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI-----------KLSFRQI-------- 83 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl~-i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I-----------~~~g~~~-------- 83 (291)
+.+.+||.+ .++-..|. .++||++||+||||||||||+|+|+|+++|++|+| .++|+++
T Consensus 4 ~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 456788754 24445554 45999999999999999999999999999999998 5677654
Q ss_pred ---CeEEEEcCCC----CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQEL----ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 84 ---~~ig~v~q~~----~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra 155 (291)
..+...+|.. .++. .++.+++.... .+++++++++.+++.. .++++.+|||||||||+||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~v~~~l~~~~---------~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~a 152 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLK-GTVNEILTKID---------ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAAS 152 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCC-SBHHHHHHHHC---------CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhcc-CcHHHHhhcch---------hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 1244444443 2333 37877654211 1124667899999976 689999999999999999999
Q ss_pred HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCE
Q psy6612 156 LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 156 l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~ 217 (291)
|+++|++|||||||++||+.++..++++|+++++ |+|||+||||++++.. ||++++|++|.
T Consensus 153 L~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 153 LLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999975 8999999999999976 99999998653
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=316.93 Aligned_cols=201 Identities=25% Similarity=0.375 Sum_probs=161.1
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-cCC-------CCCcc-------------EE
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-GRN-------TLDAG-------------TI 76 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-gl~-------~p~~G-------------~I 76 (291)
..|++++++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .|
T Consensus 628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 4688888862 3799999999999999999999999999999864 221 12333 36
Q ss_pred EECCEec----------------------------CeEEEEcCCCCCCC-------------------------------
Q psy6612 77 KLSFRQI----------------------------SDIGYMPQELALHG------------------------------- 97 (291)
Q Consensus 77 ~~~g~~~----------------------------~~ig~v~q~~~l~~------------------------------- 97 (291)
.+++.++ +.+||++|.+.+.+
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 7776553 12467777543311
Q ss_pred -----------------------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 98 -----------------------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 98 -----------------------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
.+|+.|++.|+... . . ..+..++++.++|.. .++++.+|||||||||+|
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~----~-~-~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~L 856 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI----P-K-IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKL 856 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC----H-H-HHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHH
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc----h-h-HHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHH
Confidence 35777777664321 1 1 234567899999965 589999999999999999
Q ss_pred HHHHhcCC---CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEec
Q psy6612 153 AVSLLHNP---KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLV 223 (291)
Q Consensus 153 Aral~~~p---~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~ 223 (291)
|++|+++| ++|||||||+|||+.++..++++|++++++|.|||++|||++++..||++++| ++|++++.|+
T Consensus 857 AraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~ 936 (972)
T 2r6f_A 857 AAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936 (972)
T ss_dssp HHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEES
T ss_pred HHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecC
Confidence 99999875 99999999999999999999999999988899999999999998779999999 7899999999
Q ss_pred hhHHHH
Q psy6612 224 HHDIVE 229 (291)
Q Consensus 224 ~~~~~~ 229 (291)
++++..
T Consensus 937 ~~el~~ 942 (972)
T 2r6f_A 937 PEEVAE 942 (972)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-37 Score=315.88 Aligned_cols=192 Identities=25% Similarity=0.387 Sum_probs=153.8
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHH---------HHHHcCCCCC------cc------EEEECCEec-------
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLL---------NCIVGRNTLD------AG------TIKLSFRQI------- 83 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl---------~~i~gl~~p~------~G------~I~~~g~~~------- 83 (291)
...|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 4555544332 22 233332221
Q ss_pred -------------------------------------------CeEEEEcCCCCCCC-----------------------
Q psy6612 84 -------------------------------------------SDIGYMPQELALHG----------------------- 97 (291)
Q Consensus 84 -------------------------------------------~~ig~v~q~~~l~~----------------------- 97 (291)
...|+++++..+++
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 11356666655544
Q ss_pred ---------CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC---CEE
Q psy6612 98 ---------ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP---KLL 163 (291)
Q Consensus 98 ---------~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p---~ll 163 (291)
.+|+.|++.|+... ....++.++++.+|+.. .++++.+|||||||||+|||||+++| ++|
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~------~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL 830 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI------PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY 830 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC------HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc------hhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE
Confidence 36777887765321 12345678899999964 57899999999999999999999876 799
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
||||||+|||+.+++.+++.|++++++|.|||+||||++.+..||+|++| ++|+++++|+++++.+
T Consensus 831 ILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 831 ILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999999999999999999988899999999999999779999999 8999999999998765
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=313.97 Aligned_cols=202 Identities=21% Similarity=0.326 Sum_probs=156.8
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHH-HHcCC-------CC-----------------
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNC-IVGRN-------TL----------------- 71 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~-i~gl~-------~p----------------- 71 (291)
+..|+++++++ .+|+||||+|++||++||+|+||||||||+++ |+|++ +|
T Consensus 500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 45688999975 26999999999999999999999999999996 76543 23
Q ss_pred -Ccc-------EEEECCEecC----------------------------eEEEEcCCC----------------------
Q psy6612 72 -DAG-------TIKLSFRQIS----------------------------DIGYMPQEL---------------------- 93 (291)
Q Consensus 72 -~~G-------~I~~~g~~~~----------------------------~ig~v~q~~---------------------- 93 (291)
.+| .|.++|.++. ..||.++..
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 355 5677765541 012221111
Q ss_pred CCC------------------------CCCCH--------HHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCc
Q psy6612 94 ALH------------------------GELSI--------RETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIV 139 (291)
Q Consensus 94 ~l~------------------------~~ltv--------~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~ 139 (291)
.++ ...++ .+++.|+. . . . ..+++.++++.+++.. .++++
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~---~-~-~-~~~~~~~~L~~~gL~~~~l~~~~ 728 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA---D-E-S-AIFRALDTLREVGLGYLRLGQPA 728 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT---T-S-H-HHHHHHHHHHHTTCTTSBTTCCG
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh---c-c-h-HHHHHHHHHHHcCCCcccccCCc
Confidence 111 12344 44443321 1 1 1 2346788999999975 48999
Q ss_pred CcCChhHHHHHHHHHHHhcC---CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE---
Q psy6612 140 GALSGGQQRRISFAVSLLHN---PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM--- 213 (291)
Q Consensus 140 ~~LSgGqkQrv~iAral~~~---p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l--- 213 (291)
.+|||||||||+||++|+++ |++|||||||+|||+..+..++++|++++++|.|||++|||++++..||++++|
T Consensus 729 ~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~ 808 (842)
T 2vf7_A 729 TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPG 808 (842)
T ss_dssp GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSS
T ss_pred ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCC
Confidence 99999999999999999996 799999999999999999999999999988899999999999999669999999
Q ss_pred ---eCCEEEEEechhHHHH
Q psy6612 214 ---RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 214 ---~~G~i~~~~~~~~~~~ 229 (291)
++|++++.|+++++..
T Consensus 809 ~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 809 AGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp SGGGCCSEEEEECHHHHTT
T ss_pred CCCCCCEEEEEcCHHHHHh
Confidence 7999999999887643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=321.15 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=163.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-E-EEECCEecCeEEEEcCCCC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-T-IKLSFRQISDIGYMPQELA 94 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~-I~~~g~~~~~ig~v~q~~~ 94 (291)
+.|++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|..-+.++|+||+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 44667778888885 79999999999999999999999999999999999999 9 9999855467999999984
Q ss_pred ---CCCCCCHHHHHHHhccc-cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH--HhcCCCE----EE
Q psy6612 95 ---LHGELSIRETFRYYGYM-FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVS--LLHNPKL----LI 164 (291)
Q Consensus 95 ---l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra--l~~~p~l----ll 164 (291)
+++.+|+.||+ |+... .+... .+++.++++.+|+..... +.+|||||||||+|||| |+.+|++ ||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~---~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATL---LHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCS---SCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred hcccccccchhhhh-cccccccCcch---HHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 44567999988 54432 12111 123456778888865322 88999999999999999 9999999 99
Q ss_pred Ecc-cCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh------HHhh-hCe-----EEEEe-CCEEEEEechhHHHHH
Q psy6612 165 LDE-PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE------EAKG-AHN-----IGLMR-DDQYIGRLVHHDIVES 230 (291)
Q Consensus 165 lDE-PtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~------~~~~-~d~-----i~~l~-~G~i~~~~~~~~~~~~ 230 (291)
||| ||++||+. +..+.++++++ +.|+|++||+.+ ++.. ||+ +++|+ +|+++ .++++++...
T Consensus 265 LDEpPts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~ 339 (460)
T 2npi_A 265 VDTPSISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSL 339 (460)
T ss_dssp EECCCGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHH
T ss_pred EeCCcccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhh
Confidence 999 99999999 55555555543 789999999987 6655 999 99999 99999 8888766432
Q ss_pred HHHHHHHHH
Q psy6612 231 LVEALEDAL 239 (291)
Q Consensus 231 ~~~~~~~~~ 239 (291)
....+.+.|
T Consensus 340 ~~~~i~~~f 348 (460)
T 2npi_A 340 QRTSIREYF 348 (460)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 223444444
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-35 Score=278.89 Aligned_cols=189 Identities=18% Similarity=0.235 Sum_probs=145.8
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC--------------------------------------CCc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT--------------------------------------LDA 73 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~--------------------------------------p~~ 73 (291)
..+++++||++++| +++|+|||||||||||++|+++.. +..
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 46899999999999 999999999999999999987764 447
Q ss_pred cEEEECCEecCe----------EEEEcCCCCCCCCCCHHHHHHHhccccCC-----------------------------
Q psy6612 74 GTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDM----------------------------- 114 (291)
Q Consensus 74 G~I~~~g~~~~~----------ig~v~q~~~l~~~ltv~enl~~~~~~~~~----------------------------- 114 (291)
|+++++|+++.. +++++|+..++.. +..+...|.-+....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 899999998732 8999999876653 444443332111000
Q ss_pred -C------------------------------hHHHHHHHHHHHHHcCCCCC----------------------------
Q psy6612 115 -T------------------------------DDQIETRSKEILKLLELPPA---------------------------- 135 (291)
Q Consensus 115 -~------------------------------~~~~~~~~~~~l~~~~l~~~---------------------------- 135 (291)
. .......+.+.++.+++...
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0 00012234444555554320
Q ss_pred ---CCCcCc-CChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 ---KKIVGA-LSGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ---~~~~~~-LSgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
.+++.. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|.|||+|||+++.+..||+
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~ 364 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHH 364 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSE
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCe
Confidence 033334 5999999999999999999 9999999999999999999999999997 58999999999988777999
Q ss_pred EEEE----eCCEEEEEec
Q psy6612 210 IGLM----RDDQYIGRLV 223 (291)
Q Consensus 210 i~~l----~~G~i~~~~~ 223 (291)
+++| ++|+++....
T Consensus 365 i~~l~k~~~~G~~~~~~~ 382 (415)
T 4aby_A 365 HYKVEKQVEDGRTVSHVR 382 (415)
T ss_dssp EEEEEEEEETTEEEEEEE
T ss_pred EEEEEEeccCCceEEEEE
Confidence 9999 9999887654
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-33 Score=262.39 Aligned_cols=85 Identities=22% Similarity=0.230 Sum_probs=79.6
Q ss_pred CCCcCcCChhHHHHHHHHHHHh------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 KKIVGALSGGQQRRISFAVSLL------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
++++.+|||||||||+|||||+ .+|++|||||||+|||+.++..+++.|+++++.|.|||+||||++.+..||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4688999999999999999999 7999999999999999999999999999998789999999999998666999
Q ss_pred EEEEeCCEEEE
Q psy6612 210 IGLMRDDQYIG 220 (291)
Q Consensus 210 i~~l~~G~i~~ 220 (291)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-33 Score=236.58 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=107.1
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC-CCCHHHHHHHhccccCCC
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG-ELSIRETFRYYGYMFDMT 115 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~-~ltv~enl~~~~~~~~~~ 115 (291)
|+||++++||+++|+||||||||||+|++.+ |...+++..+ .|+++|++.-.. .-++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~~--~g~~~~~~~~~~~~~~~~~~~---------- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDFC--RGLMSDDENDQTVTGAAFDVL---------- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHHH--HHHHCSSTTCGGGHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHHH--HHHhcCcccchhhHHHHHHHH----------
Confidence 6899999999999999999999999998653 2222222111 256666643110 00111111
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH----------------HHHH
Q psy6612 116 DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI----------------LSQI 179 (291)
Q Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~----------------~~~~ 179 (291)
...... ....+...........|+|||||++||||++.+|++|+|||||++||+. .+..
T Consensus 63 ----~~~~~~-~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 63 ----HYIVSK-RLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp ----HHHHHH-HHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred ----HHHHHH-HHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 111212 2233443321234556999999999999999999999999999999999 6699
Q ss_pred HHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 180 i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
+++.|++++++|.|+|++|||++++..++++
T Consensus 138 l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 138 MKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 9999999876699999999999999876554
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-35 Score=260.75 Aligned_cols=145 Identities=21% Similarity=0.293 Sum_probs=104.4
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC--Ee---c-CeEEEEcCCCCCCCCCC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF--RQ---I-SDIGYMPQELALHGELS 100 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g--~~---~-~~ig~v~q~~~l~~~lt 100 (291)
|+|+++.+|+++ ++||+++|+||||||||||+|+|+|+ +|++|+|.... .+ . +.+||+||++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 346677899996 89999999999999999999999999 99999995310 11 1 4599999986
Q ss_pred HHHHH-HHhc----cccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 101 IRETF-RYYG----YMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 101 v~enl-~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
.||+ .+.. ....... .+++.++++. ++ ||||||+|||||+.+|++|||||||+|
T Consensus 76 -~enl~~~~~~~~~~~~~~~~---~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~lllLDEPts~---- 134 (208)
T 3b85_A 76 -NEKIDPYLRPLHDALRDMVE---PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFVILDEAQNT---- 134 (208)
T ss_dssp -----CTTTHHHHHHHTTTSC---TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEEEECSGGGC----
T ss_pred -HHHHHHHHHHHHHHHHHhcc---HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEEEEeCCccc----
Confidence 3343 2210 1111001 1245555554 43 999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 176 LSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 176 ~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
++..++++|+++ ++|+||| +|||++++..
T Consensus 135 ~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 135 TPAQMKMFLTRL-GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp CHHHHHHHHTTB-CTTCEEE-EEEC------
T ss_pred cHHHHHHHHHHh-cCCCEEE-EECCHHHHhC
Confidence 899999999998 6689999 9999987754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-31 Score=244.07 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=73.7
Q ss_pred CCCCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeE
Q psy6612 135 AKKIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i 210 (291)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..+..+++.|+++. +|.|||++||+++....||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKIVMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTTGGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHHHHhhCceE
Confidence 45678999999999999999997 5889999999999999999999999999985 578999999997655669986
Q ss_pred --EEEeCCEE
Q psy6612 211 --GLMRDDQY 218 (291)
Q Consensus 211 --~~l~~G~i 218 (291)
++|.+|.-
T Consensus 292 ~~v~~~~g~s 301 (322)
T 1e69_A 292 HGVTMVNGVS 301 (322)
T ss_dssp EEEEESSSCE
T ss_pred EEEEEeCCEE
Confidence 88888854
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-34 Score=273.08 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=143.2
Q ss_pred EeeEeeeeEEEeCCc--------------------EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcC
Q psy6612 32 HVVLKGLNLNVPENK--------------------IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQ 91 (291)
Q Consensus 32 ~~~L~~vsl~i~~Ge--------------------i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q 91 (291)
+.+|+++||++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+..+.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999999999977644589999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh--HHHHHHHHHHHhc----------C
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG--QQRRISFAVSLLH----------N 159 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG--qkQrv~iAral~~----------~ 159 (291)
++ .++.+|++||+.+.. . +.++.++++.+++...+..+. ||+| |+||++||+||++ +
T Consensus 116 ~~-~~~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp CS-SCTTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cc-ccCCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 85 567789988865431 1 124677889998865444444 9999 9999999999999 9
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhH-----hCC----cEEEEEccCHhH--Hhh-hCeEE-EEeCC
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMA-----LNG----KTIIITTHYIEE--AKG-AHNIG-LMRDD 216 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~-----~~g----~tii~~tHd~~~--~~~-~d~i~-~l~~G 216 (291)
|++++|||||+|||+.++.++++.|+++. +.| .+|+++||+++. +.. ||++. .|..|
T Consensus 185 pdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 185 VDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 99999999999999999999999999984 322 578899999987 765 88774 45444
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-33 Score=244.76 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=121.7
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-----cCeEEEEcCCCCCCCCCCHHHHH
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-----ISDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-----~~~ig~v~q~~~l~~~ltv~enl 105 (291)
..++++| .++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+ .+.++|+||++.+|+.+|+.+++
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 3567888 7999999999999999999999999999986333222221211 13589999998888877887776
Q ss_pred HHh----c--cccCCChHHHHHHHHHH------HHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC
Q psy6612 106 RYY----G--YMFDMTDDQIETRSKEI------LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 106 ~~~----~--~~~~~~~~~~~~~~~~~------l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL 172 (291)
... . ..++.+..+.++++.+. ++.+|+.. .++++.+|| ||+.+|++++|||||+++
T Consensus 86 ~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 86 LEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp EEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred eeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 422 1 23344444555556555 55555543 466778888 999999999999999998
Q ss_pred ----CHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeC
Q psy6612 173 ----DPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRD 215 (291)
Q Consensus 173 ----D~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~ 215 (291)
|+..+..+++.+++++ +.|.|+|++|||++++.. ||++++|..
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 7889999999999997 458999999999999976 999999853
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-29 Score=216.90 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=99.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe---------cCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ---------ISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~---------~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
+++|+||||||||||+|+|+|++. |.++|.+ -+.+||++|++. +.+++ .... ....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~--~~~~-~~~~- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI--FSSK-FFTS- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE--EEET-TCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH--HHhh-cCCc-
Confidence 689999999999999999999985 3333321 145899999762 22222 1111 1000
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH-----HhcCCCEEEEcc--cCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVS-----LLHNPKLLILDE--PTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra-----l~~~p~llllDE--PtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
-...++++.+||||||||++|||| ++.+|+++|||| ||++||+..+..+.+.+.+ .
T Consensus 67 --------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~ 129 (178)
T 1ye8_A 67 --------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---P 129 (178)
T ss_dssp --------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---T
T ss_pred --------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---C
Confidence 012567889999999999999996 999999999999 9999999999999888876 4
Q ss_pred CcEEEEEc---cCHhHHhh-hCe
Q psy6612 191 GKTIIITT---HYIEEAKG-AHN 209 (291)
Q Consensus 191 g~tii~~t---Hd~~~~~~-~d~ 209 (291)
+.|+|++| ||.+++.. |++
T Consensus 130 ~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 130 NVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp TSEEEEECCSSCCSHHHHHHHTC
T ss_pred CCeEEEEEccCCCchHHHHHHhc
Confidence 67788888 58888876 887
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-33 Score=259.06 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=131.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
+|+++++++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.+|..
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I---------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV---------LSFANHKSHFWLA 167 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE---------ECGGGTTSGGGGG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE---------EEEecCccccccc
Confidence 467788999997 77999999999999999999999999999999999998 8988 4578899888875
Q ss_pred CCHHH-HHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHH
Q psy6612 99 LSIRE-TFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176 (291)
Q Consensus 99 ltv~e-nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~ 176 (291)
|+++ |+.+... .. . .+.+.++.+ +.. .+ ...|||||||| ||||+.+|++|| ||+||+.+
T Consensus 168 -ti~~~ni~~~~~---~~-~----~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 168 -SLADTRAALVDD---AT-H----ACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp -GGTTCSCEEEEE---EC-H----HHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred -cHHHHhhccCcc---cc-H----HHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 7876 7765321 11 1 344555553 433 33 67899999999 999999999999 99999999
Q ss_pred HHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHH
Q psy6612 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 177 ~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+..+.. .||+++.+..||+| +|++|+++..|+++++
T Consensus 229 ~~~i~~--------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 229 EDRYLY--------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp CGGGGG--------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred HHHHHH--------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 988852 29999887779999 9999999999998877
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-30 Score=235.24 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=136.1
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCC
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQEL 93 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~ 93 (291)
++...+++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++ ..++|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 3343345679999999999999999999999999999999999999999998764 1489999999
Q ss_pred C-CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccC
Q psy6612 94 A-LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPT 169 (291)
Q Consensus 94 ~-l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPt 169 (291)
. +++.+|++||+.+... .+.. ..+++.+|+.+ .++++.+|| |||++||||++.+|+ +|+|| ||
T Consensus 164 ~~~~~~~~v~e~l~~~~~-~~~d--------~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pt 230 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GN 230 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH-TTCS--------EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GG
T ss_pred CccCHHHHHHHHHHHHHH-cCCc--------chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CC
Confidence 8 8888999999986432 1110 12456677755 467889999 999999999999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHhH-hCCcEEEEEcc---------CHhHHhh-hCeEEEEeCCEE
Q psy6612 170 VGLDPILSQIIWDRLKEMA-LNGKTIIITTH---------YIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~-~~g~tii~~tH---------d~~~~~~-~d~i~~l~~G~i 218 (291)
+|||+..+ ++++. +.|.|+|++|| .++.+.. ...|.++..|+.
T Consensus 231 sglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 231 TGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99999865 34555 35899999999 4555544 678999999854
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-30 Score=251.94 Aligned_cols=183 Identities=15% Similarity=0.111 Sum_probs=148.5
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE---ec-----------
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR---QI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~---~~----------- 83 (291)
+++++++++.|+ +..+|+++ |++.+|++++|+||||||||||+++|+|+.+|+.|.|.++|+ ++
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~ 209 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPD 209 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcccc
Confidence 456678999997 67899999 999999999999999999999999999999999999999997 32
Q ss_pred ---CeEEEEcCC-CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 ---SDIGYMPQE-LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 ---~~ig~v~q~-~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.++|++|+ ..+++++|+.+|+.+.+.++... .-.....-..+..||+|| ||++|| +.+
T Consensus 210 ~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~-------------~~~v~~~ld~l~~lS~g~-qrvslA---l~~ 272 (438)
T 2dpy_A 210 GRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDR-------------GQHVLLIMDSLTRYAMAQ-REIALA---IGE 272 (438)
T ss_dssp HHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTT-------------TCEEEEEEECHHHHHHHH-HHHHHH---TTC
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhC-------------CCCHHHHHHhHHHHHHHH-HHHHHH---hCC
Confidence 358999995 55677788999887654322100 000001112367899999 999999 889
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh---C-Cc-----EEEEEccCHhHHhhhCeEEEEeCCEEEEEechhH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL---N-GK-----TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~---~-g~-----tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++ |+|||+..+..+.+++.++.+ + |+ ||+++|||++ ...||++++|.+|+++.++.+.+
T Consensus 273 p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 273 PPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAE 341 (438)
T ss_dssp CCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHH
T ss_pred Ccc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHH
Confidence 988 999999999999999999865 3 64 9999999999 44599999999999998776543
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-31 Score=245.13 Aligned_cols=182 Identities=12% Similarity=0.016 Sum_probs=140.1
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEE-----------------------EeCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLN-----------------------VPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~-----------------------i~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.++.+|+++++++.|+ ++++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 39 ~~~~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CTTCCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3456788899999994 677777765 899999999999999999999999999999
Q ss_pred CccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHH
Q psy6612 72 DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRIS 151 (291)
Q Consensus 72 ~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~ 151 (291)
+.|. .+++|++|++.+++. |+.||+.+.. .++.+.....+.+.++++.++-...+.++.+|||||+||++
T Consensus 117 ~~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~ 186 (312)
T 3aez_A 117 WDHH--------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIP 186 (312)
T ss_dssp STTC--------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEE
T ss_pred cCCC--------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhh
Confidence 8664 469999999998888 9999986532 12333333345677788888722245778899999999999
Q ss_pred HHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH-hh-hCeEEEEeCC
Q psy6612 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-KG-AHNIGLMRDD 216 (291)
Q Consensus 152 iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~-~~-~d~i~~l~~G 216 (291)
+|+|++.+|++||+|||++.+|+.. ..+.+.--..|+++|+.+.. .+ ++|.+.+.++
T Consensus 187 ~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 187 GAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred hHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998621 11222212457788888776 34 7777666664
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-31 Score=231.93 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=100.4
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----------CeEEEEcCCCCCCCCCCH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------SDIGYMPQELALHGELSI 101 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------~~ig~v~q~~~l~~~ltv 101 (291)
+..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++ ..++|+||++.+|+.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999998 6 99999 6543 358899998876654321
Q ss_pred -HHHHH---HhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHH-----HHHHhcCCCEEEEcccCCCC
Q psy6612 102 -RETFR---YYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISF-----AVSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 102 -~enl~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~i-----Aral~~~p~llllDEPtsgL 172 (291)
.+++. +....++.+. ..++++++...+...+ .+|||||+||++| ||+|+.+|++++|||||+++
T Consensus 86 ~~~~l~~~~~~~~~~g~~~----~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~ 158 (218)
T 1z6g_A 86 NEDFLEYDNYANNFYGTLK----SEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTR 158 (218)
T ss_dssp TTCEEEEEEETTEEEEEEH----HHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHT
T ss_pred ccchhhhhhcccccCCCcH----HHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhc
Confidence 11211 1112222222 2355555543321122 5789999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhHh
Q psy6612 173 DPILSQIIWDRLKEMAL 189 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~ 189 (291)
|..+...+.+.+.++.+
T Consensus 159 d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 159 NTENQEQIQKRMEQLNI 175 (218)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999888753
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-28 Score=229.07 Aligned_cols=164 Identities=15% Similarity=0.148 Sum_probs=134.9
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCCC-CCCCC
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQELA-LHGEL 99 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~~-l~~~l 99 (291)
..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++ ..++|++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568999999999999999999999999999999999999999998764 14899999998 88888
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCCCHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPIL 176 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgLD~~~ 176 (291)
|+++|+.+... .+.. ..+++.+|+.+ .++++.+|| |||++||||++.+|+ +|+|| ||+|||+.+
T Consensus 228 tv~e~l~~~~~-~~~d--------~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 228 VLSKAVKRGKE-EGYD--------VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHHH-TTCS--------EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred hHHHHHHHHHh-CCCH--------HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 99999986532 1111 12456677755 467888999 999999999999999 99999 999999986
Q ss_pred HHHHHHHHHHhH-hCCcEEEEEcc---------CHhHHhh-hCeEEEEeCCEE
Q psy6612 177 SQIIWDRLKEMA-LNGKTIIITTH---------YIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 177 ~~~i~~~l~~l~-~~g~tii~~tH---------d~~~~~~-~d~i~~l~~G~i 218 (291)
+. +++. +.|.|+|++|| .++.+.. +..|.++..|+.
T Consensus 295 ~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 295 QA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 53 4454 35899999999 3455544 678999988854
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-29 Score=225.95 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=98.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
.++|+||||||||||+|+|+|+..|++|+|.++|+++ +.++|++|++.+++.+||.||+.|+....+.. ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~---~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN---CW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT---CS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH---HH
Confidence 4899999999999999999999999999999999865 46999999999999999999998765433211 11
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccC
Q psy6612 121 TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY 200 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd 200 (291)
+.+.+++.. ...+..+.+||||||||+++|||++. ++++|||++|||+.. .++++.+.+. .+||++.|.
T Consensus 81 ~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~-~~vI~Vi~K 149 (270)
T 3sop_A 81 EPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV-VNIIPVIAK 149 (270)
T ss_dssp HHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-SEEEEEETT
T ss_pred HHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-CcEEEEEec
Confidence 223333331 11356788999999999999999886 999999999999987 4566666655 888888887
Q ss_pred HhHH
Q psy6612 201 IEEA 204 (291)
Q Consensus 201 ~~~~ 204 (291)
.+.+
T Consensus 150 ~D~l 153 (270)
T 3sop_A 150 ADTM 153 (270)
T ss_dssp GGGS
T ss_pred cccC
Confidence 6544
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-27 Score=248.26 Aligned_cols=165 Identities=17% Similarity=0.202 Sum_probs=127.3
Q ss_pred cceEEEEe-----EEEEE-CCEeeEeeeeEEEeC-------CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 17 KHSVAVTS-----AYKKI-GNHVVLKGLNLNVPE-------NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 17 ~~~l~~~~-----l~~~~-~~~~~L~~vsl~i~~-------Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
+.+|++++ +++.| ++..+++|+||++++ |++++|+||||||||||||+| |++.+ .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-----------~ 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-----------M 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------H
Confidence 45799999 99999 778899999999987 999999999999999999999 99875 2
Q ss_pred CeEE-EEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 SDIG-YMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 ~~ig-~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
.++| ||||++. .+|+.|++. . .+|+.+ ..+..+.+|++|++ +++|++++.+|+
T Consensus 816 aqiG~~Vpq~~~---~l~v~d~I~--~-------------------rig~~d~~~~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 816 AQMGCYVPAEVC---RLTPIDRVF--T-------------------RLGASDRIMSGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp HTTTCCEESSEE---EECCCSBEE--E-------------------ECC---------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred hheeEEeccCcC---CCCHHHHHH--H-------------------HcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCc
Confidence 3466 9999863 345555541 1 123222 23445778888886 999999999999
Q ss_pred EEEEcccCCCCCHHHH-HHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEE
Q psy6612 162 LLILDEPTVGLDPILS-QIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 162 llllDEPtsgLD~~~~-~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~ 219 (291)
++||||||+|+|+... ..++++|+.++++ |.++|++||+++++.. ||++.++ +|++.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 9999999999999884 5678999999866 8999999999999976 8988876 57776
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=206.44 Aligned_cols=79 Identities=25% Similarity=0.310 Sum_probs=71.3
Q ss_pred CCCcCcCChhHHH------HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 136 KKIVGALSGGQQR------RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 136 ~~~~~~LSgGqkQ------rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
++++.+||||||| |+++|+||+.+|++|||||||+|||+..+..+++.|+++.++|.|||++|||.+....||+
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~ 322 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 322 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCE
Confidence 5678999999999 6778888889999999999999999999999999999998778899999999765556999
Q ss_pred EEEEe
Q psy6612 210 IGLMR 214 (291)
Q Consensus 210 i~~l~ 214 (291)
+++|+
T Consensus 323 ~~~l~ 327 (339)
T 3qkt_A 323 VIRIS 327 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99885
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-26 Score=235.36 Aligned_cols=159 Identities=25% Similarity=0.328 Sum_probs=131.6
Q ss_pred HHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH---------HHHHHHHHHHHHc
Q psy6612 60 TLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDD---------QIETRSKEILKLL 130 (291)
Q Consensus 60 TLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~---------~~~~~~~~~l~~~ 130 (291)
|...|..+.+.|..|+|+++|+++.. +..+++.+++.|.... ..+.. ...++..+.+..+
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~----------~~~~~v~~~l~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~L~~v 451 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE----------FTELSISEELEFLKNL-NLTEREREIVGELLKEIEKRLEFLVDV 451 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH----------HHHSBHHHHHHHHHSC-CCCTTTTTTHHHHHHHHHHHHHHHHTT
T ss_pred cchhcccccCChHhcCcEECCccHHH----------hhhCCHHHHHHHHHhc-cCcHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 45567778889999999999998743 3346888888764332 11110 1112344678889
Q ss_pred CCCC--CCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh
Q psy6612 131 ELPP--AKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 131 ~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~ 206 (291)
|+.. .++++.+|||||||||+|||||+++|+ +|||||||+|||+..+..++++|++++++|.|||+||||++.+..
T Consensus 452 gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~ 531 (916)
T 3pih_A 452 GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN 531 (916)
T ss_dssp TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 9964 589999999999999999999999887 999999999999999999999999998789999999999999877
Q ss_pred hCeEEEE------eCCEEEEEechhHHHH
Q psy6612 207 AHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 207 ~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
||++++| ++|+++++|+++++..
T Consensus 532 aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 532 ADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9999999 8999999999998765
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-25 Score=208.73 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCCcC-cCChhHHHHHHHHHHHh---------cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHh
Q psy6612 136 KKIVG-ALSGGQQRRISFAVSLL---------HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAK 205 (291)
Q Consensus 136 ~~~~~-~LSgGqkQrv~iAral~---------~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~ 205 (291)
++++. .||+|||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 34666 79999999999999999 8999999999999999999999999999874 699999994 44
Q ss_pred hhCeEEEEeCCEEEEEechhHH
Q psy6612 206 GAHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 206 ~~d~i~~l~~G~i~~~~~~~~~ 227 (291)
.||++++|++|+++..++++++
T Consensus 333 ~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp TCSEEEEEETTEEEECCCTTTS
T ss_pred cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999998887654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-27 Score=219.78 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=105.2
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
+++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+... + +.. .+++. +.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~---------~-~~~--~~~i~----~~- 222 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV---------F-KHH--KNYTQ----LF- 222 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC---------C-SSC--SSEEE----EE-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc---------c-ccc--hhEEE----EE-
Confidence 7899999999999999999999999999999999999999999998853100 0 000 00000 00
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcE
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 193 (291)
.. |||+||++|||||.++|++|++||||+ .++++.|+.+...+.|
T Consensus 223 --------------------------~g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~g~~t 267 (330)
T 2pt7_A 223 --------------------------FG--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCSGHKG 267 (330)
T ss_dssp --------------------------CB--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHTTCCC
T ss_pred --------------------------eC--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhcCCCE
Confidence 00 899999999999999999999999998 2456777777644458
Q ss_pred EEEEccCHhHHhhhCeEEEEeCCE
Q psy6612 194 IIITTHYIEEAKGAHNIGLMRDDQ 217 (291)
Q Consensus 194 ii~~tHd~~~~~~~d~i~~l~~G~ 217 (291)
+|++||+.+....|||+++|.+|.
T Consensus 268 vi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 268 TLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEcccHHHHHhhhheehhcCC
Confidence 999999999556699999998873
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-25 Score=216.87 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCcCcC-ChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 137 KIVGAL-SGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 137 ~~~~~L-SgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
+++.+| ||||||||+|||||+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||+++.+..||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999999987 89999999999988779999999
Q ss_pred eCC
Q psy6612 214 RDD 216 (291)
Q Consensus 214 ~~G 216 (291)
.++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-27 Score=222.54 Aligned_cols=182 Identities=15% Similarity=0.123 Sum_probs=135.3
Q ss_pred eEEEEeEEEEEC-CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------------
Q psy6612 19 SVAVTSAYKKIG-NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~-~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------- 83 (291)
+++++++++.|+ +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|++.
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 455677899997 77899999 99999999999999999999999999999999999999988652
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcC
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHN 159 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~ 159 (291)
+.+.+++|.. .+..+.+..... ...+.+.+...+-.- .-..+.+||+|| ||+++| +.+
T Consensus 124 ~~~~v~~~~~~~-----~~~~~r~~~~~~---------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~ 185 (347)
T 2obl_A 124 LSKCVLVVTTSD-----RPALERMKAAFT---------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGE 185 (347)
T ss_dssp HTTEEEEEECTT-----SCHHHHHHHHHH---------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTC
T ss_pred hhceEEEEECCC-----CCHHHHHHHHHH---------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCC
Confidence 1244454432 122222211000 000111111111110 114678999999 899999 688
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHh--CCc-----EEEEEccCHhHHhhhCeEEEEeCCEEEEEechhH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMAL--NGK-----TIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHD 226 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~g~-----tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 226 (291)
|++ |+||||.....+.+++.++.+ .|. ||+++|||++ ...||++++|.+|+++.+++..+
T Consensus 186 p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 186 PDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp CCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred CCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 888 999999999999999999974 577 9999999999 33499999999999998876544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-28 Score=241.77 Aligned_cols=170 Identities=17% Similarity=0.192 Sum_probs=124.5
Q ss_pred EEEEeEEEEECCEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHH--HHcCCCCCccEEEECCEec--------CeEEE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNC--IVGRNTLDAGTIKLSFRQI--------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~--i~gl~~p~~G~I~~~g~~~--------~~ig~ 88 (291)
++.+++.+..++.++|+++|| .+++|++++|+||||||||||+++ ++|+.+|++|.|+++|++. +.+||
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGW 92 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTC
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCC
Confidence 334455555667889999999 999999999999999999999999 7899999999999999763 35788
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
++|++...+ |+.+ ..... .. ...++++.+++.. .++.+.+||+| +|+++++||
T Consensus 93 ~~q~~~~~~------~l~~-~~~~~-~~-----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe 146 (525)
T 1tf7_A 93 DLAKLVDEG------KLFI-LDASP-DP-----EGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDS 146 (525)
T ss_dssp CHHHHHHTT------SEEE-EECCC-CS-----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEEC
T ss_pred ChHHhhccC------cEEE-EecCc-cc-----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECC
Confidence 888754211 1111 00000 00 0011122222221 23444555555 588999999
Q ss_pred cCC-----CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH---------hh-hCeEEEEeC
Q psy6612 168 PTV-----GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA---------KG-AHNIGLMRD 215 (291)
Q Consensus 168 Pts-----gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~---------~~-~d~i~~l~~ 215 (291)
||+ +||+..++.++++++++++.|+|||++||+++++ .. ||++++|++
T Consensus 147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 998 4699999999999999987799999999999984 55 999999998
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-26 Score=209.46 Aligned_cols=177 Identities=12% Similarity=0.159 Sum_probs=118.8
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEEECCEec------CeEEEEcCCCCCCCCCCHHHH
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIKLSFRQI------SDIGYMPQELALHGELSIRET 104 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~~~g~~~------~~ig~v~q~~~l~~~ltv~en 104 (291)
.++|+++++.+++|++++|+||||||||||+++|+|...|++| .|.+.+... .++.+++++.. ++..++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 4589999999999999999999999999999999999999878 665433221 11222222221 112222
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhH-HHHHHHHHHHhcCCCEEEEcccCC---C---CCH-HH
Q psy6612 105 FRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ-QRRISFAVSLLHNPKLLILDEPTV---G---LDP-IL 176 (291)
Q Consensus 105 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq-kQrv~iAral~~~p~llllDEPts---g---LD~-~~ 176 (291)
+.... .+.++..+.+.++++..++. ....+.++|.++ +||+. |+++.++|+++|+||||+ + +|. ..
T Consensus 98 l~~~~----~~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 98 LKREI----IENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHH----HHHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred cccCC----CCHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 22110 11222333444444333331 223346788888 67777 999999999999999999 5 565 67
Q ss_pred HHHHHHHHHHhHh-CCcEEEEEccCH--h--------------------HHhh-hCeEEEEeCCEE
Q psy6612 177 SQIIWDRLKEMAL-NGKTIIITTHYI--E--------------------EAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 177 ~~~i~~~l~~l~~-~g~tii~~tHd~--~--------------------~~~~-~d~i~~l~~G~i 218 (291)
...+.+.|+++++ .|.|||++||+. + .+.. ||+|++|++|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 7889999999975 489999999995 4 5655 999999998864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-25 Score=216.65 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=122.3
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
+..+++|++++|+||||||||||+++++|...|+ |+ +-+.|.+|++. .++.++.. .++...
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~--------~vi~~~~ee~~----~~l~~~~~----~~g~~~-- 335 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE--------RAILFAYEESR----AQLLRNAY----SWGMDF-- 335 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC--------CEEEEESSSCH----HHHHHHHH----TTSCCH--
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC--------CEEEEEEeCCH----HHHHHHHH----HcCCCH--
Confidence 4589999999999999999999999999998874 53 12556677642 13333332 123221
Q ss_pred HHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH-----HHHHHHHHHHHhHhCCc
Q psy6612 119 IETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI-----LSQIIWDRLKEMALNGK 192 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~-----~~~~i~~~l~~l~~~g~ 192 (291)
.+ +...|+.. .+.++.+||+||+||+++|+++..+|+++|+| ||++||+. .+..+.++++.+++.|.
T Consensus 336 -----~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 336 -----EE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp -----HH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----HH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 12 22345533 57788999999999999999999999999999 99999999 99999999999988899
Q ss_pred EEEEEccCH----------hHHhh-hCeEEEEeCCE
Q psy6612 193 TIIITTHYI----------EEAKG-AHNIGLMRDDQ 217 (291)
Q Consensus 193 tii~~tHd~----------~~~~~-~d~i~~l~~G~ 217 (291)
|||++||+. ..+.. ||++++|++|+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999998 66765 99999999875
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-24 Score=223.35 Aligned_cols=148 Identities=21% Similarity=0.346 Sum_probs=123.4
Q ss_pred CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh----------HHHHHHHHHHHHHcCCCC--CCC
Q psy6612 70 TLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD----------DQIETRSKEILKLLELPP--AKK 137 (291)
Q Consensus 70 ~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~----------~~~~~~~~~~l~~~~l~~--~~~ 137 (291)
.|....|+++|+++.+ +..+||.|++.|+..+ ..+. +++.+++ +.+..+||.. .++
T Consensus 433 ~~~~l~v~~~g~~i~q----------~~~ltV~e~~~f~e~l-~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR 500 (972)
T 2r6f_A 433 KKESLAVLVGGKHIGE----------VTAMSVTEALAFFDGL-ELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR 500 (972)
T ss_dssp CTTTTTEESSSCBHHH----------HHTSBHHHHHHHHHHC-CCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS
T ss_pred CHHHheeEECCCcHHH----------HhhCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC
Confidence 4455667777766543 2348999999986543 3444 2344555 4588999974 589
Q ss_pred CcCcCChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE--
Q psy6612 138 IVGALSGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM-- 213 (291)
Q Consensus 138 ~~~~LSgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l-- 213 (291)
++.+|||||||||+||++|+.+| ++|||||||+||||.....+++.|++|++.|.|||+||||++++..||+|++|
T Consensus 501 ~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp 580 (972)
T 2r6f_A 501 SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGP 580 (972)
T ss_dssp BGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECS
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCC
Confidence 99999999999999999999985 99999999999999999999999999988899999999999998779999999
Q ss_pred ----eCCEEEEEechhHHHH
Q psy6612 214 ----RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 214 ----~~G~i~~~~~~~~~~~ 229 (291)
++|+++++|+++++..
T Consensus 581 gaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 581 GAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp SSGGGCCSEEEEECTTTTTT
T ss_pred CccCCCCEEEEecCHHHHHh
Confidence 7999999999987754
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-26 Score=202.56 Aligned_cols=176 Identities=12% Similarity=0.127 Sum_probs=113.5
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
-+++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..-+.++|++|+. +++.+|+.+++.+.
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-~~~~~i~~v~~d~-~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-QRQRKVVILSQDR-FYKVLTAEQKAKAL 82 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-GGGCSEEEEEGGG-GBCCCCHHHHHHHH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-ccCCceEEEeCCc-CccccCHhHhhhhh
Confidence 46778999999999999999999999999999999999976 555444 1125699999995 77789999998765
Q ss_pred ccccCCC--hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 109 GYMFDMT--DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 109 ~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
...+... .....+.+.+.++.+. ...++++..||+||+||+++ ++++.+|+++|+|||....|.. +.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~ 152 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRD 152 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHT
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHH
Confidence 4433322 1111233444455431 23567889999999999988 6889999999999999888864 222
Q ss_pred hHhCCcEEEEEccCHhHH-hh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 187 MALNGKTIIITTHYIEEA-KG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 187 l~~~g~tii~~tHd~~~~-~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+ .+.+|+++||+...+ .. ++++ ++|+ +.+++.+.
T Consensus 153 ~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 153 M--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp T--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred h--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2 378999999985555 44 4444 6663 45555443
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-25 Score=229.16 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=121.0
Q ss_pred Ccccccc-cceEEEEeEEEEE-----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHH--------HcCCCCCccE
Q psy6612 10 DPEIIEV-KHSVAVTSAYKKI-----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCI--------VGRNTLDAGT 75 (291)
Q Consensus 10 ~~~~~~~-~~~l~~~~l~~~~-----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i--------~gl~~p~~G~ 75 (291)
+|.+.+- ...+.+++....+ +++.+++|+||++++|++++|+||||||||||||++ +|...|.++.
T Consensus 621 rP~~~~~~~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 621 RPAILEKGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CCEEECTTSCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred CCeeccCCCcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 4544331 3456666655433 245789999999999999999999999999999999 6655554332
Q ss_pred EEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH
Q psy6612 76 IKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVS 155 (291)
Q Consensus 76 I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra 155 (291)
. ++.+ . +++..+|+. +.....+|+||+++..+|++
T Consensus 701 ~---------~~~~-------d---------------------------~i~~~ig~~--d~l~~~lStf~~e~~~~a~i 735 (934)
T 3thx_A 701 E---------VSIV-------D---------------------------CILARVGAG--DSQLKGVSTFMAEMLETASI 735 (934)
T ss_dssp E---------EECC-------S---------------------------EEEEECC-----------CHHHHHHHHHHHH
T ss_pred c---------chHH-------H---------------------------HHHHhcCch--hhHHHhHhhhHHHHHHHHHH
Confidence 1 1110 0 011122221 22344578888888888888
Q ss_pred H--hcCCCEEEEcccCCCCCHHHHHHH-HHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechh
Q psy6612 156 L--LHNPKLLILDEPTVGLDPILSQII-WDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHH 225 (291)
Q Consensus 156 l--~~~p~llllDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~ 225 (291)
+ +.+|+++||||||+|+|+.....+ +.++..+++ .|+|+|++||+.+....||++..+.+|++...+..+
T Consensus 736 l~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 736 LRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 8 999999999999999999998888 677788875 489999999998877779999999999987665443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-24 Score=220.54 Aligned_cols=166 Identities=16% Similarity=0.244 Sum_probs=133.6
Q ss_pred CCCccHHHHHHHHHcC---------CCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCC---------
Q psy6612 53 PSGCGKTTLLNCIVGR---------NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDM--------- 114 (291)
Q Consensus 53 pNGaGKSTLl~~i~gl---------~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~--------- 114 (291)
.+..||+|+.+.+... +.|.+|+|.++|+++..+ ..+++.+.+.|.......
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~----------~~~~v~e~~~~~~~~~~~~~~~~~~~~ 339 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITEL----------SRLPLARVSELLRPYAEEREPGHAERV 339 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHH----------HHSBHHHHHHHHHHHHTTCSSCSTTSS
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHH----------hhcCHHHHHHHHHhhhhhhhhcccchh
Confidence 4567999999988774 345688999999887431 114555555544332110
Q ss_pred --C----------hHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHHhcCC--CEEEEcccCCCCCHHHHH
Q psy6612 115 --T----------DDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNP--KLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 115 --~----------~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p--~llllDEPtsgLD~~~~~ 178 (291)
. ..++.++++ .+..+|+.+ .++++.+|||||||||+||++|+.+| ++|||||||++||+....
T Consensus 340 ~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 340 KNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 0 123455555 678899975 58999999999999999999999999 599999999999999999
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE------eCCEEEEEechhHHHH
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM------RDDQYIGRLVHHDIVE 229 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l------~~G~i~~~~~~~~~~~ 229 (291)
.++++|++|++.|.|||+||||++.+..||+|++| ++|++++.|+++++..
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 99999999998899999999999987779999999 7999999999988754
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=196.75 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=70.3
Q ss_pred CCcCcCChhHHHHHHHHHHHh----cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEE
Q psy6612 137 KIVGALSGGQQRRISFAVSLL----HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL 212 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAral~----~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~ 212 (291)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+++.++|++||+...+..||+++.
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~ 408 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVG 408 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEE
Confidence 345569999999999999999 5799999999999999999999999999987557899999999877667999998
Q ss_pred Ee
Q psy6612 213 MR 214 (291)
Q Consensus 213 l~ 214 (291)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-25 Score=207.33 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=89.1
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC-CCCCccEEEECCEec------CeEEEEcCCCCC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQI------SDIGYMPQELAL 95 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~------~~ig~v~q~~~l 95 (291)
.|++++|+++.++++++|+| +|+||||||||||+++|+|. ..|++| +.++|.++ ..+++++|...+
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 47899999999999999998 99999999999999999998 889999 87766543 357899999888
Q ss_pred CCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC-CCH
Q psy6612 96 HGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG-LDP 174 (291)
Q Consensus 96 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg-LD~ 174 (291)
+..+|++|+..++..... .+.....+..+.+ ..++++.++|||||||+.+|||++ ++++||||++ ||+
T Consensus 75 ~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~ 143 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDAINC--RDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP 143 (301)
T ss_dssp CEEEEEEEEC-------------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred ccCcchhhhhhhhhhcCc--HHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence 888899988765432110 0000111111111 135778899999999999999986 9999999985 999
Q ss_pred HHHHHHHHHHHHhHhC-CcEEEEEccCHh
Q psy6612 175 ILSQIIWDRLKEMALN-GKTIIITTHYIE 202 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~-g~tii~~tHd~~ 202 (291)
... ++++++.+. +.++|+++||+.
T Consensus 144 ~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 144 LDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 873 566666543 789999999974
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-24 Score=221.61 Aligned_cols=147 Identities=17% Similarity=0.213 Sum_probs=112.9
Q ss_pred cceEEEEeEEEEE---CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEecCeEEEEcCC
Q psy6612 17 KHSVAVTSAYKKI---GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISDIGYMPQE 92 (291)
Q Consensus 17 ~~~l~~~~l~~~~---~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~ig~v~q~ 92 (291)
+..+++++..... ++..+++|+||+ |++++|+||||||||||||+|+|+.. ++.|.+.-. ....+++++|
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa--~~~~i~~v~~- 621 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPA--EEAHLPLFDG- 621 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS--SEEEECCCSE-
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeeh--hccceeeHHH-
Confidence 5667787775444 456789999999 99999999999999999999999874 677865311 1134666665
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--hcCCCEEEEccc--
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--LHNPKLLILDEP-- 168 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~~~p~llllDEP-- 168 (291)
+++.+++.||+.. .+|+||+|++.+|+++ +.+|+++|||||
T Consensus 622 --i~~~~~~~d~l~~---------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgr 666 (765)
T 1ewq_A 622 --IYTRIGASDDLAG---------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGR 666 (765)
T ss_dssp --EEEECCC---------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTT
T ss_pred --hhccCCHHHHHHh---------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 4455566555421 3689999999999999 999999999999
Q ss_pred -CCCCCHHHH-HHHHHHHHHhHhCCcEEEEEccCHhHHhhh
Q psy6612 169 -TVGLDPILS-QIIWDRLKEMALNGKTIIITTHYIEEAKGA 207 (291)
Q Consensus 169 -tsgLD~~~~-~~i~~~l~~l~~~g~tii~~tHd~~~~~~~ 207 (291)
|++||+.+. ..+++.|.+ .|.|+|++||+.++...|
T Consensus 667 GTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 667 GTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred CCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 999999876 467777766 478999999999887544
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-24 Score=220.02 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=110.7
Q ss_pred CcccccccceEEEEeEEEEE-------CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCE
Q psy6612 10 DPEIIEVKHSVAVTSAYKKI-------GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFR 81 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~-------~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~ 81 (291)
+|.+.+ +..+.+++..... +++.+++|+||++++|++++|+||||||||||||+++++.-. ..|
T Consensus 632 ~P~~~~-~~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g------- 703 (918)
T 3thx_B 632 RPTVQE-ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG------- 703 (918)
T ss_dssp CCEEES-SCEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT-------
T ss_pred CCcccC-CCcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC-------
Confidence 554443 3456666655433 346789999999999999999999999999999999864211 011
Q ss_pred ecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 82 QISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 82 ~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
+++|+..... .+ +.+++..+++.+ ..+..+.+|+||+|++.|+++ +.+|
T Consensus 704 -----~~vpa~~~~i---~~---------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p 753 (918)
T 3thx_B 704 -----SYVPAEEATI---GI---------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQ 753 (918)
T ss_dssp -----CCBSSSEEEE---EC---------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTT
T ss_pred -----ccccchhhhh---hH---------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCC
Confidence 0111110000 00 001122233322 345678899999999999999 8999
Q ss_pred CEEEEcccCCCCCHHHHHHHH-HHHHHhHh-CCcEEEEEccCHhHHhhhCe
Q psy6612 161 KLLILDEPTVGLDPILSQIIW-DRLKEMAL-NGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~-~~l~~l~~-~g~tii~~tHd~~~~~~~d~ 209 (291)
+++||||||+|||+.....+. .++..+++ .|.|+|++||+++.+..||+
T Consensus 754 ~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 754 SLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999999999999999887 77777864 58999999999988765554
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-24 Score=193.37 Aligned_cols=131 Identities=15% Similarity=0.131 Sum_probs=100.3
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++ +|++|+..- + .
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i---~~~~~~~~~-----------~---v 75 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI---EYVFKHKKS-----------I---V 75 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC---CSCCCCSSS-----------E---E
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc---eeecCCcce-----------e---e
Confidence 5899999 9999999999999999999999999999998 99999988653 455554210 0 0
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g 191 (291)
.+ ..++++. ..| |++||+||.++|+++++|||| |+.+...++ +. ++.|
T Consensus 76 ~q--------------~~~gl~~-----~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g 123 (261)
T 2eyu_A 76 NQ--------------REVGEDT-----KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETG 123 (261)
T ss_dssp EE--------------EEBTTTB-----SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTT
T ss_pred eH--------------HHhCCCH-----HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccC
Confidence 00 0233321 222 899999999999999999999 998865543 33 3468
Q ss_pred cEEEEEccCHhHHhhhCeEEEEe
Q psy6612 192 KTIIITTHYIEEAKGAHNIGLMR 214 (291)
Q Consensus 192 ~tii~~tHd~~~~~~~d~i~~l~ 214 (291)
.+|+++||+.+....|||++.|.
T Consensus 124 ~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 124 HLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp CEEEEEECCSSHHHHHHHHHHTS
T ss_pred CEEEEEeCcchHHHHHHHHhhhc
Confidence 99999999988555588877664
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=165.91 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=74.1
Q ss_pred CCCCcCcCChhHHHHHHHH------HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhC
Q psy6612 135 AKKIVGALSGGQQRRISFA------VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAH 208 (291)
Q Consensus 135 ~~~~~~~LSgGqkQrv~iA------ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d 208 (291)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.|.++.++|.|||++|||++....||
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d 130 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 130 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCC
Confidence 3578899999999999876 8999999999999999999999999999999999766899999999995444599
Q ss_pred eEEEE--eCCE
Q psy6612 209 NIGLM--RDDQ 217 (291)
Q Consensus 209 ~i~~l--~~G~ 217 (291)
++++| .+|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 99999 4553
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-24 Score=187.04 Aligned_cols=144 Identities=18% Similarity=0.187 Sum_probs=92.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCC-------CccEEEECCEec---CeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-------DAGTIKLSFRQI---SDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-------~~G~I~~~g~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
.+++|++++|+||||||||||+++|+|+..+ ..|.+++++... ..+++++|...+++. |+.+|+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~--- 96 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-EVLKHIYV--- 96 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHH-HHHHTEEE---
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHH-HHhhcEEE---
Confidence 6899999999999999999999999996655 233555555431 123333333333322 33333221
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhH-HHHHHHHHHHhc-------CCCEEEEcccCCCCCHH-------
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ-QRRISFAVSLLH-------NPKLLILDEPTVGLDPI------- 175 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq-kQrv~iAral~~-------~p~llllDEPtsgLD~~------- 175 (291)
....+.++ ++.+..+++++. +|+++++||||+++|+.
T Consensus 97 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 97 ----------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp ----------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred ----------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 11123332 233444444444 99999999999999984
Q ss_pred H-----HHHHHHHHHHhH-hCCcEEEEEccCHhH----Hhh-hCeEEEEeCC
Q psy6612 176 L-----SQIIWDRLKEMA-LNGKTIIITTHYIEE----AKG-AHNIGLMRDD 216 (291)
Q Consensus 176 ~-----~~~i~~~l~~l~-~~g~tii~~tHd~~~----~~~-~d~i~~l~~G 216 (291)
. ...+++.|.+++ +.|.|||++||+... +.. ||++++|++|
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 2 236778888876 458999999996554 766 9999999875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-25 Score=192.97 Aligned_cols=145 Identities=17% Similarity=0.141 Sum_probs=116.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCC--CCCCHHHHHHHhccccCCChHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALH--GELSIRETFRYYGYMFDMTDDQI 119 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~ 119 (291)
.++|+++||+||||||||||+++|+|++.| .++|++|++.++ ..+|+.++..+.. +.+....
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------~i~~v~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~ 66 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-------------RVALLPMDHYYKDLGHLPLEERLRVNY---DHPDAFD 66 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------GEEEEEGGGCBCCCTTSCHHHHHHSCT---TSGGGBC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------CeEEEecCccccCcccccHHHhcCCCC---CChhhhh
Confidence 578999999999999999999999999875 589999998776 5679988876532 2122222
Q ss_pred HHHHHHHHHHcCCCC-CCCCcCcCChhHH----HHHHHHHHHhcCCCEEEEcccCCC-------CCHHHHHHHHHHHHHh
Q psy6612 120 ETRSKEILKLLELPP-AKKIVGALSGGQQ----RRISFAVSLLHNPKLLILDEPTVG-------LDPILSQIIWDRLKEM 187 (291)
Q Consensus 120 ~~~~~~~l~~~~l~~-~~~~~~~LSgGqk----Qrv~iAral~~~p~llllDEPtsg-------LD~~~~~~i~~~l~~l 187 (291)
.+++.++++.+++.. .+.++.++|+||+ ||+++|++++.+|+++++||||++ ||+.....+.+.+.+.
T Consensus 67 ~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~ 146 (211)
T 3asz_A 67 LALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRD 146 (211)
T ss_dssp HHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHH
Confidence 345667777777754 5668889999974 788999999999999999999999 9999999999999876
Q ss_pred -HhCCcEEEEEccCHh
Q psy6612 188 -ALNGKTIIITTHYIE 202 (291)
Q Consensus 188 -~~~g~tii~~tHd~~ 202 (291)
.+.|.|++.++|++.
T Consensus 147 ~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 147 VLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHSCCCHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHH
Confidence 466899999999853
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-23 Score=211.06 Aligned_cols=174 Identities=15% Similarity=0.216 Sum_probs=116.2
Q ss_pred CcccccccceEEEEeEEEEE-----CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec
Q psy6612 10 DPEIIEVKHSVAVTSAYKKI-----GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI 83 (291)
Q Consensus 10 ~~~~~~~~~~l~~~~l~~~~-----~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~ 83 (291)
+|.+.+ +..+.+++..... +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|.. +-.. .
T Consensus 569 ~P~~~~-~~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~-~ 644 (800)
T 1wb9_A 569 CPTFID-KPGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQ-K 644 (800)
T ss_dssp CCEECS-SSCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSS-E
T ss_pred ccEECC-CCCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchh-c
Confidence 454433 4456666643222 456799999999 99999999999999999999999997422 22311 0000 0
Q ss_pred CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 84 SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 84 ~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
..+++++| ++..+++.||+. ...+.+|++|++ ++.+...+.+|+++
T Consensus 645 ~~i~~~~~---i~~~~~~~d~l~------------------------------~~~stf~~e~~~-~~~il~~a~~psLl 690 (800)
T 1wb9_A 645 VEIGPIDR---IFTRVGAADDLA------------------------------SGRSTFMVEMTE-TANILHNATEYSLV 690 (800)
T ss_dssp EEECCCCE---EEEEEC-----------------------------------------CHHHHHH-HHHHHHHCCTTEEE
T ss_pred ccceeHHH---HHhhCCHHHHHH------------------------------hhhhhhhHHHHH-HHHHHHhccCCCEE
Confidence 22444433 333334444332 122346777765 44445568999999
Q ss_pred EEcccCCCCCHHHHHHH-HHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEE
Q psy6612 164 ILDEPTVGLDPILSQII-WDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGR 221 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i-~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~ 221 (291)
|||||++|+|+.....+ ++++..+++ .|.++|++||+.+.+..||++..+.+|++..+
T Consensus 691 LLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 691 LMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp EEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred EEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99999999999877775 788888886 48999999999988777888777778776554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-23 Score=193.99 Aligned_cols=143 Identities=13% Similarity=0.044 Sum_probs=106.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++ ..++|++|++.+++.+++++|+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999775 1489999999998888999998754
Q ss_pred ccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 109 GYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.. .+.. ..+++..|..+ .....++...+||++||||++.+|+.++| .||+.+...+++.++++.
T Consensus 181 ~~-~~~d--------~~llDt~G~~~--~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~ 244 (304)
T 1rj9_A 181 KA-RGYD--------LLFVDTAGRLH--TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFH 244 (304)
T ss_dssp HH-HTCS--------EEEECCCCCCT--TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHH
T ss_pred Hh-CCCC--------EEEecCCCCCC--chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHH
Confidence 21 1100 01223334322 22223444558999999999999994444 455555556677777776
Q ss_pred hC-CcEEEEEccCHh
Q psy6612 189 LN-GKTIIITTHYIE 202 (291)
Q Consensus 189 ~~-g~tii~~tHd~~ 202 (291)
+. |.|+|++||+.+
T Consensus 245 ~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHCCSEEEEECTTS
T ss_pred HHcCCcEEEEECCcc
Confidence 43 899999999854
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-24 Score=215.32 Aligned_cols=177 Identities=14% Similarity=0.245 Sum_probs=112.3
Q ss_pred eEEEEeEEEEECCE--eeEeee----------eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEECCEec--
Q psy6612 19 SVAVTSAYKKIGNH--VVLKGL----------NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKLSFRQI-- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~--~~L~~v----------sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~~g~~~-- 83 (291)
++.++++++.|+.+ ++|+.+ +++++. +||+||||||||||+++|+|+..| ++|.|+++|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 46678899999753 355544 366665 999999999999999999999988 799999999874
Q ss_pred ----------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHH
Q psy6612 84 ----------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 ----------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iA 153 (291)
..+||+||++.+++.+||.+|+.+.....+.. ..++. . +++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~-------------~~~~s--~-----------~~i~l~ 140 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE-------------GMGIS--H-----------ELITLE 140 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS-------------SSCCC--S-----------CCEEEE
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC-------------ccccc--h-----------HHHHHH
Confidence 25899999999999999999987642211000 00111 1 112233
Q ss_pred HHHhcCCCEEEEccc------CCCCCHHHHHHHHHHHHHhHh--CCcEEEEEccCHhHH--------hh-----hCeEEE
Q psy6612 154 VSLLHNPKLLILDEP------TVGLDPILSQIIWDRLKEMAL--NGKTIIITTHYIEEA--------KG-----AHNIGL 212 (291)
Q Consensus 154 ral~~~p~llllDEP------tsgLD~~~~~~i~~~l~~l~~--~g~tii~~tHd~~~~--------~~-----~d~i~~ 212 (291)
.+....|+++|+||| |+|||+..+.++.++++++.+ .+.+++++||+++.+ .. +..|++
T Consensus 141 i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~V 220 (608)
T 3szr_A 141 ISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGI 220 (608)
T ss_dssp EEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEE
T ss_pred hcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEE
Confidence 334568999999999 999999999999999999753 367889999997632 21 245788
Q ss_pred EeCCEEEEEech
Q psy6612 213 MRDDQYIGRLVH 224 (291)
Q Consensus 213 l~~G~i~~~~~~ 224 (291)
+.++.++..++.
T Consensus 221 lTK~Dlv~~g~~ 232 (608)
T 3szr_A 221 LTKPDLVDKGTE 232 (608)
T ss_dssp EECGGGSSSSST
T ss_pred ecchhhcCcccH
Confidence 887766655544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.84 E-value=9.1e-23 Score=177.29 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=111.4
Q ss_pred CEeeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc
Q psy6612 31 NHVVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG 109 (291)
Q Consensus 31 ~~~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~ 109 (291)
+.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+ .+..+......
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~----------------~~~~~~~~~~~ 71 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE----------------ESRDSIIRQAK 71 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS----------------SCHHHHHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc----------------cCHHHHHHHHH
Confidence 3557888888 899999999999999999999999999887777777653321 12221111100
Q ss_pred cccCCChHHHHHH----HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCC--EEEEcccCCCC--CHHHHHHHH
Q psy6612 110 YMFDMTDDQIETR----SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK--LLILDEPTVGL--DPILSQIIW 181 (291)
Q Consensus 110 ~~~~~~~~~~~~~----~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~--llllDEPtsgL--D~~~~~~i~ 181 (291)
. .+......... ++.....++ . .......|.++.++...+.+...+|+ ++++||||+++ |+..+..++
T Consensus 72 ~-~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~ 147 (235)
T 2w0m_A 72 Q-FNWDFEEYIEKKLIIIDALMKEKE-D--QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKIS 147 (235)
T ss_dssp H-TTCCCGGGBTTTEEEEECCC-----C--TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHH
T ss_pred H-hcchHHHHhhCCEEEEeccccccC-c--eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHH
Confidence 0 01100000000 000000000 0 01123459999999888888888999 99999999888 999999999
Q ss_pred HHHHHhH-hCCcEEEEEccCH--------hHHhh-hCeEEEEeCC
Q psy6612 182 DRLKEMA-LNGKTIIITTHYI--------EEAKG-AHNIGLMRDD 216 (291)
Q Consensus 182 ~~l~~l~-~~g~tii~~tHd~--------~~~~~-~d~i~~l~~G 216 (291)
+.|++++ +.|.|||++||+. ..+.. ||++++|++.
T Consensus 148 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 148 YYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999986 5689999999999 44665 9999999864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-22 Score=190.50 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=103.2
Q ss_pred EeeEeee-eEEEeCCcEEEEECCCCccHHHHHHHHHcCC--CCCc----cE-EEECCEec---CeEEEEcCCCCCCCCCC
Q psy6612 32 HVVLKGL-NLNVPENKIYGLLGPSGCGKTTLLNCIVGRN--TLDA----GT-IKLSFRQI---SDIGYMPQELALHGELS 100 (291)
Q Consensus 32 ~~~L~~v-sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~--~p~~----G~-I~~~g~~~---~~ig~v~q~~~l~~~lt 100 (291)
.+.|+.+ ++.+++|++++|+||||||||||++.+++.. +|++ |. |++++++. .++++++|...+++. +
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHH-H
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHH-H
Confidence 3456666 6899999999999999999999999999998 6776 57 78887653 245555555544433 4
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh-------cCCCEEEEcccCCCCC
Q psy6612 101 IRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL-------HNPKLLILDEPTVGLD 173 (291)
Q Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~-------~~p~llllDEPtsgLD 173 (291)
+.+|+.+... .-|.+++|++.++++++ .+|+++|+||||+++|
T Consensus 196 v~~ni~~~~~------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 196 VLKHIYVARA------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HGGGEEEEEC------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred HhhCEEEEec------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 4444322110 01456777777777777 7899999999999999
Q ss_pred HHH------------HHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEE
Q psy6612 174 PIL------------SQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 174 ~~~------------~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i 218 (291)
+.. ..+++..|+++++ .|.|||+++|....... ++.......|++
T Consensus 246 ~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 246 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp HHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCC
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcce
Confidence 862 4566677777764 58999999998765532 233334444443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-22 Score=194.75 Aligned_cols=162 Identities=14% Similarity=0.168 Sum_probs=101.1
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEe---cCeEEEEcC
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQ---ISDIGYMPQ 91 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~---~~~ig~v~q 91 (291)
..+|.+++++++|+++.+++++||+| +|+||||||||||+++|+|...|+.| .+.+++.. ...+++++|
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35688899999999999999999998 99999999999999999999876554 22222111 135899999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCC---EEEEccc
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPK---LLILDEP 168 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~---llllDEP 168 (291)
++.+++.+|++||+.+..... .......+.+.++ ..++.+++||++||||++.+|+ +|++|||
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~~~---~~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldeP 148 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDAVD---NSNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 148 (418)
T ss_dssp ----CEEEEEEECC--------------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC
T ss_pred cCCcccceeeeechhhhhhcc---chhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecC
Confidence 988888899999987643221 1111112222221 1456678889999999999999 9999999
Q ss_pred C-CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 169 T-VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 169 t-sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
| ++||+... ++++.+.. +.+||+|.|-.+.
T Consensus 149 t~~~L~~~d~----~~lk~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 149 SGHGLKPLDI----EFMKRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp -CCSCCHHHH----HHHHHHTT-TSEEEEEEESTTS
T ss_pred cccCCCHHHH----HHHHHHhc-cCcEEEEEEcccC
Confidence 9 69999874 44555543 6788888776553
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-23 Score=180.31 Aligned_cols=149 Identities=19% Similarity=0.173 Sum_probs=99.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
|++++|+||||||||||+++|+|+++ ++| |.++|.+. +.+||++|+. ... .+++ ... .....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~-~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRV-GLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EEC-CCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcc-cccCC
Confidence 78999999999999999999999999 899 98888654 4589999975 111 1111 111 00000
Q ss_pred HHHHHHHHHHHHcCCC-CCCCCcCcCChhHHHHH-HHHH---HHhcCCCEEEEcc--cCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 118 QIETRSKEILKLLELP-PAKKIVGALSGGQQRRI-SFAV---SLLHNPKLLILDE--PTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkQrv-~iAr---al~~~p~llllDE--PtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
..... ...++...+|+|||+++ ++++ |++.+|++||+|| |+..+|+.....+.+++. .
T Consensus 70 -----------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~ 134 (189)
T 2i3b_A 70 -----------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T 134 (189)
T ss_dssp -----------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C
T ss_pred -----------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C
Confidence 00000 12455667999999988 4455 6899999999999 899999876555554444 3
Q ss_pred CcEEEE----EccCHhHHhhhCeEEEEeCCEEEE
Q psy6612 191 GKTIII----TTHYIEEAKGAHNIGLMRDDQYIG 220 (291)
Q Consensus 191 g~tii~----~tHd~~~~~~~d~i~~l~~G~i~~ 220 (291)
..++|+ +||+.+ ...+|++..+.+|+++.
T Consensus 135 ~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 135 PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEE
T ss_pred CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEE
Confidence 445553 449863 22245555566777654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-21 Score=168.51 Aligned_cols=171 Identities=11% Similarity=0.045 Sum_probs=102.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-----CCCccEEEECCEe-c-CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-----TLDAGTIKLSFRQ-I-SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-----~p~~G~I~~~g~~-~-~~ig~v~q 91 (291)
+|+++++++.|+ .+++++ |.+++|..++|+|+||||||||++.|+|.. .|+.|++.+.+.- + ..+- +.+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~-l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKR-LVD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEE-EEE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEE-EEE
Confidence 578899999997 578888 899999999999999999999999999998 7888877642210 0 0111 112
Q ss_pred CCCCCC----CCC---HHHHHHHhcc----------ccC--CChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHH-
Q psy6612 92 ELALHG----ELS---IRETFRYYGY----------MFD--MTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRR- 149 (291)
Q Consensus 92 ~~~l~~----~lt---v~enl~~~~~----------~~~--~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQr- 149 (291)
.+.... .-. ....+..... ... .........+.+++...++.. ...++..+|+||+||
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~ 158 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQ 158 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHH
Confidence 222211 000 1111111110 001 111122334555667777753 355678899999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcE
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 193 (291)
+..|++++.+|+++++|||||++|+.+...+++.|.++..++.|
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 159 LNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 89999999999999999999999999999999999998755543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=168.94 Aligned_cols=149 Identities=16% Similarity=0.199 Sum_probs=104.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDD 117 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~ 117 (291)
.+++|++++|+||||||||||++.+++... .|++. .|.+. ..+.|+..+... ..+...+.-.+ .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~~~~v~~~~~e~~~---~~~~~r~~~~g--~~~~~- 96 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELPTGPVIYLPAEDPP---TAIHHRLHALG--AHLSA- 96 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCCCCCEEEEESSSCH---HHHHHHHHHHH--TTSCH-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCCCccEEEEECCCCH---HHHHHHHHHHH--hhcCh-
Confidence 478999999999999999999999998654 56653 34432 346776654321 01112221111 11221
Q ss_pred HHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC--CCCHHH---HHHHHHHHHHhH-hC
Q psy6612 118 QIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV--GLDPIL---SQIIWDRLKEMA-LN 190 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts--gLD~~~---~~~i~~~l~~l~-~~ 190 (291)
....++++.+.+.. .++++..||+||+|++ ++++.+|+++++||||+ ++|+.. ...+++.|++++ +.
T Consensus 97 ---~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 97 ---EERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp ---HHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 23456678888765 5788999999998765 68889999999999999 999854 488888999886 45
Q ss_pred CcEEEEEccCHhHH
Q psy6612 191 GKTIIITTHYIEEA 204 (291)
Q Consensus 191 g~tii~~tHd~~~~ 204 (291)
|+|||+++|+....
T Consensus 171 g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 171 GCSIVFLHHASKGA 184 (279)
T ss_dssp CCEEEEEEEC----
T ss_pred CCEEEEEecCCCcc
Confidence 99999999998765
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-21 Score=182.45 Aligned_cols=130 Identities=17% Similarity=0.148 Sum_probs=92.0
Q ss_pred EeeEeeeeE-------EEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecC-----eEEEEcCCCCCCCC
Q psy6612 32 HVVLKGLNL-------NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQIS-----DIGYMPQELALHGE 98 (291)
Q Consensus 32 ~~~L~~vsl-------~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~-----~ig~v~q~~~l~~~ 98 (291)
.+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|...+.++. ..++++|.....
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~-- 180 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR-- 180 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT--
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecc--
Confidence 345566665 67889999999999999999999999999987 566644332221 111222211100
Q ss_pred CCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHH
Q psy6612 99 LSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178 (291)
Q Consensus 99 ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~ 178 (291)
..+|..+ +||+||.++|++|++|||| |+.+
T Consensus 181 -----------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~-- 210 (356)
T 3jvv_A 181 -----------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLET-- 210 (356)
T ss_dssp -----------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH--
T ss_pred -----------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH--
Confidence 0112111 9999999999999999999 6555
Q ss_pred HHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 179 ~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
++.+.++++.|.||++++|+.+.+..|||++.|..
T Consensus 211 --~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 211 --IRLALTAAETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp --HHHHHHHHHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred --HHHHHHHHhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 44444556679999999999998866999988854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-22 Score=173.51 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=99.3
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEec-----CeEEEEcCCCCCCCCCCH----HHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQI-----SDIGYMPQELALHGELSI----RETFRY 107 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~-----~~ig~v~q~~~l~~~ltv----~enl~~ 107 (291)
.-..++|++++|+||||||||||+++|+|+.+| ..|.|.+.+++. ..++|+||++.+|+.+++ .||+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 346789999999999999999999999999986 689998887654 248899988766655555 333333
Q ss_pred hccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.+..++.+. +.+ ..++..++++||| ||+.++.++++.+.
T Consensus 90 ~~~~yg~~~----~~v------------------------------~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 90 FGNYYGTSR----EAI------------------------------EQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp TTEEEEEEH----HHH------------------------------HHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred HhccCCCCH----HHH------------------------------HHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 222222211 112 2233347999999 99999999998876
Q ss_pred HhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 188 ALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
++.||+++||+++++.. |+ +.+| .++++++...+
T Consensus 129 --~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~rl 162 (219)
T 1s96_A 129 --HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKRM 162 (219)
T ss_dssp --TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHHH
T ss_pred --CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHHH
Confidence 58999999999999865 22 5666 46666665543
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-24 Score=181.93 Aligned_cols=168 Identities=15% Similarity=0.207 Sum_probs=112.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
|++++|+||||||||||+++|++ |.+|.+.++|.++ ...++++|....++.+++++++.+....+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 72 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLA------ 72 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHT------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhc------
Confidence 68999999999999999999997 6789999988765 23566666554344456777765432111000
Q ss_pred HHHHHHHHcCCCCCCCCcCcC--ChhHHHHHHHHH------HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcE
Q psy6612 122 RSKEILKLLELPPAKKIVGAL--SGGQQRRISFAV------SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKT 193 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~L--SgGqkQrv~iAr------al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~t 193 (291)
....+++.+......+.+.++ |+||+|++.++. +++.+|+...+|+ +||+..... ++.+..+.+.+.+
T Consensus 73 ~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ 148 (189)
T 2bdt_A 73 QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERY 148 (189)
T ss_dssp TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTS
T ss_pred CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccE
Confidence 000011111000011222345 899999988888 8999999888884 899988888 8888888656789
Q ss_pred EEEEccC-HhHHhh-hCeEEEEeCCEEEEEechhHH
Q psy6612 194 IIITTHY-IEEAKG-AHNIGLMRDDQYIGRLVHHDI 227 (291)
Q Consensus 194 ii~~tHd-~~~~~~-~d~i~~l~~G~i~~~~~~~~~ 227 (291)
+|.+||. +++++. ||+|+ ++|+++.+|+++.+
T Consensus 149 ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 149 FYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp EEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred EEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 9999999 999976 99998 99999888876543
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-22 Score=175.82 Aligned_cols=138 Identities=18% Similarity=0.180 Sum_probs=102.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEEECCEec-----CeEEEEcCCCCCCCCCCHHHHHHHhcc-----
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIV---GRNTLDAGTIKLSFRQI-----SDIGYMPQELALHGELSIRETFRYYGY----- 110 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~~~g~~~-----~~ig~v~q~~~l~~~ltv~enl~~~~~----- 110 (291)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+. ..+++++|+..+++..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 99999999998876432 224556788888888899999875321
Q ss_pred ---ccCCChHHHHHHHHHHHH--HcC------------CCC-CCCCcCcCChhHHHHHHHHHHH-hcCCCEEEEc----c
Q psy6612 111 ---MFDMTDDQIETRSKEILK--LLE------------LPP-AKKIVGALSGGQQRRISFAVSL-LHNPKLLILD----E 167 (291)
Q Consensus 111 ---~~~~~~~~~~~~~~~~l~--~~~------------l~~-~~~~~~~LSgGqkQrv~iAral-~~~p~llllD----E 167 (291)
+.+.+... ..+..+.. .++ +.. .++++.+||| |+ +|+ +.+|++++|| |
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 12222221 12222222 222 112 3577889999 66 788 9999999999 9
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
||++||+.++..+.+.++++.++
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHh
Confidence 99999999999999999998754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-20 Score=181.35 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=116.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEecCeEEEEcCCCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQISDIGYMPQELA 94 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~~ig~v~q~~~ 94 (291)
|++++ ++.|++.+ |+++||++++|++ ++|+||||||||||+|+|+|+.- .|.-.. .+.....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 33455 78898888 9999999999999 99999999999999999999841 221111 1112246999999999
Q ss_pred CCCCCCHHHHHHHhccccCC--C---hHHHHHHHHHHHHHc-CCC----C-CCCCc-----------CcCChhHHHHHHH
Q psy6612 95 LHGELSIRETFRYYGYMFDM--T---DDQIETRSKEILKLL-ELP----P-AKKIV-----------GALSGGQQRRISF 152 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~--~---~~~~~~~~~~~l~~~-~l~----~-~~~~~-----------~~LSgGqkQrv~i 152 (291)
+++.+|+.||+.++...... . .+.....+.+++... ++. . .+.++ ..|+-.. +.+
T Consensus 93 l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---iei 169 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVT 169 (427)
T ss_dssp CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHH
T ss_pred cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHH
Confidence 98889999998654321100 0 011233455555554 432 1 12221 2455554 799
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH-hHhCCcEEEEEccC
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE-MALNGKTIIITTHY 200 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~-l~~~g~tii~~tHd 200 (291)
+++|..+++++++|||+..|.+.....+.+.+++ +...|.+|+.+|.|
T Consensus 170 lk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 170 MKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999999999999999999999999999987 77779999998875
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=146.86 Aligned_cols=81 Identities=23% Similarity=0.216 Sum_probs=71.0
Q ss_pred CCCcCcCChhHHHHHHHHHHHhc----CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 136 KKIVGALSGGQQRRISFAVSLLH----NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 136 ~~~~~~LSgGqkQrv~iAral~~----~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
.+++..||||||||++|||+|+. .|+++||||||+|||+.++..+.++|+++.+ +.++|++||+......||+++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMMANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHHTTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHHHhCCEEE
Confidence 46788999999999999999985 4699999999999999999999999999864 468999999988777799997
Q ss_pred EE--eCCE
Q psy6612 212 LM--RDDQ 217 (291)
Q Consensus 212 ~l--~~G~ 217 (291)
.+ .+|.
T Consensus 138 ~v~~~~g~ 145 (173)
T 3kta_B 138 GVSMRDGV 145 (173)
T ss_dssp EEEEETTE
T ss_pred EEEecCCE
Confidence 55 5664
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-21 Score=163.78 Aligned_cols=144 Identities=11% Similarity=0.092 Sum_probs=94.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++ ..++|++|+.. +.+++.+|+.+......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999998 7889999998764 12456665433 34578888765322110
Q ss_pred CChHHHHHHHHHHHHHcCCCC---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhC
Q psy6612 114 MTDDQIETRSKEILKLLELPP---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN 190 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~---~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~ 190 (291)
.... ...++.++..+++.. .+.++..+|+|++|++++||++..+|+++ +|+...+.+++.+..+.+.
T Consensus 81 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 81 KEGY--FVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp HTSC--EEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred ccCC--eEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0000 000000111112211 13456789999999999999999999886 6888888888887776433
Q ss_pred CcEEEEEc
Q psy6612 191 GKTIIITT 198 (291)
Q Consensus 191 g~tii~~t 198 (291)
...+|.++
T Consensus 151 ~~~~i~t~ 158 (191)
T 1zp6_A 151 EHHVLPVS 158 (191)
T ss_dssp GGGEEECT
T ss_pred cccEEECC
Confidence 33344443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-18 Score=147.73 Aligned_cols=152 Identities=16% Similarity=0.064 Sum_probs=99.3
Q ss_pred eeEeeeeE-EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 33 VVLKGLNL-NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 33 ~~L~~vsl-~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+.|+.+.. .+++|++++|+||||||||||++.+++ .+..+ +.|+..+..+ +....... ...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~-----------v~~i~~~~~~----~~~~~~~~-~~~ 68 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKK-----------VAYVDTEGGF----SPERLVQM-AET 68 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSE-----------EEEEESSCCC----CHHHHHHH-HHT
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCc-----------EEEEECCCCC----CHHHHHHH-HHh
Confidence 35666655 689999999999999999999999999 32222 3333333211 22111111 111
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhH--HHHHHHHHHHhcC-CCEEEEcccCCCCCHHH--------HHHH
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQ--QRRISFAVSLLHN-PKLLILDEPTVGLDPIL--------SQII 180 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq--kQrv~iAral~~~-p~llllDEPtsgLD~~~--------~~~i 180 (291)
.+...+ ++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||+.+|+.. ...+
T Consensus 69 ~~~~~~-------~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~ 134 (220)
T 2cvh_A 69 RGLNPE-------EALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQ 134 (220)
T ss_dssp TTCCHH-------HHHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHH
T ss_pred cCCChH-------HHhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHH
Confidence 122111 122222 233455554 5688888999986 99999999999999743 3456
Q ss_pred HHHHHHhHh-CCcEEEEEccCHh-------------HHhh-hCeEEEEeCC
Q psy6612 181 WDRLKEMAL-NGKTIIITTHYIE-------------EAKG-AHNIGLMRDD 216 (291)
Q Consensus 181 ~~~l~~l~~-~g~tii~~tHd~~-------------~~~~-~d~i~~l~~G 216 (291)
++.|+++++ .|.|||+++|... .+.. ||++++|++.
T Consensus 135 ~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 135 LQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 666778764 4899999999865 4555 9999999753
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-22 Score=186.02 Aligned_cols=166 Identities=13% Similarity=0.168 Sum_probs=119.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------CeE
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SDI 86 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~i 86 (291)
++++++++.|+...+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.|.++ ..+
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i 109 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRM 109 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGS
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhh
Confidence 4567788888778899999999999999999999999999999999999999999999988764 247
Q ss_pred EEEcCCCCCCCCCC------------HHHHHH-----------------------------HhccccCCC-hHHH---HH
Q psy6612 87 GYMPQELALHGELS------------IRETFR-----------------------------YYGYMFDMT-DDQI---ET 121 (291)
Q Consensus 87 g~v~q~~~l~~~lt------------v~enl~-----------------------------~~~~~~~~~-~~~~---~~ 121 (291)
+|++|++.+|...+ +.|.+. +........ .++. +.
T Consensus 110 ~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~ 189 (337)
T 2qm8_A 110 ARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKK 189 (337)
T ss_dssp TTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCT
T ss_pred eeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHH
Confidence 89999988775321 222211 001111111 0110 01
Q ss_pred HHHHHHHHcCCCCCCC-CcCcCChhHHHHHHHHHHHhc------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHh
Q psy6612 122 RSKEILKLLELPPAKK-IVGALSGGQQRRISFAVSLLH------NPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~-~~~~LSgGqkQrv~iAral~~------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~ 189 (291)
.+.+....+.+...|. ...++|+|++|++..|++++. .|+++. ||++|......+++.|.++.+
T Consensus 190 ~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 190 GIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp THHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 1112222233333452 346789999999999999987 688876 999999999999999998753
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-20 Score=157.62 Aligned_cols=84 Identities=21% Similarity=0.234 Sum_probs=73.8
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCe----EEEEcCCCCCCCC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD----IGYMPQELALHGE 98 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~----ig~v~q~~~l~~~ 98 (291)
.++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.+ -.+++|++.+| .
T Consensus 11 ~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ 88 (158)
T 1htw_A 11 EFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-R 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT-T
T ss_pred HHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc-c
Confidence 56677888888999999999999999999999999999999999999 999999999976521 12789999888 8
Q ss_pred CCHHHHHHHh
Q psy6612 99 LSIRETFRYY 108 (291)
Q Consensus 99 ltv~enl~~~ 108 (291)
+|+.||+.+.
T Consensus 89 ltv~e~l~~~ 98 (158)
T 1htw_A 89 LADPEELEFM 98 (158)
T ss_dssp CSCTTHHHHS
T ss_pred CCcHHHHHHc
Confidence 9999999654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-18 Score=164.97 Aligned_cols=122 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCC-ccEEEECCEecC-----eEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD-AGTIKLSFRQIS-----DIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~-~G~I~~~g~~~~-----~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++. .++|++|.
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~--------------- 189 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR--------------- 189 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE---------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee---------------
Confidence 455554 7899999999999999999999999999998 899977654431 23333331
Q ss_pred hccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.+|++ +..| +.+|+++|.++|+++++|||+ |+..... .++..
T Consensus 190 ---------------------~~g~~-----~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~~ 231 (372)
T 2ewv_A 190 ---------------------EVGED-----TKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRAA 231 (372)
T ss_dssp ---------------------EBTTT-----BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHHH
T ss_pred ---------------------ecCCC-----HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHHH
Confidence 12221 2334 469999999999999999999 7766433 34433
Q ss_pred HhCCcEEEEEccCHhHHhhhCeEE
Q psy6612 188 ALNGKTIIITTHYIEEAKGAHNIG 211 (291)
Q Consensus 188 ~~~g~tii~~tHd~~~~~~~d~i~ 211 (291)
..|.+|+.++|+.+....|||++
T Consensus 232 -~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 232 -ETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp -TTTCEEEECCCCCSHHHHHHHHH
T ss_pred -hcCCEEEEEECcchHHHHHHHHH
Confidence 45889999999866334466653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-18 Score=160.16 Aligned_cols=116 Identities=20% Similarity=0.160 Sum_probs=90.2
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC-CCccEEEEC-CEec-----CeEEEEcCCCCCCCCCCHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLS-FRQI-----SDIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~-g~~~-----~~ig~v~q~~~l~~~ltv~enl~ 106 (291)
-++++++. .+|++++|+||||||||||+|+|+|+.. |++|+|.++ |+.. ..+++++|+..+++..+++++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh--
Confidence 45667764 4899999999999999999999999999 999999987 6432 468999999988888888874
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
. +++.+.++..+.+.++++.+++.. .++++.+|| ||+||++||+++
T Consensus 282 -~--l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 -G--LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp -C--CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred -h--hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 1 234556666677888899999966 688999999 999999999864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-18 Score=164.42 Aligned_cols=130 Identities=17% Similarity=0.131 Sum_probs=99.3
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEc-CCCCCCCCCCHHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMP-QELALHGELSIRETFR 106 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~-q~~~l~~~ltv~enl~ 106 (291)
++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|..- ..++|++ |++.+
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~----------- 233 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE----------- 233 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------------
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc-----------
Confidence 3999999999999999999999999999999999999999999987421 2345555 32210
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+++++.++..|+.++..+|+.+++|||.. ....+.|..
T Consensus 234 ----------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~ 272 (361)
T 2gza_A 234 ----------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINV 272 (361)
T ss_dssp ---------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHH
T ss_pred ----------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHH
Confidence 013444688899999999999999999986 345667777
Q ss_pred hHhCCcEEEEEccCHhHHhhhCeEEEEeCC
Q psy6612 187 MALNGKTIIITTHYIEEAKGAHNIGLMRDD 216 (291)
Q Consensus 187 l~~~g~tii~~tHd~~~~~~~d~i~~l~~G 216 (291)
+...+.|++.++|..+....++|+..+..+
T Consensus 273 l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 273 AASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp HHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 754346889999997744559999999875
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-20 Score=172.90 Aligned_cols=151 Identities=11% Similarity=-0.082 Sum_probs=97.9
Q ss_pred EeeeeEEEeC--CcEEEEECCCCccHHHHHHHHHcCCCCCc----cEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 35 LKGLNLNVPE--NKIYGLLGPSGCGKTTLLNCIVGRNTLDA----GTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 35 L~~vsl~i~~--Gei~~liGpNGaGKSTLl~~i~gl~~p~~----G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
.+.|+++|.+ |+.++|+||||||||||+|+|+|+++|++ |++++++..-. ++. .+..... +++.+.
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~------~~~-~~~~~~~-~~I~~~ 229 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGG------DEQ-AMQYSDY-PQMALG 229 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSS------CTT-SSCTTTH-HHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCC------Ccc-cCChhHH-HHHHHH
Confidence 4679999999 99999999999999999999999999999 87766321000 001 1111123 444432
Q ss_pred ccccCCChHHHHHHHHHHHHH---cCCCCCCCCcCcCChhHHHHHHHHHHHh-cCCCEEEEcc---cC------CCCCHH
Q psy6612 109 GYMFDMTDDQIETRSKEILKL---LELPPAKKIVGALSGGQQRRISFAVSLL-HNPKLLILDE---PT------VGLDPI 175 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~LSgGqkQrv~iAral~-~~p~llllDE---Pt------sgLD~~ 175 (291)
.. .. ........+. ++....++.+..+|+|++|+..+++++. .+|++++||| |+ .++|+.
T Consensus 230 ~q------~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~ 302 (365)
T 1lw7_A 230 HQ------RY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQK 302 (365)
T ss_dssp HH------HH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CC
T ss_pred HH------HH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHH
Confidence 11 00 0000011111 1111123345567788888888888874 6999999999 65 589999
Q ss_pred HHHHHHHHHHHhH-hCCcEEEEEccC
Q psy6612 176 LSQIIWDRLKEMA-LNGKTIIITTHY 200 (291)
Q Consensus 176 ~~~~i~~~l~~l~-~~g~tii~~tHd 200 (291)
.+..+.+.|.++. +.+.+|++++|.
T Consensus 303 ~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 303 QRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp SHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 9999999999876 348899999985
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-17 Score=146.45 Aligned_cols=147 Identities=14% Similarity=0.194 Sum_probs=84.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc--CCCC-----CccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG--RNTL-----DAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g--l~~p-----~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.. . .+........ ...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~-----------~----~~~~~~~~~~-~~~g 83 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG-----------T----FRPERLLAVA-ERYG 83 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS-----------C----CCHHHHHHHH-HHTT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC-----------C----cCHHHHHHHH-HHcC
Confidence 488999999999999999999999999 5655 45666665432 1 1111111111 1112
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHH-HHHHHHHh--cCCCEEEEcccCCCCCHH-------H-----HH
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR-ISFAVSLL--HNPKLLILDEPTVGLDPI-------L-----SQ 178 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQr-v~iAral~--~~p~llllDEPtsgLD~~-------~-----~~ 178 (291)
.... ++++.+. .....+..+... +.-+..++ .+|+++++|||++.+|+. . ..
T Consensus 84 ~~~~-------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 84 LSGS-------DVLDNVA------YARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp CCHH-------HHHHTEE------EEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred CCHH-------HHhhCeE------EEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 2211 1122111 112345444332 23233333 589999999999999985 3 34
Q ss_pred HHHHHHHHhHh-CCcEEEEEccCHhHH-------------------h-hhCeEEEEeCC
Q psy6612 179 IIWDRLKEMAL-NGKTIIITTHYIEEA-------------------K-GAHNIGLMRDD 216 (291)
Q Consensus 179 ~i~~~l~~l~~-~g~tii~~tHd~~~~-------------------~-~~d~i~~l~~G 216 (291)
.++..|.++++ .|.|||+++|..... . .||++++|+++
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 56666666654 489999999976543 1 37888888754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.5e-21 Score=175.99 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=96.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC--------CCCccEEEECCEecCe------------------------EEEE---c
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN--------TLDAGTIKLSFRQISD------------------------IGYM---P 90 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~--------~p~~G~I~~~g~~~~~------------------------ig~v---~ 90 (291)
++++|+|+||||||||+|+|+|+. .|+.|+|.++|.++.. ++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 7899999999876521 3444 4
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHH------------HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhc
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETR------------SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLH 158 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~------------~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~ 158 (291)
|++.++++.++.||..++. ....... +..++..+++....+...+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~------p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD------PGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC------HHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC------HHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 5555444555555543210 0111001 111223334433212233799999999999999999
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEE 203 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~ 203 (291)
+|+++ ||| ..+.+.|+++. .+.||+++||+...
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 99987 999 77888888875 57999999996433
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-18 Score=156.89 Aligned_cols=155 Identities=10% Similarity=0.043 Sum_probs=110.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------------eEEEEcCCCCCCCCCCHHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------------DIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------------~ig~v~q~~~l~~~ltv~enl~ 106 (291)
.++|++++|+||||||||||+++|+|+++|++|+|.+.|.++. .+.+++|...+++.+++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999998762 2569999999999999999997
Q ss_pred HhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHH
Q psy6612 107 YYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185 (291)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~ 185 (291)
+.... +.. . -+++..|..+ ....+.+|| .++|++..++.+++||.++. ..+.+.++
T Consensus 206 ~~~~~-~~d------~--vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-------~~~~~~~~ 262 (328)
T 3e70_C 206 HAKAR-GID------V--VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-------NAIVEQAR 262 (328)
T ss_dssp HHHHH-TCS------E--EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-------THHHHHHH
T ss_pred HHHhc-cch------h--hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-------HHHHHHHH
Confidence 64211 000 0 0123334432 233444454 48999998888888885554 35556666
Q ss_pred HhH-hCCcEEEEEccCHhH---------Hhh-hCeEEEEeCCEEE
Q psy6612 186 EMA-LNGKTIIITTHYIEE---------AKG-AHNIGLMRDDQYI 219 (291)
Q Consensus 186 ~l~-~~g~tii~~tHd~~~---------~~~-~d~i~~l~~G~i~ 219 (291)
.+. +.+.|+|++||.-+. +.. .-.|.++..|+-+
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 666 358999999995421 112 3457777777543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-17 Score=155.60 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=95.6
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC-----------CCCccEEEECCEecCeEEEEcCCCCCCCCCCHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN-----------TLDAGTIKLSFRQISDIGYMPQELALHGELSIRE 103 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~-----------~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~e 103 (291)
-+++||+++.|+.++|+|+||||||||+++|+|.. .|+.|.|.+++. .-..+.+.+.+.... .+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~---~~~~l~DtpGli~~a--~~ 221 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE---ERFTLADIPGIIEGA--SE 221 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS---CEEEEEECCCCCCCG--GG
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc---ceEEEEeccccccch--hh
Confidence 47999999999999999999999999999999983 344444444330 111233444433220 00
Q ss_pred HHHHhccccCCChHHHH--HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH
Q psy6612 104 TFRYYGYMFDMTDDQIE--TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181 (291)
Q Consensus 104 nl~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~ 181 (291)
..++.....+ +++..++..+++. +.++.+||+||+|++.+|++|+..|.++++ +.+|+..+ ..+
T Consensus 222 -------~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~ 287 (416)
T 1udx_A 222 -------GKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAV 287 (416)
T ss_dssp -------SCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHH
T ss_pred -------hhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHH
Confidence 0111111111 1122233444444 567889999999999999999999999999 99999877 444
Q ss_pred HHHHHh-HhCCcEEEEEcc
Q psy6612 182 DRLKEM-ALNGKTIIITTH 199 (291)
Q Consensus 182 ~~l~~l-~~~g~tii~~tH 199 (291)
+.+.+. .+.+.+++++|.
T Consensus 288 ~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 288 KALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHhcCCeEEEEEC
Confidence 555444 445777776653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-17 Score=161.75 Aligned_cols=147 Identities=16% Similarity=0.146 Sum_probs=103.6
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------------CeEEEEcCCCCCCCCC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------------SDIGYMPQELALHGEL 99 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------------~~ig~v~q~~~l~~~l 99 (291)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+. ..++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4689999999999999999999999999999999999999999976543 2489999998888888
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh-cCC-CEEEEcccCCCCCHHHH
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL-HNP-KLLILDEPTVGLDPILS 177 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~-~~p-~llllDEPtsgLD~~~~ 177 (291)
++++|+.+... .+.. . -+++..|....+ ..|-.-.+|++.+++++. ..| ++||...|++|.|..
T Consensus 363 tV~e~l~~a~~-~~~D------v--VLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al-- 428 (503)
T 2yhs_A 363 VIFDAIQAAKA-RNID------V--LIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV-- 428 (503)
T ss_dssp HHHHHHHHHHH-TTCS------E--EEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--
T ss_pred HHHHHHHHHHh-cCCC------E--EEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH--
Confidence 99999987532 1110 0 012222321110 112123358888999774 456 456566688886654
Q ss_pred HHHHHHHHHhHh-CCcEEEEEcc
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTH 199 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tH 199 (291)
+.++.+.+ -+.|.+++||
T Consensus 429 ----~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 429 ----SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp ----HHHHHHHHHTCCSEEEEEC
T ss_pred ----HHHHHHHhhcCCCEEEEEc
Confidence 33444443 4789999999
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.1e-16 Score=144.89 Aligned_cols=78 Identities=31% Similarity=0.330 Sum_probs=68.5
Q ss_pred CCcCcCChhHHHHH------HHHHHHhcC-CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCe
Q psy6612 137 KIVGALSGGQQRRI------SFAVSLLHN-PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHN 209 (291)
Q Consensus 137 ~~~~~LSgGqkQrv------~iAral~~~-p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~ 209 (291)
+++..||||||||+ ++|+|++.+ |++|||||||+|||+..+..+.+.|.++.+ +.+||++||+++....||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRELEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGGGGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHHHHhhCCE
Confidence 56789999999988 567899999 999999999999999999999999999753 4689999999875445999
Q ss_pred EEEEeC
Q psy6612 210 IGLMRD 215 (291)
Q Consensus 210 i~~l~~ 215 (291)
+++|++
T Consensus 355 ~~~l~k 360 (371)
T 3auy_A 355 IINVKK 360 (371)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999973
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-16 Score=131.77 Aligned_cols=112 Identities=22% Similarity=0.185 Sum_probs=79.1
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
||++++|+.++|+||||||||||+++|++.+.|++|.. +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~---------~~~----------~~~~~~~~~~---------- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR---------GYF----------FDTKDLIFRL---------- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC---------CCE----------EEHHHHHHHH----------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe---------EEE----------EEHHHHHHHH----------
Confidence 56778899999999999999999999999987766621 111 2333332211
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 119 IETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
......... . -+...+.+|++|+||||++ ++|+..+..+.+++....++|+++|++
T Consensus 83 -----~~~~~~~~~---~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 83 -----KHLMDEGKD---T---------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp -----HHHHHHTCC---S---------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -----HHHhcCchH---H---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 011111000 0 0112234999999999985 999999999999999987788999999
Q ss_pred ccCHh
Q psy6612 198 THYIE 202 (291)
Q Consensus 198 tHd~~ 202 (291)
||...
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 99753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.8e-19 Score=172.32 Aligned_cols=164 Identities=19% Similarity=0.182 Sum_probs=110.1
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe-c-----CeEEEEcCCCCCCCCCCHHHHHH
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ-I-----SDIGYMPQELALHGELSIRETFR 106 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~-~-----~~ig~v~q~~~l~~~ltv~enl~ 106 (291)
.+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.. + ..+++..|........|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46789999999999999999999999999999999999999999998864 2 23566665543222234444433
Q ss_pred Hhcccc-------CCChHHHHH------------------HHHHHHHHc-----CCCC-----CC---CCcCcCChhHHH
Q psy6612 107 YYGYMF-------DMTDDQIET------------------RSKEILKLL-----ELPP-----AK---KIVGALSGGQQR 148 (291)
Q Consensus 107 ~~~~~~-------~~~~~~~~~------------------~~~~~l~~~-----~l~~-----~~---~~~~~LSgGqkQ 148 (291)
...+.. .....+... .+.++++++ ++.. .+ .....+|+||+|
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~ 407 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRL 407 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEE
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCce
Confidence 221110 000111100 112222222 2211 11 233468999999
Q ss_pred HHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEE--EccCHhHHhh-hC
Q psy6612 149 RISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIII--TTHYIEEAKG-AH 208 (291)
Q Consensus 149 rv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~--~tHd~~~~~~-~d 208 (291)
|.++|. + | |+||||.....+++.|.++...+.|+++ +||+++++.. |+
T Consensus 408 R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 408 RRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred EEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 987752 2 7 9999999888888888888766889885 9999999965 74
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-17 Score=152.12 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=83.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEec---------CeEEEEcCCCCCC-----CCCCHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQI---------SDIGYMPQELALH-----GELSIRE 103 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~---------~~ig~v~q~~~l~-----~~ltv~e 103 (291)
++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|++. +.+||++|+|.+. +.+|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 88654 2479999998664 67899 8
Q ss_pred HH--HHh------ccccC-CChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHH
Q psy6612 104 TF--RYY------GYMFD-MTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 104 nl--~~~------~~~~~-~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAr 154 (291)
|+ .|. +.+.+ ....+...++.++++.++|+. .++++..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 87 332 11222 122333457889999999974 57889999999999999987
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-19 Score=173.75 Aligned_cols=136 Identities=19% Similarity=0.130 Sum_probs=98.6
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC-------------eEE
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-------------DIG 87 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~-------------~ig 87 (291)
+++++.+.|+...+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|.+.+.++. +++
T Consensus 145 ~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g 222 (418)
T 1p9r_A 145 DLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVD 222 (418)
T ss_dssp CGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGT
T ss_pred CHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccC
Confidence 344555556555677777 5 3899999999999999999999999999999999998876541 244
Q ss_pred EEc---------CCCCCC--CC----CCHHHHHHHhcc-------ccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh
Q psy6612 88 YMP---------QELALH--GE----LSIRETFRYYGY-------MFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145 (291)
Q Consensus 88 ~v~---------q~~~l~--~~----ltv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 145 (291)
+.| |+|.++ .. .|+.+++.+... ++..+. ...+ +.+..+++... ..+..||||
T Consensus 223 ~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~---~~~i-~rL~~lgl~~~-~~~~~LSgg 297 (418)
T 1p9r_A 223 MTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA---VGAV-TRLRDMGIEPF-LISSSLLGV 297 (418)
T ss_dssp BCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS---HHHH-HHHHHHTCCHH-HHHHHEEEE
T ss_pred cCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH---HHHH-HHHHHcCCcHH-HHHHHHHHH
Confidence 554 888652 33 588888876421 121111 1222 34666787643 367899999
Q ss_pred HHHHHHHHHHHhcCCCEEEE
Q psy6612 146 QQRRISFAVSLLHNPKLLIL 165 (291)
Q Consensus 146 qkQrv~iAral~~~p~llll 165 (291)
|+|| |||+|+.+|++..-
T Consensus 298 ~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEE--EEEEECTTTCEEEE
T ss_pred HHHH--hhhhhcCCCCccCC
Confidence 9999 99999999998763
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.6e-16 Score=128.17 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=71.2
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
+|+++ +|+.++|+||||||||||+++|++...+ +| .+++++.++ . ..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~-----------~-~~------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM-----------P-LT------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS-----------C-CC-------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh-----------h-HH-------------
Confidence 45555 8999999999999999999999999876 46 333332211 0 00
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g 191 (291)
+++.+|++|++|||++ +|+..+..+++++..+.++|
T Consensus 79 -------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g 114 (149)
T 2kjq_A 79 -------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSG 114 (149)
T ss_dssp -------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcC
Confidence 2356899999999998 66666999999999988778
Q ss_pred cE-EEEEccC
Q psy6612 192 KT-IIITTHY 200 (291)
Q Consensus 192 ~t-ii~~tHd 200 (291)
++ +|++||.
T Consensus 115 ~~~iiits~~ 124 (149)
T 2kjq_A 115 KGFLLLGSEY 124 (149)
T ss_dssp CCEEEEEESS
T ss_pred CcEEEEECCC
Confidence 88 8888884
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-19 Score=165.25 Aligned_cols=165 Identities=21% Similarity=0.184 Sum_probs=116.2
Q ss_pred EEEeEEEEECCEeeEeeeeEEEeCC-------cEEEEECCCCccHHHHHHHHHcCC----CCCccEEEECCEec------
Q psy6612 21 AVTSAYKKIGNHVVLKGLNLNVPEN-------KIYGLLGPSGCGKTTLLNCIVGRN----TLDAGTIKLSFRQI------ 83 (291)
Q Consensus 21 ~~~~l~~~~~~~~~L~~vsl~i~~G-------ei~~liGpNGaGKSTLl~~i~gl~----~p~~G~I~~~g~~~------ 83 (291)
+.++++..||+..+++++++.+++| +.++|+||||||||||+++|+|.+ .+++|.+..++.++
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 3455666788888999999999887 899999999999999999999998 77888887666443
Q ss_pred ---CeEEEEcCCCCCCCCCCHHHHHHHhccccCCC----hHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 ---SDIGYMPQELALHGELSIRETFRYYGYMFDMT----DDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 ---~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral 156 (291)
..|.|++|...+.+ ++.|++......++.. .....+.+...+..+++....++++.||+|++||+.++
T Consensus 100 ~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~--- 174 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII--- 174 (334)
T ss_dssp CCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE---
T ss_pred ccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce---
Confidence 35899999877765 7888775332222211 11222344445555665445677899999999998655
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hC
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AH 208 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d 208 (291)
.+||+.+...+.++|++.++ .+ ++|+.+.+.. |+
T Consensus 175 -------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~ 210 (334)
T 1in4_A 175 -------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAK 210 (334)
T ss_dssp -------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHH
T ss_pred -------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHH
Confidence 78888899999999998864 34 3677776654 44
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-15 Score=140.83 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=77.3
Q ss_pred EEEEECCCCccHHHHHHHHHc-CCCCCccEEEECCEec-------CeEEEEcCCCCCCCCCCHHHHHHHhccccCC-ChH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG-RNTLDAGTIKLSFRQI-------SDIGYMPQELALHGELSIRETFRYYGYMFDM-TDD 117 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g-l~~p~~G~I~~~g~~~-------~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~-~~~ 117 (291)
.+.|.||||+|||||++++++ +..|+.|.+.++|.+. ..+++++|...+....+ + .+. ...
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~ 107 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNNDRI 107 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------------CCHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcchH
Confidence 489999999999999999999 8899999999988654 24667777653311100 0 011 111
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEE
Q psy6612 118 QIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIIT 197 (291)
Q Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~ 197 (291)
..++.+.++....++ +... .||| +..+|+++|+|||++ ||+.++..+++.|.+.. .+.++|++
T Consensus 108 ~~~~~i~~~~~~~~~---~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~ 170 (354)
T 1sxj_E 108 VIQELLKEVAQMEQV---DFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMV 170 (354)
T ss_dssp HHHHHHHHHTTTTC---------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEE
T ss_pred HHHHHHHHHHHhccc---cccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEE
Confidence 122222222222222 2222 5676 778999999999999 99999999999999875 46899999
Q ss_pred ccCHhHH
Q psy6612 198 THYIEEA 204 (291)
Q Consensus 198 tHd~~~~ 204 (291)
||+++.+
T Consensus 171 t~~~~~l 177 (354)
T 1sxj_E 171 CDSMSPI 177 (354)
T ss_dssp ESCSCSS
T ss_pred eCCHHHH
Confidence 9997654
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-17 Score=149.25 Aligned_cols=125 Identities=15% Similarity=0.051 Sum_probs=88.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhc------cccCCCh
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYG------YMFDMTD 116 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~------~~~~~~~ 116 (291)
.++.++||.||+|||||||.+.|++++.+. | ...+.+.+|+|+..+++. +.++|+.+.. ..++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccccCCh-HHHHHHhccccccchhhhccCcc
Confidence 568899999999999999999999998763 2 113445666999988865 8888887642 1112222
Q ss_pred HHHHHHHHHHHHHcCCC------C---CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHH
Q psy6612 117 DQIETRSKEILKLLELP------P---AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPI 175 (291)
Q Consensus 117 ~~~~~~~~~~l~~~~l~------~---~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~ 175 (291)
......+.+.++.+... . ...+-..+||||+||+.+|++.+.+|+|+|+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 22233455556655332 1 12344689999999999984333399999999999999985
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-17 Score=141.01 Aligned_cols=129 Identities=15% Similarity=0.069 Sum_probs=81.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECCEecC-------------eEE----EEcCCCCCCCCCCHHHHH
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSFRQIS-------------DIG----YMPQELALHGELSIRETF 105 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g~~~~-------------~ig----~v~q~~~l~~~ltv~enl 105 (291)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++. .+| +++|++.+|-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 589999999999999999999999998 899999987631 244 6666654430
Q ss_pred HHhccccCCChHHHHHHHHHHHHH-cCCCCCCCCc-CcCChhHHHHHHHHHHHhcCCCEE-------EEcccCC---CCC
Q psy6612 106 RYYGYMFDMTDDQIETRSKEILKL-LELPPAKKIV-GALSGGQQRRISFAVSLLHNPKLL-------ILDEPTV---GLD 173 (291)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~-~~LSgGqkQrv~iAral~~~p~ll-------llDEPts---gLD 173 (291)
.. ...+....+.++++. +. ..+..+ ..|||||+||++||||++.+|++. +-|.|.. -+|
T Consensus 75 ------~~-~~~~~~a~l~~~i~~~l~--g~dt~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 75 ------RR-VSEEEGNDLDWIYERYLS--DYDLVITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp ------EE-CCHHHHTCHHHHHHHHTT--TCSEEEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred ------ec-CChhhhhCHHHHHHhhCC--CCCEEEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 00 011111134455554 43 222222 249999999999999999999873 2355532 234
Q ss_pred HHHHHHHHHHHHHhHhCC
Q psy6612 174 PILSQIIWDRLKEMALNG 191 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~~~g 191 (291)
......+.++|.+...+|
T Consensus 146 ~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 146 RDEVERIAEFILSLLREG 163 (171)
T ss_dssp TTCHHHHHHHHHHHHTC-
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 455677888886665554
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=137.90 Aligned_cols=130 Identities=17% Similarity=0.215 Sum_probs=77.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHH--HHHcCCCCCcc-----EEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLN--CIVGRNTLDAG-----TIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~--~i~gl~~p~~G-----~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
-|++|++++|+||||||||||++ +++++.+++.| .++++++.. +... .+.......+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~---------------~~~~-rl~~~a~~~g 237 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT---------------FRPV-RLVSIAQRFG 237 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC---------------CCHH-HHHHHHHHTT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc---------------cCHH-HHHHHHHHcC
Confidence 68999999999999999999999 45677776554 555554321 0111 1110111112
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHH--HHHHHHHHH--hcCCCEEEEcccCCCCCHHHH------------
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQ--RRISFAVSL--LHNPKLLILDEPTVGLDPILS------------ 177 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqk--Qrv~iAral--~~~p~llllDEPtsgLD~~~~------------ 177 (291)
+... .+++.+ .+.....++. +.+.-++.+ ..+|+++++|||++.+|+...
T Consensus 238 l~~~-------~vleni-------~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l 303 (400)
T 3lda_A 238 LDPD-------DALNNV-------AYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHL 303 (400)
T ss_dssp CCHH-------HHHHTE-------EEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHH
T ss_pred CChH-------hHhhcE-------EEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHH
Confidence 2111 112211 1111222333 333333333 257999999999999997543
Q ss_pred HHHHHHHHHhHh-CCcEEEEEccC
Q psy6612 178 QIIWDRLKEMAL-NGKTIIITTHY 200 (291)
Q Consensus 178 ~~i~~~l~~l~~-~g~tii~~tHd 200 (291)
..+++.|+++++ .|.|||+++|.
T Consensus 304 ~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 304 AKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCEEEEEEee
Confidence 667888888874 48999999998
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-17 Score=158.81 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=118.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc------------CCCCCccEEEECCEec-------------CeEEEEcCCCCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG------------RNTLDAGTIKLSFRQI-------------SDIGYMPQELAL 95 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g------------l~~p~~G~I~~~g~~~-------------~~ig~v~q~~~l 95 (291)
.+++|..+||+|+||||||||+|+|+| .+.|+.|.+.+.|..+ ....++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 5679999999987432 123577888888
Q ss_pred CCCCCHHHHH--HHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCC--CEEEEcccCCC
Q psy6612 96 HGELSIRETF--RYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNP--KLLILDEPTVG 171 (291)
Q Consensus 96 ~~~ltv~enl--~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p--~llllDEPtsg 171 (291)
+...+..+++ .|...++. ++.++..++.. .+..+..+|+++ +| +++++|||+++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~---------~d~il~Vvd~~-~d~~i~~v~~~~------------dP~~di~ildeel~~ 153 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA---------VDAIYQVVRAF-DDAEIIHVEGDV------------DPIRDLSIIVDELLI 153 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT---------CSEEEEEEECC-CTTCSSCCSSSS------------CHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH---------HHHHHHHHhcc-ccceeeeecccc------------CcchhhhhchhhhHH
Confidence 8877765544 22221111 11112222221 134555577764 99 99999999999
Q ss_pred CCHHHHHHHHHHHHHh-HhCCcEEEEEccCHhHHhh-hCeEE-EEeCC-EEEEEech
Q psy6612 172 LDPILSQIIWDRLKEM-ALNGKTIIITTHYIEEAKG-AHNIG-LMRDD-QYIGRLVH 224 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l-~~~g~tii~~tHd~~~~~~-~d~i~-~l~~G-~i~~~~~~ 224 (291)
+|+......++.+..+ .+.|.|++ +|++..+.. |+++. +|.+| +++..+..
T Consensus 154 ~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 154 KDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999998 66677764 999999876 99998 99999 87755543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8e-18 Score=154.91 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEE-------------------eCCcEEEEECCCCccHHHHHHHHHcCCC--CCc
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNV-------------------PENKIYGLLGPSGCGKTTLLNCIVGRNT--LDA 73 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i-------------------~~Gei~~liGpNGaGKSTLl~~i~gl~~--p~~ 73 (291)
.++.+|+++++++.| .++++++|+.+ ++|+++||+||||||||||+++|+|++. |++
T Consensus 33 ~~~~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 33 GINEDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp HHCTTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred CCccccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 345678889999999 47899999988 9999999999999999999999999988 999
Q ss_pred cEEEE---CCEec-----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChh
Q psy6612 74 GTIKL---SFRQI-----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGG 145 (291)
Q Consensus 74 G~I~~---~g~~~-----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 145 (291)
|+|.+ +|... ..+|++ |...+++.+++.+|+.+...+.... .....+....+.+
T Consensus 111 G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~i~~P~~~~~~~ 172 (308)
T 1sq5_A 111 RRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV-----------------PNVTAPVYSHLIY 172 (308)
T ss_dssp CCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC-----------------SCEEECCEETTTT
T ss_pred CeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC-----------------Cceeccccccccc
Confidence 99999 87653 246777 8777778889999887654332110 0011122222222
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 146 QQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 146 qkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
+|+..+.+.+.+|+++|+|.|....++
T Consensus 173 --~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 173 --DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp --EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred --CcccccceecCCCCEEEECchhhCCCc
Confidence 333323344567999999999998874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-16 Score=145.33 Aligned_cols=101 Identities=22% Similarity=0.186 Sum_probs=72.2
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEec---------CeEEEEcCCCC-------------
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQI---------SDIGYMPQELA------------- 94 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~---------~~ig~v~q~~~------------- 94 (291)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++ +.+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 78764 24899999985
Q ss_pred ---CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-C-CCCCcCcCCh
Q psy6612 95 ---LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-P-AKKIVGALSG 144 (291)
Q Consensus 95 ---l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~~~~~LSg 144 (291)
+|+.+|+ +|+.|....+ ..+...++.++++.++|+ . .++++..||+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNH---VDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCS---SSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcC---CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5788888 8887653211 122345788999999996 4 5788888885
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-18 Score=157.26 Aligned_cols=137 Identities=18% Similarity=0.227 Sum_probs=97.2
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCC-CCCCCC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQEL-ALHGEL 99 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~-~l~~~l 99 (291)
+...+++++++++++| ++|+||||||||||+|+|+|...+ |.|.++|.++ +.++++||.. ..++.+
T Consensus 31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 4456889999999999 999999999999999999999876 7899988665 2366777764 344555
Q ss_pred CHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC--------
Q psy6612 100 SIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-------- 170 (291)
Q Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-------- 170 (291)
++.|++......++ . ... . .... .++.+.+|||||+||+.+++|+..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~----~--~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 107 IFFDEVDALCPRRS----D--RET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp EEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred EeeehhhhhhcccC----C--Ccc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 55565543221110 0 000 0 0122 35667889999999999999999999985 99964
Q ss_pred ----CCCHHHHHHHHHHH
Q psy6612 171 ----GLDPILSQIIWDRL 184 (291)
Q Consensus 171 ----gLD~~~~~~i~~~l 184 (291)
--|...+..+++.+
T Consensus 173 i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EECCSCCHHHHHHHHHHH
T ss_pred EEeCCcCHHHHHHHHHHH
Confidence 34677777766654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-16 Score=138.70 Aligned_cols=146 Identities=12% Similarity=0.117 Sum_probs=86.0
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+++++...+.. +..+++.... ..+.+......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g---------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 86 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G---------LPAEVVPMDGFHLDN-RLLEPRGLLP-RKGAPETFDFE 86 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T---------CCEEEEESGGGBCCH-HHHGGGTCGG-GTTSGGGBCHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C---------CceEEEecCCCcCCH-HHHHHhcccc-cCCCCchhhHH
Confidence 5789999999999999999999999999875 3 235666665543332 2222221100 01111100011
Q ss_pred HHHHHHHHc--C--CC-C-CCCCcCcCChhHHHHHHHH-HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEE
Q psy6612 122 RSKEILKLL--E--LP-P-AKKIVGALSGGQQRRISFA-VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTI 194 (291)
Q Consensus 122 ~~~~~l~~~--~--l~-~-~~~~~~~LSgGqkQrv~iA-ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~ti 194 (291)
.+.+.+..+ + +. . .++ ...+|+||+||+++| ++++.++.++++|||.. . .+.+.--.+
T Consensus 87 ~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~---~l~~~~d~~ 151 (208)
T 3c8u_A 87 GFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------R---DLTAIWDVS 151 (208)
T ss_dssp HHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------G---GGGGTCSEE
T ss_pred HHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh-----------H---HHHHhcCEE
Confidence 222223222 1 11 1 222 234799999999998 88888888888888841 1 112222368
Q ss_pred EEEccCHhHH-hh-hCeEEEEeCC
Q psy6612 195 IITTHYIEEA-KG-AHNIGLMRDD 216 (291)
Q Consensus 195 i~~tHd~~~~-~~-~d~i~~l~~G 216 (291)
++++++.+.. .+ +.|. +..|
T Consensus 152 i~vd~~~~~~~~R~~~R~--~~~g 173 (208)
T 3c8u_A 152 IRLEVPMADLEARLVQRW--LDHG 173 (208)
T ss_dssp EEECCCHHHHHHHHHHHH--HHTT
T ss_pred EEEeCCHHHHHHHHHHHH--HhcC
Confidence 8899988874 44 6652 4455
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-18 Score=152.37 Aligned_cols=161 Identities=17% Similarity=0.118 Sum_probs=65.0
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH-cCCC------------CCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV-GRNT------------LDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~-gl~~------------p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
.+..+++||++++|++++|+||||||||||+++|+ |+++ |..|++ + .++|.++++..|..
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~-----g~~~~~~~~~~~~~ 86 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--E-----GKDYYFVDREEFLR 86 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--B-----TTTBEECCHHHHHH
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--C-----CCeEEEecHHHhhh
Confidence 45689999999999999999999999999999999 9983 444433 1 23456665443333
Q ss_pred CCHHHHHHH----hccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHH-HHH-HHHhcCCCEEEEcccCCCC
Q psy6612 99 LSIRETFRY----YGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRI-SFA-VSLLHNPKLLILDEPTVGL 172 (291)
Q Consensus 99 ltv~enl~~----~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv-~iA-ral~~~p~llllDEPtsgL 172 (291)
++..+++.. ....++.+.. .+.++++.-..--.+-.+. -....+++. .-+ ..++..|+..+++|++.+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~~~~vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R 161 (231)
T 3lnc_A 87 LCSNGEIIEHAEVFGNFYGVPRK----NLEDNVDKGVSTLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLCGR 161 (231)
T ss_dssp HHHTTCEEEEEEETTEEEEEECT----THHHHHHHTCEEEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC----
T ss_pred hhhcCceehhhhhccccCCCCHH----HHHHHHHcCCeEEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHc
Confidence 333322221 1111222222 2233333311000111000 011123333 111 2345677888899999999
Q ss_pred CHHHHHHHHHHHHHhHh-----CCcEEEEEccCHhHH
Q psy6612 173 DPILSQIIWDRLKEMAL-----NGKTIIITTHYIEEA 204 (291)
Q Consensus 173 D~~~~~~i~~~l~~l~~-----~g~tii~~tHd~~~~ 204 (291)
|..+...+.+.|..... ....+++++|+++.+
T Consensus 162 ~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~ 198 (231)
T 3lnc_A 162 RADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198 (231)
T ss_dssp ----------CHHHHHHHHTTGGGSSEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHH
Confidence 98888887777765431 123555556665555
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-18 Score=148.75 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=83.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC-------------CCccEEEECCEecCeE------EEEcCCCCCCCCCCHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT-------------LDAGTIKLSFRQISDI------GYMPQELALHGELSIRE 103 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~-------------p~~G~I~~~g~~~~~i------g~v~q~~~l~~~ltv~e 103 (291)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++..+ ..+.|+..++. .++.+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~-~~~~~ 78 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEH-AEFSG 78 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEE-EEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEee-eeecC
Confidence 5799999999999999999999999875 56665 344322100 00011111110 11111
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHH---HHHHH-HHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 104 TFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRR---ISFAV-SLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 104 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQr---v~iAr-al~~~p~llllDEPtsgLD~~~~~~ 179 (291)
.+++.+.++ +.++++.-.....+..+ .|-++. -..|+ +++.+|++++|||||+++|..+...
T Consensus 79 ------n~~g~~~~~----i~~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~ 144 (198)
T 1lvg_A 79 ------NLYGTSKEA----VRAVQAMNRICVLDVDL----QGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEES 144 (198)
T ss_dssp ------EEEEEEHHH----HHHHHHTTCEEEEECCH----HHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHH
T ss_pred ------ccCCCCHHH----HHHHHHcCCcEEEECCH----HHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHH
Confidence 223333322 33333321110000000 111111 11566 7888999999999999999999999
Q ss_pred HHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 180 IWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 180 i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
+.+.|.++.++ +.++| .. ..+|+++++++
T Consensus 145 i~~~l~~~~~~----~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 145 LAKRLAAARTD----MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHH----TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHH----HHHhh--cc-CCceEEEECCC
Confidence 99998887542 24456 22 45899887764
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.4e-15 Score=137.63 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=68.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE---CCEecC--------eEEEEcCCCCCCC----CCCHHHH
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL---SFRQIS--------DIGYMPQELALHG----ELSIRET 104 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~---~g~~~~--------~ig~v~q~~~l~~----~ltv~en 104 (291)
+++.+|++++|+||||||||||+|+|+|+.+|+.|+|.+ +|+... .+||++|.|.+.. .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 678899999999999999999999999999999999998 776541 1699999998765 6789 88
Q ss_pred HH--Hhc--------cccC-CChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHH
Q psy6612 105 FR--YYG--------YMFD-MTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRR 149 (291)
Q Consensus 105 l~--~~~--------~~~~-~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQr 149 (291)
+. |.. .+.+ ....+...++.++++.+++.. ..+...+|+.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 83 220 0111 112223456888999999975 445566777788873
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-14 Score=131.15 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=83.8
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCCh
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTD 116 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~ 116 (291)
.+++..++|++++|+|||||||||+++.|++.+.++.|+|.+.+.+..+. ...+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~-------------~a~e------------- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA-------------AAIE------------- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH-------------HHHH-------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH-------------HHHH-------------
Confidence 35666789999999999999999999999999999888888866543211 0111
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHH---HHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 117 DQIETRSKEILKLLELPPAKKIVGALSGGQQRRI---SFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 117 ~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv---~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
.+..+++..+++. +..+|+|+.|++ ++++|+..+|+++|+|||.. ......+++.+.++.
T Consensus 150 -----qL~~~~~~~gl~~----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 150 -----QLKIWGERVGATV----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp -----HHHHHHHHHTCEE----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCcE----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 1223445556542 335789999999 99999999999999999974 344555666665553
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3e-13 Score=123.94 Aligned_cols=140 Identities=19% Similarity=0.260 Sum_probs=93.1
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
.+|++++++|||||||||+++.|++.+.+++| .++.++.+++. ..++.+.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G---------~~V~lv~~D~~---r~~a~eqL~~~~------------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH---------KKIAFITTDTY---RIAAVEQLKTYA------------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------CCEEEEECCCS---STTHHHHHHHHH-------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CEEEEEecCcc---cchHHHHHHHHH-------------
Confidence 47999999999999999999999999988778 34666666652 235555554322
Q ss_pred HHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH---hCCcEEEE-Ec
Q psy6612 123 SKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA---LNGKTIII-TT 198 (291)
Q Consensus 123 ~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~---~~g~tii~-~t 198 (291)
+..+++... ..+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++.+-+. ..+.++++ +|
T Consensus 158 -----~~~gl~~~~----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 158 -----ELLQAPLEV----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp -----TTTTCCCCB----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred -----HhcCCCeEe----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 223332210 012 2334556664 4999999999 99999877666655544433 12334555 59
Q ss_pred cCHhHHhh-hCeEEEEeCCEEEEE
Q psy6612 199 HYIEEAKG-AHNIGLMRDDQYIGR 221 (291)
Q Consensus 199 Hd~~~~~~-~d~i~~l~~G~i~~~ 221 (291)
|..+.+.. ++++..+..+.++..
T Consensus 224 ~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 224 AKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp BCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEEe
Confidence 99888865 787766676777653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-14 Score=127.82 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=92.5
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHH
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIR 102 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~ 102 (291)
+++++.|+... ++++|+ +|++++++|+|||||||+++.|++++.+..|+|.+.+.+.++.+ +.
T Consensus 80 ~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~------------~~- 142 (295)
T 1ls1_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA------------AR- 142 (295)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH------------HH-
T ss_pred HHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh------------HH-
Confidence 45666676543 788888 99999999999999999999999999998899988765542200 00
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc-CCCCCHHHHHHHH
Q psy6612 103 ETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP-TVGLDPILSQIIW 181 (291)
Q Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP-tsgLD~~~~~~i~ 181 (291)
+.+ ..+.+..+++..... ...+..+.+|.+++++...+++++|+||| ++++|......+.
T Consensus 143 ~ql------------------~~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~ 203 (295)
T 1ls1_A 143 EQL------------------RLLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELA 203 (295)
T ss_dssp HHH------------------HHHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHH
T ss_pred HHH------------------HHhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHH
Confidence 100 012233455421000 01233445789999998899999999999 9999998888888
Q ss_pred HHHHHhH
Q psy6612 182 DRLKEMA 188 (291)
Q Consensus 182 ~~l~~l~ 188 (291)
++...+.
T Consensus 204 ~~~~~~~ 210 (295)
T 1ls1_A 204 RLKEVLG 210 (295)
T ss_dssp HHHHHHC
T ss_pred HHhhhcC
Confidence 8777653
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-14 Score=122.96 Aligned_cols=65 Identities=20% Similarity=0.329 Sum_probs=48.4
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+... ..++|+||++..++.+++.+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 67889999999999999999999999999963 466666443 247899998877776666665543
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-14 Score=141.41 Aligned_cols=162 Identities=11% Similarity=0.105 Sum_probs=104.0
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEEECCEecCeEEEEcCCCCCCCCC--CHHHHHHHhcccc
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVG--RNTLDAGTIKLSFRQISDIGYMPQELALHGEL--SIRETFRYYGYMF 112 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l--tv~enl~~~~~~~ 112 (291)
.+++++.++..+.|.|++||||||++++|.. +..++.|++.+.+.+.+... ++....+|.+ +|.++........
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e--l~~~~~lPhl~~~Vvtd~~~a~~~L 236 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE--LSVYEGIPHLLTEVVTDMKDAANAL 236 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG--GGGGTTCTTBSSSCBCSHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh--hhhhccCCcccceeecCHHHHHHHH
Confidence 4778889999999999999999999999876 56777788887666654321 1211112221 1222221111111
Q ss_pred CCChHHHHHHHHHHHHHcCCCCC---C-CCcCcCChhHHHHH----------HHHHHHhcCCC-EEEEcccCCCCCHHHH
Q psy6612 113 DMTDDQIETRSKEILKLLELPPA---K-KIVGALSGGQQRRI----------SFAVSLLHNPK-LLILDEPTVGLDPILS 177 (291)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~---~-~~~~~LSgGqkQrv----------~iAral~~~p~-llllDEPtsgLD~~~~ 177 (291)
.....+++++. +++...|+... + +....+|+||+|+. .+|+++...|. ++++||+++-+|.. .
T Consensus 237 ~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~ 314 (512)
T 2ius_A 237 RWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-G 314 (512)
T ss_dssp HHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-H
T ss_pred HHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-h
Confidence 11134555554 67888887542 2 22346899998763 35667788898 89999999988843 3
Q ss_pred HHHHHHHHHhH----hCCcEEEEEccCHh
Q psy6612 178 QIIWDRLKEMA----LNGKTIIITTHYIE 202 (291)
Q Consensus 178 ~~i~~~l~~l~----~~g~tii~~tHd~~ 202 (291)
..+.+.|.+++ +-|.++|++||+++
T Consensus 315 ~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 315 KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 45566666553 23789999999987
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-13 Score=131.93 Aligned_cols=51 Identities=18% Similarity=0.143 Sum_probs=48.5
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 5689999999999 99999999999999999999999999999999999765
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=110.89 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=87.4
Q ss_pred eeEeee-eEEEeCCcEEEEECCCCccHHHHHH-HHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 33 VVLKGL-NLNVPENKIYGLLGPSGCGKTTLLN-CIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 33 ~~L~~v-sl~i~~Gei~~liGpNGaGKSTLl~-~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
+.|+.+ .--+++|++++|.||||||||||+. ++.+..+...+.+++++. .+..+......
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-----------------~~~~~~~~~~~- 71 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-----------------EHPVQVRQNMA- 71 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-----------------SCHHHHHHHHH-
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-----------------CCHHHHHHHHH-
Confidence 345665 5678999999999999999999964 445544433333333322 12222221111
Q ss_pred ccCCChHHHHHHHHHHHH-------HcCC-CCCCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCC--CHHHHH
Q psy6612 111 MFDMTDDQIETRSKEILK-------LLEL-PPAKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGL--DPILSQ 178 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~-------~~~l-~~~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgL--D~~~~~ 178 (291)
..+......... .-+. .++. ...+.....-+....+....++.++ .+|+++++|+|++.+ |+....
T Consensus 72 ~~g~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~ 149 (247)
T 2dr3_A 72 QFGWDVKPYEEK--GMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMAR 149 (247)
T ss_dssp TTTCCCHHHHHH--TSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHH
T ss_pred HcCCCHHHHhhC--CcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHH
Confidence 112211110000 0000 0010 0001111111222333333344443 589999999999988 665555
Q ss_pred HHHHHHHHhH-hCCcEEEEEccCHhH--------Hhh-hCeEEEEeC
Q psy6612 179 IIWDRLKEMA-LNGKTIIITTHYIEE--------AKG-AHNIGLMRD 215 (291)
Q Consensus 179 ~i~~~l~~l~-~~g~tii~~tHd~~~--------~~~-~d~i~~l~~ 215 (291)
+++..+.+++ +.|.||++++|.... +.. ||.++.|+.
T Consensus 150 ~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 150 SIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 6666666654 668999999998765 334 899999875
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=124.14 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=110.6
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh-cc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY-GY 110 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~-~~ 110 (291)
.+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|+.-+ ++..+...-. +.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g---------~~Vl~~s~E------~s~~~l~~r~~~~ 254 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN---------ENVAIFSLE------MSAQQLVMRMLCA 254 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS---------CCEEEEESS------SCHHHHHHHHHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC---------CcEEEEECC------CCHHHHHHHHHHH
Confidence 4578888888999999999999999999999999987665444 123333322 2332222110 00
Q ss_pred cc----------CCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC----
Q psy6612 111 MF----------DMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD---- 173 (291)
Q Consensus 111 ~~----------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD---- 173 (291)
.. .+. .+...++.++++.++... .-.....+|.++.+ +.||.++ ++|+++++|+++...+
T Consensus 255 ~~~~~~~~l~~g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 255 EGNINAQNLRTGKLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTCCHHHHHTSCCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HcCCCHHHHhcCCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 00 122 223445555666554332 11224579999886 5666665 7899999999998774
Q ss_pred ----HHHHHHHHHHHHHhHh-CCcEEEEEcc---------C--Hh--------HHhh-hCeEEEEeCCEE
Q psy6612 174 ----PILSQIIWDRLKEMAL-NGKTIIITTH---------Y--IE--------EAKG-AHNIGLMRDDQY 218 (291)
Q Consensus 174 ----~~~~~~i~~~l~~l~~-~g~tii~~tH---------d--~~--------~~~~-~d~i~~l~~G~i 218 (291)
......+.+.|+.+++ .|.+||+++| + +. .++. ||.|++|..++.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 3344677777888874 4899999999 3 32 3444 999999987643
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-15 Score=137.20 Aligned_cols=130 Identities=15% Similarity=0.224 Sum_probs=92.0
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQE 92 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~ 92 (291)
++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++.++ ..++++||.
T Consensus 52 l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 52 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 345556676777899999999999 99999999999999999999875 78999887654 236677776
Q ss_pred CC-CCCCCCHHHHHHHhccccCC----ChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 93 LA-LHGELSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 93 ~~-l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
.. ..+.+++.|++......... ...+..+.+.++ +.+|||||+||+.+++|+..+|++ +|+
T Consensus 128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~lsgg~~~~~~i~~a~t~~p~~--ld~ 193 (278)
T 1iy2_A 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI--LDP 193 (278)
T ss_dssp HHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH------------HHHHTTCCTTCCEEEEEEESCTTS--SCH
T ss_pred HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH------------HHHHhCCCCCCCEEEEEecCCchh--CCH
Confidence 53 45566777777432221110 111122222222 356899999999999999999987 676
Q ss_pred cC
Q psy6612 168 PT 169 (291)
Q Consensus 168 Pt 169 (291)
+.
T Consensus 194 ~l 195 (278)
T 1iy2_A 194 AL 195 (278)
T ss_dssp HH
T ss_pred hH
Confidence 64
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-15 Score=135.54 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=91.7
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEEEcCC
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGYMPQE 92 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~v~q~ 92 (291)
++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.+.++|.++ ..++++||.
T Consensus 28 l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 28 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 455566676677899999999999 99999999999999999999875 78899887654 235667776
Q ss_pred CC-CCCCCCHHHHHHHhccccCC----ChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 93 LA-LHGELSIRETFRYYGYMFDM----TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 93 ~~-l~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
.. ..+.+++.|++......... ...+..+.+.++ ..+|||||+||+.+++|+..+|++ +|+
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~l------------l~~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL------------LVEMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHHHHH------------HHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHH------------HHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence 43 44556666776432221110 111222222222 346889999999999999999987 687
Q ss_pred cCC
Q psy6612 168 PTV 170 (291)
Q Consensus 168 Pts 170 (291)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.3e-14 Score=139.48 Aligned_cols=161 Identities=14% Similarity=0.095 Sum_probs=104.8
Q ss_pred EEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCc-cEEEECCEec----CeEEEEcCCC------
Q psy6612 25 AYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA-GTIKLSFRQI----SDIGYMPQEL------ 93 (291)
Q Consensus 25 l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~-G~I~~~g~~~----~~ig~v~q~~------ 93 (291)
+..-||...+++++++.+.+|+.++|+||||||||||+++|++++++.. |.+.+++.+. ..++++|+..
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e 119 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHH
T ss_pred cceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHH
Confidence 3444678889999999999999999999999999999999999999887 7888876654 3578887653
Q ss_pred ----------------CCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCC-CCCCCCcCcCChhHHHHHHHHHHH
Q psy6612 94 ----------------ALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLEL-PPAKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 94 ----------------~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~LSgGqkQrv~iAral 156 (291)
..+..+++.+|+..... ................+.+|. .......+.+|+|++|++..++..
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~-~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~ 198 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNC-GRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIH 198 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCT-TCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHH
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccc-cCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceee
Confidence 11111222222210000 000000000000011223332 112233467999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
..++.+|++||... |++..+..+++.|.+-
T Consensus 199 ~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 199 RAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp HTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred ecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 99999999999988 8999999999998753
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-12 Score=109.67 Aligned_cols=134 Identities=16% Similarity=0.158 Sum_probs=76.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC-----------CccEEEECCEecCeEEEEcCCCCC--CCCCCHHHHHHHh---cc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTL-----------DAGTIKLSFRQISDIGYMPQELAL--HGELSIRETFRYY---GY 110 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p-----------~~G~I~~~g~~~~~ig~v~q~~~l--~~~ltv~enl~~~---~~ 110 (291)
.++|+|+||||||||++.++|...+ ++|+|.++|+++.- - +.+.+.. +..+. .....-. ..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~-~-i~Dt~g~~~~~~~~-~~~~~~~~~~i~ 107 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA-Q-IWDTAGLERYRAIT-SAYYRGAVGALL 107 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEE-E-EEEECSCCSSSCCC-HHHHTTCCEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEE-E-EEECCCCcchhhhh-HHHhhcCCEEEE
Confidence 6899999999999999999998765 57899999976421 1 1111111 11111 1111100 00
Q ss_pred ccCCChHHHHHHHHHHH----HHcCCC----C-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHH
Q psy6612 111 MFDMTDDQIETRSKEIL----KLLELP----P-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l----~~~~l~----~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~ 181 (291)
.+........+.+..++ +..... . .++ ..|..-..+.+.+|++++.+|+++++| ||++|..+..+++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~ 183 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAF 183 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHH
Confidence 11111111111111111 111100 0 011 112222234578899999999999999 9999999999999
Q ss_pred HHHHHh
Q psy6612 182 DRLKEM 187 (291)
Q Consensus 182 ~~l~~l 187 (291)
+.|.+.
T Consensus 184 ~~l~~~ 189 (191)
T 1oix_A 184 QTILTE 189 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988763
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-13 Score=119.95 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=42.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.|+++|+...|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEc
Confidence 3667777655532 566666 89999999999999999999999999999999998764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.21 E-value=9.1e-12 Score=116.57 Aligned_cols=139 Identities=21% Similarity=0.290 Sum_probs=82.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+++|+++.|.||||||||||+..++.......|. +.|+.-+..+.+ . .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~----------vlyi~~E~~~~~---~--~---------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI----------AAFIDAEHALDP---E--Y---------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC----------EEEEESSCCCCH---H--H----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe----------EEEEECCCCcCH---H--H----------------
Confidence 57899999999999999999987777544332332 344443322110 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCc-CcCChhHHHHHHHHHHHhcC--CCEEEEcccCCCC----------CH---HHHHHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLLHN--PKLLILDEPTVGL----------DP---ILSQIIWDRL 184 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~-~~LSgGqkQrv~iAral~~~--p~llllDEPtsgL----------D~---~~~~~i~~~l 184 (291)
.+.+|+...+-.+ ...+. .|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.+
T Consensus 106 ------a~~lG~~~~~l~i~~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 106 ------AKKLGVDTDSLLVSQPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp ------HHHTTCCGGGCEEECCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred ------HHHcCCCHHHeEEecCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 1112222110001 11222 3456778888755 9999999999998 33 2223445555
Q ss_pred HHh----HhCCcEEEEEccCHhH----------------Hhh-hCeEEEEeCCEE
Q psy6612 185 KEM----ALNGKTIIITTHYIEE----------------AKG-AHNIGLMRDDQY 218 (291)
Q Consensus 185 ~~l----~~~g~tii~~tHd~~~----------------~~~-~d~i~~l~~G~i 218 (291)
+++ ++.|.|||+++|.... ++. ||.++.++.+++
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeee
Confidence 555 3558999999996431 344 888888876544
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.8e-11 Score=113.88 Aligned_cols=134 Identities=18% Similarity=0.266 Sum_probs=84.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC-----------CCccEEEECCEecC---eEEEEcCCCCCCCCCCHHHH---HHHh-
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT-----------LDAGTIKLSFRQIS---DIGYMPQELALHGELSIRET---FRYY- 108 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~-----------p~~G~I~~~g~~~~---~ig~v~q~~~l~~~ltv~en---l~~~- 108 (291)
+++|+|++|||||||++.++|... |+.|.+.++|.++. ..|++.+.+. ..+... +...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~----~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPP----QIVDAFFVTLSEAK 256 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCG----GGHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCH----HHHHHHHHHHHHHH
Confidence 499999999999999999999876 67799999986541 2343333221 011111 1110
Q ss_pred -----ccccCCC--h---HHHHHHHHHHHHHcCCCC-C----CCCcCcCChhHHHHHHHH----HHH-hcCCCEEEEccc
Q psy6612 109 -----GYMFDMT--D---DQIETRSKEILKLLELPP-A----KKIVGALSGGQQRRISFA----VSL-LHNPKLLILDEP 168 (291)
Q Consensus 109 -----~~~~~~~--~---~~~~~~~~~~l~~~~l~~-~----~~~~~~LSgGqkQrv~iA----ral-~~~p~llllDEP 168 (291)
......+ . .+....+.++++.+++.. . ..++..+|+|++|++.++ +++ ..+|++ +|
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EE
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EE
Confidence 0011111 1 122233456677776532 1 244677898999988887 665 444554 89
Q ss_pred CCCCCHHHHHHHHHHHHHhH
Q psy6612 169 TVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 169 tsgLD~~~~~~i~~~l~~l~ 188 (291)
+|++|..+...+++.|.++.
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHh
Confidence 99999999999999998865
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=7.9e-11 Score=100.06 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~ 188 (291)
...|++++.+|+++++| ||++|+.+...+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887653
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-12 Score=123.44 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=90.8
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE-CCEecC---eEEEEcCCCC-CCCCCCHHHHHHH
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL-SFRQIS---DIGYMPQELA-LHGELSIRETFRY 107 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~-~g~~~~---~ig~v~q~~~-l~~~ltv~enl~~ 107 (291)
.+++++|+++++|++++|+||||||||||+++|+|. .+|++.. ++..-+ .+|++||... ++++.+....+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~-- 231 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE-- 231 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH--
Confidence 578999999999999999999999999999999985 4687765 211111 3667777653 23333321110
Q ss_pred hccccCCCh-HH--HHHHHHHHHHH---------------cCCCC--CCCCcCcCChhHHHHHHHHHHHhcCCCEEE-Ec
Q psy6612 108 YGYMFDMTD-DQ--IETRSKEILKL---------------LELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLI-LD 166 (291)
Q Consensus 108 ~~~~~~~~~-~~--~~~~~~~~l~~---------------~~l~~--~~~~~~~LSgGqkQrv~iAral~~~p~lll-lD 166 (291)
..+... .. ....+...++- .-+.. .+.....+++|++||+..+.+++..|++++ ||
T Consensus 232 ---~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd 308 (377)
T 1svm_A 232 ---SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 308 (377)
T ss_dssp ---TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred ---HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEe
Confidence 000000 00 01122333320 00111 244567799999999999888899999988 99
Q ss_pred ccCCCCCHHHHHHHHHHHHHhHhCCcEE
Q psy6612 167 EPTVGLDPILSQIIWDRLKEMALNGKTI 194 (291)
Q Consensus 167 EPtsgLD~~~~~~i~~~l~~l~~~g~ti 194 (291)
+|+. .+++++.++|.++
T Consensus 309 ~~~~-----------~l~~RL~~Rg~t~ 325 (377)
T 1svm_A 309 RSEF-----------LLEKRIIQSGIAL 325 (377)
T ss_dssp TCTH-----------HHHTTCTTCHHHH
T ss_pred CCHH-----------HHHHHHHHcCccH
Confidence 9987 3455665555543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-10 Score=94.74 Aligned_cols=117 Identities=12% Similarity=0.115 Sum_probs=70.0
Q ss_pred EeeE--eeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE---------ECCE------ecCeEEEEcCCCC
Q psy6612 32 HVVL--KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK---------LSFR------QISDIGYMPQELA 94 (291)
Q Consensus 32 ~~~L--~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~---------~~g~------~~~~ig~v~q~~~ 94 (291)
...+ +++++++.+| +++|+||||||||||+++|++++.+..|... ..|. ....|.++||++.
T Consensus 12 f~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 12 FKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp BGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 3456 7899999999 9999999999999999999999888766432 2221 1245889999864
Q ss_pred CC--C---CCCHHHHHHHhc-cccCC-ChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHH
Q psy6612 95 LH--G---ELSIRETFRYYG-YMFDM-TDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRIS 151 (291)
Q Consensus 95 l~--~---~ltv~enl~~~~-~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~ 151 (291)
-. + .+++...+.-.. ..+.. ........+.+++..+++...+ +.-++.|+.+++.
T Consensus 91 ~~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~--~~~~~qg~~~~l~ 152 (182)
T 3kta_A 91 RGFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG--YNIVLQGDITKFI 152 (182)
T ss_dssp CCSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC--TTEECTTCTTHHH
T ss_pred cccccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC--CEEEEcccHHHHH
Confidence 21 1 122211110000 00000 0111234577788888886422 2346677766654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-11 Score=102.49 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=33.3
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.+..+-.++.++|++++|+||||||||||+++|++.+ |.+.++|.++
T Consensus 17 ~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 17 NLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 3444445677899999999999999999999999976 8899988765
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-09 Score=110.12 Aligned_cols=137 Identities=18% Similarity=0.171 Sum_probs=89.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+..|+.+.++||+||||||++.++++...+..| .| ..+.++. |.-.....+
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g---~~ilvl~------P~r~La~q~---------------- 156 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN---TQVACTQ------PRRVAAMSV---------------- 156 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT---CEEEEEE------SCHHHHHHH----------------
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC---ceEEecC------chHHHHHHH----------------
Confidence 457899999999999999999988765544442 11 1122211 100000000
Q ss_pred HHHHHHHHcCC------------C---CCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHH
Q psy6612 122 RSKEILKLLEL------------P---PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLK 185 (291)
Q Consensus 122 ~~~~~l~~~~l------------~---~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~ 185 (291)
+..+.+.++. + ..+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.
T Consensus 157 -~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~ 235 (773)
T 2xau_A 157 -AQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVV 235 (773)
T ss_dssp -HHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHH
Confidence 0011111111 0 1234566789999999999999999999999999997 999887777766666
Q ss_pred HhHhCCcEEEE-EccCHhHHhh-hC
Q psy6612 186 EMALNGKTIII-TTHYIEEAKG-AH 208 (291)
Q Consensus 186 ~l~~~g~tii~-~tHd~~~~~~-~d 208 (291)
.......+|++ +||+.+.+.. ++
T Consensus 236 ~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 236 KRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp HHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred HhCCCceEEEEeccccHHHHHHHhc
Confidence 65544567888 4999887754 54
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-10 Score=104.52 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=36.5
Q ss_pred ceEEEEeE-EEEE-CCEeeEeeeeEEEeC---CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 18 HSVAVTSA-YKKI-GNHVVLKGLNLNVPE---NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 18 ~~l~~~~l-~~~~-~~~~~L~~vsl~i~~---Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+|+++|+ +++| ++.++|+++||++.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46888999 9999 778899999999999 9999999999999999999999865
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.4e-09 Score=102.03 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=31.8
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
-+++|+++.|.||||||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 488999999999999999999999998877666654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-09 Score=100.18 Aligned_cols=123 Identities=14% Similarity=0.213 Sum_probs=80.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
..-.++++|+||+|||||++.++|.. +..|.. .+... ..++.+.++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~--~~~t~~~~~~~~~~~~~---------------------------- 214 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK-PEIASY--PFTTRGINVGQFEDGYF---------------------------- 214 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC-CEEECC--TTCSSCEEEEEEEETTE----------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCC--CCeeeceeEEEEEecCc----------------------------
Confidence 34589999999999999999999865 211111 00000 01222222100
Q ss_pred HHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEc-ccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEc--
Q psy6612 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILD-EPTVGLDPILSQIIWDRLKEMALNGKTIIITT-- 198 (291)
Q Consensus 123 ~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllD-EPtsgLD~~~~~~i~~~l~~l~~~g~tii~~t-- 198 (291)
-+..++... .+.++.++|+|++|++. +.+...++-++++| +|.+++|......+++.+.+... +..+|++.
T Consensus 215 ---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK 289 (357)
T 2e87_A 215 ---RYQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINK 289 (357)
T ss_dssp ---EEEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred ---eEEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 011112222 34567789999999876 66666778889999 99999999998888888877643 67788887
Q ss_pred cCHh
Q psy6612 199 HYIE 202 (291)
Q Consensus 199 Hd~~ 202 (291)
||+.
T Consensus 290 ~Dl~ 293 (357)
T 2e87_A 290 IDVA 293 (357)
T ss_dssp TTTC
T ss_pred cccC
Confidence 8874
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-10 Score=96.90 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=77.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~ 126 (291)
+++|+|||||||||+.++|+++ |...+++..+ ..- ...... ..+.++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------------------~~~---~~~~~~----~~~~~i 50 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------------------ARE---VVAKDS----PLLSKI 50 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------------------HHH---TTCSSC----HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------------------HHH---HccCCh----HHHHHH
Confidence 6899999999999999999983 5444433211 000 000000 123455
Q ss_pred HHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH--
Q psy6612 127 LKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-- 204 (291)
Q Consensus 127 l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~-- 204 (291)
.+.+|.... .|.|+.+|..+++.+..+|+.+..+ .+.++|..+..+.+.+... .+.++|+.+|.+.+.
T Consensus 51 ~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~ 120 (206)
T 1jjv_A 51 VEHFGAQIL------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKL 120 (206)
T ss_dssp HHHHCTTCC------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTC
T ss_pred HHHhCHHHh------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCc
Confidence 666664322 3678999999999888888754333 4456777777766665543 256889999988765
Q ss_pred hh-hCeEEEEeC
Q psy6612 205 KG-AHNIGLMRD 215 (291)
Q Consensus 205 ~~-~d~i~~l~~ 215 (291)
.. ||.+++++-
T Consensus 121 ~~~~d~vi~l~~ 132 (206)
T 1jjv_A 121 TALCDRILVVDV 132 (206)
T ss_dssp GGGCSEEEEEEC
T ss_pred HhhCCEEEEEEC
Confidence 34 899998863
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.8e-11 Score=100.23 Aligned_cols=61 Identities=18% Similarity=0.089 Sum_probs=48.6
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE--EECCEecC
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI--KLSFRQIS 84 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I--~~~g~~~~ 84 (291)
+|+++.++...+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ +++|.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 567778888888899999999999999999999999999999999987 67888 88876653
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-09 Score=102.66 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=77.0
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
...++++++.+++| +.|+||+|+|||||+++|++.... + +-++ +..+.+
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~---f~~i----------s~~~~~------ 86 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------P---FFHI----------SGSDFV------ 86 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------C---EEEE----------EGGGTT------
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------C---eeeC----------CHHHHH------
Confidence 34566777778888 789999999999999999984310 0 1011 000000
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEccc----------CCCCCHHHHHHHH
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEP----------TVGLDPILSQIIW 181 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEP----------tsgLD~~~~~~i~ 181 (291)
...++ ++++++|..+++|....|.+|++||+ ++|.|+.....+.
T Consensus 87 ------------------------~~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~ 140 (476)
T 2ce7_A 87 ------------------------ELFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLN 140 (476)
T ss_dssp ------------------------TCCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHH
T ss_pred ------------------------HHHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHH
Confidence 00011 26788899999999999999999999 4467777666666
Q ss_pred HHHHHhH----hCCcEEEEEccCHhHH
Q psy6612 182 DRLKEMA----LNGKTIIITTHYIEEA 204 (291)
Q Consensus 182 ~~l~~l~----~~g~tii~~tHd~~~~ 204 (291)
+++..+. ..+..||.+||+++.+
T Consensus 141 ~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 141 QLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHHhccCCCCCEEEEEecCChhhh
Confidence 7776653 2467899999998654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-10 Score=100.67 Aligned_cols=52 Identities=25% Similarity=0.332 Sum_probs=39.0
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH---cCCCCCccEEE--------ECCEec
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV---GRNTLDAGTIK--------LSFRQI 83 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~---gl~~p~~G~I~--------~~g~~~ 83 (291)
+....++++.+ ++|++++|+|||||||||++++|+ |+..|++|.+. .+|.++
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~ 76 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDI 76 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCS
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCc
Confidence 33344555554 789999999999999999999999 99999999998 777654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=9e-11 Score=109.66 Aligned_cols=164 Identities=18% Similarity=0.202 Sum_probs=86.9
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc--CCCCCccEEEECCEec---------CeEEEEcCCCCC-CCCC
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG--RNTLDAGTIKLSFRQI---------SDIGYMPQELAL-HGEL 99 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g--l~~p~~G~I~~~g~~~---------~~ig~v~q~~~l-~~~l 99 (291)
..+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.....+ ...+..++.+.. +.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 468999999999 999999999999999999999 5677777665433221 123333332211 1110
Q ss_pred -CHHHHH-----HHhccccCCChHHHHHHH----HHHHHHcCCCCC-C-CCcCcCChhHHHHHHHHHHHhcCCCEEEEcc
Q psy6612 100 -SIRETF-----RYYGYMFDMTDDQIETRS----KEILKLLELPPA-K-KIVGALSGGQQRRISFAVSLLHNPKLLILDE 167 (291)
Q Consensus 100 -tv~enl-----~~~~~~~~~~~~~~~~~~----~~~l~~~~l~~~-~-~~~~~LSgGqkQrv~iAral~~~p~llllDE 167 (291)
.+.+.+ ...+...+.+.+...-.+ ..-+..++++.. + ...++.++.++|+..++++.+.+|+++|+.-
T Consensus 101 ~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv 180 (360)
T 3t34_A 101 AAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAI 180 (360)
T ss_dssp HHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEe
Confidence 011111 000000000000000000 000111122221 1 1123467889999999999999999888875
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhCC-cEEEEEcc
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALNG-KTIIITTH 199 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~g-~tii~~tH 199 (291)
..+..|... ...+++++++...| .+|+++|.
T Consensus 181 ~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 181 SPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred ecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 444455443 45566777776555 57777776
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-11 Score=119.77 Aligned_cols=126 Identities=17% Similarity=0.234 Sum_probs=86.5
Q ss_pred EEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eEEEEcCCCC-CC
Q psy6612 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DIGYMPQELA-LH 96 (291)
Q Consensus 27 ~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ig~v~q~~~-l~ 96 (291)
..|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++. .+..+||... ..
T Consensus 48 ~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~ 123 (499)
T 2dhr_A 48 EFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 123 (499)
T ss_dssp HHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS
T ss_pred HHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 3344556788999999999 99999999999999999999874 788888886641 2556677653 34
Q ss_pred CCCCHHHHHHHhccccC----CChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 97 GELSIRETFRYYGYMFD----MTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 97 ~~ltv~enl~~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
+.+.+.|++.......+ ...++..+.+.+++. +||||++|+..+++|...+|++ |||+..
T Consensus 124 p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 124 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 45555566543222111 012222333334433 4788888888899999999987 888875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-11 Score=110.92 Aligned_cols=137 Identities=11% Similarity=0.055 Sum_probs=79.8
Q ss_pred EEEECCEeeEeeeeEEEeCCc------EEEEECCCCccHHHHHHHHHcCCC--CCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 26 YKKIGNHVVLKGLNLNVPENK------IYGLLGPSGCGKTTLLNCIVGRNT--LDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 26 ~~~~~~~~~L~~vsl~i~~Ge------i~~liGpNGaGKSTLl~~i~gl~~--p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
+..|+++.+|++++..+.+++ ++||+||||||||||+++|++++. |+.|. ++++.++...++
T Consensus 67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~----------v~~i~~D~f~~~ 136 (321)
T 3tqc_A 67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN----------VEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC----------EEEEEGGGGBCC
T ss_pred HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe----------EEEEeecccccc
Confidence 344667778888888888887 999999999999999999999987 44444 445555554333
Q ss_pred CCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 98 ELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 98 ~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
. ...+.... ...++.+.........+.++.+.-....-..-.+|.+..+|+.-+...+..|+++|++.|..-.|+
T Consensus 137 ~-~~l~~~~~-~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 137 N-AKLEKQGL-MKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp H-HHHHHTTC-GGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred h-hhhhhHHH-HhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 2 11111100 011222221112233334433321110112223455555555433445678999999999987765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.1e-09 Score=87.37 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=30.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG 74 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G 74 (291)
+++.+|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-08 Score=92.45 Aligned_cols=130 Identities=18% Similarity=0.170 Sum_probs=85.7
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++.......+ .+.|+.- .++..+..
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~----------~Vl~fSl------Ems~~ql~------ 90 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR----------GVAVFSL------EMSAEQLA------ 90 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------EEEEEES------SSCHHHHH------
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC----------eEEEEeC------CCCHHHHH------
Confidence 3456777667999999999999999999999887765432222 2344331 23443322
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hC
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LN 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~ 190 (291)
.++......+++... .-+.||.++.+|+..|...+.+++++|.|+|... ...+...+++++ +.
T Consensus 91 ---------~Rlls~~~~v~~~~l--~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~ 154 (338)
T 4a1f_A 91 ---------LRALSDLTSINMHDL--ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQH 154 (338)
T ss_dssp ---------HHHHHHHHCCCHHHH--HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHhhCCCHHHH--hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhc
Confidence 222222221221111 1247999999999999999999999999999754 336666777775 44
Q ss_pred -CcEEEEEcc
Q psy6612 191 -GKTIIITTH 199 (291)
Q Consensus 191 -g~tii~~tH 199 (291)
|..+|++-|
T Consensus 155 gg~~lIVIDy 164 (338)
T 4a1f_A 155 KELGIAFIDY 164 (338)
T ss_dssp TTEEEEEEEE
T ss_pred CCCCEEEEec
Confidence 678888764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.65 E-value=7.4e-08 Score=89.18 Aligned_cols=126 Identities=17% Similarity=0.081 Sum_probs=74.3
Q ss_pred CCc--EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 44 ENK--IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 44 ~Ge--i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
.+. .+.|.||+|+|||||++.+++...+..+ ..+.++.-.. ..+..+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~---------~~~~~i~~~~----~~~~~~~----------------- 90 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT---------ARFVYINGFI----YRNFTAI----------------- 90 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC---------CEEEEEETTT----CCSHHHH-----------------
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC---------eeEEEEeCcc----CCCHHHH-----------------
Confidence 456 8999999999999999999998766431 1122222111 1122221
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHH-HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh---CCcEEEEE
Q psy6612 122 RSKEILKLLELPPAKKIVGALSGGQQRRISFAVS-LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL---NGKTIIIT 197 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAra-l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~---~g~tii~~ 197 (291)
+..++..++... +....+.++......... -..+|.++++||+... |+.....+.+.+.++.. .+.++|++
T Consensus 91 -~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 91 -IGEIARSLNIPF---PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp -HHHHHHHTTCCC---CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred -HHHHHHHhCccC---CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 112233333321 111233333222111111 1245889999999876 88888888888876654 57899999
Q ss_pred ccCHhHH
Q psy6612 198 THYIEEA 204 (291)
Q Consensus 198 tHd~~~~ 204 (291)
||+.+..
T Consensus 166 ~~~~~~~ 172 (389)
T 1fnn_A 166 GHNDAVL 172 (389)
T ss_dssp ESSTHHH
T ss_pred ECCchHH
Confidence 9988543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.6e-09 Score=97.07 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=44.1
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
++++||++++|++++++|||||||||++..|++.+.+..|+|.+.+.++
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4789999999999999999999999999999999999999999876554
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.4e-09 Score=96.65 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=33.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 357899999999999999999999988887777766544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=84.01 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=30.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC-CccEEEE
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL-DAGTIKL 78 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p-~~G~I~~ 78 (291)
.+|++++|+||||||||||+++|++..++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36999999999999999999999998864 4555543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.52 E-value=4e-08 Score=83.78 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=24.8
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+++|+||++.+|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999765
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.3e-08 Score=102.66 Aligned_cols=124 Identities=11% Similarity=0.030 Sum_probs=71.3
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEecC---------eEEEEcCCCCCCCCCCHHHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQIS---------DIGYMPQELALHGELSIRETFRY 107 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~---------~ig~v~q~~~l~~~ltv~enl~~ 107 (291)
|+++++|..++|+|+||||||||++.|++...+ ..|+| .+|..+. .+++.+|...++.. ++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~------ 74 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GH------ 74 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TE------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CE------
Confidence 467889999999999999999999999977654 56777 4443321 12222222111110 00
Q ss_pred hccccCCChHHHHHHHHHHHHHcCCCCCCCCcC-cCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 108 YGYMFDMTDDQIETRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
.+.+ .|.+-. .++ ......+-..+..++++| |+.|+++.++. + ++.
T Consensus 75 ---------------------~~nl--iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~---~~~ 121 (665)
T 2dy1_A 75 ---------------------RVFL--LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER-A---WTV 121 (665)
T ss_dssp ---------------------EEEE--EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-H---HHH
T ss_pred ---------------------EEEE--EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH-H---HHH
Confidence 0001 111100 111 112223335688899999 99999987763 2 333
Q ss_pred hHhCCcEEEEEccCHhH
Q psy6612 187 MALNGKTIIITTHYIEE 203 (291)
Q Consensus 187 l~~~g~tii~~tHd~~~ 203 (291)
+.+.+..+|++.|.++.
T Consensus 122 ~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 122 AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHTTCCEEEEEECGGG
T ss_pred HHHccCCEEEEecCCch
Confidence 33457888889998775
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.7e-08 Score=86.14 Aligned_cols=42 Identities=24% Similarity=0.135 Sum_probs=36.1
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 4456689999999999999999999999998 78888877653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.7e-07 Score=86.85 Aligned_cols=38 Identities=24% Similarity=0.098 Sum_probs=32.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
++.+++++|||||||||++..|++.+.+..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 58899999999999999999999999887777766443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.41 E-value=3.9e-08 Score=84.14 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=36.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
..++|++++|+|+||||||||+++|++.+++..|.|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 357899999999999999999999999998888888775544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.3e-07 Score=81.57 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=26.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|+...+|++++|+||||||||||++.|++..+
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44556899999999999999999999999875
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-07 Score=79.00 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
.+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 469999999999999999999999874 7777776543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-07 Score=79.80 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=27.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.7e-08 Score=95.46 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=38.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc-EEE-ECCEec
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG-TIK-LSFRQI 83 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G-~I~-~~g~~~ 83 (291)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 775 787654
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-07 Score=81.87 Aligned_cols=133 Identities=13% Similarity=0.163 Sum_probs=84.4
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccc
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYM 111 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~ 111 (291)
.+.|+.+.--+.+|+++.|.|++|+|||||+..++....- .| ..+.|+.-+ ++..+..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g---------~~vl~~slE------~s~~~l~------ 112 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND---------DVVNLHSLE------MGKKENI------ 112 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT---------CEEEEEESS------SCHHHHH------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC---------CeEEEEECC------CCHHHHH------
Confidence 4467777767999999999999999999998777643211 12 234444322 3443322
Q ss_pred cCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-C
Q psy6612 112 FDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-N 190 (291)
Q Consensus 112 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~ 190 (291)
.++......+.+......-..||.++++|+..|...+.++++++.|+|... ...+...++++.+ .
T Consensus 113 ---------~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~ 178 (315)
T 3bh0_A 113 ---------KRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKN 178 (315)
T ss_dssp ---------HHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTS
T ss_pred ---------HHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhc
Confidence 222211111111111111123999999999999999999999999998643 3456666777764 3
Q ss_pred CcE--EEEEccC
Q psy6612 191 GKT--IIITTHY 200 (291)
Q Consensus 191 g~t--ii~~tHd 200 (291)
|.. +|++-|-
T Consensus 179 ~~~~~lVVID~l 190 (315)
T 3bh0_A 179 PGKRVIVMIDYL 190 (315)
T ss_dssp SSCCEEEEEECG
T ss_pred CCCCeEEEEeCc
Confidence 666 8887763
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.3e-08 Score=92.77 Aligned_cols=155 Identities=15% Similarity=0.080 Sum_probs=86.6
Q ss_pred eEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCC-CHH
Q psy6612 24 SAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGEL-SIR 102 (291)
Q Consensus 24 ~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~l-tv~ 102 (291)
++++.|+... ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.+..+.+...| + +..
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~q-------L~~~~ 149 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQ-------LRLLG 149 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHH-------HHHHH
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHH-------HHHhc
Confidence 4555666544 678888 899999999999999999999999999988888886655422111000 0 000
Q ss_pred HHHHHh--ccccCCChHHHHHHHHHHHHHc---CCCC--CCCCcCc--CChhHHHHHHHHHHHhcCCCEEEEcccCCCCC
Q psy6612 103 ETFRYY--GYMFDMTDDQIETRSKEILKLL---ELPP--AKKIVGA--LSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173 (291)
Q Consensus 103 enl~~~--~~~~~~~~~~~~~~~~~~l~~~---~l~~--~~~~~~~--LSgGqkQrv~iAral~~~p~llllDEPtsgLD 173 (291)
+...+. ....+....+. +.++++.+ +.+. .|.++.. -+.-+.+...+++++..++-++++| ++++.|
T Consensus 150 ~~~gv~v~~~~~~~~p~~i---~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~ 225 (425)
T 2ffh_A 150 EKVGVPVLEVMDGESPESI---RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQE 225 (425)
T ss_dssp HHHTCCEEECCTTCCHHHH---HHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTH
T ss_pred ccCCccEEecCCCCCHHHH---HHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHH
Confidence 111000 00001111121 12233322 2221 3444321 2345777778888887777788888 566655
Q ss_pred HHHHHHHHHHHHHhH-hCCcEEEEEcc
Q psy6612 174 PILSQIIWDRLKEMA-LNGKTIIITTH 199 (291)
Q Consensus 174 ~~~~~~i~~~l~~l~-~~g~tii~~tH 199 (291)
... .++.+. .-+.+-++.|+
T Consensus 226 av~------~a~~f~~~l~i~GVIlTK 246 (425)
T 2ffh_A 226 ALS------VARAFDEKVGVTGLVLTK 246 (425)
T ss_dssp HHH------HHHHHHHHTCCCEEEEES
T ss_pred HHH------HHHHHHhcCCceEEEEeC
Confidence 442 233333 23555566666
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-07 Score=85.95 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=37.1
Q ss_pred cCCCEEEEcccCCCCCH-HHHHHHHHHHHHhHhCCcEEEEEccC
Q psy6612 158 HNPKLLILDEPTVGLDP-ILSQIIWDRLKEMALNGKTIIITTHY 200 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~-~~~~~i~~~l~~l~~~g~tii~~tHd 200 (291)
.+|++|++||+..-.+. ..+..++..+..+.+.|+.||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999876654 67888999999988778999999997
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-07 Score=85.27 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877553
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-06 Score=75.73 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=71.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 123 (291)
++..+.|.||+|+|||||++++++.... + +-.+.- ..+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~----------~---~~~i~~-~~l---------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA----------T---FLNISA-ASL---------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC----------E---EEEEES-TTT----------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----------C---eEEeeH-HHH----------------------------
Confidence 5678999999999999999999985421 0 000000 000
Q ss_pred HHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH----------HHHHHHHHHHHHhHh----
Q psy6612 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP----------ILSQIIWDRLKEMAL---- 189 (291)
Q Consensus 124 ~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~----------~~~~~i~~~l~~l~~---- 189 (291)
....+ -+++++.|..++.+...+|.+|++||+.+-++. .....++..+..+..
T Consensus 91 -----------~~~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 91 -----------TSKYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -----------SSSSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -----------hhccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00111 135777888888888899999999999876553 233345555554421
Q ss_pred CCcEEEEEccCHhHH-----hhhCeEEEEe
Q psy6612 190 NGKTIIITTHYIEEA-----KGAHNIGLMR 214 (291)
Q Consensus 190 ~g~tii~~tHd~~~~-----~~~d~i~~l~ 214 (291)
.+..||.+|++++.+ .++++.+.+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 235677788875432 2467665553
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.4e-09 Score=98.47 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=51.3
Q ss_pred EEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 22 VTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 22 ~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
.++..+.|+...+++++++.+.+|.+++|+|+||||||||++.|++.+.+..|+|.+-+.+
T Consensus 33 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 33 SRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp CCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred cCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 3555566666778999999999999999999999999999999999988877877764443
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-06 Score=79.11 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=75.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC-CCCC-ccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR-NTLD-AGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl-~~p~-~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
-+++|+++.|.||+|||||||+..++.. ..|. .| |.. ..+.|+.-+..+ +......+. ...+...+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~~-~~vlyi~~e~~~----~~~~l~~~~-~~~g~~~~- 170 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GLS-GKAVYIDTEGTF----RWERIENMA-KALGLDID- 170 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CCS-CEEEEEESSSCC----CHHHHHHHH-HHTTCCHH-
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CCC-CeEEEEECCCCC----CHHHHHHHH-HHhCCCHH-
Confidence 5889999999999999999999887754 2331 11 100 234454433321 122211111 11222221
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChh-HHHHHHHHHHHh---cCCCEEEEcccCCCCCH--------HH----HHHHHH
Q psy6612 119 IETRSKEILKLLELPPAKKIVGALSGG-QQRRISFAVSLL---HNPKLLILDEPTVGLDP--------IL----SQIIWD 182 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~LSgG-qkQrv~iAral~---~~p~llllDEPtsgLD~--------~~----~~~i~~ 182 (291)
++++.+-+ ....+.. +.+.+..++.++ .+|+++++|+.++-... .. ..+++.
T Consensus 171 ------~~~~~l~~------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~ 238 (324)
T 2z43_A 171 ------NVMNNIYY------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLH 238 (324)
T ss_dssp ------HHHHTEEE------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHH
T ss_pred ------HHhccEEE------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHH
Confidence 12221111 1112333 335677777777 67999999999876532 11 244555
Q ss_pred HHHHhH-hCCcEEEEEccCHh
Q psy6612 183 RLKEMA-LNGKTIIITTHYIE 202 (291)
Q Consensus 183 ~l~~l~-~~g~tii~~tHd~~ 202 (291)
.|++++ +.+.+||+++|-..
T Consensus 239 ~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 239 QLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHhCCEEEEEcceee
Confidence 556655 34889999988653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=77.37 Aligned_cols=139 Identities=15% Similarity=0.170 Sum_probs=76.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC--CCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR--NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQ 118 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl--~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~ 118 (291)
-+++|+++.|.||+|||||||+..++.. .++..| |.. ..+.|+.-+..+ .......+. ...+...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~~-~~vlyi~~E~~~----~~~~l~~~~-~~~g~~~~- 185 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YPG-GKIIFIDTENTF----RPDRLRDIA-DRFNVDHD- 185 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BCC-CEEEEEESSSCC----CHHHHHHHH-HHTTCCHH-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CCC-CeEEEEECCCCC----CHHHHHHHH-HHcCCCHH-
Confidence 4789999999999999999999888874 332211 110 234555444322 222211111 11222221
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCcCChhH-HHHHHHHHHHh----cCCCEEEEcccCCCCCHH------------HHHHHH
Q psy6612 119 IETRSKEILKLLELPPAKKIVGALSGGQ-QRRISFAVSLL----HNPKLLILDEPTVGLDPI------------LSQIIW 181 (291)
Q Consensus 119 ~~~~~~~~l~~~~l~~~~~~~~~LSgGq-kQrv~iAral~----~~p~llllDEPtsgLD~~------------~~~~i~ 181 (291)
++++.+-+ ....+..+ .+.+..++.++ .+++++++|+.++-.... ...+++
T Consensus 186 ------~~l~~l~~------~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l 253 (343)
T 1v5w_A 186 ------AVLDNVLY------ARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQML 253 (343)
T ss_dssp ------HHHHTEEE------EECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHH
T ss_pred ------HHHhceeE------eecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHH
Confidence 12332211 11123332 24455556665 679999999999876442 134555
Q ss_pred HHHHHhH-hCCcEEEEEccCHhH
Q psy6612 182 DRLKEMA-LNGKTIIITTHYIEE 203 (291)
Q Consensus 182 ~~l~~l~-~~g~tii~~tHd~~~ 203 (291)
..|+.++ +.+.+||+++|....
T Consensus 254 ~~L~~la~~~~~~Vi~~nq~~~~ 276 (343)
T 1v5w_A 254 SRLQKISEEYNVAVFVTNQMTAD 276 (343)
T ss_dssp HHHHHHHHHHTCEEEEEECC---
T ss_pred HHHHHHHHHhCCEEEEEeeceec
Confidence 5566665 348899999996543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.4e-07 Score=77.41 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=37.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCC
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHG 97 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~ 97 (291)
+-=++++|++++|+|++||||||+.+.|++.++ .+.+++|+..+++
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--------------NCSVISQDDFFKP 59 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST--------------TEEEEEGGGGBCC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--------------CcEEEeCCccccC
Confidence 334678899999999999999999999999864 2677777766554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-05 Score=69.65 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=30.3
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh--CCcEEEEEcc
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMAL--NGKTIIITTH 199 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~--~g~tii~~tH 199 (291)
.+|+++|+..+.+.++......+..++..+.. ...++|+.||
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 47899999999999988766666555544432 1258888888
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-06 Score=77.54 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCHHH-HHHHHHHHHHhHhC-Cc--EEEEEccCHhHH
Q psy6612 142 LSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPIL-SQIIWDRLKEMALN-GK--TIIITTHYIEEA 204 (291)
Q Consensus 142 LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~~~-~~~i~~~l~~l~~~-g~--tii~~tHd~~~~ 204 (291)
+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.++++. +. .+.+++|+-+.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 888886 5566666 68889998 8999877 67788888888753 43 566677765444
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.13 E-value=8.2e-07 Score=73.18 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.|++++|+|||||||||++++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999999998754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-06 Score=71.25 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=25.7
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666665 999999999999999999873
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=6.1e-06 Score=74.84 Aligned_cols=30 Identities=33% Similarity=0.563 Sum_probs=27.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+.++..+.|.||+|+|||||+++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456789999999999999999999999875
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.05 E-value=4.4e-07 Score=89.42 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=48.5
Q ss_pred EeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCE
Q psy6612 23 TSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFR 81 (291)
Q Consensus 23 ~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~ 81 (291)
+++.+.|+...+++++++++ +|++++|+||||||||||+++|++.+.+..|+|.+.|.
T Consensus 87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 44455555556788888888 89999999999999999999999999988898887763
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=73.55 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=32.3
Q ss_pred cCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 158 HNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 158 ~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
.+|++|++||+-. .-+...+..+...+..+.+.+..+|++++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 4699999999855 33457888899999888777776777665
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-06 Score=72.84 Aligned_cols=40 Identities=28% Similarity=0.179 Sum_probs=32.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEec
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQI 83 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~~ 83 (291)
.+|++++|+|++||||||+.++|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998766 56 565655443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.5e-06 Score=74.76 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=31.2
Q ss_pred eEeeeeEEEe---CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 34 VLKGLNLNVP---ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 34 ~L~~vsl~i~---~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
-|.++||++. +|.+++|.||+||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 4788888887 9999999999999999999999999877 55553
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.2e-06 Score=70.22 Aligned_cols=26 Identities=38% Similarity=0.342 Sum_probs=23.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..+.|.||+|+|||||+++|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999987644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-06 Score=78.77 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=79.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC------------CCccEEEECCEec---------CeEEEEcCCCCCCCCCCHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT------------LDAGTIKLSFRQI---------SDIGYMPQELALHGELSIRETF 105 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~------------p~~G~I~~~g~~~---------~~ig~v~q~~~l~~~ltv~enl 105 (291)
.++|+|+||||||||++.|+|... +.+|.+.++|.++ +..++.+|....|..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999864 6789999999754 1123333444444444455555
Q ss_pred HHhcc------c-cCCChHHHHHHHHHHHHHcCCC------CCCCCc-CcCChhHHHHHHHHHHHh--cCCCEEEEcccC
Q psy6612 106 RYYGY------M-FDMTDDQIETRSKEILKLLELP------PAKKIV-GALSGGQQRRISFAVSLL--HNPKLLILDEPT 169 (291)
Q Consensus 106 ~~~~~------~-~~~~~~~~~~~~~~~l~~~~l~------~~~~~~-~~LSgGqkQrv~iAral~--~~p~llllDEPt 169 (291)
..... . .+... ....+.+.+...+.. ..|..- .+-+.-+- .-.+++.+. ...+++ ++
T Consensus 262 ~~ad~vllv~d~~~~~~~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~ 334 (439)
T 1mky_A 262 EKADVVVIVLDATQGITR--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI----FT 334 (439)
T ss_dssp HHCSEEEEEEETTTCCCH--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE----EC
T ss_pred hhCCEEEEEEeCCCCCCH--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE----EE
Confidence 43210 0 11222 223444555555532 111110 01111111 113444443 334443 58
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
|++.-....++++.+.+..++ .+.-+.|+.++.+
T Consensus 335 SA~~g~gv~~l~~~i~~~~~~-~~~~i~t~~ln~~ 368 (439)
T 1mky_A 335 SADKGWNIDRMIDAMNLAYAS-YTTKVPSSAINSA 368 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH-HTCCCCHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh-hcccCCHHHHHHH
Confidence 999988888888888776532 1223467776654
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=8.7e-07 Score=76.28 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC---CCCccEEEE
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN---TLDAGTIKL 78 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~---~p~~G~I~~ 78 (291)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 677888876
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=6.4e-06 Score=70.70 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=25.5
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 36 KGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 36 ~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3456677665 999999999999999998863
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.89 E-value=8.6e-05 Score=71.02 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=81.8
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcccc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMF 112 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~ 112 (291)
+.|+.+.--+.+|+++.|.|++|+|||||+..++.......| ..+.|+.-+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g---------~~vl~~slE------~~~~~l-------- 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG---------VGVGIYSLE------MPAAQL-------- 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---------CCEEEEESS------SCHHHH--------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CeEEEEECC------CCHHHH--------
Confidence 456666656999999999999999999999877765432222 123333221 233221
Q ss_pred CCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hCC
Q psy6612 113 DMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LNG 191 (291)
Q Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~g 191 (291)
..++. ....+++..+-.-+.||..+.+|+.-|...+.+.++++.|+|.. ++ ..+...++++. +.+
T Consensus 245 -------~~R~~--~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~---~~l~~~~~~l~~~~~ 310 (444)
T 2q6t_A 245 -------TLRMM--CSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TL---MEVRARARRLVSQNQ 310 (444)
T ss_dssp -------HHHHH--HHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BH---HHHHHHHHHHHHHSC
T ss_pred -------HHHHH--HHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CH---HHHHHHHHHHHHHcC
Confidence 12211 12234432221235799999999998888888888999998743 33 34556666665 356
Q ss_pred cEEEEEcc
Q psy6612 192 KTIIITTH 199 (291)
Q Consensus 192 ~tii~~tH 199 (291)
..+|++-+
T Consensus 311 ~~lIvID~ 318 (444)
T 2q6t_A 311 VGLIIIDY 318 (444)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEcC
Confidence 77777755
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-06 Score=73.48 Aligned_cols=43 Identities=23% Similarity=0.139 Sum_probs=36.9
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCcc--EEEECCEe
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAG--TIKLSFRQ 82 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G--~I~~~g~~ 82 (291)
+.+++|.+++|+|++||||||+.+.|++.+.|..| .+.+++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 44678999999999999999999999999887788 77776544
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-07 Score=85.40 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
++.++++|| ...|++..+..+.+.+.+... ...+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhC
Confidence 667999999 788999999889888887643 34566777766543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.84 E-value=8.3e-05 Score=69.42 Aligned_cols=122 Identities=15% Similarity=0.264 Sum_probs=67.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+++|+++.|.||+|+|||||...++.......+ .+.|+.-+..+.+ . .
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~----------~vlyid~E~s~~~---~--~----------------- 107 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP---I--Y----------------- 107 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC----------CEEEEESSCCCCH---H--H-----------------
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEeCCCCccH---H--H-----------------
Confidence 889999999999999999999777654322111 2444443322110 0 0
Q ss_pred HHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCHH-------------HHHHHHHHHHH
Q psy6612 122 RSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDPI-------------LSQIIWDRLKE 186 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~~-------------~~~~i~~~l~~ 186 (291)
+..++.+..+-.+.+-+.+ .|-..+++.++ .+++++++|.+++-.... ..+.+.+.+++
T Consensus 108 -----a~~~g~~~~~l~i~~~~~~-e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~ 181 (356)
T 1u94_A 108 -----ARKLGVDIDNLLCSQPDTG-EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRK 181 (356)
T ss_dssp -----HHHTTCCGGGCEEECCSSH-HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHH
T ss_pred -----HHHcCCChhheeeeCCCCH-HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHH
Confidence 0111221100001111112 34456666664 689999999999876321 11234445544
Q ss_pred h---H-hCCcEEEEEccCH
Q psy6612 187 M---A-LNGKTIIITTHYI 201 (291)
Q Consensus 187 l---~-~~g~tii~~tHd~ 201 (291)
| + +.+.+||+++|-.
T Consensus 182 L~~~a~~~~~~VI~~nq~~ 200 (356)
T 1u94_A 182 LAGNLKQSNTLLIFINQIR 200 (356)
T ss_dssp HHHHHHHHTCEEEEEEC--
T ss_pred HHHHHHHhCCEEEEEeccc
Confidence 4 3 4589999998853
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.5e-05 Score=67.97 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=72.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+.+|+.+++.||+||||||++.++........|. -..++.+++.|......++.+++.... +..-
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~-------~~~~~~l~~~p~~~la~q~~~~~~~~~---~~~~----- 137 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR-------AAECNIVVTQPRRISAVSVAERVAFER---GEEP----- 137 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC-------GGGCEEEEEESSHHHHHHHHHHHHHTT---TCCT-----
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC-------CCceEEEEeccchHHHHHHHHHHHHHh---cccc-----
Confidence 4579999999999999999887765321111111 123455666554333334445543211 0000
Q ss_pred HHHHHHHHcCC--CC------CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCc
Q psy6612 122 RSKEILKLLEL--PP------AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGK 192 (291)
Q Consensus 122 ~~~~~l~~~~l--~~------~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~ 192 (291)
-..+|. .. .+..+--.+.|+-.+.. ...+.+.+++++||.-. ++|.......++.+.....+-.
T Consensus 138 -----~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 138 -----GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp -----TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred -----CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 000010 00 00112224556665553 34688999999999976 6776665444444443332223
Q ss_pred EEEE-EccCHhHH
Q psy6612 193 TIII-TTHYIEEA 204 (291)
Q Consensus 193 tii~-~tHd~~~~ 204 (291)
++++ .|.+.+.+
T Consensus 211 ~il~SAT~~~~~~ 223 (235)
T 3llm_A 211 IVLMSATIDTSMF 223 (235)
T ss_dssp EEEEECSSCCHHH
T ss_pred EEEEecCCCHHHH
Confidence 5555 34444443
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=9.1e-07 Score=82.79 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=38.2
Q ss_pred cccceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 15 EVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 15 ~~~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
+....+.+.++.+.|+++.++++++|+| +|+|++|+|||||++.|.|...+..|.+
T Consensus 13 ~~~~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 13 ETPGYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp --------CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CCCceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 3345677788888888888999999987 9999999999999999998766555544
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.79 E-value=6.2e-06 Score=70.68 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.8e-05 Score=66.22 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 33 VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+++++|+..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4789999998888 568999999999999999997
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.1e-05 Score=73.55 Aligned_cols=31 Identities=16% Similarity=0.482 Sum_probs=27.6
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
+++..+++.+| +++|+|||||||||++.+|+
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888886 99999999999999999886
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.77 E-value=2e-06 Score=78.45 Aligned_cols=56 Identities=16% Similarity=0.048 Sum_probs=44.6
Q ss_pred eEEEEECCEeeEee-eeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEe
Q psy6612 24 SAYKKIGNHVVLKG-LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQ 82 (291)
Q Consensus 24 ~l~~~~~~~~~L~~-vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~ 82 (291)
++.+.|++.. ++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+
T Consensus 79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4445565543 56 888876 99999999999999999999999998877788775544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.76 E-value=2.2e-05 Score=64.71 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|..++|+|++|+|||||++.++|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=5.2e-06 Score=70.17 Aligned_cols=39 Identities=33% Similarity=0.355 Sum_probs=31.1
Q ss_pred EECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 28 KIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 28 ~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.|++ ..+++++|+..++++ ++++|++|||||||++.+.+
T Consensus 8 ~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -----CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 3444 368899999988885 68999999999999999987
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.70 E-value=1e-05 Score=67.57 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
+...+|.+++|+|++||||||+.+.|++.+.+..|.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34468999999999999999999999998877666653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.8e-06 Score=79.46 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=41.9
Q ss_pred EECCEeeEeeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCCCCCccE
Q psy6612 28 KIGNHVVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRNTLDAGT 75 (291)
Q Consensus 28 ~~~~~~~L~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~~p~~G~ 75 (291)
.||...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 45777889999999999999 9999999999999999999987665543
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.63 E-value=4.4e-06 Score=78.99 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=46.1
Q ss_pred cceEEEEeEEEEECC-EeeEe--------------eeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 17 KHSVAVTSAYKKIGN-HVVLK--------------GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~-~~~L~--------------~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+..+.++|+++.|.. +..|+ |+++.+.+|+..+|+||+|||||||++.|++.+
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 344667888888864 56888 899999999999999999999999999999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.4e-05 Score=61.17 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=2.4e-05 Score=65.59 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.6
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 37 GLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 37 ~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.3e-05 Score=66.28 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.60 E-value=4.1e-05 Score=63.17 Aligned_cols=22 Identities=32% Similarity=0.653 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=64.48 Aligned_cols=28 Identities=32% Similarity=0.449 Sum_probs=24.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.++.-+.|.||.|+|||||+++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999865
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=66.20 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987764
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=3.6e-05 Score=72.94 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=34.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC-----------CCCCccEEEECCE
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR-----------NTLDAGTIKLSFR 81 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl-----------~~p~~G~I~~~g~ 81 (291)
.+..|..++|+|+||+|||||+++|+|. +.|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6788898888764
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.56 E-value=3.2e-05 Score=65.76 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
...+|.+++|+||+||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998763
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.53 E-value=5e-05 Score=69.66 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999997653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=60.28 Aligned_cols=45 Identities=16% Similarity=0.150 Sum_probs=32.7
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+|.++++||.-. +|+.....+.+.+.+. ..+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence 3578999999755 7888777777766543 2356788888876654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.41 E-value=7e-05 Score=62.08 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
.++|+|++|||||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 47899999999999999999975443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00095 Score=62.45 Aligned_cols=123 Identities=18% Similarity=0.313 Sum_probs=67.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+++|+++.|.||.|+|||||...++.-.... | ..+.|+.-+..+.+ . .
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~-------g---~~vlyi~~E~s~~~---~---~--------------- 118 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA-------G---GTCAFIDAEHALDP---V---Y--------------- 118 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------T---CCEEEEESSCCCCH---H---H---------------
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC-------C---CeEEEEECCCChhH---H---H---------------
Confidence 47899999999999999999986665432111 1 12455544432111 0 0
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC---H----------HHHHHHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD---P----------ILSQIIWDRLK 185 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD---~----------~~~~~i~~~l~ 185 (291)
++.++++..+-.+..-..+ .|-+.+++.++ .+++++++|..++-.- . ...+.+.+.++
T Consensus 119 ------a~~~g~d~~~l~i~~~~~~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr 191 (366)
T 1xp8_A 119 ------ARALGVNTDELLVSQPDNG-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALR 191 (366)
T ss_dssp ------HHHTTCCGGGCEEECCSSH-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHH
T ss_pred ------HHHcCCCHHHceeecCCcH-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHH
Confidence 1122222100001110112 34456666665 5699999999886541 0 11234556666
Q ss_pred Hh---H-hCCcEEEEEccCH
Q psy6612 186 EM---A-LNGKTIIITTHYI 201 (291)
Q Consensus 186 ~l---~-~~g~tii~~tHd~ 201 (291)
+| + +.+.+||+++|-.
T Consensus 192 ~L~~~a~~~~~~VI~~nq~~ 211 (366)
T 1xp8_A 192 KLTAILSKTGTAAIFINQVR 211 (366)
T ss_dssp HHHHHHTTTCCEEEEEEEC-
T ss_pred HHHHHHHHcCCEEEEEEecc
Confidence 65 3 4588999888853
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=64.29 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=73.3
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHH-HhccccC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-YYGYMFD 113 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~-~~~~~~~ 113 (291)
|+.+---+.+|+++.|.|++|+|||||+--++--.....| ..+.|+.-+ ++..+.+. +.....+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g---------~~vl~~s~E------~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMG---------KKVGLAMLE------ESVEETAEDLIGLHNR 296 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSC---------CCEEEEESS------SCHHHHHHHHHHHHTT
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcC---------CcEEEEecc------CCHHHHHHHHHHHHcC
Confidence 4444335899999999999999999998655533222112 123444322 34444332 1111111
Q ss_pred CChHH---H------HHHHHHHHHHc-CCCC--CCCCcCcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC------
Q psy6612 114 MTDDQ---I------ETRSKEILKLL-ELPP--AKKIVGALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD------ 173 (291)
Q Consensus 114 ~~~~~---~------~~~~~~~l~~~-~l~~--~~~~~~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD------ 173 (291)
.+... . .+....+.+.+ .-.. ....+..++- .+.+..++.++ .+|+++++| +...+.
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~--~~i~~~i~~~~~~~~~~lvVID-~l~~l~~~~~~~ 373 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAET--DRLLAKLAYMRSGLGCDVIILD-HISIVVSASGES 373 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CH--HHHHHHHHHHHHTTCCSEEEEE-CTTCCCSCCSCC
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCH--HHHHHHHHHHHHhcCCCEEEEc-cchhcCCCCCCC
Confidence 11000 0 00111122222 1111 1112222333 34444555553 479999999 444332
Q ss_pred --HHHHHHHHHHHHHhHh-CCcEEEEEccC
Q psy6612 174 --PILSQIIWDRLKEMAL-NGKTIIITTHY 200 (291)
Q Consensus 174 --~~~~~~i~~~l~~l~~-~g~tii~~tHd 200 (291)
......+...|+.+++ .+.+||+++|-
T Consensus 374 ~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~ 403 (503)
T 1q57_A 374 DERKMIDNLMTKLKGFAKSTGVVLVVICHL 403 (503)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCeEEEEEcC
Confidence 1233456667777764 48999999884
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=8e-05 Score=61.74 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.37 E-value=5.8e-05 Score=63.45 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=27.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC---ccEEEECC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLD---AGTIKLSF 80 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~---~G~I~~~g 80 (291)
.+++|+|++|||||||++.|.+.+++. -|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 589999999999999999999876543 35555443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=7.1e-05 Score=63.24 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=1.9e-05 Score=73.81 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.2
Q ss_pred eeEeeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCC
Q psy6612 33 VVLKGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 33 ~~L~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367788888999998 9999999999999999999865
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.32 E-value=7.9e-05 Score=65.71 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=33.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI 83 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~ 83 (291)
...++.++.|+|++||||||+.+.|+..+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 567789999999999999999999998764 35677777654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=64.00 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
+-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999974
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00061 Score=62.78 Aligned_cols=124 Identities=14% Similarity=0.124 Sum_probs=67.8
Q ss_pred EeCCcEEEEECCCCccHHHHH-HHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLL-NCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl-~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
+++| ++-|.||.|||||||+ .+++...+...| ..+.|+.-+..+.+ .
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g---------~~vlyId~E~s~~~---~------------------- 73 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPD---------AVCLFYDSEFGITP---A------------------- 73 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTT---------CEEEEEESSCCCCH---H-------------------
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCC---------ceEEEEeccchhhH---H-------------------
Confidence 6789 9999999999999995 555444321111 12344443322211 0
Q ss_pred HHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHH--h--cCCCEEEEcccCCCCC-------H--------HHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSL--L--HNPKLLILDEPTVGLD-------P--------ILSQIIW 181 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral--~--~~p~llllDEPtsgLD-------~--------~~~~~i~ 181 (291)
.++.+|++..+-.+..=.-++++.+.++.++ + .+|+++++|=-++=.- + ...+.+-
T Consensus 74 -----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s 148 (333)
T 3io5_A 74 -----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMK 148 (333)
T ss_dssp -----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHH
T ss_pred -----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHH
Confidence 1233444321111111223566657777776 3 3699999997665531 0 1233444
Q ss_pred HHHHH---hH-hCCcEEEEEccCHh
Q psy6612 182 DRLKE---MA-LNGKTIIITTHYIE 202 (291)
Q Consensus 182 ~~l~~---l~-~~g~tii~~tHd~~ 202 (291)
+.|++ ++ +.+.++|++-|-..
T Consensus 149 ~~LrkL~~~ak~~~i~vi~tNQV~k 173 (333)
T 3io5_A 149 SLFRIVTPYFSTKNIPCIAINHTYE 173 (333)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC--
T ss_pred HHHHHHHHHHHHhCCEEEEECCeee
Confidence 44544 33 56899999999755
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.24 E-value=9e-05 Score=65.01 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=24.5
Q ss_pred EeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 35 LKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 35 L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++++++.+++| +.|.||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44555555555 88999999999999999998753
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00011 Score=64.35 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=30.6
Q ss_pred HHHHhcCCCEEEEcccCCC-CCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 153 AVSLLHNPKLLILDEPTVG-LDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 153 Aral~~~p~llllDEPtsg-LD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
..++...|+++|+|||-.- .+.......++.+..+...|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 3334468999999997642 3433333444555555567888999998
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0011 Score=57.90 Aligned_cols=51 Identities=24% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccC-----------HhHHhhhCeEEEEe
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY-----------IEEAKGAHNIGLMR 214 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd-----------~~~~~~~d~i~~l~ 214 (291)
+|+++++||--. |+.. +.+.+..+++.|.+||++-|+ .+++..||+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999954 6643 445566666668999999992 22334599998875
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=7e-05 Score=65.94 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00098 Score=61.46 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 40 LNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 40 l~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
-.+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999999988875
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=58.15 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00011 Score=68.78 Aligned_cols=46 Identities=17% Similarity=0.298 Sum_probs=40.4
Q ss_pred CCCEEEEcccCCCCC---HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLD---PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD---~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.|.++++||-=.-++ +.....+.+.+++.++.|..++++||+++.+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~ 310 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDF 310 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHh
Confidence 588999999988884 7788889999999988899999999998765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00028 Score=57.94 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0016 Score=60.25 Aligned_cols=27 Identities=37% Similarity=0.567 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..-+.|.||.|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999999764
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0003 Score=58.12 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998644
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00063 Score=65.23 Aligned_cols=128 Identities=13% Similarity=0.169 Sum_probs=75.1
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFD 113 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~ 113 (291)
.|+.+.--+.+|+++.|.|+.|+|||||+--++.-..-. | ..+.|+.-+ ++..+..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g---------~~vl~fSlE------ms~~ql~-------- 241 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D---------DVVNLHSLE------MGKKENI-------- 241 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T---------CEEEEECSS------SCTTHHH--------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C---------CEEEEEECC------CCHHHHH--------
Confidence 455554458999999999999999999986665432111 2 124444322 2322221
Q ss_pred CChHHHHHHHHHHHHHcCCCCCCCCcC--cCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhH-hC
Q psy6612 114 MTDDQIETRSKEILKLLELPPAKKIVG--ALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA-LN 190 (291)
Q Consensus 114 ~~~~~~~~~~~~~l~~~~l~~~~~~~~--~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~-~~ 190 (291)
.++.. ...+++..+-.-+ .|+..+.+|+.-|...+.+.+++|.|+|. +++. .+...+++++ +.
T Consensus 242 -------~R~~~--~~~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~---~i~~~ir~l~~~~ 307 (444)
T 3bgw_A 242 -------KRLIV--TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVN---YIWSKTRQTKRKN 307 (444)
T ss_dssp -------HHHHH--HHSCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHH---HHHHHHHHHHHHS
T ss_pred -------HHHHH--HHcCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHH---HHHHHHHHHHHHh
Confidence 11111 1122221000112 27888889998888888888999999874 4443 4555666664 34
Q ss_pred CcE--EEEEcc
Q psy6612 191 GKT--IIITTH 199 (291)
Q Consensus 191 g~t--ii~~tH 199 (291)
|.. +|++-+
T Consensus 308 ~~~~~lIVID~ 318 (444)
T 3bgw_A 308 PGKRVIVMIDY 318 (444)
T ss_dssp CSSCEEEEEEC
T ss_pred CCCCeEEEEec
Confidence 666 777755
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00032 Score=59.91 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHc
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999997
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=52.16 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..+.-+.|.||.|+|||++.+.|......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 34556899999999999999999886543
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0066 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++..+.|.||.|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999999999888765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00033 Score=56.55 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCI 65 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i 65 (291)
+++|.||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00033 Score=58.13 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0077 Score=54.87 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00081 Score=55.76 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=25.6
Q ss_pred EEEEECCCCccHHHHHHHHH-cC----CCCCcc----EEEECCEe
Q psy6612 47 IYGLLGPSGCGKTTLLNCIV-GR----NTLDAG----TIKLSFRQ 82 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~-gl----~~p~~G----~I~~~g~~ 82 (291)
-++|+|++|+|||||++.++ +. ..|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 47899999999999996554 43 456655 45555543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=9.8e-05 Score=62.51 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+++|.|++||||||+++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=56.04 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=31.4
Q ss_pred HhcCCCEEEEcccCC----CCCHHHHHHHHHHHHHhH-hCCcEEEEEccCH
Q psy6612 156 LLHNPKLLILDEPTV----GLDPILSQIIWDRLKEMA-LNGKTIIITTHYI 201 (291)
Q Consensus 156 l~~~p~llllDEPts----gLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~ 201 (291)
-..+|+++++|--+. .-|......+...|+.++ +.+.++++++|-.
T Consensus 132 ~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~ 182 (251)
T 2zts_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAP 182 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC
T ss_pred HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEe
Confidence 356899999985432 114455666777777776 4589999998853
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00034 Score=61.77 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|+||+|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00061 Score=63.74 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=29.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHc-----------CCCCCccEEEECC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG-----------RNTLDAGTIKLSF 80 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g-----------l~~p~~G~I~~~g 80 (291)
|-.++|+|.+|+|||||++.|+| -+.|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3457778887765
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00044 Score=57.70 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0044 Score=68.14 Aligned_cols=137 Identities=15% Similarity=0.228 Sum_probs=77.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
-+++|+++.|.||+|+|||||+..++.......|. +.|+.-+... .+..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~----------VlyiS~Ees~------~ql~--------------- 776 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT----------CAFIDAEHAL------DPIY--------------- 776 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------EEEECTTSCC------CHHH---------------
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC----------eEEEeccchH------HHHH---------------
Confidence 38999999999999999999998887755432232 3333222111 1110
Q ss_pred HHHHHHHHHcCCCCCCCCc-CcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC-H------------HHHHHHHHHH
Q psy6612 121 TRSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD-P------------ILSQIIWDRL 184 (291)
Q Consensus 121 ~~~~~~l~~~~l~~~~~~~-~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l 184 (291)
.+.+|++..+-.+ ..-+. .+-...++.++ .+|+++++|+..+-.. . ...+.+.+.+
T Consensus 777 ------A~~lGvd~~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~L 848 (1706)
T 3cmw_A 777 ------ARKLGVDIDNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAM 848 (1706)
T ss_dssp ------HHHTTCCGGGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHH
T ss_pred ------HHHcCCChhheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHH
Confidence 1112221100000 01122 24445555443 5899999999887652 1 1233455556
Q ss_pred HHh---H-hCCcEEEEEccCHh----------------HHhh-hCeEEEEeCC
Q psy6612 185 KEM---A-LNGKTIIITTHYIE----------------EAKG-AHNIGLMRDD 216 (291)
Q Consensus 185 ~~l---~-~~g~tii~~tHd~~----------------~~~~-~d~i~~l~~G 216 (291)
++| + +.|.+||+++|--. .++. ||.++.+.++
T Consensus 849 r~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~ 901 (1706)
T 3cmw_A 849 RKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 901 (1706)
T ss_dssp HHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHcCCEEEEEecCCCccccccCCccccCCcchhhheeeEEEEEEec
Confidence 554 3 45899999988321 2444 7888888543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00042 Score=57.94 Aligned_cols=31 Identities=29% Similarity=0.411 Sum_probs=25.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 80 (291)
..+++|.|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 358999999999999999999985 5555543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00041 Score=57.07 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00057 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00052 Score=56.62 Aligned_cols=23 Identities=39% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00059 Score=56.42 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00057 Score=55.83 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~g 67 (291)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00052 Score=58.24 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|+||+|||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999887543
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00046 Score=61.26 Aligned_cols=44 Identities=20% Similarity=0.081 Sum_probs=34.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEE
Q psy6612 168 PTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIG 211 (291)
Q Consensus 168 PtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~ 211 (291)
|||+.+..+...+++.+.+.... ..+..+.+|..+.++. ++++.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~ 189 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHIS 189 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHH
Confidence 99999999999999999887643 4556778888887755 66543
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00052 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.231 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.++.++.|.|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999843
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00067 Score=56.95 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+|.+++|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876543
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00057 Score=61.60 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=29.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 80 (291)
-..|.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986542 35666765
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00046 Score=61.76 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=35.4
Q ss_pred CCEeeEeeeeEEEeCC-----------cEEEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 30 GNHVVLKGLNLNVPEN-----------KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~G-----------ei~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
|...+++.+...+..+ ..+.|.||+|+||||+.++|++...+..|.+
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4444555555555544 5899999999999999999999887766644
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00073 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++.+++|.|+.||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998753
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00063 Score=56.50 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0055 Score=58.70 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999887764
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00071 Score=57.01 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998643
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0022 Score=51.25 Aligned_cols=40 Identities=8% Similarity=-0.033 Sum_probs=28.9
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
+..+|++||. ..|++..+..+.+.+.+....+..+|++|+
T Consensus 75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 3578999995 567888888888888775333455666665
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00081 Score=56.70 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+|.+++|.|+.||||||+.+.|+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999998643
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00087 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0009 Score=55.19 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00073 Score=55.55 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=18.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998544
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0085 Score=66.81 Aligned_cols=136 Identities=15% Similarity=0.216 Sum_probs=78.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~ 121 (291)
+++|+++.|.||+|+|||||...++.-.....+ .+.|+.-+..+.+ ++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~----------~vlyis~E~s~~~---~~------------------- 427 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----------TCAFIDAEHALDP---IY------------------- 427 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----------CEEEECTTSCCCH---HH-------------------
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCC----------eEEEEEcCCCHHH---HH-------------------
Confidence 899999999999999999998766654322211 2444433322110 00
Q ss_pred HHHHHHHHcCCCCCCCCc-CcCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCC-H------------HHHHHHHHHHH
Q psy6612 122 RSKEILKLLELPPAKKIV-GALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLD-P------------ILSQIIWDRLK 185 (291)
Q Consensus 122 ~~~~~l~~~~l~~~~~~~-~~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD-~------------~~~~~i~~~l~ 185 (291)
++.+|++..+-.+ ...+. .|-+.+++.++ .+|+++++|.-++-.. . ...+.+.+.++
T Consensus 428 -----a~~lGvd~~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr 500 (2050)
T 3cmu_A 428 -----ARKLGVDIDNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMR 500 (2050)
T ss_dssp -----HHHTTCCTTTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHH
T ss_pred -----HHHcCCCHHHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHH
Confidence 1122332111011 11233 34456677664 5799999999876552 1 12334556666
Q ss_pred Hh---H-hCCcEEEEEccCHh----------------HHhh-hCeEEEEeCC
Q psy6612 186 EM---A-LNGKTIIITTHYIE----------------EAKG-AHNIGLMRDD 216 (291)
Q Consensus 186 ~l---~-~~g~tii~~tHd~~----------------~~~~-~d~i~~l~~G 216 (291)
+| + +.+.+||+++|--. .++. ||.++.|...
T Consensus 501 ~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~ 552 (2050)
T 3cmu_A 501 KLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRI 552 (2050)
T ss_dssp HHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEec
Confidence 65 3 45899999988422 2344 7878777654
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.001 Score=55.60 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+++|+|++|||||||+..|++.+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47999999999999999999887653
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=23.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
=....++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998763
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00095 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|||||||++.+++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0012 Score=63.14 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHhcCCCEEEEcccCC-CCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 145 GQQRRISFAVSLLHNPKLLILDEPTV-GLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 145 GqkQrv~iAral~~~p~llllDEPts-gLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+.+....+...+.+++++|+..... ++... ...+.+.++ +.++.+|++-+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~---~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILY---RTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHT---TCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHH---HcCCCEEEEEECccch
Confidence 47777778888888899888776654 45544 344555544 3567788877766654
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0024 Score=58.53 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=31.5
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
....+++..+.+ .|.-++|.|++|+|||||...+.+
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 356788888888 789999999999999999998887
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0014 Score=55.87 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=54.81 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.+.+++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456799999999999999999998643
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=58.78 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|++|||||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0014 Score=52.84 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0017 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998765
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=52.37 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0012 Score=52.64 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=52.97 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++++|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 378999999999999999987643
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=56.25 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998543
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=52.32 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0014 Score=52.08 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=65.28 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=24.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
+++|+.+.|.||.|+|||||...++-
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999988754
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|||||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0068 Score=58.75 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=23.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+..-+.|.||+|+|||++.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3555679999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999988754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=54.80 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0014 Score=52.01 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0018 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+++|.|+.||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44589999999999999999998543
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=54.23 Aligned_cols=26 Identities=31% Similarity=0.347 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+-+++|.|+.||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998643
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=54.96 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|.||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999653
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
..+++|.|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0015 Score=52.05 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999988654
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=53.02 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0016 Score=52.68 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999888754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0023 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.-.++++|+.|||||||++.+.+-.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34478999999999999999998753
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0015 Score=55.88 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998643
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=51.86 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=53.85 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.8
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0015 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.529 Sum_probs=19.9
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998754
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0015 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0021 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0017 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998653
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0021 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.001 Score=54.16 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.=-++++|++|||||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999874
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=56.55 Aligned_cols=25 Identities=24% Similarity=0.297 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999865
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0017 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=54.51 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|.||.||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997543
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0017 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999875
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.015 Score=52.27 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=31.7
Q ss_pred CCCEEEEcccCCCCC-HHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLD-PILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD-~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
+++++++||.- .|. ...+..+...+.+.. .+..+|++|++...+
T Consensus 105 ~~~vliiDEi~-~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 105 RQKVIVIDEFD-RSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI 149 (324)
T ss_dssp CEEEEEEESCC-CGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred CCeEEEEECCc-ccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence 78999999974 445 666777777777654 346788888876643
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.002 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998653
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl 68 (291)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.002 Score=52.84 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999864
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.002 Score=53.17 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0021 Score=51.54 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999763
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0023 Score=51.65 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999998753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0021 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998743
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=52.67 Aligned_cols=24 Identities=33% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 368999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0023 Score=50.99 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=18.6
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0026 Score=57.70 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|++|+|||||++.+.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997543
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0027 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+++|.|+.||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998743
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=51.87 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999998643
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0024 Score=51.43 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0022 Score=51.70 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0029 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl 68 (291)
-++||.|+.||||||+.+.++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+++-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0025 Score=51.60 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.019 Score=63.29 Aligned_cols=129 Identities=16% Similarity=0.229 Sum_probs=71.1
Q ss_pred eeEeeeeE--EEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhcc
Q psy6612 33 VVLKGLNL--NVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGY 110 (291)
Q Consensus 33 ~~L~~vsl--~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~ 110 (291)
..|+.+-= -+++|+++.|.||.|+|||||.-.++..... . | ..+.|+.-+....+ . .
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~-~------G---~~vlyis~E~s~~~---~--~------ 427 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-E------G---KTCAFIDAEHALDP---I--Y------ 427 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH-T------T---CCEEEECTTSCCCH---H--H------
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-h------C---CCeEEEEccCchHH---H--H------
Confidence 34555421 3889999999999999999998666543221 1 1 12455544432211 0 0
Q ss_pred ccCCChHHHHHHHHHHHHHcCCCCCCCCcC-cCChhHHHHHHHHHHHh--cCCCEEEEcccCCCCCH-------------
Q psy6612 111 MFDMTDDQIETRSKEILKLLELPPAKKIVG-ALSGGQQRRISFAVSLL--HNPKLLILDEPTVGLDP------------- 174 (291)
Q Consensus 111 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~LSgGqkQrv~iAral~--~~p~llllDEPtsgLD~------------- 174 (291)
++.+|++..+-.+. .-+..| -+.+++.++ .+|+++++|..++-...
T Consensus 428 ----------------a~~lGvd~~~L~i~~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~ 489 (1706)
T 3cmw_A 428 ----------------ARKLGVDIDNLLCSQPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMG 489 (1706)
T ss_dssp ----------------HHHTTCCGGGCEEECCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTT
T ss_pred ----------------HHHcCCCHHHeEEcCCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchh
Confidence 11122221000001 112322 334555554 57999999998876641
Q ss_pred HHHHHHHHHHHHh----HhCCcEEEEEccC
Q psy6612 175 ILSQIIWDRLKEM----ALNGKTIIITTHY 200 (291)
Q Consensus 175 ~~~~~i~~~l~~l----~~~g~tii~~tHd 200 (291)
...+.+.+.++++ ++.+.+||+++|-
T Consensus 490 ~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl 519 (1706)
T 3cmw_A 490 LAARMMSQAMRKLAGNLKQSNTLLIFINQI 519 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEEEEEECE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence 1223445555555 3458999999885
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0032 Score=55.03 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++-+++|.||.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.01 Score=57.54 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=54.7
Q ss_pred CCcCcCChhHHHHHHHHHH--Hhc---------------CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEcc
Q psy6612 137 KIVGALSGGQQRRISFAVS--LLH---------------NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTH 199 (291)
Q Consensus 137 ~~~~~LSgGqkQrv~iAra--l~~---------------~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tH 199 (291)
+..+.+||||+|-.-+|.+ +++ .-.+++|||. +-+|....+..+++++++ |.-+|++|=
T Consensus 375 ~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP 450 (483)
T 3euj_A 375 AESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAP 450 (483)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred cccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECc
Confidence 3467899999996544443 333 2257999999 999999999999999987 677888887
Q ss_pred CHhHH-hhhCeEEEEe
Q psy6612 200 YIEEA-KGAHNIGLMR 214 (291)
Q Consensus 200 d~~~~-~~~d~i~~l~ 214 (291)
+ .+ ..+|.++.+-
T Consensus 451 ~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 451 E--NISPERGTTYKLV 464 (483)
T ss_dssp S--SCCCSSSEEEECC
T ss_pred c--hhhhccCceEEEE
Confidence 7 33 3478777664
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.003 Score=57.30 Aligned_cols=23 Identities=35% Similarity=0.663 Sum_probs=21.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|+|+.|||||||++.+.|.-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0035 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999988764
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0026 Score=56.26 Aligned_cols=23 Identities=43% Similarity=0.689 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0028 Score=51.37 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0023 Score=56.75 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999988754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0025 Score=59.63 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998865
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.003 Score=51.68 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.=-++++|+.|+|||||++.+.+-.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468999999999999999998754
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0055 Score=52.69 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 30 GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 30 ~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.....+...-+.+ .|..+.|+||+|||||||...++..
T Consensus 20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3444566655554 6789999999999999999988764
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0026 Score=51.88 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998653
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0029 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998643
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0017 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=19.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++-++||.||+||||||+.+.++..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.003 Score=52.52 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.003 Score=51.98 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0039 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
-+|.++++.|+.||||||+++.|+..+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999876643
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0032 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.-+++|.|+.||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999984
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0028 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998753
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0031 Score=55.08 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.002 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++|+|+.|+|||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0029 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0033 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999988754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0035 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0043 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999998864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.003 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0038 Score=51.91 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0014 Score=63.36 Aligned_cols=45 Identities=27% Similarity=0.356 Sum_probs=34.6
Q ss_pred EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 32 HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 32 ~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
..+++.+ +.+-+|+..+|+||+|+|||||++.|++......|.+.
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 3466666 67789999999999999999999999876543334443
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0041 Score=55.29 Aligned_cols=30 Identities=23% Similarity=0.432 Sum_probs=22.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCCccE
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGT 75 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~~G~ 75 (291)
-.++++|.+|+|||||++.+.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 378999999999999999999976544443
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0035 Score=54.73 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=22.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+|.++.+.|+.||||||+.+.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999987654
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0034 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0035 Score=55.82 Aligned_cols=23 Identities=43% Similarity=0.730 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|..|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0037 Score=51.42 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998644
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0037 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0038 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998653
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0036 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++++|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0037 Score=52.11 Aligned_cols=21 Identities=43% Similarity=0.634 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|++|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0039 Score=52.92 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999763
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0034 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 478999999999999999884
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0028 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0033 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999998764
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0039 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999864
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=55.29 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.2
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~g 67 (291)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0039 Score=50.49 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999998864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0046 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+|.++++.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987664
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0035 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0039 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.041 Score=48.20 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.4
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccC-----------HhHHhhhCeEEEEe
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHY-----------IEEAKGAHNIGLMR 214 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd-----------~~~~~~~d~i~~l~ 214 (291)
.+.+++++||---..| +.++++.+.+.|+.||++-++ .+++..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999877654 555555555578999999999 33345699988764
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0035 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0041 Score=53.12 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|+|||||++.+++-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998853
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0041 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0041 Score=51.51 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0043 Score=55.62 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999753
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0037 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4799999999999999988764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0046 Score=50.09 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999987653
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.005 Score=53.10 Aligned_cols=27 Identities=33% Similarity=0.359 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987664
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0041 Score=51.24 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0036 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0049 Score=51.86 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999997543
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0042 Score=51.68 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0056 Score=52.77 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0042 Score=51.83 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0048 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-++++|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 488999999999999999998644
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0039 Score=52.04 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.005 Score=51.06 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.015 Score=59.10 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|.||.|+|||++.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=52.12 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999874
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=52.21 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998754
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0058 Score=52.92 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0045 Score=51.90 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0061 Score=52.75 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=26.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+|.++.+-|+.||||||+.+.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36899999999999999999999987765
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0052 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4799999999999999888764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=52.94 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
....-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998754
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0057 Score=56.61 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+++|.||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0046 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.01 Score=61.09 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.1
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..+.|.||+|+|||++.+.|+.....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47899999999999999999987654
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0069 Score=52.68 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=24.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+|.++++.|+.||||||+.+.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999987654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0034 Score=51.07 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=9.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999987643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0072 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0051 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0052 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++|+|..|+|||||++.++|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 689999999999999999999753
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0072 Score=52.36 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=24.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
+-.+.+..++.|+||.||||||..+.|+--
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334567789999999999999999999854
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0053 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998753
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0075 Score=55.34 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+++|.||+|||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999998754
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0059 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.006 Score=53.68 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++++|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0057 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999865
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.009 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.+++|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999865
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0032 Score=53.03 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+++-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0051 Score=54.06 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 578899999999999999999998766
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0015 Score=57.20 Aligned_cols=28 Identities=36% Similarity=0.698 Sum_probs=22.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
++....| +.|.||+|+|||||.++|+..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3444555 779999999999999999974
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0078 Score=55.32 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0017 Score=62.13 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.4
Q ss_pred EEEeCC--cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 40 LNVPEN--KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 40 l~i~~G--ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
|.+.++ .+++++|++|+||||+...|++.+..
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444 59999999999999999999998764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.008 Score=51.41 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0072 Score=51.21 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=20.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.++|+|+.|+|||||++.+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999998887653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0033 Score=52.09 Aligned_cols=22 Identities=18% Similarity=0.452 Sum_probs=4.2
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988865
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0097 Score=49.84 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=28.0
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~ 202 (291)
+++++++||-=- +++ .+.+.|+.+++.|..|+++.++.+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLT 114 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccc
Confidence 678999999743 543 355667777766888998888544
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0073 Score=50.48 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999987643
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0051 Score=50.50 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999865
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0084 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=50.49 Aligned_cols=26 Identities=35% Similarity=0.545 Sum_probs=23.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|.++++=|+-||||||+++.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999999987664
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0079 Score=50.39 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 578999999999999988875
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0091 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999988765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.011 Score=48.88 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=31.9
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.++.++++||. ..+++.....+...+.+.. .+..+|++|+....+
T Consensus 101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 101 APFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVSRI 145 (226)
T ss_dssp CSCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred cCceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhc
Confidence 36889999995 5677777777777776643 346677777766543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.013 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+++|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4579999999999999999998654
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.0094 Score=49.86 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988864
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.013 Score=50.25 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
++.|+||.||||+|..+.|+.-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0074 Score=57.79 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=28.5
Q ss_pred eeeeEEEeCCcE--EEEECCCCccHHHHHHHHHcCCCC
Q psy6612 36 KGLNLNVPENKI--YGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 36 ~~vsl~i~~Gei--~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+.+.-.+..|.+ +.|.||.|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444455566665 899999999999999999987754
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=53.59 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=25.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+|..+.|.||.|+|||||.+.++..+..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999999987653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.021 Score=51.24 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
-.++++|.+|+|||||+|.|.|-...
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEecCCCchHHHHHHHhcCcee
Confidence 36899999999999999999997643
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.012 Score=54.37 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
..-+++|+|+.|+|||||++.+++.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987653
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.71 E-value=0.035 Score=46.66 Aligned_cols=33 Identities=15% Similarity=0.091 Sum_probs=24.9
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.++..- ---.|.-+.|.|++|+|||||...+..
T Consensus 6 ~lHas~-v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 6 TWHANF-LVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEESEE-EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEE-EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 344333 345688999999999999999877764
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.76 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
..+++|+|+-|.|||||.+.++.
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 47999999999999999999984
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=94.63 E-value=0.011 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=18.6
Q ss_pred EEEEECCCCccHHHHHHH-HHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNC-IVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~-i~gl 68 (291)
-++++|+.|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5553
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=54.73 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|+|..++|||||++.++|-.
T Consensus 3 I~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 3 IGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7899999999999999999864
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.63 E-value=0.006 Score=50.87 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++++|+.|+|||||++.+.+
T Consensus 32 ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 589999999999999988764
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.58 E-value=0.019 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++|.||+|||||||.+.|+..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999888644
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.018 Score=50.55 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=22.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.+..-+.|.||.|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34457889999999999999999875
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.019 Score=50.83 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.-+.|.||.|+||||+.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999865
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.022 Score=51.58 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+.-+.|.||.|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987554
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.49 E-value=0.02 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.325 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
....+.|.||.|+|||+|.++|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33467888999999999999999765
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.0039 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.+.+-.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.017 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|+.|+|||||++.++|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.022 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+..+.|.||.|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=94.40 E-value=0.02 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.-+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999876
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.023 Score=49.69 Aligned_cols=22 Identities=41% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.+||+|+.||||||+.+.|+.-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5799999999999999998753
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=94.32 E-value=0.026 Score=51.08 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+..-+.|.||.|+|||||.++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 44568999999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 291 | ||||
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 5e-52 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-48 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-45 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-45 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-44 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-43 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-43 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-42 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-42 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-40 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-39 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-38 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 8e-38 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-37 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-36 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-36 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-36 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-34 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-29 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-15 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 3e-06 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 0.004 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 168 bits (427), Expect = 5e-52
Identities = 59/230 (25%), Positives = 104/230 (45%), Gaps = 20/230 (8%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+++++ +T K+ GN + LNL + + + LLGPSGCGKTT L I G
Sbjct: 7 VKLEN---LT---KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60
Query: 74 GTIKLSFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
G I R ++ I + Q A+ +++ E + + D+I+ R +
Sbjct: 61 GRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
+LL++ + LSGGQ++R++ A +++ P +L++DEP LD L + +K
Sbjct: 121 AELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 180
Query: 186 EMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
++ T I TH EA I +M G+L+ +
Sbjct: 181 KLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR----GQLLQIGSPTEVYL 226
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 157 bits (399), Expect = 6e-48
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 14/225 (6%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
+V V K+IG +LKG++ + E +I+GL+GP+G GKTT L I +G + +
Sbjct: 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 61
Query: 79 SFRQI--------SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL 130
+ + I Y+P+E + + E R+ + + +IE + ++
Sbjct: 62 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA 121
Query: 131 ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
L K V S G R++ A +L+ NP+L ILDEPT GLD + ++ + LK+ +
Sbjct: 122 GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 190 NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
G TI++++H + E + I L+ + G +V VE L E
Sbjct: 182 EGLTILVSSHNMLEVEFLCDRIALIHN----GTIVETGTVEELKE 222
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 152 bits (385), Expect = 1e-45
Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 30/233 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS-- 84
K+ G H VLKG++L + ++G SG GK+T L CI G I ++ + I+
Sbjct: 10 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLV 69
Query: 85 --------------------DIGYMPQELALHGELSIRETFRYYG-YMFDMTDDQIETRS 123
+ + Q L +++ E + ++ R+
Sbjct: 70 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA 129
Query: 124 KEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
+ L + + K LSGGQQ+R+S A +L P +L+ DEPT LDP L +
Sbjct: 130 LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 189
Query: 182 DRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
++++A GKT+++ TH + A+ + ++ + G++ E +
Sbjct: 190 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQ----GKIEEEGDPEQVFG 238
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 150 bits (379), Expect = 8e-45
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 20/231 (8%)
Query: 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78
V + +K G ++ ++L V + + LLGPSGCGKTT L I G G I +
Sbjct: 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Query: 79 SFRQIS-------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+ ++ DI + Q AL+ +++ + + + + +I+ R +E
Sbjct: 63 GDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVRE 122
Query: 126 ILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ +LL L + LSGGQ++R++ +++ P++ ++DEP LD L + L
Sbjct: 123 VAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 185 KEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
K++ G T I TH EA I +M G L + + +
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR----GVLQQVGSPDEVYD 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 149 bits (377), Expect = 1e-44
Identities = 68/231 (29%), Positives = 114/231 (49%), Gaps = 27/231 (11%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+I++K+ VT YK + LK +NLN+ E + ++GPSG GK+T+LN I +
Sbjct: 1 MIKLKN---VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP 57
Query: 72 DAGTIKLSFRQISD-------------IGYMPQELALHGELSIRETFRY---YGYMFDMT 115
G + + + +D IG++ Q+ L L+ E + Y M+
Sbjct: 58 TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Query: 116 DDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLD 173
++ R+ E LK+ EL A LSGGQQ+R++ A +L +NP +++ D+PT LD
Sbjct: 118 GEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 174 PILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLV 223
+ I LK++ GKT+++ TH I A+ I ++D G +
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD----GEVE 224
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 146 bits (370), Expect = 1e-43
Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 22/233 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
++EV+ + Y G +KG++L VP +I L+G +G GKTT L+ I G
Sbjct: 6 VLEVQS---LHVYY---GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59
Query: 73 AGTIKLSF----------RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122
G I + I +P+ + EL++ E Y +
Sbjct: 60 KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL 119
Query: 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIW 181
L K++ G LSGG+Q+ ++ +L+ PKLL++DEP++GL PIL ++
Sbjct: 120 EWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 182 DRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ ++++ G TI++ A AH ++ G++V L++
Sbjct: 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLET----GQIVLEGKASELLD 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 146 bits (369), Expect = 2e-43
Identities = 64/230 (27%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+++++ VT K G VV K +NL++ E + +GPSGCGK+TLL I G T+ +
Sbjct: 1 VQLQN---VT---KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITS 54
Query: 74 GTIKLSFRQISD-------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEI 126
G + + ++++D +G + Q AL+ LS+ E + + + I R ++
Sbjct: 55 GDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 114
Query: 127 LKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLK 185
++L+L + ALSGGQ++R++ +L+ P + +LDEP LD L + +
Sbjct: 115 AEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 174
Query: 186 EMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ G+T+I TH EA A I ++ GR+ L
Sbjct: 175 RLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA----GRVAQVGKPLELYH 220
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 145 bits (368), Expect = 3e-43
Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 13 IIEVKHSVAVTSAYKKIGNHV-VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
+I++ + +T + + + L ++L+VP +IYG++G SG GK+TL+ C+
Sbjct: 1 MIKLSN---ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57
Query: 72 DAGTIKLSFRQISD------------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQI 119
G++ + ++++ IG + Q L ++ + + D++
Sbjct: 58 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 117
Query: 120 ETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
+ R E+L L+ L LSGGQ++R++ A +L NPK+L+ DE T LDP ++
Sbjct: 118 KRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 179 IIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
I + LK++ G TI++ TH ++ K + ++ + G L+ D V +
Sbjct: 178 SILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISN----GELIEQDTVSEVFS 230
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 143 bits (363), Expect = 3e-42
Identities = 53/249 (21%), Positives = 113/249 (45%), Gaps = 35/249 (14%)
Query: 12 EIIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71
EI+ ++ + K G L G++++V + + ++GP+G GK+TL+N I G
Sbjct: 3 EILRTEN---IV---KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA 56
Query: 72 DAGTIKLSFRQISD----------IGYMPQELALHGELSIRETFRYYGYMFDMT------ 115
D G + + I++ I Q E+++ E +
Sbjct: 57 DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 116 -------DDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDE 167
++++ ++ +IL+ L+L + G LSGGQ + + +L+ NPK++++DE
Sbjct: 117 YKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 168 PTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHD 226
P G+ P L+ I++ + E+ G T +I H ++ ++ +M + G+++
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFN----GQIIAEG 232
Query: 227 IVESLVEAL 235
E ++ +
Sbjct: 233 RGEEEIKNV 241
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 144 bits (364), Expect = 3e-42
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 14/218 (6%)
Query: 21 AVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80
V+ ++ + + VLK +NLN+ + ++ + G +G GKT+LL I+G G IK S
Sbjct: 38 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 97
Query: 81 RQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-----PA 135
R + + Q + +I+E + + + + + +
Sbjct: 98 R----VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVL 152
Query: 136 KKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTII 195
+ LSGGQ+ RIS A ++ + L +LD P LD + +++ + KT I
Sbjct: 153 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 196 ITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ T +E + A I ++ G + L
Sbjct: 213 LVTSKMEHLRKADKILILHQ----GSSYFYGTFSELQS 246
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 137 bits (346), Expect = 2e-40
Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+E++ ++ Y K VL+ + + + + + GP+G GKTTLL I
Sbjct: 2 KLEIRD---LSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 54
Query: 73 AGTIKL----SFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILK 128
G I + I ++P+E+ + ++S+ + + ++ + ++ E + L+
Sbjct: 55 KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIM--DALE 112
Query: 129 LLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMA 188
+E+ KK +G LS G RR+ A +LL N ++ +LD+P V +D + + E+
Sbjct: 113 SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 172
Query: 189 LN-GKTIIITTHYIEEA 204
G II + +
Sbjct: 173 KEKGIVIISSREELSYC 189
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 134 bits (339), Expect = 6e-39
Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 23/235 (9%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I VK+ V+ +KK G V L +N+N+ + +G+LGPSG GKTT + I G +
Sbjct: 4 IIVKN---VSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 74 GTIKLSFRQIS------------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIET 121
G + R ++ IG + Q AL+ L+ E + M+ ++I
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 122 RSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180
R +E+ K+L++ LSG QQ+R++ A +L+ +P LL+LDEP LD +
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 181 WDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+KE+ G T+++ +H + A +G++ G+LV E L +
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVK----GKLVQVGKPEDLYD 230
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 134 bits (338), Expect = 1e-38
Identities = 57/237 (24%), Positives = 100/237 (42%), Gaps = 28/237 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
+E ++ VT Y L+ +NL +P K L+G SG GK+T+ + I +D
Sbjct: 14 LEFRN---VTFTYPG-REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 69
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G I + + + + + Q + L + Y + + +QIE ++
Sbjct: 70 GHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN--IAYARTEEYSREQIEEAAR 127
Query: 125 --EILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ + I+G LSGGQ++RI+ A +LL + +LILDE T LD
Sbjct: 128 MAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 187
Query: 177 SQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ I L E+ +T ++ H + + A I ++ D G +V L+
Sbjct: 188 ERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVED----GIIVERGTHSELLA 239
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 131 bits (332), Expect = 8e-38
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 25/236 (10%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
++ +H V AY + +L+ ++ N I GPSG GK+T+ + +
Sbjct: 1 MLSARH---VDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT 55
Query: 73 AGTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123
AG I + + I + IG++ Q+ A+ + D
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 124 KEILKLLELPPAKKIV------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+E P + +SGGQ++R++ A + L NPK+L+LDE T LD
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
++ L + G+T ++ H + A I + G++ LV
Sbjct: 176 SMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEK----GQITGSGKHNELVA 226
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 131 bits (331), Expect = 2e-37
Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 27/236 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I++ H V+ Y +LK +NL++ + + +G SG GK+TL+N I + +
Sbjct: 17 IDIDH---VSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 74 GTIKLSFRQISDIGY--------MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK- 124
G I + I D + Q+ + +++E TD+++ +K
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG--RPTATDEEVVEAAKM 130
Query: 125 -EILKLLELPPAK--KIVGA----LSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILS 177
+ P VG LSGGQ++R+S A L+NP +LILDE T LD
Sbjct: 131 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 190
Query: 178 QIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
II + L ++ +T +I H + A I ++ + G +V L+
Sbjct: 191 SIIQEALDVLS-KDRTTLIVAHRLSTITHADKIVVIEN----GHIVETGTHRELIA 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 127 bits (320), Expect = 3e-36
Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 24/231 (10%)
Query: 13 IIEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLD 72
+IE++ ++ +K + L L+L V + + +LGP+G GKT L I G + D
Sbjct: 1 MIEIES---LSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD 53
Query: 73 AGTIKLSFRQISDI-------GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE 125
+G I L + ++D+ ++ Q +L +++++ + M + D + R +
Sbjct: 54 SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---RVLD 110
Query: 126 ILKLLELP-PAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRL 184
+ L++ + LSGG+Q+R++ A +L+ NPK+L+LDEP LDP + + L
Sbjct: 111 TARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 185 KEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ N T++ TH EA+ A I ++ D G+L+ E + E
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMD----GKLIQVGKPEEIFE 217
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 127 bits (321), Expect = 3e-36
Identities = 54/235 (22%), Positives = 99/235 (42%), Gaps = 25/235 (10%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
I ++ + YK + V+L +NL++ + ++ G++G SG GK+TL I +
Sbjct: 2 ITFRN---IRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 57
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G + + ++ +G + Q+ L SI + + +
Sbjct: 58 GQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 125 EILKLLELPPAKKIV------GALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQ 178
+ LSGGQ++RI+ A +L++NPK+LI DE T LD
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 179 IIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+I + ++ G+T+II H + K A I +M G++V + L+
Sbjct: 177 VIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEK----GKIVEQGKHKELLS 226
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 126 bits (317), Expect = 8e-36
Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 27 KKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISD- 85
+ + L L+ V +I L+GP+G GK+TLL + G T G+I+ + + +
Sbjct: 7 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAW 65
Query: 86 --------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AK 136
Y+ Q+ + + + D ++ L L
Sbjct: 66 SATKLALHRAYLSQQQTPPFATPVWHYLTLHQH-----DKTRTELLNDVAGALALDDKLG 120
Query: 137 KIVGALSGGQQRRISFAVSLLH-------NPKLLILDEPTVGLDPILSQIIWDRLKEMAL 189
+ LSGG+ +R+ A +L +LL+LDEP LD + L +
Sbjct: 121 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ 180
Query: 190 NGKTIIITTHYIEEA-KGAHNIGLMRDDQYIGRLVHHDIVESLVEA 234
G I++++H + + AH L++ G+++ E ++
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKG----GKMLASGRREEVLTP 222
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 122 bits (307), Expect = 4e-34
Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 27/238 (11%)
Query: 14 IEVKHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDA 73
++ + V+ AY + +VL+GL + ++ L+GP+G GK+T+ +
Sbjct: 12 VQFQD---VSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 68
Query: 74 GTIKLSFRQISD---------IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124
G + L + + + + QE + G S++E YG T ++I +
Sbjct: 69 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIA-YGLTQKPTMEEITAAAV 126
Query: 125 -----EILKLLELPPAKKI---VGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPIL 176
+ L ++ LSGGQ++ ++ A +L+ P +LILD+ T LD
Sbjct: 127 KSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 177 SQIIWDRLKE-MALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVESLVE 233
+ L E +++++ T ++ + A +I + G + + L+E
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG----GAIREGGTHQQLME 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 109 bits (274), Expect = 2e-29
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 27 KKIGNHVVLKGLNLNVPENK-IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS- 84
K++GN LN++ + LLGP+G GK+ L I G D G ++L+ I+
Sbjct: 9 KRLGNFR----LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP 64
Query: 85 ------DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKK 137
IG++PQ+ AL LS+ Y + + + R +E+ + L + +
Sbjct: 65 LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDR 122
Query: 138 IVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIII 196
LSGG+++R++ A +L+ P+LL+LDEP +D ++ + L+ + I+
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 197 TTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEA 234
TH + EA A + +M + GR+V ++ L A
Sbjct: 183 VTHDLIEAAMLADEVAVMLN----GRIVEKGKLKELFSA 217
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 70.0 bits (170), Expect = 4e-15
Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 22/192 (11%)
Query: 49 GLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108
+ G G GKTTL+ IV R A R
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFW-----------------TEEVRDPETKKRTG 46
Query: 109 GYMFDMTDDQIETRSKEILKLL--ELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILD 166
+ + SK ++ + K++I+D
Sbjct: 47 FRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIID 106
Query: 167 EPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYI--GRLVH 224
E + + M ++ T + I + I
Sbjct: 107 EIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
Query: 225 HDIVESLVEALE 236
I+E ++ LE
Sbjct: 166 DVILEDILSLLE 177
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.9 bits (107), Expect = 3e-06
Identities = 10/59 (16%), Positives = 20/59 (33%)
Query: 152 FAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNI 210
FA++ +LDE LD Q I ++ I+ + + + +
Sbjct: 347 FAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDAL 405
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 35.0 bits (79), Expect = 0.004
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 46 KIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETF 105
++ L GPS GK+T++ C+ R +S P+ + G
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPNL-------HFSVSATTRAPRPGEVDGVDYHFIDP 55
Query: 106 RYYGYMFDMTDDQ 118
+ + D +
Sbjct: 56 TRFQQLIDQGELL 68
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 291 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.92 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.82 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.8 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.49 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.21 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.62 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.59 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 98.04 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.95 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.71 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.69 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.66 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.6 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.58 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.57 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.55 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.48 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.47 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.44 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.35 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.3 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.28 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.27 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.27 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.23 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.2 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.19 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.17 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.15 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.05 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 97.04 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.03 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.0 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.96 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.9 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.89 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.88 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.86 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.85 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.85 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.85 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.85 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.83 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.82 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.81 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.77 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.75 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.74 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.73 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.72 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.71 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.69 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.69 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.68 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.66 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.58 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.58 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.55 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.54 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.52 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.51 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.49 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.46 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.45 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.44 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.41 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.41 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.4 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.39 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.39 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 96.36 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.36 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.35 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.34 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.33 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.32 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.31 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.29 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.27 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.25 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.24 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.22 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.2 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.17 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.16 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.15 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.14 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.13 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.11 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.1 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.1 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.06 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.05 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.05 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.99 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.96 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.96 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.94 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.92 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.92 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.91 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.9 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.9 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.9 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.89 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.89 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.87 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.82 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.81 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.8 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.72 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.7 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.67 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.66 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.66 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.62 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.61 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.6 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.57 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.56 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.55 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.54 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.5 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.5 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.49 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.48 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.48 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.43 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.41 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.38 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.38 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.34 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.33 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.33 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.31 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.31 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.3 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.3 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.28 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.24 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.23 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.23 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.12 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.12 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.11 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.07 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.05 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.99 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.99 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 94.95 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.94 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.94 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.94 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.88 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.84 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.8 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.79 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.78 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.67 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.65 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.64 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.57 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.55 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.5 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.46 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.43 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.41 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.38 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.26 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 94.22 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.17 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.01 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.95 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.93 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.89 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 93.81 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.77 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 93.62 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.5 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.36 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.27 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.23 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.19 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.08 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.87 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.66 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.62 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.53 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.44 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.41 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.38 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.0 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.82 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.74 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.92 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 90.84 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.62 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 90.32 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.02 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.84 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.8 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 89.7 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.58 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.34 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.73 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.21 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 88.15 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.06 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 87.8 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 87.67 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 87.52 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 87.48 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.2 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 86.29 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 85.5 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 85.21 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.43 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 84.09 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 83.5 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 83.37 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 83.13 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 82.76 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 82.63 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 82.52 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 82.13 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.17 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 80.98 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 80.76 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=1.1e-67 Score=469.45 Aligned_cols=211 Identities=27% Similarity=0.421 Sum_probs=194.3
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|+++|++|+||++.||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++ ++||||||+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeec
Confidence 7899999999999999999999999999999999999999999999999999999999999987 359999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+|+.+||+||+.|+...++.++++.++++.++++.++++. .++++.+|||||||||+|||||+++|++|||||||+|
T Consensus 87 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~ 166 (239)
T d1v43a3 87 YAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 166 (239)
T ss_dssp -----CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred hhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCccc
Confidence 999999999999999988888888899999999999999976 7999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 172 LDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||.++.+++++|+++++ .|+|||+||||++++.. |||+++|++|+++++|+++++.+.
T Consensus 167 LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 227 (239)
T d1v43a3 167 LDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 227 (239)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999975 49999999999999976 999999999999999999988654
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.2e-67 Score=466.21 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=202.0
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------------Ce
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------SD 85 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------~~ 85 (291)
.|+++|++|+||+.+||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++ ++
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 48899999999999999999999999999999999999999999999999999999999999875 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
||||||++.+|+.+||+||+.++...++.+.++.++++.++++.+++++ .++++++|||||||||+|||||+++|++||
T Consensus 83 ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl 162 (240)
T d1g2912 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (240)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred ceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999999988888888899999999999999976 689999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||||+||||.++..+++.|++++++ |+|||++|||++++.. |||+++|++|++++.|+++++...
T Consensus 163 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~ 230 (240)
T d1g2912 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (240)
T ss_dssp EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred ecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999754 9999999999999977 999999999999999999987653
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-67 Score=465.32 Aligned_cols=211 Identities=28% Similarity=0.430 Sum_probs=162.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|+++|++|+||++.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++ ++||||||+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 5789999999999999999999999999999999999999999999999999999999999886 469999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+|+.+||+||+.++...++.++++.++++.++++.+++.. .++++++|||||||||+|||||+++|++|||||||+|
T Consensus 81 ~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~ 160 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN 160 (232)
T ss_dssp CCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTT
T ss_pred cccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 999999999999999888778888888899999999999976 7999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 172 LDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||.++.++++.|+++. +.|+|||++|||++++.. |||+++|++|+++++|+++++.+.
T Consensus 161 LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 161 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 99999999999999996 569999999999999977 999999999999999999988653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-66 Score=462.58 Aligned_cols=212 Identities=28% Similarity=0.463 Sum_probs=200.7
Q ss_pred eEEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec------------C
Q psy6612 19 SVAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------------S 84 (291)
Q Consensus 19 ~l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------------~ 84 (291)
.|+++|++|+| |...||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++ +
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 47899999999 668999999999999999999999999999999999999999999999999876 3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEE
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLL 163 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ll 163 (291)
+||||||++.+|+.+||+||+.|+...++.++++.++++.++++.++++. .++++++|||||||||+|||||+++|++|
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ll 162 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccce
Confidence 69999999999999999999999988888888889999999999999976 79999999999999999999999999999
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 164 ILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 164 llDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||||+||||.++.++++.|+++++ .|+|||++|||++++.. |||+++|++|++++.|+++++.+.
T Consensus 163 llDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~ 231 (242)
T d1oxxk2 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231 (242)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred eecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999974 49999999999999966 999999999999999999988654
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-66 Score=459.79 Aligned_cols=211 Identities=26% Similarity=0.448 Sum_probs=199.0
Q ss_pred eEEEEeEEEEECCE----eeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGNH----VVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~~----~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++|+|+.. .||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 68999999999653 689999999999999999999999999999999999999999999999987
Q ss_pred -CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCC
Q psy6612 84 -SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPK 161 (291)
Q Consensus 84 -~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~ 161 (291)
++||||||++.+++.+||+||+.++...++.+.++.++++.++++.+||++ .++++++|||||||||+|||||+++|+
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~ 160 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence 259999999999999999999999888888888888999999999999976 799999999999999999999999999
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
+|||||||+|||+.++..++++|++++++ |+|||++|||++++.. |||+++|++|+++++|+++++.+
T Consensus 161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred eEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999755 9999999999999976 99999999999999999988653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.8e-65 Score=452.41 Aligned_cols=207 Identities=29% Similarity=0.442 Sum_probs=193.6
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQ 91 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q 91 (291)
||+++|++|+|++ .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++ ++||||||
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 6889999999987 589999999999999999999999999999999999999999999999997 35999999
Q ss_pred CCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCC
Q psy6612 92 ELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTV 170 (291)
Q Consensus 92 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPts 170 (291)
++.+|+++||+||+.|+...++.+. ++++.++++.+++.+ .++++.+|||||||||+|||||+++|++|||||||+
T Consensus 80 ~~~l~~~~tV~enl~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts 156 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRMKKIKD---PKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCC---HHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred ccccCccccHHHHHHHHHhhccccH---HHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCc
Confidence 9999999999999999877766554 357888999999976 799999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhH-hCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 171 GLDPILSQIIWDRLKEMA-LNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 171 gLD~~~~~~i~~~l~~l~-~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
||||.++..++++|++++ +.|.|||++|||++++.. |||+++|++|+++++|+++++.+
T Consensus 157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~ 217 (229)
T d3d31a2 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999996 459999999999999977 99999999999999999988764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-64 Score=453.87 Aligned_cols=213 Identities=25% Similarity=0.398 Sum_probs=199.5
Q ss_pred ceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------------
Q psy6612 18 HSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------------- 83 (291)
Q Consensus 18 ~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------------- 83 (291)
|.|+++|++|+||++.||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++
T Consensus 1 n~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred CeEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 468999999999999999999999999999999999999999999999999999999999999986
Q ss_pred --------CeEEEEcCCCCCCCCCCHHHHHHHh-ccccCCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHH
Q psy6612 84 --------SDIGYMPQELALHGELSIRETFRYY-GYMFDMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISF 152 (291)
Q Consensus 84 --------~~ig~v~q~~~l~~~ltv~enl~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~i 152 (291)
++||||||++.+++.+||+||+.++ ....+.+..+.++++.++++.+++.. .++++++|||||||||+|
T Consensus 81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i 160 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160 (258)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence 2499999999999999999999875 34456677888889999999999975 478899999999999999
Q ss_pred HHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 153 AVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 153 Aral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
||||+.+|++|||||||+|||+.++.+++++|++++++|+|||+||||++++.. ||||++|++|+|+++|+++++...
T Consensus 161 AraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~ 239 (258)
T d1b0ua_ 161 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 239 (258)
T ss_dssp HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999999999889999999999999976 999999999999999999998754
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.5e-64 Score=445.89 Aligned_cols=206 Identities=29% Similarity=0.406 Sum_probs=188.7
Q ss_pred eEEEEeEEEEECC----EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-----------
Q psy6612 19 SVAVTSAYKKIGN----HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----------- 83 (291)
Q Consensus 19 ~l~~~~l~~~~~~----~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----------- 83 (291)
||+++|++|+|+. ..||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 6889999999953 3589999999999999999999999999999999999999999999999987
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhcccc---CCChHHHHHHHHHHHHHcCCCC--CCCCcCcCChhHHHHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMF---DMTDDQIETRSKEILKLLELPP--AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LSgGqkQrv~iAral 156 (291)
++||||||++.+++.+||+||+.++.... +.+.++..+++.++++.+++.+ .+++|.+|||||||||+|||||
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL 160 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence 24999999999999999999999865443 4466777788999999999964 5899999999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEech
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVH 224 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~ 224 (291)
+++|++|||||||+||||.++..++++|+++.+ .|+|||++|||+++++.|||+++|++|+|+++|.+
T Consensus 161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999975 48999999999998866999999999999998864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.9e-64 Score=447.52 Aligned_cols=220 Identities=28% Similarity=0.449 Sum_probs=197.9
Q ss_pred cceEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eE
Q psy6612 17 KHSVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DI 86 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~i 86 (291)
+.+|+++|++|+||+..||+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++. .+
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 34799999999999999999999999999999999999999999999999999999999999999872 39
Q ss_pred EEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHc-CCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEE
Q psy6612 87 GYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLL-ELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLI 164 (291)
Q Consensus 87 g~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~lll 164 (291)
+|+||++.+|+.+||+||+.+....+. .....++.++++++.+ ++.. .++++++|||||||||+|||||+++|++||
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLl 162 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM 162 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cccCcccccCCcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEee
Confidence 999999999999999999987654433 3444556677777776 5654 789999999999999999999999999999
Q ss_pred EcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 165 LDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 165 lDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
|||||+||||.++.+++++|++++++|+|||++|||++++.. |||+++|++|+++++|+++++.++ +.+.+.|
T Consensus 163 lDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~--~~v~~~y 236 (240)
T d1ji0a_ 163 MDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN--EMVRKAY 236 (240)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC--HHHHHHH
T ss_pred ecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC--HHHHHHh
Confidence 999999999999999999999999889999999999999976 999999999999999999998765 4455554
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-63 Score=442.41 Aligned_cols=212 Identities=28% Similarity=0.462 Sum_probs=201.9
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec--------CeEEEEc
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI--------SDIGYMP 90 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~--------~~ig~v~ 90 (291)
.|+++|++|+||+++||+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++ +.+||+|
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 47899999999999999999999999999999999999999999999999999999999999987 5699999
Q ss_pred CCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccC
Q psy6612 91 QELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPT 169 (291)
Q Consensus 91 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPt 169 (291)
|++.+++++|+.||+.+...+++.+..+.++.++++++.+++.+ .++++++||||||||++|||||+++|++|||||||
T Consensus 82 q~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt 161 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 161 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred eccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 99999999999999999888888888888889999999999976 68999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHH
Q psy6612 170 VGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 170 sgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+||||.++.+++++|++++++|+|||++|||++++.. |||+++|++|+++++|+++++.+.
T Consensus 162 ~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 162 SGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999889999999999999976 999999999999999999988653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.8e-63 Score=444.70 Aligned_cols=213 Identities=24% Similarity=0.410 Sum_probs=195.2
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC----------eEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS----------DIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~----------~ig~ 88 (291)
+|+++|++|+||+.+||+||||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++. .|+|
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCc
Confidence 789999999999999999999999999999999999999999999999999999999999999872 3999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccc-------------cCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYM-------------FDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAV 154 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~-------------~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAr 154 (291)
+||++.+|+.+||+||+.++... +....++..+++.++++.+++.. .++++++|||||||||+|||
T Consensus 84 v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAr 163 (254)
T d1g6ha_ 84 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 163 (254)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred cCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHH
Confidence 99999999999999999875321 11233455678889999999976 68999999999999999999
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHH
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESL 231 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~ 231 (291)
||+++|++|||||||+||||.++.+++++|++++++|+|||++|||++++.. ||||++|++|+++++|+++++..+.
T Consensus 164 aL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~~~ 241 (254)
T d1g6ha_ 164 ALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241 (254)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHHHH
T ss_pred HHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhhcc
Confidence 9999999999999999999999999999999999889999999999999976 9999999999999999998876543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.4e-61 Score=427.27 Aligned_cols=204 Identities=26% Similarity=0.449 Sum_probs=188.5
Q ss_pred EEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------CeEEEEcCC
Q psy6612 20 VAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI-------SDIGYMPQE 92 (291)
Q Consensus 20 l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~-------~~ig~v~q~ 92 (291)
|++ ++.|+||+..+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++ ++||||||+
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~ 78 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeeccc
Confidence 566 57899998775 8999995 689999999999999999999999999999999999987 469999999
Q ss_pred CCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCC
Q psy6612 93 LALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVG 171 (291)
Q Consensus 93 ~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsg 171 (291)
+.+|+.+||+||+.|+. ...++.+.++++.++++.+|+++ .++++++|||||||||+|||||+++|++|||||||+|
T Consensus 79 ~~l~~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~ 156 (240)
T d2onka1 79 YALFPHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSA 156 (240)
T ss_dssp CCCCTTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSS
T ss_pred hhhcccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcccc
Confidence 99999999999999864 34567777889999999999976 7999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHH
Q psy6612 172 LDPILSQIIWDRLKEMALN-GKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 172 LD~~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
|||.++..+++.|++++++ |.|||++|||++++.. |||+++|++|++++.|+++++.+
T Consensus 157 LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 157 VDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 9999999999999999754 9999999999999977 99999999999999999998865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-58 Score=414.59 Aligned_cols=215 Identities=21% Similarity=0.312 Sum_probs=182.5
Q ss_pred ccccceEEEEeEEEEECC---EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec-------
Q psy6612 14 IEVKHSVAVTSAYKKIGN---HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI------- 83 (291)
Q Consensus 14 ~~~~~~l~~~~l~~~~~~---~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~------- 83 (291)
.+++..|+++|++++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++
T Consensus 6 ~~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~ 85 (251)
T d1jj7a_ 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85 (251)
T ss_dssp SCCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHH
T ss_pred ccccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHH
Confidence 345677999999999965 3599999999999999999999999999999999999999999999999987
Q ss_pred --CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH-----HHHHHHHc--CCCC-CCCCcCcCChhHHHHHHHH
Q psy6612 84 --SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR-----SKEILKLL--ELPP-AKKIVGALSGGQQRRISFA 153 (291)
Q Consensus 84 --~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iA 153 (291)
+.++||||++.+|+. |++||+.++.... .......+. +.+.++.+ +++. .++.+.+|||||||||+||
T Consensus 86 ~r~~i~~v~Q~~~lf~~-tv~eni~~g~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 86 LHRQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALA 163 (251)
T ss_dssp HHHHEEEECSSCCCCSS-BHHHHHHCSCSSC-CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHH
T ss_pred HHHHhhhccccccccCc-chhhhhhhhhccc-chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEe
Confidence 359999999999875 9999998753221 122222211 12233433 2222 4567789999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+++|++||||||||+||+.++..+++.|+++.+ .++|+|+||||++.++.||||++|++|+|+++|+++++.+.
T Consensus 164 Ral~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~ 241 (251)
T d1jj7a_ 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK 241 (251)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred eccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999874 48999999999998878999999999999999999998764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-57 Score=406.49 Aligned_cols=207 Identities=25% Similarity=0.414 Sum_probs=176.1
Q ss_pred EEEEeEEEEE--CCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 20 VAVTSAYKKI--GNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 20 l~~~~l~~~~--~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
|+++|++++| +++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++ +.|||
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 6789999999 456799999999999999999999999999999999999999999999999987 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHH--HHHHcC-CCC-----CCCCcCcCChhHHHHHHHHHHHhcCC
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKE--ILKLLE-LPP-----AKKIVGALSGGQQRRISFAVSLLHNP 160 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~--~l~~~~-l~~-----~~~~~~~LSgGqkQrv~iAral~~~p 160 (291)
|||++.+|+. |++||+.++... ...++..+.++. +.+.+. +.. ....+.+|||||||||+|||||+++|
T Consensus 82 v~Q~~~lf~~-Ti~eNi~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 82 VLQDNVLLNR-SIIDNISLANPG--MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp ECSSCCCTTS-BHHHHHCTTSTT--CCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EecccccCCc-cccccccccCcc--ccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 9999998875 999999875322 233332222221 122221 111 24556789999999999999999999
Q ss_pred CEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 161 KLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 161 ~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
++||||||||+||+.++..+++.|+++. +++|+|+|||+++.+..||+|++|++|+|+++|+++++.++
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~ 227 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSE 227 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHS
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999986 47999999999999877999999999999999999998764
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-58 Score=412.07 Aligned_cols=205 Identities=27% Similarity=0.427 Sum_probs=175.8
Q ss_pred eEEEEeEEEEECC-EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------CeEEE
Q psy6612 19 SVAVTSAYKKIGN-HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SDIGY 88 (291)
Q Consensus 19 ~l~~~~l~~~~~~-~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ig~ 88 (291)
||+++|++++|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++ ++|||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 6899999999954 6899999999999999999999999999999999999999999999999986 35999
Q ss_pred EcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-CC----CCcCcCChhHHHHHHHHHHH
Q psy6612 89 MPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-AK----KIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 89 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~~----~~~~~LSgGqkQrv~iAral 156 (291)
|||++.+|+. |++||+.+.... ........ +.++..++. . .+ ....+|||||||||+|||||
T Consensus 81 v~Q~~~lf~~-ti~eNi~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal 154 (242)
T d1mv5a_ 81 VSQDSAIMAG-TIRENLTYGLEG-DYTDEDLW----QVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154 (242)
T ss_dssp ECCSSCCCCE-EHHHHTTSCTTS-CSCHHHHH----HHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EccccccCCc-chhhheeccccc-ccchhhHH----HHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 9999999987 999999764321 12232222 223322221 1 12 33457999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++|++||||||||+||+.++..+++.|+++. +|+|||++||+++.+..||||++|++|+|+++|+++++.+.
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~ 227 (242)
T d1mv5a_ 155 LRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (242)
T ss_dssp HHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred hcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999999997 58999999999999988999999999999999999998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-56 Score=400.09 Aligned_cols=212 Identities=24% Similarity=0.392 Sum_probs=180.2
Q ss_pred ccceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------C
Q psy6612 16 VKHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------S 84 (291)
Q Consensus 16 ~~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~ 84 (291)
.+..|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++ +
T Consensus 10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 89 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRN 89 (253)
T ss_dssp CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHH
T ss_pred CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhh
Confidence 3446899999999964 4699999999999999999999999999999999999999999999999987 2
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH-----HHHHHc--CCCC-CCCCcCcCChhHHHHHHHHHHH
Q psy6612 85 DIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK-----EILKLL--ELPP-AKKIVGALSGGQQRRISFAVSL 156 (291)
Q Consensus 85 ~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~-~~~~~~~LSgGqkQrv~iAral 156 (291)
.++|+||++.+|.. |+++|+.++. ....+.++..+.++ +.++.+ |++. ....+.+|||||||||+|||||
T Consensus 90 ~i~~v~Q~~~l~~~-ti~~n~~~~~-~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 90 QVALVSQNVHLFND-TVANNIAYAR-TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp TEEEECSSCCCCSS-BHHHHHHTTT-TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEEEeeccccCCc-chhhhhhhcC-cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence 59999999999876 9999998752 22333333332221 223333 2322 3456788999999999999999
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
+++|++||||||||+||+.++..+++.|+++.+ ++|+|+||||++.+..||+|++|++|+|++.|+++++.+.
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~ 240 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ 240 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999974 7999999999998877999999999999999999998764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=7.1e-56 Score=397.58 Aligned_cols=206 Identities=26% Similarity=0.381 Sum_probs=178.2
Q ss_pred cceEEEEeEEEEECC--EeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec---------Ce
Q psy6612 17 KHSVAVTSAYKKIGN--HVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI---------SD 85 (291)
Q Consensus 17 ~~~l~~~~l~~~~~~--~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~---------~~ 85 (291)
+..|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ +.
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence 446999999999965 5799999999999999999999999999999999999999999999999987 35
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCC-------C-C----CCCcCcCChhHHHHHHHH
Q psy6612 86 IGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELP-------P-A----KKIVGALSGGQQRRISFA 153 (291)
Q Consensus 86 ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~-~----~~~~~~LSgGqkQrv~iA 153 (291)
|+||||++.+|+. |++||+.++.. ....+ .+.++++..++. . . .....+||||||||++||
T Consensus 94 i~~v~Q~~~lf~~-Ti~eNi~~g~~--~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 94 IGLVQQDNILFSD-TVKENILLGRP--TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp EEEECSSCCCCSS-BHHHHHGGGCS--SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eeeeeccccCCCC-CHHHHHhccCc--CCCHH----HHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence 9999999999875 99999987532 12233 233444444431 1 2 234567999999999999
Q ss_pred HHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHHH
Q psy6612 154 VSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVES 230 (291)
Q Consensus 154 ral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 230 (291)
|||+++|++||||||||+||+.++..+++.|.++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++.+.
T Consensus 167 Ral~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~ 242 (255)
T d2hyda1 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK 242 (255)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999874 7899999999999888999999999999999999998764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-54 Score=383.70 Aligned_cols=209 Identities=21% Similarity=0.317 Sum_probs=183.7
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecC---------eEEEE
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQIS---------DIGYM 89 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~---------~ig~v 89 (291)
+|+++|++++| +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++. ..+|+
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~ 77 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYL 77 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEE
T ss_pred EEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceee
Confidence 67889997654 699999999999999999999999999999999975 68999999999862 48999
Q ss_pred cCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhc-------CCC
Q psy6612 90 PQELALHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLH-------NPK 161 (291)
Q Consensus 90 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~-------~p~ 161 (291)
+|+.......++++++.+.... +...+.++++++.+++.. .++++++|||||||||+|||||++ +|+
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ 152 (231)
T d1l7vc_ 78 SQQQTPPFATPVWHYLTLHQHD-----KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 152 (231)
T ss_dssp CSCCCCCSSCBHHHHHHHHCSC-----TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred eccccCCccccHHHHhhhccch-----hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence 9998777778999998765321 122456788899999976 789999999999999999999997 779
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhh-hCeEEEEeCCEEEEEechhHHHHHHHHHHHHHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKG-AHNIGLMRDDQYIGRLVHHDIVESLVEALEDAL 239 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~-~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 239 (291)
+|||||||+|||+.++..++++|++++++|+|||++|||++++.. |||+++|++|+++++|+++++.+. +.+.+.|
T Consensus 153 llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~--~~l~~~y 229 (231)
T d1l7vc_ 153 LLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP--PNLAQAY 229 (231)
T ss_dssp EEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH--HHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC--hHHHHhh
Confidence 999999999999999999999999999889999999999999966 999999999999999999998754 4555555
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.8e-52 Score=361.19 Aligned_cols=191 Identities=22% Similarity=0.351 Sum_probs=167.4
Q ss_pred eEEEEeEEEEECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCC
Q psy6612 19 SVAVTSAYKKIGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELA 94 (291)
Q Consensus 19 ~l~~~~l~~~~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~ 94 (291)
.|+++|+++.|+ +++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++ .+++|+||+..
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeeccc
Confidence 478999999996 5799999999999999999999999999999999999999999999999987 36999999999
Q ss_pred CCCCCCHHHHHHHhccccCCChHHHHHHHHHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 95 LHGELSIRETFRYYGYMFDMTDDQIETRSKEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 95 l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
++..+|+.+++.+....++.... +..+.++++.+++.+.++++++|||||||||+|||||+++|+++||||||+|||+
T Consensus 81 ~~~~~t~~~~l~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~ 158 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVASLYGVKVN--KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 158 (200)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCC--HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred CCCCcCHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCH
Confidence 99999999999887666654322 2346677888887666678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhC-CcEEEEEccCHhHHhhhCeEEEEeC
Q psy6612 175 ILSQIIWDRLKEMALN-GKTIIITTHYIEEAKGAHNIGLMRD 215 (291)
Q Consensus 175 ~~~~~i~~~l~~l~~~-g~tii~~tHd~~~~~~~d~i~~l~~ 215 (291)
.++..+++.|.++.++ +.+||.++|++ ..||++.+|++
T Consensus 159 ~~~~~i~~~l~~~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 159 DSKHKVLKSILEILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp TTHHHHHHHHHHHHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEechh---hhcchhhheee
Confidence 9999999999998744 56666666665 35999988864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-52 Score=380.21 Aligned_cols=193 Identities=24% Similarity=0.303 Sum_probs=160.3
Q ss_pred ECCEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHh
Q psy6612 29 IGNHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYY 108 (291)
Q Consensus 29 ~~~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~ 108 (291)
|+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+ ++|+||++.+|+. |++||+.++
T Consensus 46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~----i~~v~Q~~~l~~~-tv~eni~~~ 120 (281)
T d1r0wa_ 46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR----VSFCSQFSWIMPG-TIKENIIFG 120 (281)
T ss_dssp HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC----EEEECSSCCCCSE-EHHHHHTTT
T ss_pred CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE----EEEEeccccccCc-eeecccccc
Confidence 46789999999999999999999999999999999999999999999999984 9999999999886 999999765
Q ss_pred ccccCCChHHHHHHHHH---HHHHcCCCC-----CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHH
Q psy6612 109 GYMFDMTDDQIETRSKE---ILKLLELPP-----AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQII 180 (291)
Q Consensus 109 ~~~~~~~~~~~~~~~~~---~l~~~~l~~-----~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i 180 (291)
... .....+..+.. ......+.. ..+...+|||||||||+|||||+++|++|||||||++||+.++..+
T Consensus 121 ~~~---~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i 197 (281)
T d1r0wa_ 121 VSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 197 (281)
T ss_dssp SCC---CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHH
T ss_pred ccc---cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHH
Confidence 322 22222211111 111122221 2345567999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEEeCCEEEEEechhHHHH
Q psy6612 181 WDRLKEMALNGKTIIITTHYIEEAKGAHNIGLMRDDQYIGRLVHHDIVE 229 (291)
Q Consensus 181 ~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (291)
++.+......++|+|++||+++.+..||||++|++|++++.|+++++..
T Consensus 198 ~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 198 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp HHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 8865444446899999999999887799999999999999999999865
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.80 E-value=1.4e-21 Score=161.83 Aligned_cols=154 Identities=15% Similarity=0.052 Sum_probs=101.8
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCCccEEEECCEec----CeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQI----SDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~----~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 123 (291)
++|+||||||||||+++|+|.++|+.|.+.+.+.+. .+.++......... +. +..........
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~------ 69 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKK--KI-----FSSKFFTSKKL------ 69 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCE--EE-----EEETTCCCSSE------
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHH--HH-----Hhhhhhhhhhh------
Confidence 789999999999999999999999999999877543 12222111100000 00 00000000000
Q ss_pred HHHHHHcCCCCCCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHh-CCcEEEEEccCHh
Q psy6612 124 KEILKLLELPPAKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMAL-NGKTIIITTHYIE 202 (291)
Q Consensus 124 ~~~l~~~~l~~~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~-~g~tii~~tHd~~ 202 (291)
.... ..+....++|+|+++|.++++++..+|+++++|||.... .....+.+.+.++.+ .+.++|+++|+..
T Consensus 70 ---~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~~ 141 (178)
T d1ye8a1 70 ---VGSY---GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIRD 141 (178)
T ss_dssp ---ETTE---EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSSC
T ss_pred ---hhhh---hcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccc--hhhHHHHHHHHHHhccCCCEEEEEEccHH
Confidence 0000 012233468999999999999999999999999985443 344566677777654 4789999999987
Q ss_pred HHhhhCeEEEEeCCEEEEEe
Q psy6612 203 EAKGAHNIGLMRDDQYIGRL 222 (291)
Q Consensus 203 ~~~~~d~i~~l~~G~i~~~~ 222 (291)
....|+++..+.+|+++.-.
T Consensus 142 ~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 142 VHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp CSHHHHHHHTCTTCEEEECC
T ss_pred HHHhhceEEEEeCCEEEEEC
Confidence 65669999999999987543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=5.7e-13 Score=118.51 Aligned_cols=78 Identities=23% Similarity=0.237 Sum_probs=66.5
Q ss_pred CcCcCChhHHHHHHHHHH----HhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEE-
Q psy6612 138 IVGALSGGQQRRISFAVS----LLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGL- 212 (291)
Q Consensus 138 ~~~~LSgGqkQrv~iAra----l~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~- 212 (291)
.+..+|+|+|+...++.. ....|.++++|||-++|+|..+..+.+.|++..+ +.-||++||.+..+..+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVMEAADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGGGCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHhcccEEEE
Confidence 456899999999877665 3556889999999999999999999999999864 5789999999999988998855
Q ss_pred -EeCC
Q psy6612 213 -MRDD 216 (291)
Q Consensus 213 -l~~G 216 (291)
+.+|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 5555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.8e-11 Score=112.36 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=65.4
Q ss_pred CcCcCChhHHHHHHHHHHH----hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHHhhhCeEEEE
Q psy6612 138 IVGALSGGQQRRISFAVSL----LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEAKGAHNIGLM 213 (291)
Q Consensus 138 ~~~~LSgGqkQrv~iAral----~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~~~~d~i~~l 213 (291)
+...||||||.++++|..+ ..++++++||||+++||+..+..+.++|.++...+.-+|++||++..+..||+++.+
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 4467899999998877543 467889999999999999999999999999865566799999999999889997655
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.62 E-value=2e-07 Score=79.72 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=38.4
Q ss_pred cCCCEEEEcccCCCCCHHHHHHHHHHH-HHhHhCCcEEEEEccCHhHHhh
Q psy6612 158 HNPKLLILDEPTVGLDPILSQIIWDRL-KEMALNGKTIIITTHYIEEAKG 206 (291)
Q Consensus 158 ~~p~llllDEPtsgLD~~~~~~i~~~l-~~l~~~g~tii~~tHd~~~~~~ 206 (291)
.+..++|+||+..|=|+.....+...+ ..+.+.+..++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhhh
Confidence 455699999999999998777666555 4556667899999999887653
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.5e-07 Score=81.15 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=37.2
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHH-HHHHhHhC-CcEEEEEccCHhHHh
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWD-RLKEMALN-GKTIIITTHYIEEAK 205 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~-~l~~l~~~-g~tii~~tHd~~~~~ 205 (291)
+.+..++|+||+..|=++.....+.. .+..+..+ +..++++||..+...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence 33445999999999999998887754 45667544 568899999876653
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=1.5e-07 Score=76.00 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=30.0
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+++.+|++.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467788888877 99999999999999999997543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.95 E-value=2.6e-05 Score=67.03 Aligned_cols=152 Identities=16% Similarity=0.150 Sum_probs=77.3
Q ss_pred CEeeEeeeeEEEeCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHH-Hhc
Q psy6612 31 NHVVLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFR-YYG 109 (291)
Q Consensus 31 ~~~~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~-~~~ 109 (291)
+.+.|+++..-+.+|+++.|.|++|+|||||+.-++--.....| .++.|+.-+ ++..+... +..
T Consensus 21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g---------~~v~~~s~E------~~~~~~~~r~~~ 85 (277)
T d1cr2a_ 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG---------KKVGLAMLE------ESVEETAEDLIG 85 (277)
T ss_dssp SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC---------CCEEEEESS------SCHHHHHHHHHH
T ss_pred CchhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcc---------cceeEeeec------cchhhHHhHHHH
Confidence 34456666555899999999999999999998666532111122 235554422 45555432 111
Q ss_pred cccCCCh---HHH------HHHHHHHHHHc-CCCCCC--CCcCcCChhHHHHHHHHH--HHhcCCCEEEEcccCCCCCH-
Q psy6612 110 YMFDMTD---DQI------ETRSKEILKLL-ELPPAK--KIVGALSGGQQRRISFAV--SLLHNPKLLILDEPTVGLDP- 174 (291)
Q Consensus 110 ~~~~~~~---~~~------~~~~~~~l~~~-~l~~~~--~~~~~LSgGqkQrv~iAr--al~~~p~llllDEPtsgLD~- 174 (291)
...+.+. +.. ..+..++++.. +..... .....++.. ..+...+ .-..+|+++++|= ..-+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~-l~~l~~~ 162 (277)
T d1cr2a_ 86 LHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDH-ISIVVSA 162 (277)
T ss_dssp HHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEE-EEC----
T ss_pred HhhcCCchhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHH--HHHHHhhhhhhccCcceEEEcc-ccccccc
Confidence 1111111 000 01223333332 211111 112223333 2222222 3356899999983 223322
Q ss_pred -------HHHHHHHHHHHHhHh-CCcEEEEEccC
Q psy6612 175 -------ILSQIIWDRLKEMAL-NGKTIIITTHY 200 (291)
Q Consensus 175 -------~~~~~i~~~l~~l~~-~g~tii~~tHd 200 (291)
.....++..|+++++ .+.+|++++|-
T Consensus 163 ~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ccccchhHHHHHHHHHHHHHhhhccccceeeccc
Confidence 334556777888874 48999999884
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=8.7e-05 Score=63.33 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=34.0
Q ss_pred HHhcCCCEEEEcccCC-----CCCHHHHHHHHHHHHHhHh-CCcEEEEEccC
Q psy6612 155 SLLHNPKLLILDEPTV-----GLDPILSQIIWDRLKEMAL-NGKTIIITTHY 200 (291)
Q Consensus 155 al~~~p~llllDEPts-----gLD~~~~~~i~~~l~~l~~-~g~tii~~tHd 200 (291)
.-..+|+++++|--++ --|......++..|+.+++ .+.+||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995432 1266677788888888874 48999999884
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.69 E-value=9.3e-06 Score=65.93 Aligned_cols=26 Identities=35% Similarity=0.664 Sum_probs=23.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
|.+++|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999987654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.66 E-value=1e-05 Score=63.73 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999986543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=1.2e-05 Score=68.30 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 78 (291)
+|+..+++|++|+|||||+|.|.|-.....|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58999999999999999999999987777787753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.60 E-value=1.6e-05 Score=62.91 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.|+++.|.||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999865
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=5.6e-06 Score=65.66 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=26.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 78 (291)
.+.|.||+|+|||||++.++..+....+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999988766555543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.57 E-value=1.8e-05 Score=71.28 Aligned_cols=28 Identities=25% Similarity=0.676 Sum_probs=23.5
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
.+++..+.+.+|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3455656699999999999999999984
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.9e-05 Score=62.47 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+.++.|.||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.48 E-value=0.00047 Score=57.34 Aligned_cols=147 Identities=14% Similarity=0.042 Sum_probs=77.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcC-CCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGR-NTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIE 120 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl-~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~ 120 (291)
+++|.++.|.||+|||||||+.-++-- .+. | ..+.|+.-+ .+..+....... ++....+
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~--~---------~~~~~is~e------~~~~~~~~~~~~-~~~~~~~-- 82 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACAN--K---------ERAILFAYE------ESRAQLLRNAYS-WGMDFEE-- 82 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT--T---------CCEEEEESS------SCHHHHHHHHHT-TSCCHHH--
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHh--c---------cccceeecc------CCHHHHHHHHHH-cCCChHH--
Confidence 789999999999999999998555433 221 1 123343322 344444333221 2222211
Q ss_pred HHHHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHH-HhcCCCEEEEcccC---CCCCHHHHHHHHHHHHHhH-hCCcEE
Q psy6612 121 TRSKEILKLLELPP-AKKIVGALSGGQQRRISFAVS-LLHNPKLLILDEPT---VGLDPILSQIIWDRLKEMA-LNGKTI 194 (291)
Q Consensus 121 ~~~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAra-l~~~p~llllDEPt---sgLD~~~~~~i~~~l~~l~-~~g~ti 194 (291)
+...+... .+.........+. .-.+..+ --.+|++++.|--+ .+.+......+...+.+++ +.+.++
T Consensus 83 ------~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (242)
T d1tf7a2 83 ------MERQNLLKIVCAYPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITG 155 (242)
T ss_dssp ------HHHTTSEEECCCCGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred ------HhhcCceEEEEeecchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 11122211 1222222332222 2222222 34579999988643 3446666566666665554 568898
Q ss_pred EEEccCHh----------HHhh-hCeEEEEeC
Q psy6612 195 IITTHYIE----------EAKG-AHNIGLMRD 215 (291)
Q Consensus 195 i~~tHd~~----------~~~~-~d~i~~l~~ 215 (291)
+++.|--. .+.. ||-++.++.
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 156 LFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp EEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred EEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 88887421 1223 788877753
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.47 E-value=1.5e-05 Score=63.60 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.3
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.+++|+|++|||||||++-|...++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999888776654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.45 E-value=1.3e-05 Score=68.50 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
+|+..+++|++|+|||||+|.|.|-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 6889999999999999999999998776778776
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.44 E-value=3.2e-05 Score=61.01 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+|-++.|+|++||||||+-+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998655
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.35 E-value=4.2e-05 Score=60.37 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.++|.||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999865
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=5.5e-05 Score=63.09 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.|.++.|+||+|||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999887654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.30 E-value=6.5e-05 Score=59.03 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.6
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.+++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.28 E-value=6.7e-05 Score=59.14 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|-.++|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.27 E-value=6.9e-05 Score=59.32 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=23.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+++++|.|+.||||||+.+.|+-.+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999876544
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.27 E-value=0.00047 Score=57.66 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=52.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRS 123 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~ 123 (291)
...+++++||+|+||||.+-=|+-.+. .. | ++++++.-|.. .+ ...+..
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~------g---~kV~lit~Dt~-----R~----------------ga~eQL 59 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KK------G---FKVGLVGADVY-----RP----------------AALEQL 59 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HT------T---CCEEEEECCCS-----SH----------------HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HC------C---CceEEEEeecc-----cc----------------chhHHH
Confidence 446899999999999998744554332 12 2 34666654421 11 112334
Q ss_pred HHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCH
Q psy6612 124 KEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDP 174 (291)
Q Consensus 124 ~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~ 174 (291)
..+.+.+|++- .-....++..-.++ ++..+...+-+++|.| |+|..+
T Consensus 60 ~~~a~~l~v~~~~~~~~~~~~~~~~~--a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 60 QQLGQQIGVPVYGEPGEKDVVGIAKR--GVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp HHHHHHHTCCEECCTTCCCHHHHHHH--HHHHHHHTTCSEEEEE--CCCSCC
T ss_pred HHhccccCcceeecccchhhhHHHHH--HHHHhhccCCceEEEe--cCCcCc
Confidence 45566667653 22233344332222 5566677889999999 888654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.23 E-value=7.7e-05 Score=57.71 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.1
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~g 67 (291)
+++.|.||+|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999997753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=8e-05 Score=57.42 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.19 E-value=0.0012 Score=52.98 Aligned_cols=43 Identities=16% Similarity=0.032 Sum_probs=28.9
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
+-.-+|+| .++++...+..++++.++.. -...++....+.+.+
T Consensus 64 ~g~~vIiD--~t~~~~~~R~~~~~~a~~~~-~~~~~v~l~~~~e~~ 106 (172)
T d1yj5a2 64 QGKRVVID--NTNPDVPSRARYIQCAKDAG-VPCRCFNFCATIEQA 106 (172)
T ss_dssp TTCCEEEE--SCCCSHHHHHHHHHHHHHHT-CCEEEEEECCCHHHH
T ss_pred CCCCceee--CcCCCHHHHHHHHHHHHhcC-CCEEEEEeCCCHHHH
Confidence 33457788 56788888888887777653 234566666677766
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.17 E-value=8.5e-05 Score=59.58 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++||-||.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999986544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.17 E-value=9.6e-05 Score=57.67 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.6
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++.|.||.||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=7.7e-05 Score=59.92 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.10 E-value=0.00011 Score=57.58 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.1
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|+||.||||||+.+.|+--+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999997543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.00028 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.613 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+||+|..|+|||||++.|+|-.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.04 E-value=0.00044 Score=59.54 Aligned_cols=28 Identities=36% Similarity=0.574 Sum_probs=23.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.+..-+.|.||.|+|||+|.+++++..
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3445558899999999999999999876
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.03 E-value=0.00015 Score=60.34 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999998753
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.00 E-value=0.00015 Score=58.90 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||+|.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 39999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.00018 Score=58.42 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.90 E-value=0.00018 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.|+|||||++.|.|-.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999853
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.90 E-value=0.00025 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl 68 (291)
..+.|+||+|+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988753
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.0003 Score=56.17 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
+++|+++.|.||+|||||||.-.++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999876664
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.88 E-value=0.00026 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+|+.|||||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00025 Score=58.31 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++||-|+.||||||+.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999877653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.86 E-value=0.00015 Score=58.21 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.5
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
+||+|+.++|||||+|.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00028 Score=55.92 Aligned_cols=22 Identities=36% Similarity=0.718 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
+++|+|..|+|||||+|.|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.85 E-value=0.00025 Score=57.87 Aligned_cols=21 Identities=48% Similarity=0.684 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+||+|||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999988654
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00023 Score=54.73 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|++|+|||||++.+.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999998753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.85 E-value=0.00027 Score=57.17 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+..+++|+||.||||||+.+.|+--+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.83 E-value=0.00026 Score=56.06 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+++.|.|++||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999997764
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.82 E-value=0.00018 Score=56.73 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.81 E-value=0.00032 Score=56.01 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
+++|+|..|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.77 E-value=0.00029 Score=54.60 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHh
Q psy6612 147 QRRISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEM 187 (291)
Q Consensus 147 kQrv~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l 187 (291)
.-.-.++..++.+..+-++ |+|+.+-.+..++++.|.+.
T Consensus 126 ~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~ 164 (169)
T d1upta_ 126 EMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET 164 (169)
T ss_dssp HHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence 3334455556666666666 88888888888887777554
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.75 E-value=0.00026 Score=57.44 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998743
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.00032 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++++|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.74 E-value=0.00035 Score=55.25 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.73 E-value=0.00032 Score=54.00 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|+|+.|||||||++.+++-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999887643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00034 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.++|+|+.|||||||++.|.|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.71 E-value=0.00028 Score=56.36 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+||+|..|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.69 E-value=0.00035 Score=58.83 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=26.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSF 80 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g 80 (291)
....+.|.||.|||||||.+.|++.+.. +-+.+++
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 3456889999999999999999997642 3445554
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.00043 Score=56.07 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+-.+++|+||.||||||+.+.|+.-+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998755
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.68 E-value=0.0051 Score=52.90 Aligned_cols=29 Identities=38% Similarity=0.641 Sum_probs=25.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++.|.++-+.||+|||||||.-.++...
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHH
Confidence 57899999999999999999997666643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.66 E-value=0.00038 Score=55.31 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|+|++||||||+-+.++-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998544
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.58 E-value=0.00037 Score=61.93 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=27.3
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEE
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKL 78 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~ 78 (291)
|.-+.|.||-|||||||+++|++.++|+.=-|.+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 3448999999999999999999999875433333
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.58 E-value=0.00051 Score=54.24 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.|+|+.||||||+-+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999998665
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.55 E-value=0.00042 Score=55.84 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997544
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.00061 Score=54.89 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.|+||.||||||..+.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.52 E-value=0.00073 Score=52.83 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|+.|||||||++.+.+-.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6799999999999999998864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0003 Score=55.63 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|+.++|||||+|.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00067 Score=55.62 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|.+++|-|+-||||||+++.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.49 E-value=0.00078 Score=54.18 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=21.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
++|=-+.|+||.||||||..+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566788999999999999999994
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.46 E-value=0.00063 Score=54.80 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
++||.|+.||||||+.+.+.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.45 E-value=0.00068 Score=53.75 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.44 E-value=0.00076 Score=54.43 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.++|..||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999654
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.0008 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
|++|.||.||||||+-+.|+.-+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999998654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.41 E-value=0.0008 Score=55.68 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=24.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++|.+++|-|+-||||||+.+.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999877553
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.40 E-value=0.00057 Score=55.11 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=22.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.-+++|-|+.||||||+++.|+..+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998755
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.39 E-value=0.00089 Score=55.73 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.+++++||+|+||||.+-=|+..+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999874455444
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.00057 Score=56.62 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999998763
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.36 E-value=0.087 Score=44.58 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHc
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~g 67 (291)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999988754
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.36 E-value=0.00073 Score=57.76 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-++|+|..|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.35 E-value=0.00079 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|..|||||||++.+.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999885
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.34 E-value=0.00098 Score=55.21 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=31.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCC--CccEEEECCEecC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTL--DAGTIKLSFRQIS 84 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p--~~G~I~~~g~~~~ 84 (291)
++|-++.|.|.+||||||+.+.|.-.+.. ..-.+.++|..++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 57889999999999999999998754321 1234678887664
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.33 E-value=0.00028 Score=54.95 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|+.|+|||||++.|+|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.001 Score=55.58 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
..+.|.||+|+||||+.++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999998653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.31 E-value=0.001 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.29 E-value=0.00095 Score=55.29 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH-hh-hCeEEEE
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-KG-AHNIGLM 213 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~-~~-~d~i~~l 213 (291)
++.++++||- ..+-...+..++..+..-. ....+|++|+..+.+ .. .+|...+
T Consensus 109 ~~~iilide~-d~~~~~~~~~ll~~l~~~~-~~~~~i~~~n~~~~i~~~l~sR~~~i 163 (231)
T d1iqpa2 109 SFKIIFLDEA-DALTQDAQQALRRTMEMFS-SNVRFILSCNYSSKIIEPIQSRCAIF 163 (231)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred CceEEeehhh-hhcchhHHHHHhhhcccCC-cceEEEeccCChhhchHhHhCccccc
Confidence 5679999994 4555566666666665543 245677888877665 32 4555444
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.27 E-value=0.001 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|-||.||||||..+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56888999999999999999754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.00092 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.0011 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
+++|+++.|.||.|||||||.-.++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 88999999999999999999976653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.22 E-value=0.0012 Score=54.76 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
+|.+++|-|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999877654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.20 E-value=0.001 Score=52.07 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=18.3
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 678999999999999977653
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.17 E-value=0.0012 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.315 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
.+.|+||.||||||..+.|+--
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999854
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.16 E-value=0.0012 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.3
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.|+||.||||||+.+.|+--+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998544
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0012 Score=54.47 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.14 E-value=0.0013 Score=53.92 Aligned_cols=21 Identities=48% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
++||.|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999998863
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.00077 Score=59.49 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=32.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGE 98 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ 98 (291)
++||.|++||||||+.+.|..++.-..+ + .++..+++|..++++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----~---~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----H---RRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----C---CCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----C---CceEEEeeeeeECCc
Confidence 8999999999999999999887642111 1 346677777666553
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.11 E-value=0.0014 Score=54.58 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=21.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
.+.++.|.||.|+|||||++.++.-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 5678999999999999999987643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0011 Score=55.32 Aligned_cols=102 Identities=16% Similarity=0.083 Sum_probs=55.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHH
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETR 122 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~ 122 (291)
++-.+++++||+|+||||.+-=|+-.+. ..| ++++++.-|.. . -...+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~---------~kV~lit~Dt~-----R----------------~gA~eQ 57 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG---------KSVVLAAADTF-----R----------------AAAIEQ 57 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT---------CCEEEEEECTT-----C----------------HHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC---------CceEEEeeccc-----c----------------cchhHH
Confidence 3555899999999999998744443332 122 34666554421 1 111233
Q ss_pred HHHHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCCCHHHHHH
Q psy6612 123 SKEILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGLDPILSQI 179 (291)
Q Consensus 123 ~~~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgLD~~~~~~ 179 (291)
...+.+.++++- ......+++ .-.+-..+.+...+-+++|.| |+|..+.....
T Consensus 58 L~~~a~~l~i~~~~~~~~~d~~--~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~~ 111 (213)
T d1vmaa2 58 LKIWGERVGATVISHSEGADPA--AVAFDAVAHALARNKDVVIID--TAGRLHTKKNL 111 (213)
T ss_dssp HHHHHHHHTCEEECCSTTCCHH--HHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHHH
T ss_pred HHHHhhhcCccccccCCCCcHH--HHHHHHHHHHHHcCCCEEEEe--ccccccchHHH
Confidence 445556666642 111222222 223344455667789999999 56655544443
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.10 E-value=0.0013 Score=52.62 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
+||+|.-.||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.06 E-value=0.0016 Score=54.13 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...++.++||||+||||.+-=|+..+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999886566544
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.05 E-value=0.0018 Score=52.72 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCI 65 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i 65 (291)
+++|+++.|.|++|+|||||.--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 889999999999999999997543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.0013 Score=54.63 Aligned_cols=26 Identities=38% Similarity=0.454 Sum_probs=22.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
.+.+.||.|+||||+.++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 37899999999999999999866543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.99 E-value=0.0015 Score=51.43 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999987753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.96 E-value=0.0019 Score=51.47 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
+.|+||.||||||+.+.|+--
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=57.80 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.-++||.||.|||||||++.+...+
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999988554
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.0015 Score=54.44 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=56.1
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEcCCCCCCCCCCHHHHHHHhccccCCChHHHHHHHH
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMPQELALHGELSIRETFRYYGYMFDMTDDQIETRSK 124 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~ 124 (291)
-.+++++||+|+||||.+-=|+-.+. ..| ++++++.-|.. .+ ...+...
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~g---------~kV~lit~Dt~-----R~----------------gA~eQL~ 57 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQG---------KSVMLAAGDTF-----RA----------------AAVEQLQ 57 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TTT---------CCEEEECCCTT-----CH----------------HHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HCC---------CcEEEEecccc-----cc----------------cchhhhh
Confidence 35899999999999998844554443 233 34666554321 11 1123444
Q ss_pred HHHHHcCCCC-CCCCcCcCChhHHHHHHHHHHHhcCCCEEEEcccCCCC---CHHHHHHHHHHHH
Q psy6612 125 EILKLLELPP-AKKIVGALSGGQQRRISFAVSLLHNPKLLILDEPTVGL---DPILSQIIWDRLK 185 (291)
Q Consensus 125 ~~l~~~~l~~-~~~~~~~LSgGqkQrv~iAral~~~p~llllDEPtsgL---D~~~~~~i~~~l~ 185 (291)
.+.+.++++- ......++..=.++- +..|-..+-+++|.| |+|. |....+++.++.+
T Consensus 58 ~~a~~l~v~~~~~~~~~d~~~~l~~~--~~~a~~~~~d~ilID--TaGr~~~d~~~~~el~~l~~ 118 (211)
T d2qy9a2 58 VWGQRNNIPVIAQHTGADSASVIFDA--IQAAKARNIDVLIAD--TAGRLQNKSHLMEELKKIVR 118 (211)
T ss_dssp HHHHHTTCCEECCSTTCCHHHHHHHH--HHHHHHTTCSEEEEC--CCCCGGGHHHHHHHHHHHHH
T ss_pred hhhhhcCCcccccccCCCHHHHHHHH--HHHHHHcCCCEEEec--cCCCccccHHHHHHHHHHHH
Confidence 5566677753 222223322211111 112335688999999 5665 4444444444433
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.94 E-value=0.0018 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.92 E-value=0.0017 Score=51.14 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=18.5
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999977643
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0021 Score=53.09 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
-|++|.++.|.||+|||||||.-.++
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 38899999999999999999987665
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0035 Score=49.10 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=17.9
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999987765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.90 E-value=0.0015 Score=51.36 Aligned_cols=21 Identities=43% Similarity=0.532 Sum_probs=19.1
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.90 E-value=0.0022 Score=53.01 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.6
Q ss_pred EeCCcEEEEECCCCccHHHHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCI 65 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i 65 (291)
+++|+++.|.||.|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 789999999999999999998533
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.002 Score=52.95 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
++||.|+.||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.89 E-value=0.0023 Score=52.24 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
+++|+++.|.|+.|+|||||.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999985554
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0021 Score=50.27 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887754
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.87 E-value=0.0024 Score=50.75 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=26.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
..++|.+++|-|+=|||||||.|.++.-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3478999999999999999999998876643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.86 E-value=0.0019 Score=51.17 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.3
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999876553
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.82 E-value=0.0019 Score=53.64 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+.+.||.|+||||+.+++++.+
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.81 E-value=0.0018 Score=56.65 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.-+.++||.|||||+|.|+|+..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 34456789999999999999999864
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.80 E-value=0.0024 Score=58.02 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++|+|..|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.72 E-value=0.0013 Score=57.47 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++||.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999887654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.003 Score=53.91 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...-+.|.||.|||||++.+.|+..+
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHc
Confidence 34557899999999999999999765
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0029 Score=50.39 Aligned_cols=21 Identities=43% Similarity=0.477 Sum_probs=18.9
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999888764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.0033 Score=49.00 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=17.5
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986664
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.66 E-value=0.0029 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998755
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.62 E-value=0.0031 Score=49.21 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=18.4
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|.+|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999877654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0027 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|+.|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999876654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.60 E-value=0.0029 Score=52.46 Aligned_cols=27 Identities=30% Similarity=0.234 Sum_probs=23.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
..+.|.||.|+||||+++.++..++..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 478899999999999999999877543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.0026 Score=50.05 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.7
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++|+|..|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.56 E-value=0.003 Score=51.97 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=30.4
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+++++||.- ++....+..+...+.... ....+++++++.+-+
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSNKI 144 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred eEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchhhh
Confidence 5799999964 566677777776666653 346678888887665
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0025 Score=52.94 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=32.9
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
...++++||.-. |.......+.+.+.+.. ....+|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccch
Confidence 456999999854 88888888887777653 245688899987654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.54 E-value=0.0028 Score=58.47 Aligned_cols=44 Identities=25% Similarity=0.493 Sum_probs=31.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC-CCccEEEECCEecCeEEEEcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT-LDAGTIKLSFRQISDIGYMPQEL 93 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~-p~~G~I~~~g~~~~~ig~v~q~~ 93 (291)
=+.++||.|||||-|.|.|++++. | -+..+...+...||+-.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecch
Confidence 478999999999999999999763 3 4566666667788877764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0036 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.4
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|..|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.50 E-value=0.0019 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|+.|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999987643
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.50 E-value=0.0032 Score=52.36 Aligned_cols=22 Identities=50% Similarity=0.675 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
++||+|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0039 Score=49.08 Aligned_cols=20 Identities=45% Similarity=0.635 Sum_probs=17.2
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999966554
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.48 E-value=0.0032 Score=50.12 Aligned_cols=20 Identities=50% Similarity=0.684 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987664
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.48 E-value=0.003 Score=53.53 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-+.|.||.|||||++.++|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4679999999999999999974
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.0039 Score=48.65 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.4
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988654
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.004 Score=48.90 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|+.|+|||||++.+.+-
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987763
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0051 Score=48.45 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|..|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6799999999999999998764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.38 E-value=0.0047 Score=48.16 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.4
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|..|+|||||++.+.+-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0043 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.6
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|..|+|||||++.+.+-
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987753
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.34 E-value=0.0038 Score=48.79 Aligned_cols=20 Identities=35% Similarity=0.586 Sum_probs=17.9
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.33 E-value=0.0085 Score=47.57 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=18.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999866653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.004 Score=51.07 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=32.3
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+++++||. ..+....+..++..|.+.. ....++++|++...+
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKL 142 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGS
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcc-cceeeccccCcHHHh
Confidence 469999996 5788888888888888764 345677788776665
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.31 E-value=0.0043 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHcC
Q psy6612 44 ENKIYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~~i~gl 68 (291)
+.-++||.||-|||||||+..+...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 3457999999999999999888754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.31 E-value=0.0051 Score=48.00 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|..|+|||||++.+.+-
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999777653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.30 E-value=0.0039 Score=51.56 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=22.4
Q ss_pred EEEEECCCCccHHHHHHHH-HcCCCCCcc
Q psy6612 47 IYGLLGPSGCGKTTLLNCI-VGRNTLDAG 74 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i-~gl~~p~~G 74 (291)
-+.|+|.+|+|||||++-+ .+-..||-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 4689999999999999765 455568877
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.30 E-value=0.004 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=17.7
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0036 Score=49.44 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=18.0
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++|+|.+|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999776654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.24 E-value=0.0043 Score=48.46 Aligned_cols=20 Identities=35% Similarity=0.351 Sum_probs=17.7
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++|+|..|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999987664
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0048 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++||-|+.|||||||.+.|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 88999999999999998775443
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=95.23 E-value=0.0027 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+.++|++|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36799999999999999987644
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.12 E-value=0.0046 Score=52.39 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+.+.||.|||||+|.+.|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999754
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.12 E-value=0.0036 Score=52.23 Aligned_cols=23 Identities=52% Similarity=0.741 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0062 Score=48.04 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.7
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|..|+|||||++.+.+-
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.07 E-value=0.013 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.259 Sum_probs=24.9
Q ss_pred eEeeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 34 VLKGLNLNVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 34 ~L~~vsl~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
.++...+.+ .|.-+.|.||+|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 345555555 78889999999999999986654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.006 Score=49.01 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=18.0
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999987764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0056 Score=47.96 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999987775
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.005 Score=48.49 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=17.7
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++|+|..|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.95 E-value=0.0064 Score=47.92 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.3
Q ss_pred EEEECCCCccHHHHHHHHHcCCCCCccEE
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRNTLDAGTI 76 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~~p~~G~I 76 (291)
+.++|..|+|||||++-+..-..|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 68999999999999988876667777744
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.0051 Score=48.28 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.1
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0055 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+.|.||.|||||+|.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.94 E-value=0.0032 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=23.5
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNTL 71 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~p 71 (291)
.-+.|.||.|+|||||.|.++++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999999876
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.0075 Score=47.14 Aligned_cols=21 Identities=38% Similarity=0.464 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|..|+|||||++.+.+-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999877743
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.88 E-value=0.008 Score=46.92 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.3
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0037 Score=49.21 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=17.1
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++.+++
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0063 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999977664
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.80 E-value=0.006 Score=55.28 Aligned_cols=48 Identities=21% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 150 ISFAVSLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 150 v~iAral~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
-++..+|=++|+++++.|.. |+.+....+ +.+..|..|+-+-|--+-+
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSSH
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCchH
Confidence 45677888999999999986 455554433 4456788999998864443
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.79 E-value=0.0068 Score=47.54 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.6
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57899999999999987665
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.0068 Score=47.42 Aligned_cols=20 Identities=45% Similarity=0.512 Sum_probs=17.6
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999986544
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.67 E-value=0.0087 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.9
Q ss_pred cEEEEECCCCccHHHHHHHHHc
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~g 67 (291)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.65 E-value=0.0048 Score=48.54 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=8.5
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++.+++
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987665
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.64 E-value=0.0065 Score=52.82 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=27.9
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.=+.+-+|+-.+|+|+.|+|||||+..|+.-.
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 33688999999999999999999998888644
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.0084 Score=47.63 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=21.7
Q ss_pred EEEECCCCccHHHHHHHHHcC--CCCCcc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR--NTLDAG 74 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl--~~p~~G 74 (291)
+.|+|..|+|||||++-+.-. ..||-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 679999999999999877322 357888
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.55 E-value=0.0083 Score=46.98 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=18.0
Q ss_pred EEEEECCCCccHHHHHHHHHc
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~g 67 (291)
-++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999987654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.0087 Score=46.61 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=17.8
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
++++|..|+|||||++-+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999876543
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.013 Score=50.15 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=23.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
-++.|.++-|.||+|||||||+-.++.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHH
Confidence 578999999999999999999844443
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0082 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.9
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 389999999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0093 Score=47.45 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.5
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++|+|..|+|||||++.+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 78999999999999977553
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.38 E-value=0.0094 Score=47.26 Aligned_cols=20 Identities=40% Similarity=0.672 Sum_probs=16.8
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|..|+|||||++-+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999965543
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.011 Score=48.65 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
++++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997653
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.0096 Score=47.56 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.1
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
++++|+.|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999966543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.17 E-value=0.025 Score=45.38 Aligned_cols=25 Identities=24% Similarity=0.072 Sum_probs=20.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
.-.|.=+.|.|++|+|||||.-.+.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 4457789999999999999886544
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.01 E-value=0.012 Score=50.97 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=35.5
Q ss_pred cCcCChhHHHHHHHHHHHhcCCCEEEE--cccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 139 VGALSGGQQRRISFAVSLLHNPKLLIL--DEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 139 ~~~LSgGqkQrv~iAral~~~p~llll--DEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
..+++.-+.+++.-..-+...|-++++ +|.. ....+-++.+...+++..++-++...+..
T Consensus 195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~------~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 195 PTKWSQDDLLAFASEIRRVNKPMVIAANKADAA------SDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS------CHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred hhhcCHHHHHHhHHHhhhhcCchhhhcccccch------hhHHHHHHHHHHhhcCCEEEEecHHHHHH
Confidence 345677777777776666777777664 3322 22333344444445677777777766554
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.95 E-value=0.017 Score=46.31 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=20.2
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+|++|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 6999999999999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.93 E-value=0.012 Score=50.30 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=20.7
Q ss_pred EEEECCCCccHHHHHHHHHcCC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++++|.-.||||||+++|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7899999999999999999975
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.016 Score=50.59 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.7
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
..+.++||+|+|||.|.+.|+..+
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhhc
Confidence 368899999999999999999875
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.81 E-value=0.017 Score=49.55 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=22.4
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC-CC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT-LD 72 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~-p~ 72 (291)
-++++|.-.||||||+++|+|.-- |+
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 378999999999999999999763 53
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.77 E-value=0.016 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
-+||+|...||||||++++++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999975
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=93.62 E-value=0.016 Score=51.85 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=26.8
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
.++++.++.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999998764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.50 E-value=0.031 Score=44.49 Aligned_cols=28 Identities=21% Similarity=0.057 Sum_probs=21.7
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHH
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~ 66 (291)
++-.-.|.=+.|.|++|+|||||.-.+.
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3344567889999999999999885544
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.36 E-value=0.022 Score=48.75 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=23.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 41 NVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 41 ~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
-++.|.++-+.||+|||||||+-.++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHH
Confidence 588999999999999999999744443
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.27 E-value=0.02 Score=45.07 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=20.8
Q ss_pred EEEECCCCccHHHHHHHHHcCC---CCCcc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGRN---TLDAG 74 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl~---~p~~G 74 (291)
+.++|..|+|||||++-+..-. .||-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 6899999999999998775432 35555
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.23 E-value=0.019 Score=51.19 Aligned_cols=45 Identities=20% Similarity=0.375 Sum_probs=27.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCCCCCccEEEECCEecCeEEEEc
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRNTLDAGTIKLSFRQISDIGYMP 90 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~~p~~G~I~~~g~~~~~ig~v~ 90 (291)
+++. +.++||.|+|||-|.|.|+.+.. ..-+.++-..+...||+-
T Consensus 67 p~~n-iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D~s~~~e~gyvg 111 (364)
T d1um8a_ 67 SKSN-ILLIGPTGSGKTLMAQTLAKHLD--IPIAISDATSLTEAGYVG 111 (364)
T ss_dssp CCCC-EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEGGGCC------
T ss_pred CCcc-eeeeCCCCccHHHHHHHHHhhcc--cceeehhhhhcccchhhH
Confidence 4553 56779999999999999998752 234555444444555554
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.018 Score=47.60 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHHcC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl 68 (291)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999887763
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.08 E-value=0.037 Score=47.07 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-+||+|-.-+|||||+++|++--
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.87 E-value=0.026 Score=46.72 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=32.9
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+++|+||.= .|...++..++..|.+.. .+..+|++|++.+-+
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCC-CCeEEEEEcCCcccc
Confidence 4599999985 488888888777776543 356789999988776
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.66 E-value=0.026 Score=48.24 Aligned_cols=20 Identities=40% Similarity=0.690 Sum_probs=18.0
Q ss_pred EEEEECCCCccHHHHHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~ 66 (291)
-++|+|..|||||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999883
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.62 E-value=0.03 Score=45.93 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=35.1
Q ss_pred hcCCCEEEEcccCCC-CCHHHHHHHHHHHHHhHhCCcEEEEEccC
Q psy6612 157 LHNPKLLILDEPTVG-LDPILSQIIWDRLKEMALNGKTIIITTHY 200 (291)
Q Consensus 157 ~~~p~llllDEPtsg-LD~~~~~~i~~~l~~l~~~g~tii~~tHd 200 (291)
..+.++|++|+-=.= -++..+..+..++..+.+.|+.+|++|..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 458899999987432 35778888999999988888888888774
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.032 Score=45.37 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=31.1
Q ss_pred CCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 160 PKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 160 p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
.+++|+||. -.|...++..+++.|.+.. .+..+|++|++.+-+
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPERL 151 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGS
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChhhh
Confidence 679999975 4566777777777776653 345678899998765
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.44 E-value=0.046 Score=47.92 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=24.4
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 39 NLNVPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 39 sl~i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-...++| ++.+.||.|||||.|.+.|++.+
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3556666 66778999999999999999864
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.41 E-value=0.032 Score=47.92 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=25.8
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.=+.+-+|+..+|+|+.|+|||||+..|+.
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 446899999999999999999999766654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.38 E-value=0.041 Score=44.39 Aligned_cols=24 Identities=42% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
-+|++|.=.||||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.04 Score=44.77 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.2
Q ss_pred EEEECCCCccHHHHHHHHHc
Q psy6612 48 YGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~g 67 (291)
+|++|.-+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 79999999999999999853
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.038 Score=47.38 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHH---HcCCCCCccEE
Q psy6612 47 IYGLLGPSGCGKTTLLNCI---VGRNTLDAGTI 76 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i---~gl~~p~~G~I 76 (291)
-+||+|..|||||||...| +|.+.. .|++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v 39 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV 39 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence 3799999999999999887 555433 4444
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.74 E-value=0.038 Score=49.33 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=29.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH
Q psy6612 162 LLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA 204 (291)
Q Consensus 162 llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~ 204 (291)
++++||--+-... ..+.+++.+.++.|..+++++.+++.+
T Consensus 279 ~l~lDE~~~~~~~---~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql 318 (433)
T d1e9ra_ 279 WLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQL 318 (433)
T ss_dssp EEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHH
T ss_pred EEEechHhhhccc---HHHHHHHHHhCCCCceEEEEeccHHHH
Confidence 6788996543331 135667777777899999999998876
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.92 E-value=0.06 Score=46.79 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.4
Q ss_pred cEEEEECCCCccHHHHHHHHHcCC
Q psy6612 46 KIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 46 ei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchHHHHHHHHHHHh
Confidence 367899999999999999999876
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=90.84 E-value=0.089 Score=46.21 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=22.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLD 72 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~ 72 (291)
.+.|=|+=||||||+++.|+.-+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC
Confidence 46777999999999999999877653
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=90.62 E-value=0.077 Score=46.31 Aligned_cols=24 Identities=46% Similarity=0.566 Sum_probs=19.3
Q ss_pred eEEEe-CCcEEEEECCCCccHHHHH
Q psy6612 39 NLNVP-ENKIYGLLGPSGCGKTTLL 62 (291)
Q Consensus 39 sl~i~-~Gei~~liGpNGaGKSTLl 62 (291)
|-++. .|++..+.|.+|+|||||-
T Consensus 7 san~~~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 7 SANVGKEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred ccccCCCCCEEEEEccCCCCccccc
Confidence 33444 4889999999999999974
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=90.32 E-value=0.059 Score=46.94 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=19.6
Q ss_pred eEEE-eCCcEEEEECCCCccHHHHH
Q psy6612 39 NLNV-PENKIYGLLGPSGCGKTTLL 62 (291)
Q Consensus 39 sl~i-~~Gei~~liGpNGaGKSTLl 62 (291)
|-++ +.|++..+.|.+|+|||||-
T Consensus 7 san~~~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 7 SANVGEKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred ccccCCCCCEEEEEccCCCCcccce
Confidence 3444 46899999999999999975
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.02 E-value=0.08 Score=45.11 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-..|+||.|+|||+++.-++..+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999998888654
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.088 Score=42.72 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
-..|+||.|.|||+++.-++..+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999998888644
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.80 E-value=0.064 Score=45.94 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=25.2
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHc
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCIVG 67 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i~g 67 (291)
.=+.+-+|+..+|+|+.|+|||+|+..++-
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~ 89 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTIL 89 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHh
Confidence 346888999999999999999999875443
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=89.70 E-value=0.074 Score=45.17 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
++--++.+.||-++|||||+++|+.++
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 455689999999999999999999987
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.58 E-value=0.071 Score=46.81 Aligned_cols=31 Identities=26% Similarity=0.200 Sum_probs=24.3
Q ss_pred EEEEECCCCccHHHHHHHHHcCCCCCccEEE
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRNTLDAGTIK 77 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~~p~~G~I~ 77 (291)
.++|=|+=||||||+++.|+..+......+.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~ 37 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRIL 37 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceE
Confidence 4778899999999999999987765433333
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.34 E-value=0.09 Score=42.41 Aligned_cols=21 Identities=38% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEECCCCccHHHHHHHHHcC
Q psy6612 48 YGLLGPSGCGKTTLLNCIVGR 68 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~gl 68 (291)
+|++|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999998764
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=88.73 E-value=0.095 Score=45.77 Aligned_cols=19 Identities=42% Similarity=0.594 Sum_probs=17.7
Q ss_pred CCcEEEEECCCCccHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLL 62 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl 62 (291)
.|++..+.|-||+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 6889999999999999996
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.21 E-value=0.11 Score=45.44 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=19.0
Q ss_pred EEEEECCCCccHHHHHHHHHcCC
Q psy6612 47 IYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 47 i~~liGpNGaGKSTLl~~i~gl~ 69 (291)
.++|=|+=||||||+++.|...+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 36788999999999999998755
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=88.15 E-value=0.11 Score=43.56 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.6
Q ss_pred EEEEECCCCccHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLL 62 (291)
Q Consensus 47 i~~liGpNGaGKSTLl 62 (291)
-+.|+|+-||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.06 E-value=0.092 Score=44.50 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=13.6
Q ss_pred EEEEECCCCccHHHHH
Q psy6612 47 IYGLLGPSGCGKTTLL 62 (291)
Q Consensus 47 i~~liGpNGaGKSTLl 62 (291)
.+.|.|+-||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4678899999999865
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=87.80 E-value=0.05 Score=39.89 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=17.9
Q ss_pred EeCCcEEEEECCCCccHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTTLL 62 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl 62 (291)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999543
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=87.67 E-value=0.17 Score=38.48 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=20.5
Q ss_pred CcEEEEECCCCccHHH-HHHHHHcC
Q psy6612 45 NKIYGLLGPSGCGKTT-LLNCIVGR 68 (291)
Q Consensus 45 Gei~~liGpNGaGKST-Ll~~i~gl 68 (291)
|.+..++||=.||||| |++.+-..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 7788999999999999 77877554
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.52 E-value=0.082 Score=45.46 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=24.2
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHH
Q psy6612 38 LNLNVPENKIYGLLGPSGCGKTTLLNCI 65 (291)
Q Consensus 38 vsl~i~~Gei~~liGpNGaGKSTLl~~i 65 (291)
.=+.+-+|+..+|+|+.|+|||||+.-+
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~ 88 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDT 88 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHH
Confidence 4468999999999999999999997544
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=87.48 E-value=0.23 Score=43.78 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.4
Q ss_pred CCcEEEEECCCCccHHHHHH
Q psy6612 44 ENKIYGLLGPSGCGKTTLLN 63 (291)
Q Consensus 44 ~Gei~~liGpNGaGKSTLl~ 63 (291)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36699999999999999874
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.20 E-value=0.15 Score=41.71 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=17.3
Q ss_pred EEEECCCCccHHHHHHHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~ 66 (291)
+|++|--++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 7899999999999998774
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.29 E-value=0.21 Score=40.16 Aligned_cols=53 Identities=11% Similarity=0.101 Sum_probs=38.7
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHhHH-hh-hCeEEEE
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIEEA-KG-AHNIGLM 213 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~~~-~~-~d~i~~l 213 (291)
+.+|+|+|| .-.|...++..++..|.+-- .+..+|++|++.+-+ .. -.|+..+
T Consensus 79 ~~KviIId~-ad~l~~~aqNaLLK~LEEPp-~~t~fiLit~~~~~ll~TI~SRC~~i 133 (198)
T d2gnoa2 79 TRKYVIVHD-CERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYLLPTIKSRVFRV 133 (198)
T ss_dssp SSEEEEETT-GGGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CCEEEEEeC-ccccchhhhhHHHHHHhCCC-CCceeeeccCChhhCHHHHhcceEEE
Confidence 358999999 56788889988888888764 356788899998766 22 3454444
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=85.50 E-value=0.12 Score=43.33 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=19.9
Q ss_pred EeCCcEEEEECCCCccHHH--HHHHHH
Q psy6612 42 VPENKIYGLLGPSGCGKTT--LLNCIV 66 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKST--Ll~~i~ 66 (291)
+.+|+.+.|.+|.|||||+ |..++.
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~ 32 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVR 32 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 4689999999999999996 335443
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=85.21 E-value=0.24 Score=40.58 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=17.6
Q ss_pred EEEECCCCccHHHHHHHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~ 66 (291)
++++|--.+|||||+..|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.43 E-value=0.35 Score=40.54 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.7
Q ss_pred CcEEEEECCCCccHHHHHHHHHcCCC
Q psy6612 45 NKIYGLLGPSGCGKTTLLNCIVGRNT 70 (291)
Q Consensus 45 Gei~~liGpNGaGKSTLl~~i~gl~~ 70 (291)
+=.++++|-.-+|||||+|.|.|-..
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEEecCccchhhhhhhhhccce
Confidence 33489999999999999999999754
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=84.09 E-value=0.22 Score=36.74 Aligned_cols=36 Identities=19% Similarity=0.042 Sum_probs=25.1
Q ss_pred HHhcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCC
Q psy6612 155 SLLHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNG 191 (291)
Q Consensus 155 al~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g 191 (291)
....+-+++|+||-= .+|..+...+...++.+...+
T Consensus 90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~~~ 125 (136)
T d1a1va1 90 CSGGAYDIIICDECH-STDATSILGIGTVLDQAETAG 125 (136)
T ss_dssp GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHHHCC
Confidence 345678999999984 468777767766666654333
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.50 E-value=0.25 Score=43.29 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=19.8
Q ss_pred EEEECCCCccHHHHHHHH---HcCCC
Q psy6612 48 YGLLGPSGCGKTTLLNCI---VGRNT 70 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i---~gl~~ 70 (291)
+||+|.-|+|||||+..| +|.+.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 899999999999999888 46553
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=83.37 E-value=0.3 Score=40.58 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.1
Q ss_pred CCCEEEEcccCCCCCHHHHHHHHHHHHH
Q psy6612 159 NPKLLILDEPTVGLDPILSQIIWDRLKE 186 (291)
Q Consensus 159 ~p~llllDEPtsgLD~~~~~~i~~~l~~ 186 (291)
+--.|++||. ..|++..+..+.+.|.+
T Consensus 94 ~gGtL~l~~i-~~L~~~~Q~~L~~~l~~ 120 (247)
T d1ny5a2 94 DGGTLFLDEI-GELSLEAQAKLLRVIES 120 (247)
T ss_dssp TTSEEEEESG-GGCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCh-HhCCHHHHHHHHHHHHh
Confidence 4567999998 77899999999999976
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.13 E-value=0.35 Score=36.36 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=27.5
Q ss_pred hcCCCEEEEcccCCCCCHHHHHHHHHHHHHhHhCCcEEEEEccCHh
Q psy6612 157 LHNPKLLILDEPTVGLDPILSQIIWDRLKEMALNGKTIIITTHYIE 202 (291)
Q Consensus 157 ~~~p~llllDEPtsgLD~~~~~~i~~~l~~l~~~g~tii~~tHd~~ 202 (291)
..++++++.||--== | .+.+.+..+.+.|++|++..=|.+
T Consensus 71 ~~~~d~I~IDEaQFf-~-----dl~~~~~~~~~~~~~Viv~GLd~D 110 (133)
T d1xbta1 71 ALGVAVIGIDEGQFF-P-----DIVEFCEAMANAGKTVIVAALDGT 110 (133)
T ss_dssp HHTCSEEEESSGGGC-T-----THHHHHHHHHHTTCEEEEECCSBC
T ss_pred hcccceEEeehhHHH-H-----HHHHHHHHHHhcCCcEEEEEeccc
Confidence 348999999997333 2 355556666667899998875544
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=82.76 E-value=0.2 Score=40.84 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=24.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 42 VPENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 42 i~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
+++-.++.+.||.++|||++...|+.++
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHh
Confidence 4666799999999999999999999886
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=82.63 E-value=0.28 Score=43.73 Aligned_cols=19 Identities=32% Similarity=0.576 Sum_probs=16.0
Q ss_pred EEEECCCCccHHHHHHHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~ 66 (291)
..|+||.|.|||+++.-++
T Consensus 46 ~llvG~~GvGKtaiv~~la 64 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLA 64 (387)
T ss_dssp CEEEECTTSCHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHH
Confidence 4789999999999986555
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=82.52 E-value=0.37 Score=46.08 Aligned_cols=27 Identities=33% Similarity=0.290 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+.+.|.|++|||||+-.|.|+..+
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~yL 110 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQFL 110 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988886544
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=82.13 E-value=0.37 Score=46.34 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+.+.|.|++|||||+-.|.|+..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999887655
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.17 E-value=0.42 Score=45.89 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=23.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHcCC
Q psy6612 43 PENKIYGLLGPSGCGKTTLLNCIVGRN 69 (291)
Q Consensus 43 ~~Gei~~liGpNGaGKSTLl~~i~gl~ 69 (291)
...+.+.|.|++|||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 357899999999999999988886654
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.98 E-value=0.4 Score=39.63 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=17.1
Q ss_pred EEEECCCCccHHHHHHHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCIV 66 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i~ 66 (291)
++++|--++|||||+..|+
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHH
Confidence 6899999999999997774
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.76 E-value=0.34 Score=40.14 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=17.0
Q ss_pred EEEECCCCccHHHHHHHH
Q psy6612 48 YGLLGPSGCGKTTLLNCI 65 (291)
Q Consensus 48 ~~liGpNGaGKSTLl~~i 65 (291)
++++|--++|||||+..|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEeeCCCCHHHHHHHH
Confidence 799999999999999888
|