Psyllid ID: psy6641

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MVNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLGWET
Secondary Structure (PSIPRED)
cccEEEcccccccccccccccccccccccEEEEcccccccccEEEEEcccccEEEccccEEEccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEEcccccccccEEEEEEccccEEcccccEEEcccccEcccccccEcHccccccccc
Coil and Loop (DISEMBL)
mvnmkchnlvlpevseyeecrfpgapahssivfsnetlspgtvATYACERGfellgpsrrvcdktgqwmpegipfcvrwctglgwet
Flexible Loop (DISEMBL)
MVNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKtgqwmpegipfCVRWCTGLGWET
Low Complexity Region (SEG)
MVNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLGWET
Disordered region (IsUnstruct)
*****CHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLGW**
Disordered Region (DISOPRED)
*****CHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLG***
Disordered Region (DISEMBL)
MVNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLGWET
Disordered Region (DISPRO)
****KCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLGW**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCTGLGWET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
270004842	860	hypothetical protein TcasGA2_TC002984 [T	0.839	0.084	0.689	2e-21
189235259	750	PREDICTED: similar to CG9095 CG9095-PB [	0.850	0.098	0.68	2e-21
328710409	818	PREDICTED: hypothetical protein LOC10016	0.701	0.074	0.687	9e-21
195169277	535	GL15201 [Drosophila persimilis] gi|19410	0.655	0.106	0.793	1e-20
198470412	1122	GA22904 [Drosophila pseudoobscura pseudo	0.666	0.051	0.779	2e-20
194894782	1145	GG19416 [Drosophila erecta] gi|190649766	0.655	0.049	0.793	4e-20
195132568	1122	GI21553 [Drosophila mojavensis] gi|19390	0.678	0.052	0.766	4e-20
161077826	1141	CG9095, isoform B [Drosophila melanogast	0.655	0.049	0.793	4e-20
195478738	1150	GE16067 [Drosophila yakuba] gi|194188158	0.655	0.049	0.793	4e-20
442616393	968	CG9095, isoform C [Drosophila melanogast	0.655	0.058	0.793	4e-20

>gi|270004842|gb|EFA01290.1| hypothetical protein TcasGA2_TC002984 [Tribolium castaneum]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 4  MKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD 63
          +K   L      E   CRFPGAPAHSS+VFS+E L PG VATY+CERGFELLGPSRRVC+
Sbjct: 20 LKSKTLAGISAEEKLGCRFPGAPAHSSVVFSDENLGPGAVATYSCERGFELLGPSRRVCE 79

Query: 64 KTGQWMPEGIPFCV 77
            GQW+PEGIPFCV
Sbjct: 80 H-GQWLPEGIPFCV 92

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235259|ref|XP_972112.2| PREDICTED: similar to CG9095 CG9095-PB [Tribolium castaneum]

 Score =  106 bits (264), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/75 (68%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 3  NMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC 62
           +K   L      E   CRFPGAPAHSS+VFS+E L PG VATY+CERGFELLGPSRRVC
Sbjct: 19 KLKSKTLAGISAEEKLGCRFPGAPAHSSVVFSDENLGPGAVATYSCERGFELLGPSRRVC 78

Query: 63 DKTGQWMPEGIPFCV 77
          +  GQW+PEGIPFCV
Sbjct: 79 EH-GQWLPEGIPFCV 92

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710409|ref|XP_001948504.2| PREDICTED: hypothetical protein LOC100160092 [Acyrthosiphon pisum]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 14 VSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGI 73
           S    C+FPGAPAHS++ FSN+TL+ G +ATY CERGFELLGP+RRVC+ TG+W+PEGI
Sbjct: 21 TSTETRCKFPGAPAHSTVSFSNDTLTTGAIATYTCERGFELLGPARRVCESTGEWLPEGI 80

Query: 74 PFCV 77
          PFCV
Sbjct: 81 PFCV 84

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195169277|ref|XP_002025448.1| GL15201 [Drosophila persimilis] gi|194108927|gb|EDW30970.1| GL15201 [Drosophila persimilis]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 53/58 (91%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 23 CSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 79

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198470412|ref|XP_002133456.1| GA22904 [Drosophila pseudoobscura pseudoobscura] gi|198145438|gb|EDY72084.1| GA22904 [Drosophila pseudoobscura pseudoobscura]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 54/59 (91%), Gaps = 1/59 (1%)

Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          +C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 33 DCSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 90

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894782|ref|XP_001978117.1| GG19416 [Drosophila erecta] gi|190649766|gb|EDV47044.1| GG19416 [Drosophila erecta]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 53/58 (91%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 35 CSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 91

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195132568|ref|XP_002010715.1| GI21553 [Drosophila mojavensis] gi|193907503|gb|EDW06370.1| GI21553 [Drosophila mojavensis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 54/60 (90%), Gaps = 1/60 (1%)

Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          E C FPG+PAHSS+VF+N  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 36 EGCSFPGSPAHSSVVFTNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 94

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077826|ref|NP_001096984.1| CG9095, isoform B [Drosophila melanogaster] gi|158031821|gb|ABW09416.1| CG9095, isoform B [Drosophila melanogaster]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 53/58 (91%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 37 CSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 93

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478738|ref|XP_002100634.1| GE16067 [Drosophila yakuba] gi|194188158|gb|EDX01742.1| GE16067 [Drosophila yakuba]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 53/58 (91%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 37 CSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 93

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616393|ref|NP_001259562.1| CG9095, isoform C [Drosophila melanogaster] gi|440216784|gb|AGB95404.1| CG9095, isoform C [Drosophila melanogaster]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/58 (79%), Positives = 53/58 (91%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct: 37 CSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 93

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0030617	1141	CG9095 [Drosophila melanogaste	0.655	0.049	0.793	2.3e-21
UNIPROTKB|F1NE59	3406	SVEP1 "Uncharacterized protein	0.678	0.017	0.370	5.2e-06
RGD|2236	258	C4bpb "complement component 4	0.701	0.236	0.363	5.3e-06
FB|FBgn0010114	958	hig "hikaru genki" [Drosophila	0.701	0.063	0.338	5.8e-06
RGD|620428	1236	Cfh "complement factor H" [Rat	0.701	0.049	0.384	1e-05
WB|WBGene00008314	868	C54G4.4 [Caenorhabditis elegan	0.712	0.071	0.333	4.5e-05
MGI|MGI:88385	1234	Cfh "complement component fact	0.678	0.047	0.4	6.7e-05
UNIPROTKB|F1MNH3	3573	SVEP1 "Uncharacterized protein	0.632	0.015	0.362	0.0001
WB|WBGene00002976	622	lev-9 [Caenorhabditis elegans	0.551	0.077	0.38	0.00013
UNIPROTKB|J3QLI0	200	APOH "Beta-2-glycoprotein 1" [	0.724	0.315	0.343	0.00013

FB|FBgn0030617 CG9095 [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 2.3e-21, P = 2.3e-21
 Identities = 46/58 (79%), Positives = 53/58 (91%)

Query:    20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
             C FPG+PAHSS+VFSN  L+ GTVA+Y+CERGFELLGP+RRVCDK GQW+PEGIPFCV
Sbjct:    37 CSFPGSPAHSSVVFSNANLTQGTVASYSCERGFELLGPARRVCDK-GQWVPEGIPFCV 93

GO:0007155 "cell adhesion" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=ISS

UNIPROTKB|F1NE59 SVEP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 5.2e-06, P = 5.2e-06
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query:    15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
             +E  +CR PG PA+  +    +T S G+  T++CE+GF+L G ++  C ++G+W    IP
Sbjct:  1624 TEPVKCRNPGNPANGHMY--GDTYSVGSQVTFSCEKGFQLTGVTKLTCMESGEWS-HSIP 1680

Query:    75 FC 76
             +C
Sbjct:  1681 YC 1682

GO:0005509 "calcium ion binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

RGD|2236 C4bpb "complement component 4 binding protein, beta" [Rattus norvegicus (taxid:10116)]

 Score = 110 (43.8 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 24/66 (36%), Positives = 32/66 (48%)

Query:    11 LPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
             LP +    +C  P  P H    F  ET + G+V TY CE G+ L+G  +  C   G+W P
Sbjct:   128 LP-ICRSRDCEPPETPVHG--YFEGETFTSGSVVTYYCEDGYHLVGTQKVQCSD-GEWSP 183

Query:    71 EGIPFC 76
                P C
Sbjct:   184 S-YPTC 188

GO:0005576 "extracellular region" evidence=IEA

GO:0006958 "complement activation, classical pathway" evidence=IEA

GO:0045087 "innate immune response" evidence=IEA

FB|FBgn0010114 hig "hikaru genki" [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
 Identities = 22/65 (33%), Positives = 31/65 (47%)

Query:    19 ECRFPGAPAHSSI---VFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
             +C  P AP +  I     S   L+ G + T++C  G  L+G S  +C + GQW     PF
Sbjct:   831 QCVMPVAPLNGRIGGTSLSQRRLTVGALVTFSCNDGHSLVGESSIICTENGQWS-HSPPF 889

Query:    76 CVRWC 80
             C   C
Sbjct:   890 CKSQC 894

GO:0007155 "cell adhesion" evidence=ISS

GO:0005576 "extracellular region" evidence=NAS

GO:0008039 "synaptic target recognition" evidence=IMP

RGD|620428 Cfh "complement factor H" [Rattus norvegicus (taxid:10116)]

 Score = 107 (42.7 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query:     9 LVLPEVSEYEECRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGPSRRVCDKT 65
             L+L  V   E+C+ P    +S I+   +S +  S GT ATY C  G+  LG   +VC K 
Sbjct:    10 LILWTVCVAEDCKGPPPRENSEILSGSWSEQLYSEGTQATYKCRPGYRTLGTIVKVC-KN 68

Query:    66 GQWMP 70
             G+W+P
Sbjct:    69 GEWVP 73

GO:0001851 "complement component C3b binding" evidence=ISO

GO:0005615 "extracellular space" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006956 "complement activation" evidence=IEP

GO:0008201 "heparin binding" evidence=ISO

GO:0030449 "regulation of complement activation" evidence=ISO;IDA

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISO

GO:0043499 "eukaryotic cell surface binding" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEP

GO:0071346 "cellular response to interferon-gamma" evidence=IEP

WB|WBGene00008314 C54G4.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 109 (43.4 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query:    20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
             C  PG    + + FS+ + + GT+  Y+C+ G++L G  +R C + G+W    IP C R 
Sbjct:   479 CTSPGVGEATKVTFSSHSYAIGTLCFYSCDSGYDLHGIRQRECAENGRWTGS-IPNCYRK 537

Query:    80 CTG 82
               G
Sbjct:   538 SCG 540

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:88385 Cfh "complement component factor h" [Mus musculus (taxid:10090)]

 Score = 98 (39.6 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
 Identities = 26/65 (40%), Positives = 36/65 (55%)

Query:     9 LVLPEVSEYEECRFPGAPAHSSIVFS---NETLSP-GTVATYACERGFELLGPSRRVCDK 64
             L+L  V   E+C+ P  P  +S + S   +E L P GT ATY C  G+  LG   +VC K
Sbjct:    10 LILWTVCAAEDCKGP-PPRENSEILSGSWSEQLYPEGTQATYKCRPGYRTLGTIVKVC-K 67

Query:    65 TGQWM 69
              G+W+
Sbjct:    68 NGKWV 72

GO:0001851 "complement component C3b binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006957 "complement activation, alternative pathway" evidence=IEA

GO:0008201 "heparin binding" evidence=ISO;IDA

GO:0030449 "regulation of complement activation" evidence=ISO;IMP

GO:0043395 "heparan sulfate proteoglycan binding" evidence=ISO

GO:0043499 "eukaryotic cell surface binding" evidence=IDA

GO:0045087 "innate immune response" evidence=IEA

UNIPROTKB|F1MNH3 SVEP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 0.00010, P = 0.00010
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query:    19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
             +C+ PG P +     S ET + G   T++CE G++L+G +R  C ++G+W    IP+C
Sbjct:  1790 KCKTPGNPENGHS--SGETYTVGAEVTFSCEEGYQLVGAARITCLESGEWS-HLIPYC 1844

GO:0003682 "chromatin binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

WB|WBGene00002976 lev-9 [Caenorhabditis elegans (taxid:6239)]

 Score = 103 (41.3 bits), Expect = 0.00013, P = 0.00013
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query:    19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
             EC  P +P H  +V S+ T    +V TY+C+ G+ L+G  +R+C   G W
Sbjct:   250 ECSRPSSPLHGKVVGSSLTYQ--SVVTYSCDHGYRLVGQVQRICLAEGIW 297

GO:0005576 "extracellular region" evidence=IEA

GO:0030414 "peptidase inhibitor activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IDA

UNIPROTKB|J3QLI0 APOH "Beta-2-glycoprotein 1" [Homo sapiens (taxid:9606)]

 Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
 Identities = 23/67 (34%), Positives = 31/67 (46%)

Query:    11 LPEVSEYEECRFPGAPAHSSIVF-SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM 69
             LPE  E + C FP  P +  + + +  TL     AT+ C  G+ L GP    C K G W 
Sbjct:   137 LPECREVK-CPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW- 194

Query:    70 PEGIPFC 76
                +P C
Sbjct:   195 -SAMPSC 200

GO:0005615 "extracellular space" evidence=IEA

GO:0030193 "regulation of blood coagulation" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
cd00033	57	cd00033, CCP, Complement control protein (CCP) mod	2e-12
smart00032	56	smart00032, CCP, Domain abundant in complement con	2e-12
pfam00084	56	pfam00084, Sushi, Sushi domain (SCR repeat)	9e-08
PHA02639	295	PHA02639, PHA02639, EEV host range protein; Provis	1e-05
PHA02817	225	PHA02817, PHA02817, EEV Host range protein; Provis	2e-04
PHA02831	268	PHA02831, PHA02831, EEV host range protein; Provis	2e-04

>gnl|CDD|153056 cd00033, CCP, Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

 Score = 56.3 bits (136), Expect = 2e-12
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C  P  P + ++  S  + S G+  TY+C  G+ L+G S   C + G W P   P C 
Sbjct: 1  CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPP-PPTCE 57

SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function. Length = 57

>gnl|CDD|214478 smart00032, CCP, Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)

 Score = 56.0 bits (135), Expect = 2e-12
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          C  P    + ++  S+ T S G   TY+C+ G+ L+G S   C + G W P   P C
Sbjct: 1  CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPP-PPTC 56

The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII. Length = 56

>gnl|CDD|215703 pfam00084, Sushi, Sushi domain (SCR repeat)

 Score = 44.1 bits (104), Expect = 9e-08
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          C  P    H  I  +  +   G+V  Y C+ G+ L+G S   C   G W P  +P C
Sbjct: 1  CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPP-LPEC 56

Length = 56

>gnl|CDD|165022 PHA02639, PHA02639, EEV host range protein; Provisional

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 12  PEVSEYEECRFPGAP-AHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
           P + +   CRFP     + + + SN+     T   ++C+ GF+L+G     C+    W P
Sbjct: 141 PPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFP 200

Query: 71  EGIPFCVR 78
             IP CVR
Sbjct: 201 S-IPTCVR 207

Length = 295

>gnl|CDD|165167 PHA02817, PHA02817, EEV Host range protein; Provisional

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 16/76 (21%)

Query: 12  PEVSEYEECRFP--------GAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD 63
             V +   CRFP        G P      + +E        +++C+ GF L+G    VC 
Sbjct: 81  FPVCKIIRCRFPALQNGFVNGIPDSKKFYYESEV-------SFSCKPGFVLIGTKYSVCG 133

Query: 64  KTGQWMPEGIPFCVRW 79
               W+P+ +P C R 
Sbjct: 134 INSSWIPK-VPICSRD 148

Length = 225

>gnl|CDD|165176 PHA02831, PHA02831, EEV host range protein; Provisional

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 41  GTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           G +  + C++GF LLG S   CD    W P GIP CV+
Sbjct: 161 GDIVNFKCKKGFILLGSSVSTCDINSIWYP-GIPKCVK 197

Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PHA02817	225	EEV Host range protein; Provisional	99.77
PHA02831	268	EEV host range protein; Provisional	99.76
PHA02639	295	EEV host range protein; Provisional	99.73
PHA02831	268	EEV host range protein; Provisional	99.72
cd00033	57	CCP Complement control protein (CCP) modules (aka	99.71
PHA02927	263	secreted complement-binding protein; Provisional	99.69
smart00032	57	CCP Domain abundant in complement control proteins	99.69
PHA02639	295	EEV host range protein; Provisional	99.67
PF00084	56	Sushi: Sushi domain (SCR repeat); InterPro: IPR000	99.67
PHA02927	263	secreted complement-binding protein; Provisional	99.63
PHA02817	225	EEV Host range protein; Provisional	99.58
PHA02954	317	EEV membrane glycoprotein; Provisional	99.54
PHA02954	317	EEV membrane glycoprotein; Provisional	99.48
smart00008	70	HormR Domain present in hormone receptors.	94.37
PF02793	66	HRM: Hormone receptor domain; InterPro: IPR001879	92.11
PF12662	24	cEGF: Complement Clr-like EGF-like	84.28
KOG4564|consensus	473		82.42

>PHA02817 EEV Host range protein; Provisional

Probab=99.77  E-value=2.9e-18  Score=106.01  Aligned_cols=76  Identities=25%  Similarity=0.591  Sum_probs=65.4

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEe--cCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVF--SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~--~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      .++|+  |+|++..|  +.+.|+.|. +.||.+..  ....|.+|++|+|+|++||.|.|+..++|+++|+|+++ .|.|
T Consensus        68 ~i~C~~dG~Ws~~~P~C~~v~C~~P~-i~NG~v~~~~~~~~y~yg~~Vty~C~~Gy~L~G~~~~tC~~~G~WSp~-~P~C  145 (225)
T PHA02817         68 NIICEKDGKWNKEFPVCKIIRCRFPA-LQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPK-VPIC  145 (225)
T ss_pred             eEEECCCCcCCCCCCeeeeeECCCCC-CcCceeEccccCCceEcCCEEEEEcCCCCEEcCCCceEECCCCeECCC-CCEe
Confidence            57998  89998777  567999875 67998763  34678899999999999999999999999999999997 9999


Q ss_pred             eecc
Q psy6641          77 VRWC   80 (87)
Q Consensus        77 ~~~~   80 (87)
                      .+..
T Consensus       146 ~~~~  149 (225)
T PHA02817        146 SRDN  149 (225)
T ss_pred             ecCC
Confidence            8754

>PHA02831 EEV host range protein; Provisional

Probab=99.76  E-value=1.6e-18  Score=109.50  Aligned_cols=75  Identities=28%  Similarity=0.674  Sum_probs=66.3

Q ss_pred             eeEEc-ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeec
Q psy6641           3 NMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus         3 ~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      .++|. |.|++..|  +.+.|+.|. +.||.+......|.+|++|+|+|++||.|.|+..++|+.+|+|+++ .|.|++.
T Consensus       121 ~~tC~dG~WS~~~P~C~~i~C~~P~-i~NG~i~~~~~~y~~G~~Vty~C~~GY~L~Gss~~tC~~nG~Wsp~-~P~C~~~  198 (268)
T PHA02831        121 TVKCINKQWVPKYPVCKLIRCKYPA-LQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPG-IPKCVKD  198 (268)
T ss_pred             eeEeCCCcCCCCCCeeeEeeCCCCC-CCCCccccCCCceecCCEEEEEcCCCCEECCCccEEECCCCeECCC-CCCccCc
Confidence            57899 99998888  567898874 7799887555779999999999999999999999999999999997 9999874

>PHA02639 EEV host range protein; Provisional

Probab=99.73  E-value=3e-17  Score=105.25  Aligned_cols=76  Identities=32%  Similarity=0.651  Sum_probs=64.5

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEe--cCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVF--SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~--~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      .++|+  |+|++..|  +.+.|+.| .+.||.+..  ....|.+|++|+|+|++||.|.|+..++|+.+|+|+++ +|.|
T Consensus       128 ~~~C~~dG~WS~~~P~C~~i~C~~P-~i~nG~v~~~~~~~~~~yg~~V~fsC~~GY~L~Gs~~~tC~~nG~Ws~~-~P~C  205 (295)
T PHA02639        128 KITCIQDKSWKPDPPICKMINCRFP-ALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPS-IPTC  205 (295)
T ss_pred             eEEECCCCeECCCCCeeeeEEeCCC-CCCCCceEcccCCCceecCCEEEEEcCCCCeEcCCCcEEECCCCeECCC-CCeE
Confidence            57998  89998887  56789977 467887653  23568899999999999999999999999999999998 9999


Q ss_pred             eecc
Q psy6641          77 VRWC   80 (87)
Q Consensus        77 ~~~~   80 (87)
                      ++..
T Consensus       206 ~~~~  209 (295)
T PHA02639        206 VRNK  209 (295)
T ss_pred             eccC
Confidence            8754

>PHA02831 EEV host range protein; Provisional

Probab=99.72  E-value=4e-17  Score=103.22  Aligned_cols=75  Identities=24%  Similarity=0.478  Sum_probs=65.7

Q ss_pred             eeeEEc-ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcC----CCCEEcCCCceeeCCCCccCCCCCC
Q psy6641           2 VNMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACE----RGFELLGPSRRVCDKTGQWMPEGIP   74 (87)
Q Consensus         2 ~~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~----~gy~l~G~~~~~C~~~g~Ws~~~~p   74 (87)
                      +.++|. |+|++.++  +.+.|+.|+.+.||.+...+..|.+|+.|+|+|+    +||.|.|++.++|. +|+|+++ .|
T Consensus        57 ~~itC~dG~WS~~P~C~~~~~C~~Pp~i~NG~i~~~~~~Y~~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~-~P  134 (268)
T PHA02831         57 VFVTCNNGSWSTKNMCIGKRNCKDPVTILNGYIKNKKDQYSFGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPK-YP  134 (268)
T ss_pred             eeEEeCCCccCCCCcccccccCcCCCCCCCCEEeccCCceeCCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCC-CC
Confidence            457899 99997655  2468999999999999877777999999999999    69999999999996 9999997 99


Q ss_pred             eEee
Q psy6641          75 FCVR   78 (87)
Q Consensus        75 ~C~~   78 (87)
                      .|++
T Consensus       135 ~C~~  138 (268)
T PHA02831        135 VCKL  138 (268)
T ss_pred             eeeE
Confidence            9985

>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system

Probab=99.71  E-value=6.6e-17  Score=80.39  Aligned_cols=57  Identities=33%  Similarity=0.771  Sum_probs=52.2

Q ss_pred             CCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        20 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      |+.|+.+.||.+......|.+|++++|.|++||.|.|+..++|+.+|+|+.. .|.|+
T Consensus         1 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~-~p~C~   57 (57)
T cd00033           1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPP-PPTCE   57 (57)
T ss_pred             CcCCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCCCeeEECCCCeECCC-CcccC
Confidence            7888888899998766789999999999999999999999999999999997 88884

SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.

>PHA02927 secreted complement-binding protein; Provisional

Probab=99.69  E-value=1.1e-16  Score=101.41  Aligned_cols=73  Identities=23%  Similarity=0.539  Sum_probs=62.6

Q ss_pred             eeEEc-ceecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641           3 NMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus         3 ~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .++|. |.|+. .|  +.+.|+.|. +.||.+... +..|.+|++|+|+|++||.|.|+..++|+.+|+|+++ +|.|.+
T Consensus       187 ~~~C~~G~Ws~-~P~C~~v~C~~P~-i~ng~~~~~~k~~y~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~-~P~C~~  263 (263)
T PHA02927        187 GVLCSGGEWSD-PPTCQIVKCPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWQPE-LPKCVR  263 (263)
T ss_pred             eeEECCCccCC-CCeEeEeECcCCC-CCCCEEecCCCCccccCCEEEEECCCCCeEcCCCCeEECCCCEECCC-CCeecC
Confidence            46899 99997 46  567999875 668887643 4679999999999999999999999999999999997 999964

>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR)

Probab=99.69  E-value=1.1e-16  Score=79.37  Aligned_cols=56  Identities=38%  Similarity=0.763  Sum_probs=50.7

Q ss_pred             CCCCCCCCCeEEEecC-CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641          20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus        20 C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      |+.|+.+.||.+.... ..|.+|++++|.|++||.|.|...++|+.+|+|+.. .|.|
T Consensus         1 C~~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~g~~~~~C~~~g~Ws~~-~p~C   57 (57)
T smart00032        1 CPPPPDIENGTITSSNKGTYSVGDTVTYSCNPGYTLIGSSTITCLEDGTWSPP-APTC   57 (57)
T ss_pred             CcCCCCCCCCEEecCCCCeecCCCEEEEEcCCCCEEcCCCeeEECCCCEECCC-CCcC
Confidence            7788889999998764 679999999999999999999999999999999987 7877

The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.

>PHA02639 EEV host range protein; Provisional

Probab=99.67  E-value=3.5e-16  Score=100.33  Aligned_cols=75  Identities=21%  Similarity=0.466  Sum_probs=67.0

Q ss_pred             eeEEc-----ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCC----CCEEcCCCceeeCCCCccCCC
Q psy6641           3 NMKCH-----NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACER----GFELLGPSRRVCDKTGQWMPE   71 (87)
Q Consensus         3 ~~~C~-----g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~----gy~l~G~~~~~C~~~g~Ws~~   71 (87)
                      .++|+     |+|++..|  +.+.|+.|+.+.||.+...+..|.+|+.++|+|++    ||.|.|+..++|+.+|+|+++
T Consensus        61 ~~~C~~d~~nG~WS~~~P~C~~~~C~~Pp~~~nG~i~~~~~~y~~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~~  140 (295)
T PHA02639         61 FRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPD  140 (295)
T ss_pred             eEEEeCCCCCCEECCCCCEEeeccCcCCCCCCCcEEecCCCceECCCEEEEEeCCCCCCceEECCCCeEEECCCCeECCC
Confidence            57896     48998888  56889999999999998766789999999999999    599999999999999999997


Q ss_pred             CCCeEee
Q psy6641          72 GIPFCVR   78 (87)
Q Consensus        72 ~~p~C~~   78 (87)
                       .|.|++
T Consensus       141 -~P~C~~  146 (295)
T PHA02639        141 -PPICKM  146 (295)
T ss_pred             -CCeeee
Confidence             999985

>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins

Probab=99.67  E-value=5.3e-17  Score=80.63  Aligned_cols=56  Identities=38%  Similarity=0.779  Sum_probs=50.8

Q ss_pred             CCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641          20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus        20 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      |+.|+.+.|+.+......|.+|++++|+|+.||.+.|...++|+.+|+|+.+ .|.|
T Consensus         1 C~~P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~-~p~C   56 (56)
T PF00084_consen    1 CPPPPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGSSTITCQSNGQWSPP-PPTC   56 (56)
T ss_dssp             EESESCBTTEEEESSSSSEETTEEEEEEESTTEEEESSSEEEEETTSEESST-TSEE
T ss_pred             CcCCCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCCCEEEECCCCEECCC-CCCC
Confidence            6778889999777766889999999999999999999999999999999997 8887

The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....

>PHA02927 secreted complement-binding protein; Provisional

Probab=99.63  E-value=2.5e-15  Score=95.29  Aligned_cols=73  Identities=27%  Similarity=0.588  Sum_probs=63.3

Q ss_pred             eeEEc-c-----eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCC
Q psy6641           3 NMKCH-N-----LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP   74 (87)
Q Consensus         3 ~~~C~-g-----~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p   74 (87)
                      .++|+ +     +|++..|  +.+.|+.|+.+.||.+...+..|.+|+.|+|+|++||.|.|+..++|. +|+|+.  +|
T Consensus       123 ~~~C~~~~~g~~~Ws~~~P~C~~~~C~~P~~~~nG~~~~~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~G~Ws~--~P  199 (263)
T PHA02927        123 KSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD--PP  199 (263)
T ss_pred             eeEEEeCCCCcceECCCCCccccccCCCCCCCCCcEEcCCcccccCCCEEEEECCCCCEECCCCeeEEC-CCccCC--CC
Confidence            46897 3     6998877  577999999999999876556688999999999999999999999997 899995  68


Q ss_pred             eEee
Q psy6641          75 FCVR   78 (87)
Q Consensus        75 ~C~~   78 (87)
                      .|++
T Consensus       200 ~C~~  203 (263)
T PHA02927        200 TCQI  203 (263)
T ss_pred             eEeE
Confidence            9985

>PHA02817 EEV Host range protein; Provisional

Probab=99.58  E-value=7.7e-15  Score=90.88  Aligned_cols=62  Identities=24%  Similarity=0.641  Sum_probs=56.0

Q ss_pred             CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCC-----CEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERG-----FELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~g-----y~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.+.|+.|+.+.||.+......|.+|+.|+|+|++|     |.|.|+..++|+.+|+|+++ +|.|++
T Consensus        20 ~~~~C~~PP~i~NG~i~~~~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~-~P~C~~   86 (225)
T PHA02817         20 DLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKE-FPVCKI   86 (225)
T ss_pred             cCcCCCCCCCCCCCEEecCCCceeCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCC-CCeeee
Confidence            467899999999999876667899999999999997     89999999999999999987 899984

>PHA02954 EEV membrane glycoprotein; Provisional

Probab=99.54  E-value=3.7e-14  Score=91.70  Aligned_cols=72  Identities=31%  Similarity=0.619  Sum_probs=59.5

Q ss_pred             eeEEc-ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeecc
Q psy6641           3 NMKCH-NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC   80 (87)
Q Consensus         3 ~~~C~-g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~~   80 (87)
                      .++|+ ++|++ .| ....|+.| .+.||.+..  ..|.+|++|+|+|++||.|.|++.++|. +|+|+++ .|.|.+..
T Consensus       168 ~i~C~~~~Ws~-~P~C~~~C~~P-~i~NG~~sg--~~y~~Gd~Vtf~C~~Gy~L~Gs~~itC~-~g~Ws~~-~P~C~~~~  241 (317)
T PHA02954        168 YISCTANSWNV-IPSCQQKCDIP-SLSNGLISG--STFSIGGVIHLSCKSGFTLTGSPSSTCI-DGKWNPV-LPICVRSN  241 (317)
T ss_pred             eeEECCCcCCC-CCccccccCCC-CCCCCeEcC--CCcccCCEEEEECCCCCeECCCcceEEC-CCeEeCC-CCceeCCC
Confidence            57899 89974 45 33479864 678998754  4688999999999999999999999997 9999997 89998753

>PHA02954 EEV membrane glycoprotein; Provisional

Probab=99.48  E-value=1.5e-13  Score=88.87  Aligned_cols=73  Identities=29%  Similarity=0.525  Sum_probs=58.9

Q ss_pred             eEEc-----ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641           4 MKCH-----NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus         4 ~~C~-----g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      ++|.     ++|++... +.+.|++| .+.||.+......|.+|+.|+|+|++||.|.|++.++|+++ .|+ + .|.|+
T Consensus       108 ~~C~~~g~~~~WS~~ptC~~i~C~pP-~i~NG~~~~~~~~Y~yGd~VtysC~~GY~L~Gs~~i~C~~~-~Ws-~-~P~C~  183 (317)
T PHA02954        108 FRCEEKNGNTSWNDTVTCPNAECQPL-QLEHGSCQPVKEKYSFGEHITINCDVGYEVIGASYISCTAN-SWN-V-IPSCQ  183 (317)
T ss_pred             EEeCCCCCCCccCCCCeecceECCCC-CCCCCeeccCCCceeCCCEEEEEcCCCCEECcCCeeEECCC-cCC-C-CCccc
Confidence            5674     46986433 57789755 57799987666779999999999999999999999999987 697 5 79998


Q ss_pred             ecc
Q psy6641          78 RWC   80 (87)
Q Consensus        78 ~~~   80 (87)
                      +.|
T Consensus       184 ~~C  186 (317)
T PHA02954        184 QKC  186 (317)
T ss_pred             ccc
Confidence            643

>smart00008 HormR Domain present in hormone receptors

Probab=94.37  E-value=0.054  Score=27.86  Aligned_cols=33  Identities=24%  Similarity=0.590  Sum_probs=25.9

Q ss_pred             cCCCCEEEEEcCCCCEEcCC---CceeeCCCCccCC
Q psy6641          38 LSPGTVATYACERGFELLGP---SRRVCDKTGQWMP   70 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~l~G~---~~~~C~~~g~Ws~   70 (87)
                      -..|+++...|..++.....   ..+.|..+|.|+.
T Consensus        18 t~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~   53 (70)
T smart00008       18 TPAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSP   53 (70)
T ss_pred             CCCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCcc
Confidence            44589999999998765432   6789999999986

>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=92.11  E-value=0.073  Score=26.87  Aligned_cols=33  Identities=30%  Similarity=0.649  Sum_probs=25.6

Q ss_pred             cCCCCEEEEEcCCCCEE-----cCCCceeeCCCCccCC
Q psy6641          38 LSPGTVATYACERGFEL-----LGPSRRVCDKTGQWMP   70 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~l-----~G~~~~~C~~~g~Ws~   70 (87)
                      -..|.+++..|..++..     .|...+.|..+|+|..
T Consensus        17 T~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~   54 (66)
T PF02793_consen   17 TPAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEE   54 (66)
T ss_dssp             BETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBEC
T ss_pred             CCCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCC
Confidence            44588999999988742     2446789999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=84.28  E-value=0.74  Score=18.75  Aligned_cols=17  Identities=29%  Similarity=0.823  Sum_probs=11.9

Q ss_pred             EEcCCCCEEcCCCceeeC
Q psy6641          46 YACERGFELLGPSRRVCD   63 (87)
Q Consensus        46 ~~C~~gy~l~G~~~~~C~   63 (87)
                      -+|.+||.|.... ..|.
T Consensus         4 C~C~~Gy~l~~d~-~~C~   20 (24)
T PF12662_consen    4 CSCPPGYQLSPDG-RSCE   20 (24)
T ss_pred             eeCCCCCcCCCCC-Cccc
Confidence            4789999987543 4564

>KOG4564|consensus

Probab=82.42  E-value=1.7  Score=30.48  Aligned_cols=36  Identities=31%  Similarity=0.605  Sum_probs=26.6

Q ss_pred             cCCCCEEEEEcCCCCE-----EcCCCceeeCCCCccCCCCCC
Q psy6641          38 LSPGTVATYACERGFE-----LLGPSRRVCDKTGQWMPEGIP   74 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~Ws~~~~p   74 (87)
                      -..|+.+...|.+.+.     -.|...+.|.++|+|+.. ++
T Consensus        77 t~~G~~v~~~CP~yf~~~~~~~~~~v~R~C~~~G~W~~~-~~  117 (473)
T KOG4564|consen   77 TPAGTLVTVPCPDYFPGFSYSTSGNVTRNCTSNGTWSER-PP  117 (473)
T ss_pred             CCCCceEEecCccccCCCcccCCCceEeecCCCCccCCC-CC
Confidence            3458888888877443     335678899999999975 55

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
2yra_A	74	Seizure 6-like protein isoform 3; disulfide bond,	2e-11
1ly2_A	130	CD21, complement receptor type 2; epstein BARR vir	3e-11
1ly2_A	130	CD21, complement receptor type 2; epstein BARR vir	3e-09
2ehf_A	73	CUB and sushi domain-containing protein 1; CUB and	7e-11
1rid_A	244	Complement control protein; regulation, SCR, immun	7e-10
1rid_A	244	Complement control protein; regulation, SCR, immun	1e-07
1rid_A	244	Complement control protein; regulation, SCR, immun	2e-06
1rid_A	244	Complement control protein; regulation, SCR, immun	2e-06
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	7e-10
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	1e-08
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	2e-08
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	4e-06
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	1e-09
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	2e-08
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	3e-08
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	4e-07
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	2e-09
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	4e-08
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	4e-06
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	4e-09
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	2e-08
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	3e-08
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	7e-08
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	1e-07
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	2e-07
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	2e-07
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	4e-07
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	1e-06
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	3e-05
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	1e-04
3hrz_D	741	Complement factor B; serine protease, glycosilated	7e-09
3hrz_D	741	Complement factor B; serine protease, glycosilated	7e-09
3hrz_D	741	Complement factor B; serine protease, glycosilated	1e-06
1h03_P	125	Complement decay-accelerating factor; immune syste	8e-09
1h03_P	125	Complement decay-accelerating factor; immune syste	5e-08
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	9e-09
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	1e-06
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	5e-06
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	2e-05
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	3e-04
2xrb_A	290	Complement regulatory protein CRRY; immune system,	2e-08
2xrb_A	290	Complement regulatory protein CRRY; immune system,	2e-06
2xrb_A	290	Complement regulatory protein CRRY; immune system,	6e-06
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	3e-08
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	4e-07
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	6e-06
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	2e-05
3gov_A	155	MAsp-1; complement, serine protease, beta barrel,	3e-08
3gov_A	155	MAsp-1; complement, serine protease, beta barrel,	5e-07
3iyp_F	381	Complement decay-accelerating factor; virus, recep	4e-08
3iyp_F	381	Complement decay-accelerating factor; virus, recep	2e-06
3iyp_F	381	Complement decay-accelerating factor; virus, recep	3e-05
3iyp_F	381	Complement decay-accelerating factor; virus, recep	7e-05
2wii_C	277	H factor 1, complement factor H; immune system, su	5e-08
2wii_C	277	H factor 1, complement factor H; immune system, su	5e-08
2wii_C	277	H factor 1, complement factor H; immune system, su	8e-08
2wii_C	277	H factor 1, complement factor H; immune system, su	5e-06
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	5e-08
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	2e-06
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	2e-06
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	2e-05
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	1e-04
1ntj_A	320	Complement receptor related protein; immunology, g	8e-08
1ntj_A	320	Complement receptor related protein; immunology, g	4e-06
1ntj_A	320	Complement receptor related protein; immunology, g	2e-05
1ntj_A	320	Complement receptor related protein; immunology, g	3e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	3e-07
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	7e-07
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	2e-06
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	7e-06
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	8e-06
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	2e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	2e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	2e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	4e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	6e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	7e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	8e-05
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	1e-04
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	2e-04
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	5e-04
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	6e-04
1gkg_A	136	Complement receptor type 1; module, SCR, structure	3e-07
1gkg_A	136	Complement receptor type 1; module, SCR, structure	4e-05
3r62_A	129	H factor 1, complement factor H; immunity, repeati	4e-07
3r62_A	129	H factor 1, complement factor H; immunity, repeati	5e-05
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	5e-07
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	8e-07
3sw0_X	188	H factor 1, complement factor H; innate immune res	5e-07
3sw0_X	188	H factor 1, complement factor H; innate immune res	4e-06
3sw0_X	188	H factor 1, complement factor H; innate immune res	4e-06
2uwn_A	187	H factor 1, human complement factor H; alternative	5e-07
2uwn_A	187	H factor 1, human complement factor H; alternative	1e-04
1gkn_A	128	Complement receptor type 1; module, SCR, structure	6e-07
1gkn_A	128	Complement receptor type 1; module, SCR, structure	1e-06
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	8e-07
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	3e-06
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	3e-06
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	4e-06
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	5e-06
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	9e-06
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	1e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	1e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	2e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	3e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	4e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	5e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	9e-05
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	6e-04
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	8e-04
2a55_A	133	C4B-binding protein; complement, SCR, CCP module,	1e-06
2a55_A	133	C4B-binding protein; complement, SCR, CCP module,	1e-06
2qy0_A	159	Complement C1R subcomponent; serine protease, beta	3e-06
2yby_A	124	Complement factor H; immune system, complement reg	2e-05
3tvj_A	86	Mannan-binding lectin serine protease 2 A chain; i	2e-04
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	2e-04

>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain, SCR, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 53.2 bits (128), Expect = 2e-11
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 15 SEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
          S    C       +     S+  L  G   TY C+ G++++G     C     W  +  P
Sbjct: 3  SGSSGCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSD-PP 61

Query: 75 FCVR 78
          FC +
Sbjct: 62 FCEK 65

>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of comple activation, short consensus repeat, viral receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C Length = 130

 Score = 54.5 bits (131), Expect = 3e-11
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 13  EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
             ++Y  C  P  P     +  +     G   T+AC+  F + G     C     W P  
Sbjct: 65  YFNKYSSCPEPIVPGGY-KIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTR 123

Query: 73  IPFCVR 78
           +P CV 
Sbjct: 124 LPTCVS 129

>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of comple activation, short consensus repeat, viral receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C Length = 130

 Score = 49.1 bits (117), Expect = 3e-09
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
          C  P    +  I + +  ++ GTV  Y+C   F L+G    +C       G W     P 
Sbjct: 4  CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APK 62

Query: 76 CVR 78
          C  
Sbjct: 63 CEY 65

>2ehf_A CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1, CSMD1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 52.1 bits (125), Expect = 7e-11
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
          C  PG PA+     +  +   G   T+ C   FEL+G     C +  QW     P C   
Sbjct: 14 CGDPGIPAYGKR--TGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWSGN-KPSCSGP 70

Query: 80 CTG 82
           +G
Sbjct: 71 SSG 73

>1rid_A Complement control protein; regulation, SCR, immune system; HET: IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A 1vvc_A 1vvd_A 1vve_A Length = 244

 Score = 52.2 bits (125), Expect = 7e-10
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           C  P             + S      + C+ G++L G S   C     W PE +P CVR
Sbjct: 187 CPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPE-LPKCVR 244

>1rid_A Complement control protein; regulation, SCR, immune system; HET: IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A 1vvc_A 1vvd_A 1vve_A Length = 244

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           +C+ P + ++       +  + G+V TY+C  G+ L+G S  +C   G+W     P C  
Sbjct: 128 KCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW--SDPPTCQI 184

>1rid_A Complement control protein; regulation, SCR, immune system; HET: IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A 1vvc_A 1vvd_A 1vve_A Length = 244

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
                   +S    +N   + G    Y C  G+            TG         C++
Sbjct: 6  SRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTGWTL-FNQCIK 64

>1rid_A Complement control protein; regulation, SCR, immune system; HET: IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A 1vvc_A 1vvd_A 1vve_A Length = 244

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 7/63 (11%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
           C  P    +  +      +  G+  TY+C  G+ L+G S+  C      +  W PE  P 
Sbjct: 67  CPSPRDIDNGQLDIGG--VDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE-API 123

Query: 76  CVR 78
           C  
Sbjct: 124 CES 126

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M* Length = 252

 Score = 52.2 bits (125), Expect = 7e-10
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           CRFP       I    +         + C++GF L G    VCD    W P  +P C++
Sbjct: 194 CRFPVVENGKQISGFGKKFYYKATVMFECDKGFYLDGSDTIVCDSNSTWDPP-VPKCLK 251

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M* Length = 252

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 20 CRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGIPFC 76
          C  P       ++   +     G    Y C++G+  + P  +  +CD+   W+P     C
Sbjct: 1  CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDAC 60

Query: 77 VR 78
           R
Sbjct: 61 YR 62

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M* Length = 252

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP--EGIPFC 76
            C +   P +   V +N T   G    + C  G+ L+G     C+  G         P C
Sbjct: 64  TCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPIC 123

Query: 77  VR 78
            +
Sbjct: 124 EK 125

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M* Length = 252

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 7/69 (10%)

Query: 16  EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG-----FELLGPSRRVCDKTGQWM 69
           E   C  P    +    FS  E        TY+C+       F L+G S   C     W 
Sbjct: 124 EKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWS 183

Query: 70  PEGIPFCVR 78
               P C  
Sbjct: 184 RA-APECKV 191

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A Length = 319

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 20  CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           C FP  P +  + +    TL     AT+ C  G+ L GP    C K G W    +P C  
Sbjct: 186 CPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW--SAMPSCKA 243

Query: 79  WCT 81
            C 
Sbjct: 244 SCK 246

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A Length = 319

 Score = 48.4 bits (115), Expect = 2e-08
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C F G   + ++ ++          +++C  GF L G     C + G+W PE +P C  
Sbjct: 64  VCPFAGILENGAVRYTT--FEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVCAP 120

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A Length = 319

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGP-SRRVCDKTGQWMPEGIPFCVR 78
          C  P     S++V       PG   TY+C+ G+   G   + +C  TG W       C  
Sbjct: 4  CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPIN-TLKCTP 62

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A Length = 319

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 6/63 (9%)

Query: 20  CRFPGAPAHSSIVFSNETLS----PGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
           C  P  P  +++     +          A + C     + G     C   G W    +P 
Sbjct: 123 CPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWTK--LPE 180

Query: 76  CVR 78
           C  
Sbjct: 181 CRE 183

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens} Length = 223

 Score = 51.1 bits (122), Expect = 2e-09
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C  P +  +        +   G   ++ CE GF L G   R C   G W  E    C  
Sbjct: 68  RCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGE-TAVCDN 126

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens} Length = 223

 Score = 47.2 bits (112), Expect = 4e-08
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C  PG    +    +      G    Y C     L G S R C   G W     P C +
Sbjct: 130 HCPNPGISLGAVR--TGFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGT-EPICRQ 186

Query: 79  WCTG 82
             + 
Sbjct: 187 PYSY 190

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens} Length = 223

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
          C      +  +   S+   +PG++ TY+C +G     P+ R+C  +GQW
Sbjct: 4  CPQNVNISGGTFTLSH-GWAPGSLLTYSCPQGL-YPSPASRLCKSSGQW 50

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 50.5 bits (120), Expect = 4e-09
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 1/72 (1%)

Query: 13  EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
             +   +C  P       +    +  +      +AC  GF L G  +  C+  G W P  
Sbjct: 324 LSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIRCNAQGTWEPS- 382

Query: 73  IPFCVRWCTGLG 84
            P C + C    
Sbjct: 383 APVCEKECQAPP 394

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 48.6 bits (115), Expect = 2e-08
 Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 1/70 (1%)

Query: 13  EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
                 +C          I             T+ C  GF L G S+  C     W PE 
Sbjct: 575 LSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQIRCKADNTWDPE- 633

Query: 73  IPFCVRWCTG 82
           IP C +    
Sbjct: 634 IPVCEKETCQ 643

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 48.2 bits (114), Expect = 3e-08
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKT----GQWMPEGIPF 75
          C  P    +  I + +  ++ GTV  Y+C   F L+G    +C       G W     P 
Sbjct: 3  CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APK 61

Query: 76 CVRWC 80
          C  + 
Sbjct: 62 CEYFN 66

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 47.0 bits (111), Expect = 7e-08
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 13  EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
             ++Y  C  P  P     +  +     G   T+AC+  F + G     C     W P  
Sbjct: 64  YFNKYSSCPEPIVP-GGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTR 122

Query: 73  IPFCVRWC 80
           +P CV   
Sbjct: 123 LPTCVSVF 130

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 20  CRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           C  P              +   G V T  CE G+ L G  +  C    QW P  +  C  
Sbjct: 892 CSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQSDHQWNPP-LAVCRS 950

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 19  ECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
           EC+ P    +      +     PGT   Y+C  G+ L+G     C   G W P  +P C 
Sbjct: 389 ECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPP-VPQCK 447

Query: 78  R 78
            
Sbjct: 448 V 448

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 13  EVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEG 72
                  C  P       +  ++   S   +    C  GF + G     C     W+P  
Sbjct: 761 RSPPVTRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSRVIRCHTDNTWVPG- 819

Query: 73  IPFCVRWCT 81
           +P C++   
Sbjct: 820 VPTCIKKAF 828

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 44.7 bits (105), Expect = 4e-07
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 19  ECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
           EC       +      N   ++PG   TY+CE G+ L+G     C  +G+W     P C 
Sbjct: 133 ECPALPMIHNGHHTSENVGSIAPGLSVTYSCESGYLLVGEKIINCLSSGKWSAV-PPTCE 191

Query: 78  R 78
            
Sbjct: 192 E 192

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 13  EVSEYEECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
               +  C  P    + +    N    SPG    Y+C++G+ L+G +  +C   G W   
Sbjct: 824 IKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLLCTHEGTWSQP 883

Query: 72  GIPFCVR 78
             P C  
Sbjct: 884 -APHCKE 889

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 39.3 bits (91), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVC----DKTG 66
             + +   C  P    +        E    G   +Y C++GF LLG  +  C       G
Sbjct: 691 IPLCKVIHCHPPPVIVNGKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHG 750

Query: 67  QWMPEGIPFCVRWCT 81
            W     P C+R   
Sbjct: 751 SWSGP-SPQCLRSPP 764

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens} Length = 951

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
           C+  G   +  +      L  G  A + C+ G+ L GP    C   GQ 
Sbjct: 195 CKSLGRFPNGKVKEPP-ILRVGVTANFFCDEGYRLQGPPSSRCVIAGQG 242

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
           C  PG P  +  V S   L      TY C RG  L G  RR C + G W     P C   
Sbjct: 140 CSNPGIPIGTRKVGSQYRL--EDSVTYHCSRGLTLRGSQRRTCQEGGSWSGT-EPSCQDS 196

Query: 80  CTG 82
              
Sbjct: 197 FMY 199

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 49.7 bits (118), Expect = 7e-09
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C  P    +      +   +     ++ C  G+ L G + R C   G+W  +    C  
Sbjct: 77  HCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ-TAICDN 135

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 13/50 (26%), Positives = 13/50 (26%), Gaps = 3/50 (6%)

Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
           C   G             L  G    Y C  GF       R C  TG W
Sbjct: 11 SCSLEGVEIKGGSF---RLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSW 57

>1h03_P Complement decay-accelerating factor; immune system protein, enteroviral receptor, bacterial receptor, ligand for CD97, complement pathway; 1.7A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P 1h04_P 2qzd_A Length = 125

 Score = 47.9 bits (114), Expect = 8e-09
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
           C  P    +  I    +        TYAC +GF ++G     C   +  G+W     P C
Sbjct: 65  CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 123

>1h03_P Complement decay-accelerating factor; immune system protein, enteroviral receptor, bacterial receptor, ligand for CD97, complement pathway; 1.7A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P 1h04_P 2qzd_A Length = 125

 Score = 46.0 bits (109), Expect = 5e-08
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
          C  PG   +  I         G   +++C  G++L G +   C  +G   QW    +P C
Sbjct: 3  CPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPEC 60

Query: 77 VR 78
            
Sbjct: 61 RE 62

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} Length = 551

 Score = 49.6 bits (118), Expect = 9e-09
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
           P+  E  +C  P    ++ ++  N    S   +  + C  GF + G S   C    +W P
Sbjct: 190 PQCIELNKCTPPPYVENAVMLSENRSLFSLRDIVEFRCHPGFIMKGASSVHCQSLNKWEP 249

Query: 71  EGIPFCVR 78
           E +P C +
Sbjct: 250 E-LPSCFK 256

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} Length = 551

 Score = 43.5 bits (102), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPF 75
           +C+ P  P +  +         G+   Y C +G+ L+G S  VC   D++  W  E  P 
Sbjct: 63  QCKTPSDPENGLVHVHTGI-EFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTE-API 120

Query: 76  CVR 78
           C  
Sbjct: 121 CEW 123

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} Length = 551

 Score = 41.9 bits (98), Expect = 5e-06
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 4/61 (6%)

Query: 20 CRFPGAPAHSSIVFSN--ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C  P     +  +          GT   Y C  G+ +       C +   W       C+
Sbjct: 3  CPAPSQLPSAKPINLTDESMFPIGTYLLYECLPGY-IKRQFSITCKQDSTWTSA-EDKCI 60

Query: 78 R 78
          R
Sbjct: 61 R 61

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} Length = 551

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 11  LPEVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWM 69
           LP   +   CR P   +        +     G   T  CE G+ L G S+  C   G W 
Sbjct: 251 LPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWN 310

Query: 70  PEGIPFCVRWCTGLGW 85
           P       R       
Sbjct: 311 PLLAKCVSRLADPEVP 326

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus} Length = 551

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 12/70 (17%)

Query: 20  CRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DKTGQW 68
           C  P    +     S  E    G V TY C         F L+G     C     + G W
Sbjct: 126 CEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVW 185

Query: 69  MPEGIPFCVR 78
                P C+ 
Sbjct: 186 SGP-PPQCIE 194

>2xrb_A Complement regulatory protein CRRY; immune system, immunology; 2.50A {Rattus norvegicus} PDB: 2xrd_A Length = 290

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           P+  E  +C  P       +  +    S   +  + C+ GF + G S   C    +W P+
Sbjct: 225 PQCIELNKCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQ 284

Query: 72  GIPFCV 77
            +P C 
Sbjct: 285 -LPSCA 289

>2xrb_A Complement regulatory protein CRRY; immune system, immunology; 2.50A {Rattus norvegicus} PDB: 2xrd_A Length = 290

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 19 ECRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          +C  P    ++  +      T   GT   Y C  G+ +       C+    W       C
Sbjct: 37 QCPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSP-QDVC 94

Query: 77 VR 78
          +R
Sbjct: 95 IR 96

>2xrb_A Complement regulatory protein CRRY; immune system, immunology; 2.50A {Rattus norvegicus} PDB: 2xrd_A Length = 290

 Score = 41.2 bits (96), Expect = 6e-06
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPF 75
           +C  P  P +  +  +   +  G+  TY C  G+ L+G S  +C   D++  W  E  P 
Sbjct: 98  QCETPLDPQNGIVHVNT-DIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAE-API 155

Query: 76  CVR 78
           C  
Sbjct: 156 CES 158

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A Length = 254

 Score = 48.0 bits (114), Expect = 3e-08
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
           C  P    +  I    +        TYAC +GF ++G     C   +  G+W     P C
Sbjct: 193 CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 251

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A Length = 254

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 18 EECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSR--RVCDKTGQWMPEGIP 74
          ++C  P    ++       T     TV TY CE  F  +   +   +C K  QW      
Sbjct: 2  QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-EE 60

Query: 75 FCVRWC 80
          FC R C
Sbjct: 61 FCNRSC 66

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A Length = 254

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF 75
            C  PG   +  I         G   +++C  G++L G +   C  +G   QW    +P 
Sbjct: 130 SCPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPE 187

Query: 76  CVR 78
           C  
Sbjct: 188 CRE 190

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A Length = 254

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 19  ECRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGI 73
            C  P     +S+     +      GTV  Y C  G+        +  C +  +W    +
Sbjct: 65  SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA-V 123

Query: 74  PFCVR 78
            FC +
Sbjct: 124 EFCKK 128

>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_A Length = 155

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRV------CDKTGQWMPEG 72
          EC     P H  I  S            +C+ G+++L  +  +      C K G W  + 
Sbjct: 7  ECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNK- 65

Query: 73 IPFCVR 78
          IP C  
Sbjct: 66 IPTCKI 71

>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_A Length = 155

 Score = 43.8 bits (103), Expect = 5e-07
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 20  CRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELL---GPSRRVCDKTGQWMPEG-- 72
           CR PG   H  I FS  N   +  +   Y+C+  +  +         C   G WM +   
Sbjct: 74  CRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLG 133

Query: 73  --IPFCVRWC 80
             +P C+  C
Sbjct: 134 RSLPTCLPVC 143

>3iyp_F Complement decay-accelerating factor; virus, receptor, complex, echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo sapiens} Length = 381

 Score = 47.7 bits (113), Expect = 4e-08
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
           C  P    +  I    +        TYAC +GF ++G     C   +  G+W     P C
Sbjct: 225 CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 283

Query: 77  VRWC 80
               
Sbjct: 284 RGKS 287

>3iyp_F Complement decay-accelerating factor; virus, receptor, complex, echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo sapiens} Length = 381

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 17 YEECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSR--RVCDKTGQWMPEGI 73
          +++C  P    ++       T     TV TY CE  F  +   +   +C K  QW     
Sbjct: 33 WQDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-E 91

Query: 74 PFCVRWC 80
           FC R C
Sbjct: 92 EFCNRSC 98

>3iyp_F Complement decay-accelerating factor; virus, receptor, complex, echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo sapiens} Length = 381

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF 75
            C  PG   +  I         G   +++C  G++L G +   C  +G   QW    +P 
Sbjct: 162 SCPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPE 219

Query: 76  CVR 78
           C  
Sbjct: 220 CRE 222

>3iyp_F Complement decay-accelerating factor; virus, receptor, complex, echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo sapiens} Length = 381

 Score = 38.5 bits (89), Expect = 7e-05
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 19  ECRFPGAPAHSSIVF---SNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGI 73
            C  P     +S+     +      GTV  Y C  G+        +  C +  +W    +
Sbjct: 97  SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKW-STAV 155

Query: 74  PFCVR 78
            FC +
Sbjct: 156 EFCKK 160

>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A Length = 277

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           R        S   S++T   GT A Y C  G+  LG    VC K        +  C +
Sbjct: 13 PRRNTEILTGSW--SDQTYPEGTQAIYKCRPGYRSLGNIIMVCRKGEWVALNPLRKCQK 69

>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A Length = 277

 Score = 47.2 bits (112), Expect = 5e-08
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 2/61 (3%)

Query: 19  ECRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
            C  PG     +   +       G  A Y C  G++LLG        T  W  + IP C 
Sbjct: 71  PCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND-IPICE 129

Query: 78  R 78
            
Sbjct: 130 V 130

>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A Length = 277

 Score = 46.5 bits (110), Expect = 8e-08
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 20  CRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
           C    AP +  IV S          G    + C  G+++ G     C   G W  E  P 
Sbjct: 133 CLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE-KPK 191

Query: 76  CVR 78
           CV 
Sbjct: 192 CVE 194

>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A Length = 277

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
           C+ P     S I              Y C  G+E       VC ++G W P  +P C   
Sbjct: 197 CKSPDVINGSPISQKIIY-KENERFQYKCNMGYEYSERGDAVCTESG-WRP--LPSCEEA 252

Query: 80  CTG 82
             G
Sbjct: 253 RGG 255

>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF, virus-receptor complex, antigen, blood group antigen, complement pathway, GPI-anchor; 14.00A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 Length = 316

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 18 EECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLG--PSRRVCDKTGQWMPEGIP 74
          ++C  P    ++       T     TV TY CE  F  +       +C K  QW      
Sbjct: 1  QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-EE 59

Query: 75 FCVR 78
          FC R
Sbjct: 60 FCNR 63

>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR, CCP, immune system; NMR {Rattus norvegicus} Length = 320

 Score = 46.6 bits (110), Expect = 8e-08
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 20  CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
              P    ++ IV  N    S   +  + C+ GF + G S   C    +W P+ +P C +
Sbjct: 199 KCTPPHVENAVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYCRSLNRWEPQ-LPSCFK 257

>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR, CCP, immune system; NMR {Rattus norvegicus} Length = 320

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 19 ECRFPGAPAHSSIVFSNE--TLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          +C  P    ++  +   +  T   GT   Y C  G+ +       C+    W       C
Sbjct: 4  QCPAPPLFPYAKPINPTDESTFPVGTSLKYECRPGY-IKRQFSITCEVNSVWTSP-QDVC 61

Query: 77 VR 78
          +R
Sbjct: 62 IR 63

>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR, CCP, immune system; NMR {Rattus norvegicus} Length = 320

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
           C  P  P +  +   N  +  G+  TY C  G+ L+G S  +C   D++  W  E  P C
Sbjct: 66  CETPLDPQNGIVH-VNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAE-APIC 123

Query: 77  VR 78
             
Sbjct: 124 ES 125

>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR, CCP, immune system; NMR {Rattus norvegicus} Length = 320

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
             F G   +  +         G   T+ C  G++L G S   C   G    W    +P C
Sbjct: 262 GAFLGELPNGHVFVPQNL-QLGAKVTFVCNTGYQLKGNSSSHCVLDGVESIWNSS-VPVC 319

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 45.1 bits (106), Expect = 3e-07
 Identities = 14/66 (21%), Positives = 22/66 (33%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
             +    EC  P    H       +    G V  ++C+ GF ++GP+   C   G     
Sbjct: 543 LPICYERECELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFGLSPDL 602

Query: 72  GIPFCV 77
            I    
Sbjct: 603 PICKEQ 608

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 44.4 bits (104), Expect = 7e-07
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            R        S   S++T   GT A Y C  G+  LG    VC K        +  C +
Sbjct: 7  PPRRNTEILTGSW--SDQTYPEGTQAIYKCRPGYRSLGNVIMVCRKGEWVALNPLRKCQK 64

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 16  EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
           +   C  PG     +   +       G  A Y C  G++LLG        T  W  + IP
Sbjct: 63  QKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTND-IP 121

Query: 75  FCVR 78
            C  
Sbjct: 122 ICEV 125

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 41.3 bits (96), Expect = 7e-06
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 16  EYEECRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           E  +C    AP +  IV S          G    + C  G+++ G     C   G W  E
Sbjct: 124 EVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE 183

Query: 72  GIPFCVRWC 80
             P CV   
Sbjct: 184 -KPKCVEIS 191

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 41.3 bits (96), Expect = 8e-06
 Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
             + E   C       H     S+     G    + C   F ++G     C   G W   
Sbjct: 665 VCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITC-IHGVWTQ- 722

Query: 72  GIPFCVR 78
            +P CV 
Sbjct: 723 -LPQCVA 728

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 20   CRFPGAPAHSSIV-FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C  P    +  I  F     +P +   Y C+  ++L G  R  C + GQW     P C+ 
Sbjct: 1091 CGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQW--SEPPKCLH 1147

Query: 79   WCT 81
             C 
Sbjct: 1148 PCV 1150

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           P   E   C+ P   +H  +   +++   G   TY C  GF + GP+   C         
Sbjct: 905 PPQCEGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCLGEKWS--- 961

Query: 72  GIPFCVR 78
             P C++
Sbjct: 962 HPPSCIK 968

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 2   VNMKCHNLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRV 61
           +N +    V   +++ + C  P    +S  + +      G   +  C+  + +       
Sbjct: 775 INGRWDPEVNCSMAQIQLCPPPPQIPNSHNMTTTLNYRDGEKVSVLCQENYLIQEGEEIT 834

Query: 62  CDKTGQWMPEGIPFCVR 78
           C K G+W         +
Sbjct: 835 C-KDGRWQSI-PLCVEK 849

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 39.3 bits (91), Expect = 4e-05
 Identities = 11/69 (15%), Positives = 21/69 (30%)

Query: 18  EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
              +      +  I  S  T +    A Y C+ G+           + G+      P C+
Sbjct: 429 TCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQPTCI 488

Query: 78  RWCTGLGWE 86
           + C    + 
Sbjct: 489 KSCDIPVFM 497

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 39.0 bits (90), Expect = 6e-05
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 6/64 (9%)

Query: 20   CRFPGAPAHSSIVFSNETL-----SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
                    + +I              G    + C+RG+ L   S  +         E  P
Sbjct: 1150 VISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLE-YP 1208

Query: 75   FCVR 78
             C +
Sbjct: 1209 TCAK 1212

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 38.6 bits (89), Expect = 7e-05
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSN---ETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
           P   E   C  P    H +I  S    E+ + GT  +Y CE GF +   +   C      
Sbjct: 844 PLCVEKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCYMGKWS 903

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 38.2 bits (88), Expect = 8e-05
 Identities = 10/62 (16%), Positives = 14/62 (22%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
              +     +            G     AC  G+ L      V      W P      V+
Sbjct: 369 RKCYFPYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVK 428

Query: 79  WC 80
            C
Sbjct: 429 TC 430

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 3/63 (4%)

Query: 18  EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
           E         + S +             Y C  G+E       VC ++G      +P C 
Sbjct: 189 EISCKSPDVINGSPISQKIIYKENERFQYKCNMGYEYSERGDAVCTESGWR---PLPSCE 245

Query: 78  RWC 80
              
Sbjct: 246 EKS 248

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 13/60 (21%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           +        ++                Y C  G+E    S       G      +P C  
Sbjct: 489 KSCDIPVFMNARTKNDFTWFKLNDTLDYECHDGYESNTGSTTGSIVCGYNGWSDLPICYE 548

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 35.9 bits (82), Expect = 5e-04
 Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 20   CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C    +  ++  +    +    G   TY C   +++ G S   C    +W          
Sbjct: 971  CLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTCI-NSRWTGRPTCRDTS 1029

Query: 79   WCT 81
               
Sbjct: 1030 CVN 1032

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A Length = 1213

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 20  CRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
           C  P    + ++     E      V  Y C   F + GP++  C   G+W    +     
Sbjct: 612 CGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWTTLPVCIVEE 670

>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A Length = 136

 Score = 43.8 bits (103), Expect = 3e-07
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
          C+ P  P +  +    +    G+  TY+C  G  L+G S   C  +G    W  +  P C
Sbjct: 7  CKTPPDPVNGMVHVITDI-QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPIC 64

Query: 77 VR 78
           R
Sbjct: 65 QR 66

>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A Length = 136

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 16  EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DK 64
           +   C  P   A+   + +N E    G+V TY C  G      FEL+G     C    D+
Sbjct: 65  QRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQ 124

Query: 65  TGQWMPEGIPFCV 77
            G W     P C+
Sbjct: 125 VGIWSGP-APQCI 136

>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain, regulator of C activation, C3D, immune system; 1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A 3kzj_A 2xqw_C Length = 129

 Score = 43.4 bits (102), Expect = 4e-07
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 16 EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
          E+ +C  P    +  I        +P +   Y C+  ++L G  R  C + GQW     P
Sbjct: 3  EFGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQWSEP--P 59

Query: 75 FCVRWCT 81
           C+  C 
Sbjct: 60 KCLHPCV 66

>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain, regulator of C activation, C3D, immune system; 1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A 3kzj_A 2xqw_C Length = 129

 Score = 38.1 bits (88), Expect = 5e-05
 Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 5/71 (7%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSP----GTVATYACERGFELLGPSRRVCDKTGQ 67
           P+              ++  +            G    + C+RG+ L   S  +      
Sbjct: 59  PKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWD 118

Query: 68  WMPEGIPFCVR 78
              E  P C +
Sbjct: 119 GKLE-YPTCAK 128

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 376

 Score = 44.5 bits (104), Expect = 5e-07
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
              ++Y  C  P  P     +  +     G   T+AC+  F + G     C     W P 
Sbjct: 64  EYFNKYSSCPEPIVP-GGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPT 122

Query: 72  GIPFCVRWC 80
            +P CV   
Sbjct: 123 RLPTCVSVF 131

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} Length = 376

 Score = 44.2 bits (103), Expect = 8e-07
 Identities = 12/52 (23%), Positives = 21/52 (40%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
          C  P    +  I + +  ++ GTV  Y+C   F L+G    +C    +    
Sbjct: 4  CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGT 55

>3sw0_X H factor 1, complement factor H; innate immune response, sushi domains, cofactor in the inact of C3B, C3B, human plasma, immune system; 1.80A {Homo sapiens} Length = 188

 Score = 44.2 bits (104), Expect = 5e-07
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 19  ECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
           +C  P    +  I        +P +   Y C+  ++L G  R  C + GQW     P C+
Sbjct: 65  KCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITC-RNGQW--SEPPKCL 121

Query: 78  RWCT 81
             C 
Sbjct: 122 HPCV 125

>3sw0_X H factor 1, complement factor H; innate immune response, sushi domains, cofactor in the inact of C3B, C3B, human plasma, immune system; 1.80A {Homo sapiens} Length = 188

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 20 CRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
          C  P    ++ IV    +    G    Y C   +E+ G    +C       P
Sbjct: 5  CVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCLNGNWTEP 56

>3sw0_X H factor 1, complement factor H; innate immune response, sushi domains, cofactor in the inact of C3B, C3B, human plasma, immune system; 1.80A {Homo sapiens} Length = 188

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 6/64 (9%)

Query: 20  CRFPGAPAHSSIVFSN-----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP 74
                   + +I              G    + C+RG+ L   S  +         E  P
Sbjct: 125 VISREIMENYNIALRWTAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCWDGKLE-YP 183

Query: 75  FCVR 78
            C +
Sbjct: 184 TCAK 187

>2uwn_A H factor 1, human complement factor H; alternative splicing, sucrose octasulphate, AGE-related macular degeneration, complement alternate pathway; HET: SCR; 2.35A {Homo sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A Length = 187

 Score = 43.8 bits (103), Expect = 5e-07
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           P V    +C FP    +            G     AC  G+ L      V      W P 
Sbjct: 62  PAVPCLRKCYFP-YLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPT 120

Query: 72  GIPFCVR 78
             P C+R
Sbjct: 121 --PRCIR 125

>2uwn_A H factor 1, human complement factor H; alternative splicing, sucrose octasulphate, AGE-related macular degeneration, complement alternate pathway; HET: SCR; 2.35A {Homo sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A Length = 187

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWM 69
             +      +      +  I  S  T +    A Y C+ G+       S  +      W 
Sbjct: 122 RCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDGWS 181

Query: 70  PEGIPFCV 77
            +  P C+
Sbjct: 182 AQ--PTCI 187

>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 Length = 128

 Score = 42.9 bits (101), Expect = 6e-07
 Identities = 11/61 (18%), Positives = 15/61 (24%), Gaps = 4/61 (6%)

Query: 20 CRFPGAPAHSSIVFSN--ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C+ P     + +           GT   Y C   +     S   C     W       C 
Sbjct: 6  CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFSIT-CLDNLVWSSP-KDVCK 63

Query: 78 R 78
          R
Sbjct: 64 R 64

>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 Length = 128

 Score = 42.1 bits (99), Expect = 1e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPF 75
            C+ P  P +  +    +    G+  TY+C  G  L+G S   C     T  W  +  P 
Sbjct: 66  SCKTPPDPVNGMVHVITDI-QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPI 123

Query: 76  CVR 78
           C R
Sbjct: 124 CQR 126

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 44.0 bits (103), Expect = 8e-07
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 20   CRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
            C FP      S     + +   G   T  CE G+ L G     C    +W P  +  C  
Sbjct: 1868 CSFPLFMNGISKELEMKKVYHYGDYVTLKCEDGYTLEGSPWSQCQADDRWDPP-LAKCTS 1926

Query: 79   WC 80
              
Sbjct: 1927 RA 1928

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           P+     +C  P       +  +    S   V  + C+ GF + GP R  C    +W PE
Sbjct: 189 PQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE 248

Query: 72  GIPFCVRWCTGL 83
            +P C R C   
Sbjct: 249 -LPSCSRVCQPP 259

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 12   PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
            P      +C  P       +  +    S   +  + C+ GF ++G     C   G+W P+
Sbjct: 1542 PRCISTNKCTAPEVENAIRVPGNRSFFSLTEIIRFRCQPGFVMVGSHTVQCQTNGRWGPK 1601

Query: 72   GIPFCVRWCTGLG 84
             +P C R C    
Sbjct: 1602 -LPHCSRVCQPPP 1613

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 42.1 bits (98), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           P+     +C  P       +  +    S   V  + C+ GF + GP R  C    +W PE
Sbjct: 639 PQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE 698

Query: 72  GIPFCVRWC 80
            +P C R C
Sbjct: 699 -LPSCSRVC 706

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 41.7 bits (97), Expect = 5e-06
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 12   PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
            P+     +C  P       +  +    S   V  + C+ GF + GP R  C    +W PE
Sbjct: 1089 PQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPE 1148

Query: 72   GIPFCVRWC 80
             +P C R C
Sbjct: 1149 -LPSCSRVC 1156

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 40.9 bits (95), Expect = 9e-06
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 20   CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
               P        +   +  SPG    Y+CE  ++L G +   C   G W PE  P C  
Sbjct: 1610 QPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPE-APRCTV 1667

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
              P            +  SPG    Y+CE G++L G +   C   G W P   P C   
Sbjct: 707 QPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPA-APTCEVK 765

Query: 80  C 80
            
Sbjct: 766 S 766

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 13   EVSEYEECRFPGAPAHSSIVFSNETL-SPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
            E+S    C  P    +   +  + +L  PG   +Y C+ G+ L+G     C   G W   
Sbjct: 1800 ELSVPAACPHPPKIQNGHYIGGHVSLYLPGMTISYICDPGYLLVGKGFIFCTDQGIWSQL 1859

Query: 72   GIPFCVR 78
               +C  
Sbjct: 1860 -DHYCKE 1865

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
           CR P  P +  +    + +  G+   Y+C +G+ L+G S   C  +G  
Sbjct: 63  CRNPPDPVNGMVH-VIKGIQFGSQIKYSCTKGYRLIGSSSATCIISGDT 110

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 13/62 (20%), Positives = 17/62 (27%), Gaps = 4/62 (6%)

Query: 19 ECRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          +C  P     +             GT   Y C  G+    P   +C K   W       C
Sbjct: 1  QCNAPEWLPFARPTNLTDEFEFPIGTYLNYECRPGYS-GRPFSIICLKNSVWTGA-KDRC 58

Query: 77 VR 78
           R
Sbjct: 59 RR 60

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 12   PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
             +    + C  P  P +  +  + +T   G+   Y+C  GF L+G     C  +G  +  
Sbjct: 1408 EDNCRRKSCGPPPEPFNGMVHINTDT-QFGSTVNYSCNEGFRLIGSPSTTCLVSGNNVTW 1466

Query: 72   GIPFCV 77
                 +
Sbjct: 1467 DKKAPI 1472

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
              P            +  SPG    Y+CE G++L G +   C   G W P   P C   
Sbjct: 257 QPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGAASMRCTPQGDWSPA-APTCEVK 315

Query: 80  C 80
            
Sbjct: 316 S 316

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 38.2 bits (88), Expect = 9e-05
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 20   CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR 78
               P            +  SPG    Y+CE G++L G +   C   G W PE  P C  
Sbjct: 1157 QPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPE-APRCAV 1214

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 35.9 bits (82), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 20  CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM--PEGIPFCV 77
           C+ P  P +   V     +  G+   Y+C  G  L+G S   C  +G         P C 
Sbjct: 513 CKTPPDPVNGM-VHVITDIQVGSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQ 571

Query: 78  RWCTG 82
           R   G
Sbjct: 572 RIPCG 576

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens} Length = 1931

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 13/58 (22%), Positives = 18/58 (31%)

Query: 11  LPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
                E + C        +  V     L  G    + C+ GF+L G S   C   G  
Sbjct: 308 AAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVLAGME 365

>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens} Length = 133

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 19  ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQW 68
            CR PG   +  +    +  S G+   ++C  GF L+G +   C+   + 
Sbjct: 65  RCRHPGELRNGQVEIKTDL-SFGSQIEFSCSEGFFLIGSTTSRCEVQDRG 113

>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens} Length = 133

 Score = 42.2 bits (99), Expect = 1e-06
 Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 20 CRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELLGPSR-RVCDKTGQWMPEGIPF 75
          C  P   + ++ +    +      GT   Y C  G+     ++   C+  G+W+     F
Sbjct: 3  CGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVYN--TF 60

Query: 76 CVR 78
          C+ 
Sbjct: 61 CIY 63

>2qy0_A Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} Length = 159

 Score = 41.7 bits (97), Expect = 3e-06
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 19 ECRFPGAPAHSSIVF-SNETLSPGTVATYACERGFELLGPSR------RVCDKTGQWMPE 71
           C  P      +I+                C++G++L+  ++       VC   G W   
Sbjct: 4  ACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA 63

Query: 72 GIPFCVRWCTG 82
           +P C     G
Sbjct: 64 -MPRCKIKDCG 73

>2yby_A Complement factor H; immune system, complement regulation, innate immunity, infec; 1.58A {Mus musculus} Length = 124

 Score = 39.1 bits (91), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL-GPSRRVCDKTGQWMP 70
           PEV    +C F     +    +  +    G      C  G+ L  G     C + G W P
Sbjct: 61  PEVPCVRKCVFHY-VENGDSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENG-WSP 118

Query: 71  EGIPFCVR 78
              P C+R
Sbjct: 119 P--PKCIR 124

>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 86

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 20 CRFPGAPAHSSIVF--SNETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEG--- 72
          C  P       + +       +   V  Y+CE  F  +     + VCD  G W       
Sbjct: 8  CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWTSSKGEK 67

Query: 73 -IPFCVRWC 80
           +P C   C
Sbjct: 68 SLPVCEPVC 76

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 12  PEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE 71
           PE+     C  P  P +  I    +    G     +C  GFE +G     C   G W   
Sbjct: 615 PEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQG 674

Query: 72  GIPFCVRWC 80
               C R  
Sbjct: 675 D-VECQRTE 682

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
2ehf_A	73	CUB and sushi domain-containing protein 1; CUB and	99.84
1gkn_A	128	Complement receptor type 1; module, SCR, structure	99.8
2yra_A	74	Seizure 6-like protein isoform 3; disulfide bond,	99.8
1h03_P	125	Complement decay-accelerating factor; immune syste	99.79
3gov_A	155	MAsp-1; complement, serine protease, beta barrel,	99.78
1gkg_A	136	Complement receptor type 1; module, SCR, structure	99.75
1srz_A	68	Gamma-aminobutyric acid type B receptor, subunit 1	99.74
2qy0_A	159	Complement C1R subcomponent; serine protease, beta	99.74
2a55_A	133	C4B-binding protein; complement, SCR, CCP module,	99.73
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	99.73
3iyp_F	381	Complement decay-accelerating factor; virus, recep	99.72
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	99.72
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	99.71
3tvj_A	86	Mannan-binding lectin serine protease 2 A chain; i	99.71
1ly2_A	130	CD21, complement receptor type 2; epstein BARR vir	99.7
2wii_C	277	H factor 1, complement factor H; immune system, su	99.69
3erb_A	223	Complement C2; C3/C5 convertase, short consensus r	99.69
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	99.69
3sw0_X	188	H factor 1, complement factor H; innate immune res	99.69
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.68
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	99.68
1ok3_A	254	CD55, CR, DAF, complement decay-accelerating facto	99.68
3o8e_B	252	Membrane cofactor protein; short consensus repeat,	99.67
2xrb_A	290	Complement regulatory protein CRRY; immune system,	99.67
1ly2_A	130	CD21, complement receptor type 2; epstein BARR vir	99.66
1qub_A	319	Protein (human BETA2-glycoprotein I); short consen	99.66
3gov_A	155	MAsp-1; complement, serine protease, beta barrel,	99.65
2c8i_E	316	CD55, complement decay-accelerating factor; picorn	99.65
2wii_C	277	H factor 1, complement factor H; immune system, su	99.65
1rid_A	244	Complement control protein; regulation, SCR, immun	99.63
4ayi_A	125	H factor 1, complement factor H; immune system, an	99.63
1gkg_A	136	Complement receptor type 1; module, SCR, structure	99.62
3iyp_F	381	Complement decay-accelerating factor; virus, recep	99.62
1ntj_A	320	Complement receptor related protein; immunology, g	99.62
3r62_A	129	H factor 1, complement factor H; immunity, repeati	99.62
1rid_A	244	Complement control protein; regulation, SCR, immun	99.61
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.61
2xrb_A	290	Complement regulatory protein CRRY; immune system,	99.61
1gkn_A	128	Complement receptor type 1; module, SCR, structure	99.61
1h03_P	125	Complement decay-accelerating factor; immune syste	99.6
2yby_A	124	Complement factor H; immune system, complement reg	99.6
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.58
2qy0_A	159	Complement C1R subcomponent; serine protease, beta	99.58
1ntj_A	320	Complement receptor related protein; immunology, g	99.58
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.57
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	99.56
2uwn_A	187	H factor 1, human complement factor H; alternative	99.56
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.56
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.55
3r62_A	129	H factor 1, complement factor H; immunity, repeati	99.55
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	99.54
2uwn_A	187	H factor 1, human complement factor H; alternative	99.53
3sw0_X	188	H factor 1, complement factor H; innate immune res	99.53
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	99.52
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.51
2a55_A	133	C4B-binding protein; complement, SCR, CCP module,	99.49
2gsx_A	951	Complement receptor type 2; SCR domain, CCP domain	99.47
1haq_A	1213	Complement factor H; immunology, glycoprotein, com	99.44
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	99.44
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	99.43
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.42
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	99.41
2q7z_A	1931	Complement receptor type 1; SCR domain, blood grou	99.4
2yby_A	124	Complement factor H; immune system, complement reg	99.36
2b5i_D	217	Interleukin-2 receptor alpha chain; four-helix bun	99.31
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	99.3
4ayi_A	125	H factor 1, complement factor H; immune system, an	99.2
2psm_F	78	Interleukin-15 receptor alpha chain; cytokine, gly	99.17
1gpz_A	399	Complement C1R component; hydrolase, activation, i	99.1
2z3q_B	107	Interleukin-15 receptor alpha chain; protein-prote	98.81
1elv_A	333	Complement C1S component; trypsin-like serin prote	98.76
2b5i_D	217	Interleukin-2 receptor alpha chain; four-helix bun	98.7
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	98.22
1md8_A	329	C1R complement serine protease; innate immunity, a	98.0
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	95.61
2yra_A	74	Seizure 6-like protein isoform 3; disulfide bond,	94.55
3n7s_A	115	Calcitonin gene-related peptide type 1 receptor; G	90.79
1u34_A	119	CRFR2B, corticotropin releasing factor receptor 2;	88.22
4ers_A	96	GL-R, glucagon receptor; class-B GPCR, FAB, glycos	88.1
2l27_A	84	Seven transmembrane helix receptor; CRF, ECD1, fam	87.63
3c5t_A	122	Glucagon-like peptide 1 receptor; ligand-bound G p	86.67
2jod_A	106	Pituitary adenylate cyclase-activating polypeptide	86.37
2x57_A	116	Vasoactive intestinal polypeptide receptor 2; G-pr	86.17
2qkh_A	135	Glucose-dependent insulinotropic polypeptide recep	85.7
2xdg_A	92	Growth hormone-releasing hormone receptor; signali	80.62

>2ehf_A CUB and sushi domain-containing protein 1; CUB and sushi multiple domains protein 1, CSMD1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=98.19  Aligned_cols=69  Identities=26%  Similarity=0.434  Sum_probs=62.1

Q ss_pred             eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeecc
Q psy6641           9 LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC   80 (87)
Q Consensus         9 ~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~~   80 (87)
                      .|+...|  +.+.|+.|+.+.||.+..  ..|.+|++|+|+|++||.|.|+..++|+++|+|+.+ .|.|++.+
T Consensus         1 Gws~~~p~C~~~~C~~p~~p~nG~~~~--~~~~~g~~v~f~C~~Gy~L~G~~~~~C~~~g~Ws~~-~P~C~~~c   71 (73)
T 2ehf_A            1 GSSGSSGEIEKGGCGDPGIPAYGKRTG--SSFLHGDTLTFECPAAFELVGERVITCQQNNQWSGN-KPSCSGPS   71 (73)
T ss_dssp             CCCCCCCCCCCCCSCCCCCCSSSEEEC--SCCCTTCEEEEECCSSCCBCSCSEEEBCSSSSBSSC-CCCBCCCC
T ss_pred             CCCCCCCeEeeeECcCCCCCCCCEEeC--CcccCCCEEEEEcCCCCEEeCCCeEEECCCCeECCC-CCeEeccc
Confidence            3888877  688999999999999873  578899999999999999999999999999999997 99998765

>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1

Probab=99.80  E-value=1.5e-19  Score=102.78  Aligned_cols=76  Identities=24%  Similarity=0.557  Sum_probs=67.4

Q ss_pred             eeeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCc---cCCCCCC
Q psy6641           2 VNMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQ---WMPEGIP   74 (87)
Q Consensus         2 ~~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~---Ws~~~~p   74 (87)
                      ..++|+  |+|+...|  +.+.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|+   |+.. .|
T Consensus        45 ~~~~C~~~g~Ws~~~p~C~~~~C~~p~~~~nG~~~~~-~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~~~~Ws~~-~P  122 (128)
T 1gkn_A           45 FSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVI-TDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PP  122 (128)
T ss_dssp             EEEEBCSSSCBCCCCSCCEECBCCCCCCCTTEEEEES-SCCBTTCEEEEEECTTEECCSCSEEEEEECSSSEEESSC-CC
T ss_pred             CceEECCCCcCCCCCCeEcceECcCCCCCCCcEEEec-cCCccCCEEEEEeCCCCEEccCCceEEcCCCCcCCccCC-CC
Confidence            367998  89998777  4678999999999999765 46889999999999999999999999999999   9997 99


Q ss_pred             eEeec
Q psy6641          75 FCVRW   79 (87)
Q Consensus        75 ~C~~~   79 (87)
                      .|++.
T Consensus       123 ~C~~i  127 (128)
T 1gkn_A          123 ICQRI  127 (128)
T ss_dssp             CCEEC
T ss_pred             EeeEC
Confidence            99864

>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain, SCR, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=2.5e-19  Score=93.35  Aligned_cols=63  Identities=22%  Similarity=0.474  Sum_probs=57.4

Q ss_pred             CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeec
Q psy6641          16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      ..+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.+|+|+.. .|.|++.
T Consensus         4 ~~~~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~~g~Ws~~-~P~C~~v   66 (74)
T 2yra_A            4 GSSGCSDLPEIQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSD-PPFCEKT   66 (74)
T ss_dssp             CCCCCCCCCCCTTEEECCSSSSCCTTCEEEEEECTTEEEESCSEEEBCTTSCBSSC-CCEEEEC
T ss_pred             cCCcCcCCCCCCCeEEeccCCCccCCCEEEEECCCCCEECCCCceEECCCCEECCC-CCEEeec
Confidence            35689999999999998766679999999999999999999999999999999997 9999974

>1h03_P Complement decay-accelerating factor; immune system protein, enteroviral receptor, bacterial receptor, ligand for CD97, complement pathway; 1.7A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P 1h04_P 2qzd_A

Probab=99.79  E-value=2.5e-19  Score=101.39  Aligned_cols=75  Identities=21%  Similarity=0.389  Sum_probs=66.2

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCC---CCccCCCC
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDK---TGQWMPEG   72 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~---~g~Ws~~~   72 (87)
                      .++|+  |   .|+...|  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.   +|+|+.+ 
T Consensus        41 ~~~C~~~g~~~~Ws~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~~~~G~Ws~~-  119 (125)
T 1h03_P           41 SSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-  119 (125)
T ss_dssp             EEEEEEETTEEEESSCCCEEEECBCCCCCCCTTEEETTCCSCCBTTCEEEEEECTTCEEESCSEEEEEEETTEEEESSC-
T ss_pred             eeEEcCCCCCCEeCCCCCcCCCCcCCCCCCCCCCEEeCCcCceecCCEEEEEECCCCEECCCCeeEEecCCCCCEECCC-
Confidence            57898  6   8998888  5778999999999998766567899999999999999999999999984   6999997 


Q ss_pred             CCeEee
Q psy6641          73 IPFCVR   78 (87)
Q Consensus        73 ~p~C~~   78 (87)
                      +|.|++
T Consensus       120 ~P~C~~  125 (125)
T 1h03_P          120 PPECRG  125 (125)
T ss_dssp             CCEEEC
T ss_pred             CceecC
Confidence            999974

>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_A

Probab=99.78  E-value=1.1e-18  Score=101.87  Aligned_cols=78  Identities=26%  Similarity=0.636  Sum_probs=68.0

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCC-EEc--CCCceeeCCCCccCC---
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFS--NETLSPGTVATYACERGF-ELL--GPSRRVCDKTGQWMP---   70 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy-~l~--G~~~~~C~~~g~Ws~---   70 (87)
                      .++|+  |+|+...|  +.+.|+.|+.+.||.+...  ...|.+|++|+|+|++|| .|.  |+..++|+++|+|+.   
T Consensus        53 ~~~C~~~G~Ws~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~~~g~~v~y~C~~Gy~~l~~~G~~~~~C~~~G~Ws~~~~  132 (155)
T 3gov_A           53 QIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVL  132 (155)
T ss_dssp             EEEBCTTSCBSSCCCEEEECBCCSCCCCTTEEEEESSTTCCCBTTCEEEEEECTTTEEECTTCCCEEEECTTSCEEBTTT
T ss_pred             EEEECCCCeEcCCCCeeeEccCCCCCCCcCceEEecCCCCccccCCEEEEEeCCChhhhccCCCceEEECCCCeECCCcC
Confidence            68999  89998878  5678999999999999753  467889999999999997 888  889999999999997   


Q ss_pred             --CCCCeEeeccc
Q psy6641          71 --EGIPFCVRWCT   81 (87)
Q Consensus        71 --~~~p~C~~~~~   81 (87)
                        . .|.|++.|.
T Consensus       133 ~~~-~P~C~~vC~  144 (155)
T 3gov_A          133 GRS-LPTCLPVCG  144 (155)
T ss_dssp             BTS-CCCEEECCS
T ss_pred             CCC-CCcCCCccC
Confidence              6 899998643

>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A

Probab=99.75  E-value=2.6e-18  Score=98.49  Aligned_cols=74  Identities=27%  Similarity=0.588  Sum_probs=65.6

Q ss_pred             eeEEc--ce---ecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCC------CEEcCCCceeeCCC---
Q psy6641           3 NMKCH--NL---VLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERG------FELLGPSRRVCDKT---   65 (87)
Q Consensus         3 ~~~C~--g~---W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~g------y~l~G~~~~~C~~~---   65 (87)
                      .++|+  |+   |+...|  +.+.|+.|+.+.||.+... ...|.+|++|+|+|++|      |.|.|+..++|+.+   
T Consensus        45 ~~~C~~~G~~~~Ws~~~P~C~~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~Gy~~~~~y~l~G~~~~~C~~~~~~  124 (136)
T 1gkg_A           45 SAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQ  124 (136)
T ss_dssp             EEEEEECSSSEEESSCCCCEEECCCCCCCCCTTCCBCSSCSSCCCSSCEEEBCCCCTTSCCSSCCEESCCEEECCCSSSS
T ss_pred             ceEEeCCCccccccCCCCCEEeecCCCCCCCCCCeEEcCCCCccccCCEEEEEeCCCCCccceEEEeCCCeeEECCCCCC
Confidence            57999  77   998877  5678999999999998764 36788999999999999      99999999999998   


Q ss_pred             -CccCCCCCCeEe
Q psy6641          66 -GQWMPEGIPFCV   77 (87)
Q Consensus        66 -g~Ws~~~~p~C~   77 (87)
                       |+|+.+ +|.|+
T Consensus       125 ~G~Ws~~-~P~C~  136 (136)
T 1gkg_A          125 VGIWSGP-APQCI  136 (136)
T ss_dssp             SCCCSCC-CCEEC
T ss_pred             CCEECCC-CcccC
Confidence             999997 99995

>1srz_A Gamma-aminobutyric acid type B receptor, subunit 1; GABA(B) receptor, CIS-trans isomerization, CCP module, sushi domain; NMR {Rattus norvegicus} SCOP: g.18.1.1 PDB: 1ss2_A

Probab=99.74  E-value=1.8e-18  Score=88.75  Aligned_cols=60  Identities=25%  Similarity=0.558  Sum_probs=52.2

Q ss_pred             cccCC-CCCCCCCeEEEec--CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          17 YEECR-FPGAPAHSSIVFS--NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        17 ~~~C~-~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .+.|+ +++.+.||.+...  ...|.+|++|+|+|++||.|.|+..++|+ +|+|+.+ .|.|+.
T Consensus         5 ~~~Cp~~~~~~~nG~~~~~~~~~~y~~g~~v~f~C~~Gy~L~G~~~~~C~-~g~Ws~~-~P~C~~   67 (68)
T 1srz_A            5 VRICSKSYLTLENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSSRSVCS-QGQWSTP-KPHCQV   67 (68)
T ss_dssp             SSSCCGGGGEETTEEEECCCCSCSTTTTCEEEEEECTTEEECSCCEEEEE-TTEESSC-CCCEEE
T ss_pred             eeECCCCCCCCCCCEEEecCCCCceeCCCEEEEECCCCCEEeCCCcCEEC-CCEEeCC-CCEeeE
Confidence            35795 5677899999864  34588999999999999999999999998 9999998 999985

>2qy0_A Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens}

Probab=99.74  E-value=1.1e-17  Score=98.02  Aligned_cols=81  Identities=17%  Similarity=0.416  Sum_probs=66.4

Q ss_pred             eeeEEc--ceecCCCC--CcccCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCCEEc----CC-----CceeeCCCC
Q psy6641           2 VNMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELL----GP-----SRRVCDKTG   66 (87)
Q Consensus         2 ~~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy~l~----G~-----~~~~C~~~g   66 (87)
                      ..++|+  |+|+...|  +.+.|+.|+.+.||.+...  ...|.+|++|+|+|++||.|.    |+     ..++|+++|
T Consensus        50 ~~~~C~~~G~Ws~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~~~g~~v~y~C~~Gy~~~~~~~G~~~~g~~~~~C~~~G  129 (159)
T 2qy0_A           50 FTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQG  129 (159)
T ss_dssp             CEEEBCTTSCBSSCCCEEEECBCCSCCCCTTEEEEESSSTTCCBTTCEEEEEECTTTEEECCC---CCSSTTEEEECTTS
T ss_pred             eEEECCCCCcCcCCCCccccccCCCCCCCCCCeeEeccCCCCcccCCEEEEECCCcceecccccCccccCCccEEECCCc
Confidence            368998  99998877  4679999999999999875  367889999999999999876    54     789999999


Q ss_pred             ccCCC----CCCeEeecccc
Q psy6641          67 QWMPE----GIPFCVRWCTG   82 (87)
Q Consensus        67 ~Ws~~----~~p~C~~~~~~   82 (87)
                      +|+.+    ..|.|++.|..
T Consensus       130 ~Ws~~~~~~~~P~C~~~C~~  149 (159)
T 2qy0_A          130 IWKNEQKGEKIPRCLPVCGK  149 (159)
T ss_dssp             SEEBTTTBTSCCCEEECCSC
T ss_pred             cCCCCCCCccCCceeCCCCC
Confidence            99972    17999987543

>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}

Probab=99.73  E-value=9e-19  Score=100.27  Aligned_cols=73  Identities=25%  Similarity=0.612  Sum_probs=64.7

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~   75 (87)
                      .++|+  |+|+. .|  +.+.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|   +|+.+ +|.
T Consensus        46 ~~~C~~~G~Ws~-~p~C~~~~C~~p~~~~nG~~~~~-~~~~~g~~v~~~C~~Gy~L~G~~~~~C~~~G~~~~Ws~~-~p~  122 (133)
T 2a55_A           46 TLTCNSDGEWVY-NTFCIYKRCRHPGELRNGQVEIK-TDLSFGSQIEFSCSEGFFLIGSTTSRCEVQDRGVGWSHP-LPQ  122 (133)
T ss_dssp             CCEECSSSSEEC-CCCSEECBCCCCCCCTTBCCCCC-STTBSSCBCCCCBCTTCBCCSCSCCBCCCCSSSCCCSCC-CCC
T ss_pred             EEEECCCCeECC-CCcCccCCCcCCCccCCceEEcC-CCCcCCCEEEEEcCCCCEEcCCCeeEecCCCCCCEeCCC-Ccc
Confidence            57999  89999 66  4578999999999988753 5688999999999999999999999999999   99998 999


Q ss_pred             Eee
Q psy6641          76 CVR   78 (87)
Q Consensus        76 C~~   78 (87)
                      |..
T Consensus       123 C~~  125 (133)
T 2a55_A          123 CEI  125 (133)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            874

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens}

Probab=99.73  E-value=1.2e-17  Score=102.50  Aligned_cols=75  Identities=21%  Similarity=0.381  Sum_probs=67.1

Q ss_pred             eeEEc--ceecCC-------CC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCC
Q psy6641           3 NMKCH--NLVLPE-------VS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPE   71 (87)
Q Consensus         3 ~~~C~--g~W~~~-------~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~   71 (87)
                      .++|+  |+|+..       .|  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.+|+|+..
T Consensus        41 ~~~C~~~G~Ws~~~~~~~~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~Ws~~  120 (223)
T 3erb_A           41 SRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRGSPVRQCRPNGMWDGE  120 (223)
T ss_dssp             EEEECTTSCEECC-------CCEEEECEEECCSCCTTEEEESCCSEEETTCEEEEEECTTCEEESCSEEEBCTTSCBSSC
T ss_pred             eeEECCCCeECCCccCCCCCCCeEeeeECcCCCCCCCCEEecCCCCccCCCEEEEEeCCCCEEcCCCceEECCCCeECCC
Confidence            47898  899984       55  56789999999999998766778999999999999999999999999999999997


Q ss_pred             CCCeEee
Q psy6641          72 GIPFCVR   78 (87)
Q Consensus        72 ~~p~C~~   78 (87)
                       .|.|++
T Consensus       121 -~P~C~~  126 (223)
T 3erb_A          121 -TAVCDN  126 (223)
T ss_dssp             -CCEEEC
T ss_pred             -CCEEEe
Confidence             999996

>3iyp_F Complement decay-accelerating factor; virus, receptor, complex, echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo sapiens}

Probab=99.72  E-value=2.3e-17  Score=108.07  Aligned_cols=78  Identities=21%  Similarity=0.363  Sum_probs=67.6

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeC---CCCccCCCC
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD---KTGQWMPEG   72 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~---~~g~Ws~~~   72 (87)
                      .++|.  |   .|+...|  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+   ++|+|+++ 
T Consensus       201 ~~~C~~~G~~~~Ws~~~P~C~~v~C~~p~~~~nG~~~~~~~~y~~g~~v~y~C~~Gy~L~G~~~~~C~~~~~~G~Ws~~-  279 (381)
T 3iyp_F          201 SSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-  279 (381)
T ss_dssp             EEEEEEETTEEEESSCCCEEEECBCCCCCCCTTEEEETCCSCCBTTCEEEEEECTTCEEESCSEEEEECTTSSCEESSC-
T ss_pred             ceEEecCCCcceEcCCCCeeeeeecCCCCCCCCCeEecCCCCeecCCEEEEEeCCCCEeCCCCcEEecccCCCCEEcCC-
Confidence            57898  6   7998888  577899999999999987767799999999999999999999999998   47999997 


Q ss_pred             CCeEeeccc
Q psy6641          73 IPFCVRWCT   81 (87)
Q Consensus        73 ~p~C~~~~~   81 (87)
                      .|.|++...
T Consensus       280 ~P~C~~~~~  288 (381)
T 3iyp_F          280 PPECRGKSL  288 (381)
T ss_dssp             CCEEEC---
T ss_pred             CCeEeCCCC
Confidence            999998653

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*

Probab=99.72  E-value=2.1e-17  Score=102.88  Aligned_cols=76  Identities=25%  Similarity=0.532  Sum_probs=67.8

Q ss_pred             eeeEEc--ceecC-CCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCC
Q psy6641           2 VNMKCH--NLVLP-EVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGI   73 (87)
Q Consensus         2 ~~~~C~--g~W~~-~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~   73 (87)
                      ..++|+  |+|++ ..+  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.+|   +|+.. .
T Consensus        42 ~~~~C~~~g~Ws~~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~g~~~~~~C~~Gy~l~G~~~~~C~~~G~~~~Ws~~-~  120 (252)
T 3o8e_B           42 THTICDRNHTWLPVSDDACYRETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGK-P  120 (252)
T ss_dssp             CEEEBCTTSSBCCCCSTTEEECBCCCCCCCTTEEEEETTSSSBTTCEEEEEECTTEEEESCSEEEEEESSSCEEESSC-C
T ss_pred             CeEEECCCCcCCCCCCCceeeeECcCCCCCCCcEEeecCCCccCCCEEEEECCCCCeECCCCEEEEeCCCCCCeeCCC-C
Confidence            358998  89998 466  568999999999999988767799999999999999999999999999888   89997 9


Q ss_pred             CeEee
Q psy6641          74 PFCVR   78 (87)
Q Consensus        74 p~C~~   78 (87)
                      |.|++
T Consensus       121 P~C~~  125 (252)
T 3o8e_B          121 PICEK  125 (252)
T ss_dssp             CEEEE
T ss_pred             CeEee
Confidence            99987

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A

Probab=99.71  E-value=1.5e-17  Score=103.66  Aligned_cols=75  Identities=21%  Similarity=0.389  Sum_probs=66.2

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCC---CCccCCCC
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDK---TGQWMPEG   72 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~---~g~Ws~~~   72 (87)
                      .++|.  |   +|+...|  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.   +|+|+.+ 
T Consensus       169 ~~~C~~~G~~~~Ws~~~P~C~~v~C~~p~~~~nG~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~~~~G~Ws~~-  247 (254)
T 1ok3_A          169 SSFCLISGSSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-  247 (254)
T ss_dssp             EEEEEEETTEEEESSCCCEEEECBCCCCCCCTTEEETTCCSCCBTTCEEEEEECTTCEEEEESEEEEEEETTEEEESSC-
T ss_pred             ceEEEeCCCcccccCCCCccccccCCCCCCCCCceEecCCCcccCCCEEEEECCCCCeEcCCCceEEeccCCCCEECCC-
Confidence            57898  6   8998888  5679999999999998765567999999999999999999999999984   7999997 


Q ss_pred             CCeEee
Q psy6641          73 IPFCVR   78 (87)
Q Consensus        73 ~p~C~~   78 (87)
                      +|.|++
T Consensus       248 ~P~C~~  253 (254)
T 1ok3_A          248 PPECRG  253 (254)
T ss_dssp             CCEEEC
T ss_pred             CCCccc
Confidence            999974

>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens}

Probab=99.71  E-value=6.5e-17  Score=86.36  Aligned_cols=65  Identities=22%  Similarity=0.532  Sum_probs=56.3

Q ss_pred             CcccCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCC-CEEcCC-CceeeCCCCccC-----CCCCCeEeeccc
Q psy6641          16 EYEECRFPGAPAHSSIVFS--NETLSPGTVATYACERG-FELLGP-SRRVCDKTGQWM-----PEGIPFCVRWCT   81 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~g-y~l~G~-~~~~C~~~g~Ws-----~~~~p~C~~~~~   81 (87)
                      +.+.|+.|+.+.||.+...  ...|.++++|+|+|++| |.|.|+ ..++|+++|+|+     .. +|.|.+.+.
T Consensus         4 ~~v~C~~P~~~~nG~~~~~~~~~~~~~gs~v~y~C~~g~y~l~g~~~~~~C~~~G~Ws~~~~~~~-~P~C~~vCg   77 (86)
T 3tvj_A            4 TIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCDADGFWTSSKGEKS-LPVCEPVCG   77 (86)
T ss_dssp             CCCBCCSCCCCTTEEEEESSSTTCCBTTCEEEEEECTTTEEECSSCCEEEECTTSSEEETTSCCS-CCCEEECCC
T ss_pred             eeeeCCCCCCCCCeEEEeccCCCcccCCCEEEEEcCCCceeccCCCCEEEECCCCCCCcCCCCCC-CCeeECcCC
Confidence            4678999999999998753  35789999999999995 789998 899999999999     66 999998653

>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of comple activation, short consensus repeat, viral receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C

Probab=99.70  E-value=6.9e-17  Score=91.72  Aligned_cols=76  Identities=22%  Similarity=0.476  Sum_probs=62.1

Q ss_pred             eeEEc------ceecCCCC--Cc----ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCC
Q psy6641           3 NMKCH------NLVLPEVS--EY----EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP   70 (87)
Q Consensus         3 ~~~C~------g~W~~~~~--~~----~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~   70 (87)
                      .++|+      |+|+...|  +.    +.|+.| .+.||.+......|.+|++|+|+|++||.|.|+..++|+++|+|+.
T Consensus        43 ~~~C~~~~~~~g~Ws~~~P~C~~~~~~~~C~~p-~~~~g~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~Ws~  121 (130)
T 1ly2_A           43 SLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEP-IVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP  121 (130)
T ss_dssp             EEEEECSSSSSCEESSCCCEEEECCTTCEECCC-CCTTEEEEECCSSEETTCEEEEEECTTEEEESCSEEEECTTSSEES
T ss_pred             eeEEeCCCCCCCeECCCCCeeEcccCccCCcCC-CCCCCeEecCcccccCCCEEEEEeCCCCEEeCCCceEECCCCEECC
Confidence            47884      79998877  33    789988 5667877654457899999999999999999999999999999997


Q ss_pred             CCCCeEeec
Q psy6641          71 EGIPFCVRW   79 (87)
Q Consensus        71 ~~~p~C~~~   79 (87)
                      ...|.|+++
T Consensus       122 ~~~P~C~~i  130 (130)
T 1ly2_A          122 TRLPTCVSI  130 (130)
T ss_dssp             SCCCEEEEC
T ss_pred             CCCccceEC
Confidence            217999863

>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A

Probab=99.69  E-value=3e-17  Score=103.54  Aligned_cols=75  Identities=24%  Similarity=0.525  Sum_probs=66.2

Q ss_pred             eEEc-ceecCCCC--CcccCCCCCCCCCeEEEe----cCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           4 MKCH-NLVLPEVS--EYEECRFPGAPAHSSIVF----SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         4 ~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~----~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      ++|+ +.|+...|  +.+.|+.|+.+.||.+..    ....|.+|++|+|+|++||.|.|+..++|+.+|+|+.. .|.|
T Consensus       114 r~C~~~gWs~~~P~C~~~~C~~p~~~~nG~~~~~~~~~~~~~~~g~~v~y~C~~Gy~L~G~~~~~C~~~G~Ws~~-~P~C  192 (277)
T 2wii_C          114 RECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE-KPKC  192 (277)
T ss_dssp             EEBCSSSBCSCCCEEEECEECCCCCCTTEECCSSSSCTTCCEETTBEEECEECTTEEEESCSEEEBCTTSSBSSC-CCEE
T ss_pred             eEeCCCCcCCCCCcccceeCCCCCcccCCeEEecccccCCcccCCCEEEEEcCCCccCcCCCCCEECCCCeECCC-CCee
Confidence            3899 44998888  567899999999999876    34678999999999999999999999999999999987 9999


Q ss_pred             eec
Q psy6641          77 VRW   79 (87)
Q Consensus        77 ~~~   79 (87)
                      ++.
T Consensus       193 ~~v  195 (277)
T 2wii_C          193 VEI  195 (277)
T ss_dssp             EEC
T ss_pred             eee
Confidence            874

>3erb_A Complement C2; C3/C5 convertase, short consensus repeat(SCR), sushi domain, human complement system, complement second component C2; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.7e-16  Score=97.36  Aligned_cols=74  Identities=23%  Similarity=0.485  Sum_probs=62.6

Q ss_pred             eeEEc--ceecCCCC--Cc--ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           3 NMKCH--NLVLPEVS--EY--EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~--~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      .++|.  |+|+...|  +.  +.|+.|.. .+|.+.. ...|.+|++|+|+|++||.|.|+..++|+++|+|+.. .|.|
T Consensus       108 ~~~C~~~G~Ws~~~P~C~~~~~~C~~p~~-~~g~~~~-~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~Ws~~-~P~C  184 (223)
T 3erb_A          108 VRQCRPNGMWDGETAVCDNGAGHCPNPGI-SLGAVRT-GFRFGHGDKVRYRCSSNLVLTGSSERECQGNGVWSGT-EPIC  184 (223)
T ss_dssp             EEEBCTTSCBSSCCCEEECSCSSSCCCCC-CTTEEEE-CCCCSTTCEEEEEECTTCEEESCSEEEBCTTSCBSSC-CCEE
T ss_pred             ceEECCCCeECCCCCEEEeCCccCcCCCC-CCCcEec-CCCCCCCCEEEEEeCCCCEEcCCCceEECCCCeECCC-CCEE
Confidence            57898  89998888  33  78998764 4666543 3578899999999999999999999999999999997 9999


Q ss_pred             eec
Q psy6641          77 VRW   79 (87)
Q Consensus        77 ~~~   79 (87)
                      ++.
T Consensus       185 ~~~  187 (223)
T 3erb_A          185 RQP  187 (223)
T ss_dssp             ECG
T ss_pred             eCC
Confidence            984

>3sw0_X H factor 1, complement factor H; innate immune response, sushi domains, cofactor in the inact of C3B, C3B, human plasma, immune system; 1.80A {Homo sapiens}

Probab=99.69  E-value=1.2e-16  Score=95.74  Aligned_cols=74  Identities=23%  Similarity=0.486  Sum_probs=63.5

Q ss_pred             eeEEc-ceecCCCC--Ccc--cCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           3 NMKCH-NLVLPEVS--EYE--ECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         3 ~~~C~-g~W~~~~~--~~~--~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      .++|+ |+|+. .|  +.+  .|+.|+.+.||.+... ...|.+|++|+|+|++||.|.|+..++|+ +|+|+.  +|.|
T Consensus        45 ~~~C~~g~Ws~-~p~C~~~~~~C~~p~~~~ng~~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~-~G~Ws~--~P~C  120 (188)
T 3sw0_X           45 EVMCLNGNWTE-PPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWSE--PPKC  120 (188)
T ss_dssp             EEEEETTEECC-CCEEECTTCCBCSCCCCTTEEESSCCCSCBCTTCEEEEEECTTCEEESCSEEEEE-TTEECC--CCEE
T ss_pred             EEEeCCCEeCC-CCccCcCCCcCCCCCccCCCeEecCCCCcccCCCEEEEEcCCCCEECCCCeEEcC-CCccCC--CCcc
Confidence            57999 99996 46  343  8999999999998753 46788999999999999999999999998 999996  5999


Q ss_pred             eecc
Q psy6641          77 VRWC   80 (87)
Q Consensus        77 ~~~~   80 (87)
                      ++.+
T Consensus       121 ~~~C  124 (188)
T 3sw0_X          121 LHPC  124 (188)
T ss_dssp             ECCE
T ss_pred             cccC
Confidence            9754

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.68  E-value=9e-17  Score=111.33  Aligned_cols=75  Identities=16%  Similarity=0.353  Sum_probs=67.6

Q ss_pred             eeEEc--ceecCC---------CC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccC
Q psy6641           3 NMKCH--NLVLPE---------VS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWM   69 (87)
Q Consensus         3 ~~~C~--g~W~~~---------~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws   69 (87)
                      .++|+  |+|+..         .|  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.+|+|+
T Consensus        48 ~~~C~~~g~Ws~~~~~~~~~~~~p~C~~~~C~~p~~~~ng~~~~~~~~~~~g~~~~~~C~~Gy~l~G~~~~~C~~~g~Ws  127 (741)
T 3hrz_D           48 TRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWS  127 (741)
T ss_dssp             EEEBCTTSCBCCEECTTCCEESCCEEEECEECCCSCCTTEEEECCCSSEETTCEEEEEECTTCEEESCSEEEBCTTSCBS
T ss_pred             eEEECCCCcCCCCCcccccCcCCCeEEeeECcCCCCCCCCEEeccCCCcccCCEEEEEECCCCccCCCcceEecCCCeEc
Confidence            57997  889974         44  467899999999999988777899999999999999999999999999999999


Q ss_pred             CCCCCeEee
Q psy6641          70 PEGIPFCVR   78 (87)
Q Consensus        70 ~~~~p~C~~   78 (87)
                      .+ .|.|++
T Consensus       128 ~~-~p~C~~  135 (741)
T 3hrz_D          128 GQ-TAICDN  135 (741)
T ss_dssp             SC-CCEEEC
T ss_pred             cC-cCeeec
Confidence            98 999995

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A

Probab=99.68  E-value=1.4e-16  Score=102.21  Aligned_cols=74  Identities=24%  Similarity=0.604  Sum_probs=66.0

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .++|+  |.|+...|  +.+.|+.|+.+.||.+...  .|.+|++|+|+|++||.|.|+..++|+.+|+|+.+ .|.|++
T Consensus        44 ~~~C~~~G~Ws~~~p~C~~~~C~~p~~~~nG~~~~~--~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~Ws~~-~P~C~~  120 (319)
T 1qub_A           44 KFICPLTGLWPINTLKCTPRVCPFAGILENGAVRYT--TFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVCAP  120 (319)
T ss_dssp             EEECCTTSCCCCCCCCEEECBCCCCCCCTTEEEECS--CSBTTCEEEEEECTTEEEESCSEEEECTTSCEESC-CCEEEE
T ss_pred             eEEECCCCEECCCCCeECccCCcCCCCCCCccEecC--CcccCCEEEEECCCCceeCCCCceEECCCCeECCC-CCCCcc
Confidence            57998  88998777  4679999999999999753  57889999999999999999999999999999997 999987


Q ss_pred             c
Q psy6641          79 W   79 (87)
Q Consensus        79 ~   79 (87)
                      .
T Consensus       121 ~  121 (319)
T 1qub_A          121 I  121 (319)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of complement pathway, regulator of complement; 2.2A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A 2qzh_A 2qzf_A

Probab=99.68  E-value=1.2e-16  Score=99.55  Aligned_cols=74  Identities=23%  Similarity=0.551  Sum_probs=66.2

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~   75 (87)
                      .++|+  |.|+...|  +.+.|+.|+.+.||.+... ..+.+|++|+|+|++||.|.|+..++|+.+|   +|+.. .|.
T Consensus       110 ~~~C~~~g~Ws~~~p~C~~~~C~~p~~~~nG~~~~~-~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~~~~Ws~~-~P~  187 (254)
T 1ok3_A          110 KLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVP-GGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPE  187 (254)
T ss_dssp             EEEBCTTSCBCCCCCSEEECBCCCCCCCTTEEEECT-TCSBTTCEEEEEECTTEEEESCSEEEEEEETTEEEESSC-CCE
T ss_pred             eEEECCCCeECCCCCeeCccCCcCCCCCCCCEEEcC-CCcEEcCEEEEECCCCceeCCCcceEEEeCCCcccccCC-CCc
Confidence            57998  89998877  5678999999999999864 4578899999999999999999999999888   89997 999


Q ss_pred             Eee
Q psy6641          76 CVR   78 (87)
Q Consensus        76 C~~   78 (87)
                      |++
T Consensus       188 C~~  190 (254)
T 1ok3_A          188 CRE  190 (254)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            987

>3o8e_B Membrane cofactor protein; short consensus repeat, complement control protein, fiber KN virus-receptor interaction, cell adhesion-immunity complex; HET: NAG; 2.84A {Homo sapiens} PDB: 2o39_C* 1ckl_A* 3inb_C* 3l89_M*

Probab=99.67  E-value=1.9e-16  Score=98.59  Aligned_cols=76  Identities=24%  Similarity=0.416  Sum_probs=66.7

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEecC-CCcCCCCEEEEEcCC-----CCEEcCCCceeeCCCCccC
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACER-----GFELLGPSRRVCDKTGQWM   69 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~-----gy~l~G~~~~~C~~~g~Ws   69 (87)
                      .++|+  |   .|+...|  +.+.|+.|+.+.||.+.... ..|.+|++|+|+|+.     ||.|.|+..++|+.+|+|+
T Consensus       104 ~~~C~~~G~~~~Ws~~~P~C~~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~g~~~~gy~l~G~~~~~C~~~G~Ws  183 (252)
T 3o8e_B          104 ILYCELKGSVAIWSGKPPICEKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVWS  183 (252)
T ss_dssp             EEEEEESSSCEEESSCCCEEEECEECCCCCCTTEEESSTTCCCEETTCEEEEEECCCSSSSCCEEESCSEEEBCTTSSBS
T ss_pred             EEEEeCCCCCCeeCCCCCeEeeeEcCCCCCCCCCcEeccCCceecCCCEEEEEeCCCCCCCCeEEeCCCceEECCCCeEC
Confidence            57898  6   7998888  56789999999999987643 568899999999998     8999999999999999999


Q ss_pred             CCCCCeEeec
Q psy6641          70 PEGIPFCVRW   79 (87)
Q Consensus        70 ~~~~p~C~~~   79 (87)
                      .. .|.|++.
T Consensus       184 ~~-~P~C~~v  192 (252)
T 3o8e_B          184 RA-APECKVV  192 (252)
T ss_dssp             SC-CCEEECC
T ss_pred             CC-CCEEeee
Confidence            97 9999864

>2xrb_A Complement regulatory protein CRRY; immune system, immunology; 2.50A {Rattus norvegicus} PDB: 2xrd_A

Probab=99.67  E-value=2.4e-16  Score=99.96  Aligned_cols=75  Identities=23%  Similarity=0.572  Sum_probs=66.0

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~   75 (87)
                      .++|+  |+|+...|  +.+.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|   +|+.. .|.
T Consensus        78 ~~~C~~~g~Ws~~~p~C~~~~C~~p~~~~nG~~~~~-~~~~~G~~v~y~C~~GY~l~G~~~~~C~~~g~~~~Ws~~-~P~  155 (290)
T 2xrb_A           78 SITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVN-TDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAE-API  155 (290)
T ss_dssp             EEEECTTSCEECCTTCSCBCBCCCCCCCTTEEEEES-SCSBTTCEEEEEECTTEEEESCSEEEEEEETTEEEESSC-CCE
T ss_pred             eEEECCCCeECCCCCCcCcCCCcCCCCCCCceEecC-CCcccCCEEEEECCCCceeCCCCceEEEeCCCCceeCCC-CCe
Confidence            57998  89997766  5679999999999999764 4588999999999999999999999999888   79997 999


Q ss_pred             Eeec
Q psy6641          76 CVRW   79 (87)
Q Consensus        76 C~~~   79 (87)
                      |++.
T Consensus       156 C~~v  159 (290)
T 2xrb_A          156 CESI  159 (290)
T ss_dssp             EEEC
T ss_pred             eccc
Confidence            9973

>1ly2_A CD21, complement receptor type 2; epstein BARR virus, regulator of comple activation, short consensus repeat, viral receptor; HET: NAG; 1.80A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1w2r_A 1w2s_B 1ghq_B* 3oed_C

Probab=99.66  E-value=1.2e-16  Score=90.71  Aligned_cols=60  Identities=27%  Similarity=0.593  Sum_probs=54.9

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCC----CCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDK----TGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~----~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+.    +|+|+.+ .|.|++
T Consensus         2 i~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~~~~~g~Ws~~-~P~C~~   65 (130)
T 1ly2_A            2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APKCEY   65 (130)
T ss_dssp             CEECCCCCCTTEEECCCCSSEETTCEEEEEECTTEEEESCSEEEEECSSSSSCEESSC-CCEEEE
T ss_pred             ccCCCCCCCCCCeEecCCCcccCCCEEEEEcCCCCEEeCCCeeEEeCCCCCCCeECCC-CCeeEc
Confidence            68999999999999876677899999999999999999999999986    7999997 999985

>1qub_A Protein (human BETA2-glycoprotein I); short consensus repeat, sushi, complement control protein, N glycosylation, multi-domain, membrane adhesion; HET: NAG MAN; 2.70A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1c1z_A* 1g4f_A 1g4g_A 2kri_A 3op8_A

Probab=99.66  E-value=2.5e-16  Score=101.00  Aligned_cols=75  Identities=28%  Similarity=0.649  Sum_probs=65.6

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      .++|+  |+|+. .|  +.+.|+.|+.+.||.+... ...|.+|++|+|.|++||.|.|+..++|+++|+|+.  .|.|+
T Consensus       166 ~~~C~~~G~Ws~-~P~C~~v~C~~p~~~~nG~~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~Ws~--~P~C~  242 (319)
T 1qub_A          166 TITCTTHGNWTK-LPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSA--MPSCK  242 (319)
T ss_dssp             EEEBCTTSSBSC-CCEEEECEECCCCCCTTEEEECCSCSSEETTCEEEEEECTTEEESSCSEEEBCTTSSBSC--CCCEE
T ss_pred             eEEECCCCeECC-CCceeccCCCCCCCCCCCeEecCCCCccccCCEEEEEcCCCCEECCCCCeEECCCCcCCC--CCCcc
Confidence            57898  99997 56  4678999999999999764 357889999999999999999999999999999995  69999


Q ss_pred             ecc
Q psy6641          78 RWC   80 (87)
Q Consensus        78 ~~~   80 (87)
                      +.+
T Consensus       243 ~~C  245 (319)
T 1qub_A          243 ASC  245 (319)
T ss_dssp             ECB
T ss_pred             CcC
Confidence            754

>3gov_A MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_A

Probab=99.65  E-value=2.3e-16  Score=91.95  Aligned_cols=62  Identities=26%  Similarity=0.460  Sum_probs=56.1

Q ss_pred             CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCC------ceeeCCCCccCCCCCCeEee
Q psy6641          16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPS------RRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~------~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|..      .++|+.+|+|+.. .|.|++
T Consensus         4 ~~i~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~l~g~~~~~~s~~~~C~~~G~Ws~~-~p~C~~   71 (155)
T 3gov_A            4 TGNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNK-IPTCKI   71 (155)
T ss_dssp             -CCEECCCCCCTTEEEESCCSSEETTCEEEEEECTTEEEEETTEEESEEEEEBCTTSCBSSC-CCEEEE
T ss_pred             cceeCCCCCCCCCCEEecCCCCcccCCEEEEECCCCcEEccCccccceeEEEECCCCeEcCC-CCeeeE
Confidence            4578999999999999887778999999999999999999876      7999999999997 899996

>2wii_C H factor 1, complement factor H; immune system, sushi, secreted, polymorphism, glycoprotein, complement system, complement pathway, immune response; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2rlp_A 2rlq_A

Probab=99.65  E-value=7.6e-16  Score=97.09  Aligned_cols=75  Identities=27%  Similarity=0.657  Sum_probs=65.1

Q ss_pred             eeeEEc-ceecCCCC----CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCce-eeCCCCccCCCCCC
Q psy6641           2 VNMKCH-NLVLPEVS----EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRR-VCDKTGQWMPEGIP   74 (87)
Q Consensus         2 ~~~~C~-g~W~~~~~----~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~-~C~~~g~Ws~~~~p   74 (87)
                      ..++|. |.|+...|    +.+.|+.|+.+.||.+... ...|.+|++|+|+|++||.|.|+..+ +|+.+| |+.. .|
T Consensus        49 ~~~~C~~g~Ws~~~P~~~C~~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~r~C~~~g-Ws~~-~P  126 (277)
T 2wii_C           49 IIMVCRKGEWVALNPLRKCQKRPCGHPGDTPFGTFTLTGGNVFEYGVKAVYTCNEGYQLLGEINYRECDTDG-WTND-IP  126 (277)
T ss_dssp             EEEEECSSSEEESCSSCCCEECBCCCCCCCTTEEEEEESSSSSBTTCEEEEEECTTEEEESSCCEEEBCSSS-BCSC-CC
T ss_pred             ceEEcCCCeeeCCCCCccccccCCcCCCCCCCCEEEecCCCcccCCCEEEEEcCCCceEeCCCceeEeCCCC-cCCC-CC
Confidence            357999 99997654    4578999999999998764 36789999999999999999998876 999999 9997 99


Q ss_pred             eEee
Q psy6641          75 FCVR   78 (87)
Q Consensus        75 ~C~~   78 (87)
                      .|++
T Consensus       127 ~C~~  130 (277)
T 2wii_C          127 ICEV  130 (277)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9985

>1rid_A Complement control protein; regulation, SCR, immune system; HET: IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A 1vvc_A 1vvd_A 1vve_A

Probab=99.63  E-value=2.4e-16  Score=97.81  Aligned_cols=73  Identities=27%  Similarity=0.604  Sum_probs=64.0

Q ss_pred             eeEEc-c-----eecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCC
Q psy6641           3 NMKCH-N-----LVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP   74 (87)
Q Consensus         3 ~~~C~-g-----~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p   74 (87)
                      .++|+ +     .|+...|  +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+. |+|+ . .|
T Consensus       104 ~~~C~~~~g~~g~Ws~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~-g~Ws-~-~P  180 (244)
T 1rid_A          104 KSYCELGSTGSMVWNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCSG-GEWS-D-PP  180 (244)
T ss_dssp             SBCBCCSSSSCCSBSSCSCCEESSCCCSCCCCSSCEECCSSSSCCSSCCBCEECCSSCEEECSSSBCCSS-SCCC-S-CC
T ss_pred             ceEEECCCCCccccCCCCCeeccCcCcCCCCCCCCEEecCCCceecCCeEEEEeCCCCeeCCCCceEECC-CccC-C-CC
Confidence            46786 5     8998877  5678999999999999855567999999999999999999999999997 9999 7 89


Q ss_pred             eEee
Q psy6641          75 FCVR   78 (87)
Q Consensus        75 ~C~~   78 (87)
                      .|++
T Consensus       181 ~C~~  184 (244)
T 1rid_A          181 TCQI  184 (244)
T ss_dssp             EEES
T ss_pred             eeee
Confidence            9975

>4ayi_A H factor 1, complement factor H; immune system, antigens; 2.31A {Homo sapiens} PDB: 4aye_A 4ayd_A 4aym_A 2w80_A 2w81_A 2jgw_A 2jgx_A

Probab=99.63  E-value=5.2e-17  Score=92.06  Aligned_cols=70  Identities=19%  Similarity=0.360  Sum_probs=55.9

Q ss_pred             eeEEc-ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEc-CCCceeeCCCCccCCCCCCeEe
Q psy6641           3 NMKCH-NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL-GPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus         3 ~~~C~-g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~-G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      .++|+ +.|++.++ ..+.|+  +.+.||.+......|.+|++|+|+|++||.|. |+..++|+++| |+ + +|.|+
T Consensus        53 ~~~C~~~gWs~~P~C~~~~c~--P~i~nG~~~~~~~~y~~g~~v~y~C~~Gy~l~~g~~~~~C~~~g-Ws-~-~P~Cv  125 (125)
T 4ayi_A           53 HIHCTQDGWSPAVPCLRKCYF--PYLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENG-WS-P-TPRCI  125 (125)
T ss_dssp             EEEEETTEEESSSCCEEEEEC--CCCTTBCCTTTTCEEETTCEEECCBCTTCCCGGGCCEEEEETTE-EE-S-CCCCC
T ss_pred             EEEeCCCcccCCCCCcCcCCC--CCCCCCEEeCCCCcccCCCEEEEEcCCCCEeCCCCceEEECCCc-cc-C-cCEeC
Confidence            47899 77997654 345553  35779988766677889999999999999997 89999998777 98 4 79884

>1gkg_A Complement receptor type 1; module, SCR, structure, sushi; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1ppq_A

Probab=99.62  E-value=1.2e-15  Score=87.32  Aligned_cols=61  Identities=30%  Similarity=0.682  Sum_probs=55.1

Q ss_pred             CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCc---cCCCCCCeEee
Q psy6641          16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQ---WMPEGIPFCVR   78 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~---Ws~~~~p~C~~   78 (87)
                      +.+.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|+   |+.. .|.|++
T Consensus         3 ~~~~C~~p~~~~nG~~~~~-~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~G~~~~Ws~~-~P~C~~   66 (136)
T 1gkg_A            3 EAKSCKTPPDPVNGMVHVI-TDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPICQR   66 (136)
T ss_dssp             SCCBCCCCCCCSSCEEECC-SCSBTTCEEEEECCSSEEECSCSEEEEEECSSSEEESSC-CCCEEE
T ss_pred             ccCCCcCCCCCCCCEEECC-CCCccCCEEEEECCCCCeEcCCCceEEeCCCccccccCC-CCCEEe
Confidence            3578999999999999753 56889999999999999999999999999999   9997 999997

>3iyp_F Complement decay-accelerating factor; virus, receptor, complex, echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo sapiens}

Probab=99.62  E-value=1e-15  Score=100.36  Aligned_cols=75  Identities=23%  Similarity=0.536  Sum_probs=66.8

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~   75 (87)
                      .++|+  |.|+...+  +.+.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|   +|+.. .|.
T Consensus       142 ~~tC~~~g~Ws~~~p~C~~~~C~~p~~~~nG~~~~~-~~~~~Gs~v~y~C~~GY~L~G~~~~~C~~~G~~~~Ws~~-~P~  219 (381)
T 3iyp_F          142 KLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVP-GGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPE  219 (381)
T ss_dssp             EEEBCTTSCBCCCCCSEEECBCCCCCCCTTEEEECS-SCSBTTCEEEEEECTTEEEESCSEEEEEEETTEEEESSC-CCE
T ss_pred             eEEecCCCcCcccCceeccccCCCCCccCCCceecC-CCcCcCCEEEEEeCCCcccCCccceEEecCCCcceEcCC-CCe
Confidence            57997  89998887  4678999999999999865 4578899999999999999999999999888   89997 999


Q ss_pred             Eeec
Q psy6641          76 CVRW   79 (87)
Q Consensus        76 C~~~   79 (87)
                      |++.
T Consensus       220 C~~v  223 (381)
T 3iyp_F          220 CREI  223 (381)
T ss_dssp             EEEC
T ss_pred             eeee
Confidence            9974

>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR, CCP, immune system; NMR {Rattus norvegicus}

Probab=99.62  E-value=1.2e-15  Score=97.67  Aligned_cols=74  Identities=23%  Similarity=0.587  Sum_probs=65.1

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~   75 (87)
                      .++|+  |.|+...|  +.+.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|   +|+.. .|.
T Consensus        45 ~~~C~~~g~Ws~~~p~C~~~~C~~p~~~~nG~~~~~-~~~~~g~~~~y~C~~Gy~l~G~~~~~C~~~g~~~~Ws~~-~P~  122 (320)
T 1ntj_A           45 SITCEVNSVWTSPQDVCIRKQCETPLDPQNGIVHVN-TDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAE-API  122 (320)
T ss_pred             eEEECCCCEECCCCCccccccCcCCCCCCCCEEECC-CCcccCCEEEEEcCCCCEECCCCceEEEeCCCCeeeCCC-CCc
Confidence            57998  89997766  5679999999999998764 4578999999999999999999999999887   89997 899


Q ss_pred             Eee
Q psy6641          76 CVR   78 (87)
Q Consensus        76 C~~   78 (87)
                      |++
T Consensus       123 C~~  125 (320)
T 1ntj_A          123 CES  125 (320)
T ss_pred             CcC
Confidence            986

>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain, regulator of C activation, C3D, immune system; 1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A 3kzj_A 2xqw_C

Probab=99.62  E-value=8.5e-16  Score=87.22  Aligned_cols=61  Identities=28%  Similarity=0.648  Sum_probs=53.8

Q ss_pred             cccCCCCCCCCCeEEEe-cCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeecc
Q psy6641          17 YEECRFPGAPAHSSIVF-SNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWC   80 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~-~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~~   80 (87)
                      .+.|+.|+.+.||.+.. ....|.+|++|+|+|++||.|.|+..++|+ +|+|+ . .|.|++.|
T Consensus         4 ~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~-~g~Ws-~-~p~C~~~C   65 (129)
T 3r62_A            4 FGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLYQLEGNKRITCR-NGQWS-E-PPKCLHPC   65 (129)
T ss_dssp             -CCBCSCCCBTTEEESSCCCSSBCTTCEEEEEECTTCEEESCSEEEEE-TTEEC-C-CCEEECCE
T ss_pred             cccCcCCCCCCCCEEecCCCCcCCCCCEEEEECCCCCEeCCCCeeEcC-CCcCC-C-CCCccCcC
Confidence            56899999999999976 346799999999999999999999999999 99999 6 89998743

>1rid_A Complement control protein; regulation, SCR, immune system; HET: IDS SGN; 2.10A {Vaccinia virus} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB: 1g44_A 1g40_A* 1y8e_A* 1e5g_A 1vvc_A 1vvd_A 1vve_A

Probab=99.61  E-value=4.5e-16  Score=96.58  Aligned_cols=73  Identities=25%  Similarity=0.520  Sum_probs=64.7

Q ss_pred             eeeEEc-ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCC----CccCCCCCC
Q psy6641           2 VNMKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKT----GQWMPEGIP   74 (87)
Q Consensus         2 ~~~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~----g~Ws~~~~p   74 (87)
                      ..++|. |.|++. |  +.+.|+.|+.+.||.+..  ..|.+|++|+|+|++||.|.|+..++|+.+    |+|+.. .|
T Consensus        47 ~~~~C~~g~Ws~~-p~C~~~~C~~p~~~~nG~~~~--~~~~~g~~~~y~C~~Gy~l~G~~~~~C~~~~g~~g~Ws~~-~p  122 (244)
T 1rid_A           47 IYAKCTGTGWTLF-NQCIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE-AP  122 (244)
T ss_dssp             SSEEEETTEEESC-CCEECCCCCCCCCCSSCBCCC--CCCSSCCCBCCBCCSSCEESSCSSBCBCCSSSSCCSBSSC-SC
T ss_pred             CeEEcCCCcCCCC-CeeeeCCCcCCCCCCCCEEeC--CCcccCCEEEEECCCCCeECCCcceEEECCCCCccccCCC-CC
Confidence            358999 999977 5  467899999999999876  678899999999999999999999999876    799997 89


Q ss_pred             eEee
Q psy6641          75 FCVR   78 (87)
Q Consensus        75 ~C~~   78 (87)
                      .|++
T Consensus       123 ~C~~  126 (244)
T 1rid_A          123 ICES  126 (244)
T ss_dssp             CEES
T ss_pred             eecc
Confidence            9987

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.61  E-value=2.7e-15  Score=97.40  Aligned_cols=76  Identities=25%  Similarity=0.494  Sum_probs=63.7

Q ss_pred             eeEEc------ceecCCCC--Cc----ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCC
Q psy6641           3 NMKCH------NLVLPEVS--EY----EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP   70 (87)
Q Consensus         3 ~~~C~------g~W~~~~~--~~----~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~   70 (87)
                      .++|+      |+|+...|  +.    +.|+.|..+.++.+.. ...|.+|++|+|.|++||.|.|+..++|+.+|+|++
T Consensus        43 ~~~C~~~~~~~g~Ws~~~P~C~~~~~~~~C~~p~~~~~~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~  121 (376)
T 2aty_A           43 SLLCITKDKVDGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRG-STPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGP  121 (376)
T ss_pred             ceEEeccCCCCCeECCCCCccccccCccEeCCCcCCCCeEecC-CCCccCCCEEEEECCCCCEECCCcCeEECCCCEECC
Confidence            46883      89998877  33    6899988776666654 356889999999999999999999999999999997


Q ss_pred             -CCCCeEeecc
Q psy6641          71 -EGIPFCVRWC   80 (87)
Q Consensus        71 -~~~p~C~~~~   80 (87)
                       . .|.|++.+
T Consensus       122 ~~-~p~C~~~~  131 (376)
T 2aty_A          122 TR-LPTCVSVF  131 (376)
T ss_pred             CC-CCEeEccC
Confidence             7 89999764

>2xrb_A Complement regulatory protein CRRY; immune system, immunology; 2.50A {Rattus norvegicus} PDB: 2xrd_A

Probab=99.61  E-value=1.2e-15  Score=96.79  Aligned_cols=75  Identities=25%  Similarity=0.526  Sum_probs=65.9

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCC------CEEcCCCceeeCCC---
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERG------FELLGPSRRVCDKT---   65 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~g------y~l~G~~~~~C~~~---   65 (87)
                      .++|+  |   .|+...|  +.+.|+.|+.+.||.+... ...|.+|++|+|+|++|      |.|.|+..++|+.+   
T Consensus       137 ~~~C~~~g~~~~Ws~~~P~C~~v~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~G~~~~~~y~l~G~~~~~C~~~~~~  216 (290)
T 2xrb_A          137 SAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQ  216 (290)
T ss_dssp             EEEEEEETTEEEESSCCCEEEECEECCCCCBTTEEEECSSTTCEETTCEEEEEECBCTTSCBCEEEESCSEEEEEESSSS
T ss_pred             ceEEEeCCCCceeCCCCCeeccccCCCCCCCCCCeEecCCCCccccCCEEEEEeCCCCCCcceEEecCCceeEecCCCCC
Confidence            57898  5   7998888  5678999999999998764 35788999999999999      99999999999977   


Q ss_pred             -CccCCCCCCeEee
Q psy6641          66 -GQWMPEGIPFCVR   78 (87)
Q Consensus        66 -g~Ws~~~~p~C~~   78 (87)
                       |+|+.+ .|.|++
T Consensus       217 ~G~Ws~~-~P~C~~  229 (290)
T 2xrb_A          217 VGVWSGP-PPQCIE  229 (290)
T ss_dssp             SEEESSC-CCEEEE
T ss_pred             CCeECCC-CCcccc
Confidence             999997 999986

>1gkn_A Complement receptor type 1; module, SCR, structure; NMR {Homo sapiens} SCOP: g.18.1.1 g.18.1.1

Probab=99.61  E-value=8.5e-16  Score=87.19  Aligned_cols=60  Identities=18%  Similarity=0.362  Sum_probs=54.3

Q ss_pred             cccCCCCCCCCCeEEEecC--CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          17 YEECRFPGAPAHSSIVFSN--ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~--~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .+.|+.|+.+.||.+....  ..|.+|++|+|+|++|| |.|+..++|+.+|+|+.. .|.|++
T Consensus         3 ~~~C~~p~~~~ng~~~~~~~~~~~~~g~~~~y~C~~Gy-l~G~~~~~C~~~g~Ws~~-~p~C~~   64 (128)
T 1gkn_A            3 EAHCQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEY-YGRPFSITCLDNLVWSSP-KDVCKR   64 (128)
T ss_dssp             CCEECCCCCCSSEEECSCCCCSSEESSCEEEEEECTTE-ESCCEEEEBCSSSCBCCC-CSCCEE
T ss_pred             CccCcCCCCCCCCEEeccCcCCCcCCCCEEEEEcCCCC-cCCCCceEECCCCcCCCC-CCeEcc
Confidence            3679999999999997653  57899999999999999 999999999999999987 899986

>1h03_P Complement decay-accelerating factor; immune system protein, enteroviral receptor, bacterial receptor, ligand for CD97, complement pathway; 1.7A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 1h2q_P 1uot_P 1upn_E 1h2p_P 1h04_P 2qzd_A

Probab=99.60  E-value=2.3e-15  Score=85.00  Aligned_cols=59  Identities=25%  Similarity=0.655  Sum_probs=53.5

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+... ..|.+|++|+|+|++||.|.|+..++|+.+|   +|+.. .|.|++
T Consensus         1 k~C~~p~~~~nG~~~~~-~~~~~g~~~~~~C~~Gy~l~G~~~~~C~~~g~~~~Ws~~-~p~C~~   62 (125)
T 1h03_P            1 KSCPNPGEIRNGQIDVP-GGILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPECRE   62 (125)
T ss_dssp             CBCCCCCCCTTEEEECT-TCSBTTCEEEEEECTTEEEESCSEEEEEEETTEEEESSC-CCEEEE
T ss_pred             CcCcCCCCCCCCEEECC-CCcCcCCEEEEECCCCCeECCCCeeEEcCCCCCCEeCCC-CCcCCC
Confidence            36999999999999875 4578899999999999999999999999888   89997 999987

>2yby_A Complement factor H; immune system, complement regulation, innate immunity, infec; 1.58A {Mus musculus}

Probab=99.60  E-value=1.4e-16  Score=90.09  Aligned_cols=72  Identities=22%  Similarity=0.510  Sum_probs=58.5

Q ss_pred             eeeEEc-ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCc-eeeCCCCccCCCCCCeEee
Q psy6641           2 VNMKCH-NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSR-RVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus         2 ~~~~C~-g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~-~~C~~~g~Ws~~~~p~C~~   78 (87)
                      ..++|+ +.|++. | ..+.|+. +.+.||.+......|.+|++|+|+|++||.|.|+.. ++|+.+| |+.  +|.|++
T Consensus        50 ~~~~C~~~gWs~~-p~C~~~C~~-p~~~nG~~~~~~~~y~~g~~v~~~C~~Gy~l~G~~~~~~C~~~g-Ws~--~P~C~~  124 (124)
T 2yby_A           50 DYLRCTAQGWEPE-VPCVRKCVF-HYVENGDSAYWEKVYVQGQSLKVQCYNGYSLQNGQDTMTCTENG-WSP--PPKCIR  124 (124)
T ss_dssp             EEEEEETTEEESS-SCCEEEEEE-CCCBTBCCCSSCEEEETTCEEECCBCTTCCCSSSSCEEEEETTE-EES--CSBCC-
T ss_pred             cEEEecCCCccCC-CceeeECcC-CCCCCCeEecccCcccCCCEEEEECCCCCEecCCCCeEEcCCCC-cCC--CCeecC
Confidence            468999 449986 6 3478987 567899886555678889999999999999999884 8999999 997  589863

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.58  E-value=6.3e-15  Score=102.15  Aligned_cols=75  Identities=28%  Similarity=0.528  Sum_probs=64.7

Q ss_pred             eeEEc--ceecCCCC--Cc--ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           3 NMKCH--NLVLPEVS--EY--EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~--~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      .++|+  |+|++..|  +.  +.|+.|+.+.++....  ..|.+|++|+|+|++||.|.|+..++|+.+|+|+++ .|.|
T Consensus       117 ~~~C~~~g~Ws~~~p~C~~~~~~C~~p~~~~~~~~~~--~~~~~g~~v~~~C~~gy~l~G~~~~~C~~~g~Ws~~-~p~C  193 (741)
T 3hrz_D          117 NRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVG--SQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGT-EPSC  193 (741)
T ss_dssp             EEEBCTTSCBSSCCCEEECSCSSSCCCCCCTTEEEEC--CCCSTTCEEEEEECTTSEEESCSEEEBCTTSSBSSC-CCEE
T ss_pred             ceEecCCCeEccCcCeeeccCCcCCCCCCCCCCeeeC--CccccCCEEEEEcCCCCEEcCCCeEEECCCCEEeCC-Cccc
Confidence            57997  99998888  22  6899998887776643  468899999999999999999999999999999997 9999


Q ss_pred             eecc
Q psy6641          77 VRWC   80 (87)
Q Consensus        77 ~~~~   80 (87)
                      ++..
T Consensus       194 ~~~~  197 (741)
T 3hrz_D          194 QDSF  197 (741)
T ss_dssp             ECTT
T ss_pred             cCCC
Confidence            9854

>2qy0_A Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens}

Probab=99.58  E-value=4.7e-15  Score=86.84  Aligned_cols=60  Identities=20%  Similarity=0.472  Sum_probs=52.5

Q ss_pred             ccCCCCCCCCCeEEE-ecCCCcCCCCEEEEEcCCCCEEcC------CCceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIV-FSNETLSPGTVATYACERGFELLG------PSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~-~~~~~~~~g~~~~~~C~~gy~l~G------~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+. ..+..|.+|++|+|+|++||.|.|      +..++|+.+|+|+.. .|.|++
T Consensus         3 ~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~Gy~l~g~~~~~~s~~~~C~~~G~Ws~~-~p~C~~   69 (159)
T 2qy0_A            3 QACPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA-MPRCKI   69 (159)
T ss_dssp             CBCCCCCCCSTTEEEETCCSSCBTTCEEEEEECTTEEEEETTEEESCCEEEBCTTSCBSSC-CCEEEE
T ss_pred             ccCcCCCCCCCCcEecCCCCccccCCEEEEEcCCCcEEccCCcccceeEEECCCCCcCcCC-CCcccc
Confidence            679999999999654 344679999999999999999997      478999999999997 999985

>1ntj_A Complement receptor related protein; immunology, glycoprotein, SCR, CCP, immune system; NMR {Rattus norvegicus}

Probab=99.58  E-value=5.1e-15  Score=94.75  Aligned_cols=75  Identities=25%  Similarity=0.526  Sum_probs=65.2

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCC------CEEcCCCceeeCCC---
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERG------FELLGPSRRVCDKT---   65 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~g------y~l~G~~~~~C~~~---   65 (87)
                      .++|+  |   .|+...|  +.+.|+.|+.+.||.+... ...|.+|++|+|+|++|      |.|.|+..++|+.+   
T Consensus       104 ~~~C~~~g~~~~Ws~~~P~C~~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~G~~~~~~y~l~G~~~~~C~~~~~~  183 (320)
T 1ntj_A          104 SAMCIISDQSVAWDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQ  183 (320)
T ss_pred             ceEEEeCCCCeeeCCCCCcCcCCCCCCCCCCCCCcEecCCCCccccCCEEEEECCCCCCCcceEEEeCCCceEEecCCCC
Confidence            57898  5   7998777  5678999999999988653 35788999999999999      99999999999987   


Q ss_pred             -CccCCCCCCeEee
Q psy6641          66 -GQWMPEGIPFCVR   78 (87)
Q Consensus        66 -g~Ws~~~~p~C~~   78 (87)
                       |+|+.+ .|.|++
T Consensus       184 ~G~Ws~~-~P~C~~  196 (320)
T 1ntj_A          184 VGVWSGP-PPQCIE  196 (320)
T ss_pred             CCEECCC-Cccccc
Confidence             999997 899986

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.57  E-value=7.5e-15  Score=99.44  Aligned_cols=76  Identities=28%  Similarity=0.496  Sum_probs=65.9

Q ss_pred             eeEEc--ceecCCCC--Ccc-cCCCCCCCCCeEEE-ecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           3 NMKCH--NLVLPEVS--EYE-ECRFPGAPAHSSIV-FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~-~C~~p~~~~~g~~~-~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      .++|+  |+|++..|  ..+ .|+.|+.+.||.+. .....|.+|++|+|.|++||.|.|+..++|+.+|+|+.. .|.|
T Consensus       238 ~~~C~~~g~Ws~~~P~C~~~~~C~~p~~~~~g~~~~~~~~~~~~g~~v~~~C~~Gy~l~G~~~~~C~~~g~W~~~-~p~C  316 (551)
T 1ntl_A          238 SVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQCQSDGSWNPL-LAKC  316 (551)
T ss_pred             CeEECCCCeECCCCccccccccCCCCCcCCCCccccCCCCCcccCCEEEEEcCCCcEecCCcceEEeCCCeECCC-CCee
Confidence            57898  89998877  344 79999999999886 334568999999999999999999999999999999987 8999


Q ss_pred             eec
Q psy6641          77 VRW   79 (87)
Q Consensus        77 ~~~   79 (87)
                      ...
T Consensus       317 ~~~  319 (551)
T 1ntl_A          317 VSR  319 (551)
T ss_pred             eee
Confidence            864

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=99.56  E-value=3.8e-15  Score=105.95  Aligned_cols=75  Identities=23%  Similarity=0.310  Sum_probs=59.1

Q ss_pred             eeEEc--c----eecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCe
Q psy6641           3 NMKCH--N----LVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g----~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~   75 (87)
                      .++|+  |    .|+...| ....|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+++|+|+.+ .|.
T Consensus       599 ~~~C~~~g~~~~~Ws~~~P~C~~~C~~p~~~~nG~~~~~~~~y~~g~~v~y~C~~Gy~L~G~~~~~C~~~G~Ws~~-~P~  677 (913)
T 3t5o_A          599 GQPCINDDEEMKEVDLPEIEADSGCPQPVPPENGFIRNEKQLYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQG-DVE  677 (913)
T ss_dssp             --CCCCCCCC-----------CCCBCCCCCCTTEEESCCCSCBCTTCEEEEEECTTEEEESCCEEEECTTSCEECC-SCE
T ss_pred             cceEeCCCCccccCCCCCCCCcCcCCCCCCCCCceEecCCCceecccEEEEEeCCCCEECCCCceEECCCCeEcCC-CCe
Confidence            46787  4    6998877 23389999999999998766789999999999999999999999999999999998 999


Q ss_pred             Eee
Q psy6641          76 CVR   78 (87)
Q Consensus        76 C~~   78 (87)
                      |++
T Consensus       678 C~~  680 (913)
T 3t5o_A          678 CQR  680 (913)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            987

>2uwn_A H factor 1, human complement factor H; alternative splicing, sucrose octasulphate, AGE-related macular degeneration, complement alternate pathway; HET: SCR; 2.35A {Homo sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A

Probab=99.56  E-value=7.3e-16  Score=92.37  Aligned_cols=71  Identities=24%  Similarity=0.390  Sum_probs=58.9

Q ss_pred             eeEEc-ceecCCCC--Ccc-cCCC-CCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCC---CceeeCCCCccCCCCCC
Q psy6641           3 NMKCH-NLVLPEVS--EYE-ECRF-PGAPAHSSIVFSNETLSPGTVATYACERGFELLGP---SRRVCDKTGQWMPEGIP   74 (87)
Q Consensus         3 ~~~C~-g~W~~~~~--~~~-~C~~-p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~---~~~~C~~~g~Ws~~~~p   74 (87)
                      .++|+ +.|++ .|  +.+ .|+. |+.+.||.+......|.+|++|+|+|++||.|.|.   ..++|+++| |++  .|
T Consensus       109 ~~~C~~~gWs~-~P~C~~v~~C~~~p~~~~nG~~~~~~~~y~~g~~v~~~C~~Gy~l~g~~~s~~~~C~~~g-Ws~--~P  184 (187)
T 2uwn_A          109 TVTCMENGWSP-TPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSITCGKDG-WSA--QP  184 (187)
T ss_dssp             EEEEETTEEES-CSCCEECCEEEGGGCCCSSEECCSCCSEEETTCEEEEEECTTCCCSSSCSEEEEEEETTE-ESC--CC
T ss_pred             EEEecCCCcCC-CCceeecccCCCCCccccCceEcCCCccCcCCCEEEEECCCCCEecCCCCcCeEEECCCC-cCC--CC
Confidence            58999 33998 46  355 8998 58899998876556788899999999999999985   789999999 997  58


Q ss_pred             eEe
Q psy6641          75 FCV   77 (87)
Q Consensus        75 ~C~   77 (87)
                      .|+
T Consensus       185 ~Ci  187 (187)
T 2uwn_A          185 TCI  187 (187)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            884

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.56  E-value=9.2e-15  Score=95.86  Aligned_cols=70  Identities=24%  Similarity=0.442  Sum_probs=56.5

Q ss_pred             ceecCCCC-CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEE------cCCCceeeCCCCccCCCCCCeEee
Q psy6641           8 NLVLPEVS-EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL------LGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus         8 g~W~~~~~-~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l------~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      ..|+.... +.+.|+.|+.+.||.+......|.+|++|+|+|++||.|      .|+..++|+.+|+|+.+ .|.|++
T Consensus         4 ~gw~~~~~c~~~~C~~p~~~~ng~~~~~~~~~~~g~~v~~~C~~Gy~l~~g~~~~g~~~~~C~~~g~Ws~~-~p~C~~   80 (403)
T 1zjk_A            4 TGWKIHYTSTAHACPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRP-MPACSI   80 (403)
T ss_dssp             ---------CCCCBCCCCCCTTEEESSCCSCBCTTCEEEEEECTTEEEEETTEECSCCEEEBCSSSSBSSC-CCEEEE
T ss_pred             CceEEEEEECCccCcCCCCCCCceEcccCCccccCCEEEEEeCCCCEEccCCCcCCceeeEcCCCCEeCCC-CCCccc
Confidence            46775554 678999999999999987777899999999999999999      46678999999999997 999997

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.55  E-value=9e-15  Score=94.93  Aligned_cols=60  Identities=27%  Similarity=0.568  Sum_probs=55.8

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeC----CCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD----KTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~----~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+    .+|+|+.+ .|.|++
T Consensus         2 i~C~~p~~~~nG~~~~~~~~~~~g~~~~y~C~~Gy~l~G~~~~~C~~~~~~~g~Ws~~-~P~C~~   65 (376)
T 2aty_A            2 ISCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APKCEY   65 (376)
T ss_pred             CCCcCCCCCCCCEEeccCCcccCCCEEEEEeCCCCEEcCCCceEEeccCCCCCeECCC-CCcccc
Confidence            6899999999999987667799999999999999999999999999    79999997 899986

>3r62_A H factor 1, complement factor H; immunity, repeating sushi domain, regulator of C activation, C3D, immune system; 1.52A {Homo sapiens} PDB: 2bzm_A 3oxu_D 3rj3_D 2g7i_A 3kxv_A 3kzj_A 2xqw_C

Probab=99.55  E-value=1.6e-15  Score=86.07  Aligned_cols=71  Identities=23%  Similarity=0.509  Sum_probs=56.1

Q ss_pred             eeEEc-ceecCCCC-CcccCCCCCCCCCe-EEEe----cCCCc-CCCCEEEEEcCCCCEEcCCC---ceeeCCCCccCCC
Q psy6641           3 NMKCH-NLVLPEVS-EYEECRFPGAPAHS-SIVF----SNETL-SPGTVATYACERGFELLGPS---RRVCDKTGQWMPE   71 (87)
Q Consensus         3 ~~~C~-g~W~~~~~-~~~~C~~p~~~~~g-~~~~----~~~~~-~~g~~~~~~C~~gy~l~G~~---~~~C~~~g~Ws~~   71 (87)
                      .++|+ |+|+ ..| ....|+.|+.+.|| .+..    ....| .+|++|+|.|++||.|.|+.   .++|+ +|+|  .
T Consensus        47 ~~~C~~g~Ws-~~p~C~~~C~~p~~~~~g~~i~~~~~~~~~~y~~~g~~v~f~C~~Gy~l~G~~~~~~~~C~-~G~W--~  122 (129)
T 3r62_A           47 RITCRNGQWS-EPPKCLHPCVISREIMENYNIALRWRAKQKLYSRTGESVEFVCKRGYRLSSRSHTLRTTCW-DGKL--E  122 (129)
T ss_dssp             EEEEETTEEC-CCCEEECCEECCHHHHHHHTEEETTTTTCCSEECTTCEEEEEECTTEEECTTSCCSEEECB-TTBC--C
T ss_pred             eeEcCCCcCC-CCCCccCcCCCChhhhcccceeeeecccccccccCCCEEEEEeCCCccccCCCCcceEEeC-CCcC--C
Confidence            57899 9999 566 23389988777777 3322    23455 68999999999999999988   89998 8999  4


Q ss_pred             CCCeEee
Q psy6641          72 GIPFCVR   78 (87)
Q Consensus        72 ~~p~C~~   78 (87)
                       .|.|++
T Consensus       123 -~P~C~~  128 (129)
T 3r62_A          123 -YPTCAK  128 (129)
T ss_dssp             -CCCEEE
T ss_pred             -Cceeee
Confidence             799986

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A

Probab=99.54  E-value=2.2e-14  Score=104.33  Aligned_cols=75  Identities=25%  Similarity=0.533  Sum_probs=66.0

Q ss_pred             eEEc-ceecCCCC--CcccCCCCCCCCCeEEEec----CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeE
Q psy6641           4 MKCH-NLVLPEVS--EYEECRFPGAPAHSSIVFS----NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC   76 (87)
Q Consensus         4 ~~C~-g~W~~~~~--~~~~C~~p~~~~~g~~~~~----~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C   76 (87)
                      ++|+ +.|+...|  +.+.|+.|+.+.||.+...    ...|.+|++|+|+|++||.|.|+..++|+++|+|+.+ .|.|
T Consensus       109 ~~C~~~gWs~~~P~C~~i~C~~~~~p~nG~~~~~~~~~~~~~~~g~~v~f~C~~Gy~L~G~~~~~C~~~G~Ws~~-~P~C  187 (1213)
T 1haq_A          109 RECDTDGWTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKE-KPKC  187 (1213)
T ss_pred             eEECCCCccCCCCCeeccccCCCCCCCCCeEeccccccCCccccCCEEEEEcCCCCEEcCCCceEECCCCcCCCC-CCEE
Confidence            6899 44999888  5789999999999998642    2568899999999999999999999999999999997 9999


Q ss_pred             eec
Q psy6641          77 VRW   79 (87)
Q Consensus        77 ~~~   79 (87)
                      ++.
T Consensus       188 ~~v  190 (1213)
T 1haq_A          188 VEI  190 (1213)
T ss_pred             Eec
Confidence            864

>2uwn_A H factor 1, human complement factor H; alternative splicing, sucrose octasulphate, AGE-related macular degeneration, complement alternate pathway; HET: SCR; 2.35A {Homo sapiens} PDB: 2v8e_A* 2ic4_A 2w80_A 2w81_A 2jgw_A 2jgx_A

Probab=99.53  E-value=3.1e-15  Score=89.60  Aligned_cols=73  Identities=25%  Similarity=0.549  Sum_probs=60.9

Q ss_pred             eeEEc-ceecCCCCCcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEc-CCCceeeCCCCccCCCCCCeEeec
Q psy6641           3 NMKCH-NLVLPEVSEYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL-GPSRRVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus         3 ~~~C~-g~W~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~-G~~~~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      .++|+ +.|++..+....|+.| .+.||.+......|.+|++|+|+|++||.|. |+..++|+.+| |++  .|.|++.
T Consensus        52 ~~~C~~~gWs~~~~C~~~C~~p-~~~ng~~~~~~~~~~~g~~v~~~C~~Gy~l~~G~~~~~C~~~g-Ws~--~P~C~~v  126 (187)
T 2uwn_A           52 HIHCTQDGWSPAVPCLRKCYFP-YLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENG-WSP--TPRCIRV  126 (187)
T ss_dssp             EEEEETTEEESSSCCEEEEECC-CCTTEECSCTTCEEETTCEEECEECTTEECSSSCSEEEEETTE-EES--CSCCEEC
T ss_pred             EEEeCCCCCCCCCCcCCcCcCC-CCCccEEcCCCccccCCCEEEEEcCCCCCccCCCeEEEecCCC-cCC--CCceeec
Confidence            68999 4499877743489875 6789998665567889999999999999997 99999999999 996  5999863

>3sw0_X H factor 1, complement factor H; innate immune response, sushi domains, cofactor in the inact of C3B, C3B, human plasma, immune system; 1.80A {Homo sapiens}

Probab=99.53  E-value=2.6e-14  Score=85.53  Aligned_cols=60  Identities=23%  Similarity=0.498  Sum_probs=53.5

Q ss_pred             cccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeec
Q psy6641          17 YEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      .+.|+.|+.+.||.+... ...|.+|++|+|+|++||.|.|+..++|+ +|+|+.  .|.|++.
T Consensus         2 ~v~C~~pp~~~ng~~~~~~~~~~~~g~~~~y~C~~Gy~l~G~~~~~C~-~g~Ws~--~p~C~~~   62 (188)
T 3sw0_X            2 GTSCVNPPTVQNAYIVSRQMSKYPSGERVRYQCRSPYEMFGDEEVMCL-NGNWTE--PPQCKDS   62 (188)
T ss_dssp             CCCBCSCCCCTTEEECSCCCSSBCTTCEEEEEECTTCEEESCSEEEEE-TTEECC--CCEEECT
T ss_pred             cCcCcCCCCCCCCEEecccCCcccCCCEEEEECCCCCEECCCCEEEeC-CCEeCC--CCccCcC
Confidence            468999999999998764 46789999999999999999999999998 999994  6999974

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens}

Probab=99.52  E-value=4.8e-14  Score=100.46  Aligned_cols=76  Identities=26%  Similarity=0.617  Sum_probs=66.0

Q ss_pred             eeEEc--ceecCCCC--C---cccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCC
Q psy6641           3 NMKCH--NLVLPEVS--E---YEECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIP   74 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~---~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p   74 (87)
                      .++|+  |+|++..|  +   .+.|+.|+.+.||.+... ...|.+|++|+|+|++||.|.|+..++|+.+|+|+.+ .|
T Consensus       807 ~~~C~~~g~Ws~~~P~C~~~~~~~C~~pp~~~ng~~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~-~p  885 (951)
T 2gsx_A          807 VIRCHTDNTWVPGVPTCIKKAFIGCPPPPKTPNGNHTGGNIARFSPGMSILYSCDQGYLLVGEALLLCTHEGTWSQP-AP  885 (951)
T ss_pred             eeEEccCCeECCCCceeecccccCCCCCCcCCcceeeCCccccccCCCEEEEEcCCCCEECCCCeeEECCCCEECCC-Cc
Confidence            57898  99998877  2   257999999999988653 3568899999999999999999999999999999998 89


Q ss_pred             eEeec
Q psy6641          75 FCVRW   79 (87)
Q Consensus        75 ~C~~~   79 (87)
                      .|++.
T Consensus       886 ~C~~~  890 (951)
T 2gsx_A          886 HCKEV  890 (951)
T ss_pred             eeeee
Confidence            99864

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.51  E-value=4.1e-14  Score=95.84  Aligned_cols=75  Identities=27%  Similarity=0.552  Sum_probs=65.5

Q ss_pred             eeEEc--c---eecCCCC--CcccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCC------CEEcCCCceeeCCC---
Q psy6641           3 NMKCH--N---LVLPEVS--EYEECRFPGAPAHSSIVFS-NETLSPGTVATYACERG------FELLGPSRRVCDKT---   65 (87)
Q Consensus         3 ~~~C~--g---~W~~~~~--~~~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~g------y~l~G~~~~~C~~~---   65 (87)
                      .++|+  |   .|+...|  +.+.|+.|+.+.||.+... ...|.+|++|+|+|++|      |.|.|+..++|+.+   
T Consensus       102 ~~~C~~~g~~~~Ws~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~~g~~v~y~C~~G~~~~~~y~l~G~~~~~C~~~~~~  181 (551)
T 1ntl_A          102 SAVCVITDQSVDWDTEAPICEWIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGE  181 (551)
T ss_pred             cEEEEeCCCcceeCCCCCCCCCCCCCCCCcCCCCcEecCCCCccccCCEEEEEeCCCCCccceeEecCCcceEeeCCCCc
Confidence            57898  5   7998777  5678999999999988764 35788999999999999      99999999999987   


Q ss_pred             -CccCCCCCCeEee
Q psy6641          66 -GQWMPEGIPFCVR   78 (87)
Q Consensus        66 -g~Ws~~~~p~C~~   78 (87)
                       |+|+.+ .|.|++
T Consensus       182 ~G~Ws~~-~P~C~~  194 (551)
T 1ntl_A          182 IGVWSGP-PPQCIE  194 (551)
T ss_pred             CCEECCC-CCcccC
Confidence             999997 999985

>2a55_A C4B-binding protein; complement, SCR, CCP module, immune system; NMR {Homo sapiens}

Probab=99.49  E-value=5.5e-15  Score=84.44  Aligned_cols=59  Identities=20%  Similarity=0.515  Sum_probs=52.5

Q ss_pred             ccCCCCCCCCCeEEEec---CCCcCCCCEEEEEcCCCC-EEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFS---NETLSPGTVATYACERGF-ELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~---~~~~~~g~~~~~~C~~gy-~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+...   ...|.+|++|+|+|++|| .|.|+..++|+.+|+|+.  .|.|++
T Consensus         1 v~C~~Pp~~~ng~~~~~~~~~~~y~~g~~v~y~C~~Gy~~l~G~~~~~C~~~G~Ws~--~p~C~~   63 (133)
T 2a55_A            1 MNCGPPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSHSTQTLTCNSDGEWVY--NTFCIY   63 (133)
T ss_dssp             CCCCSCCCCTTCBCCSSCTTCSCCCTTCCCCCBCCTTEESCCSCCCCEECSSSSEEC--CCCSEE
T ss_pred             CcCCCCCCCCcceEccccccCCccCCCCEEEEEeCCCCcccCCCCEEEECCCCeECC--CCcCcc
Confidence            47999999999998763   467899999999999999 788999999999999997  699985

>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain, immune system; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=98.68  Aligned_cols=74  Identities=28%  Similarity=0.538  Sum_probs=66.4

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecC-CCcCCCCEEEEEcCCC------CEEcCCCceeeC----CCCc
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVCD----KTGQ   67 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~g------y~l~G~~~~~C~----~~g~   67 (87)
                      .++|+  +.|+...|  +.+.|+.|+.+.||.+.... ..|.+|++|+|+|++|      |.|.|+..++|+    .+|+
T Consensus       486 ~~~C~~~g~Ws~~~p~C~~i~C~~pp~i~nG~~~~~~~~~~~~g~~v~y~C~~g~~~~~~y~l~G~~~~~C~~~~~~~G~  565 (951)
T 2gsx_A          486 YQECQGTIPWFMEIRLCKEITCPPPPVIYNGAHTGSSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGT  565 (951)
T ss_pred             eeEccCcccccCCCceecceeCCCCCCCCCCeEeCCCCCccccCCEEEEEcCCCCCCCceEEEecCceEEecccCCCCcc
Confidence            46888  89998888  57899999999999998654 4599999999999999      999999999999    8999


Q ss_pred             cCCCCCCeEe
Q psy6641          68 WMPEGIPFCV   77 (87)
Q Consensus        68 Ws~~~~p~C~   77 (87)
                      |+.+ .|.|+
T Consensus       566 Ws~~-~P~C~  574 (951)
T 2gsx_A          566 WSGP-APLCK  574 (951)
T ss_pred             CcCC-Cceee
Confidence            9997 99996

>1haq_A Complement factor H; immunology, glycoprotein, complement alternate pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A 3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A

Probab=99.44  E-value=2.2e-13  Score=99.17  Aligned_cols=73  Identities=21%  Similarity=0.454  Sum_probs=65.4

Q ss_pred             eeEEc-ceecCCCC----CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641           3 NMKCH-NLVLPEVS----EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus         3 ~~~C~-g~W~~~~~----~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      .++|+ |.|+. .|    +.+.|+.|+.+.||.+......|.+|++|+|+|+.||.|.|+..++| .+|+|+ + .|.|+
T Consensus       652 ~~~C~~G~Ws~-~P~C~~~~~~C~~~~~~~nG~~~~~~~~~~~g~~~~~~C~~Gy~l~G~~~~~C-~~G~Ws-~-~p~C~  727 (1213)
T 1haq_A          652 KIQCVDGEWTT-LPVCIVEESTCGDIPELEHGWAQLSSPPYYYGDSVEFNCSESFTMIGHRSITC-IHGVWT-Q-LPQCV  727 (1213)
T ss_pred             eEEeCCCeeCC-CcccccccCcCCCCCcCCCCeeccCCCcccCCCEEEEEeCCCceeCCCCeEEC-CCCCcc-C-ccccc
Confidence            57999 99998 66    24689999999999998776789999999999999999999999999 899999 6 89998


Q ss_pred             ec
Q psy6641          78 RW   79 (87)
Q Consensus        78 ~~   79 (87)
                      +.
T Consensus       728 ~~  729 (1213)
T 1haq_A          728 AI  729 (1213)
T ss_pred             cc
Confidence            65

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=99.44  E-value=4.9e-13  Score=87.67  Aligned_cols=77  Identities=19%  Similarity=0.473  Sum_probs=64.3

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCC-EEcCC-CceeeCCCCccCC----
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFS--NETLSPGTVATYACERGF-ELLGP-SRRVCDKTGQWMP----   70 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy-~l~G~-~~~~C~~~g~Ws~----   70 (87)
                      .++|+  |+|+...|  +.+.|+.|+.+.||.+...  ...+.+|++|+|+|++|| .|.|. ..++|..+|.|+.    
T Consensus        62 ~~~C~~~g~Ws~~~p~C~~~~C~~p~~~~ng~~~~~~~~~~~~~g~~v~~~C~~gyy~l~~~~~~~~C~~~g~W~~~~~~  141 (403)
T 1zjk_A           62 TAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGE  141 (403)
T ss_dssp             EEEBCSSSSBSSCCCEEEECBCCSCCCCTTEEEEESSSTTCCBTTCEEEEEECTTTEEEESSCSEEEECTTSCEEETTCC
T ss_pred             eeEcCCCCEeCCCCCCcccccCCCCCCcCCccEEEccCCCCCccCCeEEEeCCCchhheecCCCCEEECCCcccccccCC
Confidence            58999  99998888  5678999999999998753  356888999999999996 67776 7899999999986    


Q ss_pred             -CCCCeEeecc
Q psy6641          71 -EGIPFCVRWC   80 (87)
Q Consensus        71 -~~~p~C~~~~   80 (87)
                       . .|.|.+.|
T Consensus       142 ~~-~p~C~~~C  151 (403)
T 1zjk_A          142 KS-LPVCEPVC  151 (403)
T ss_dssp             CS-CCEEEECC
T ss_pred             cc-CCCCCCCC
Confidence             4 78887654

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens}

Probab=99.43  E-value=3.6e-13  Score=101.22  Aligned_cols=74  Identities=34%  Similarity=0.701  Sum_probs=65.3

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecC-CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      .++|+  |+|++..|  +.+ |+.|+.+.||.+.... ..|.+|++|+|+|++||.|.|+..++|+.+|+|+.. .|.|+
T Consensus      1136 ~~~C~~~g~Ws~~~P~C~~~-C~~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~G~~~~~C~~~G~Ws~~-~P~C~ 1213 (1931)
T 2q7z_A         1136 RVKCQALNKWEPELPSCSRV-CQPPPEILHGEHTPSHQDNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPE-APRCA 1213 (1931)
T ss_pred             eeEECCCCeECCCCCccccc-cCCCCccccCcccccCCcccCCCCEEEEECCCCCEeCCCceeEEcCCCeECCC-Cceee
Confidence            57899  99998887  344 9999999999886543 578899999999999999999999999999999987 99998


Q ss_pred             e
Q psy6641          78 R   78 (87)
Q Consensus        78 ~   78 (87)
                      +
T Consensus      1214 ~ 1214 (1931)
T 2q7z_A         1214 V 1214 (1931)
T ss_pred             e
Confidence            5

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.42  E-value=3.8e-13  Score=87.97  Aligned_cols=60  Identities=22%  Similarity=0.468  Sum_probs=50.8

Q ss_pred             ccCCCCCCCCC-eEEEecCCCcCCCCEEEEEcCCCCEEc-CC-----CceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAH-SSIVFSNETLSPGTVATYACERGFELL-GP-----SRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~-g~~~~~~~~~~~g~~~~~~C~~gy~l~-G~-----~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.| +.+...+..|.+|++|+|+|++||.|. |.     ..++|+.+|+|+.. .|.|+.
T Consensus         1 i~C~~p~~~~n~~~~~~~~~~y~~g~~v~~~C~~Gy~l~~g~~~~~s~~~~C~~~g~W~~~-~p~C~~   67 (399)
T 1gpz_A            1 IKCPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA-MPRCKI   67 (399)
T ss_dssp             CCBCCCCCSSTTEEEESCCSSBCTTCEEEEEECTTEEEESSSCEESCEEEEBCTTSCBSSC-CCEEEE
T ss_pred             CCCcCCCCCCCCCCcCCCCCceecCCEEEEEecCCcEEecCCcccceeeEecCCCCcccCc-CCceee
Confidence            47999999999 566666678999999999999999996 43     35679999999997 999984

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=99.41  E-value=7.6e-14  Score=99.36  Aligned_cols=71  Identities=24%  Similarity=0.431  Sum_probs=61.9

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCe
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF   75 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~   75 (87)
                      .++|+  |+|+...|  +.+.|+.|+.+.|+.+......|.+|++|+|.|++||.|.|+..++|+.+ +|+++ +|.
T Consensus       662 ~~~C~~~G~Ws~~~P~C~~v~C~~P~~~~~~~~~~~~~~y~~gs~v~y~C~~Gy~l~G~~~~~C~~~-~Ws~~-~P~  736 (913)
T 3t5o_A          662 YFRCLPDGTWRQGDVECQRTECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGN-SWTPP-ISN  736 (913)
T ss_dssp             EEEECTTSCEECCSCEEEECEEECCCCCSSSBCSSCCSEEETTCEEECBCCTTCEESSCSEEECBTT-BCSCC-CTT
T ss_pred             ceEECCCCeEcCCCCeeccCcCCCCCCCCCcEecCCCCcccCCCEEEEEeCCCCEECCCCceEECCC-EeeCC-CCe
Confidence            57999  99998888  56789999888887775555678899999999999999999999999988 99987 765

>2q7z_A Complement receptor type 1; SCR domain, blood group antigen, complement pathway, glycoprotein, immune response, innate immunity, membrane; NMR {Homo sapiens}

Probab=99.40  E-value=7.5e-13  Score=99.51  Aligned_cols=75  Identities=25%  Similarity=0.603  Sum_probs=66.2

Q ss_pred             eeeEEc--ceecCCCC--CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCC
Q psy6641           2 VNMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIP   74 (87)
Q Consensus         2 ~~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p   74 (87)
                      ..++|+  |.|+...+  +.+.|+.|..+.||.+... ..|.+|+.|+|+|++||.|.|++.++|+.+|   +|+.+ .|
T Consensus        41 ~~~~C~~~g~W~~~~~~c~~~~C~~p~~~~nG~~~~~-~~~~~g~~v~~~C~~GY~L~G~~~~~C~~~g~~~~Ws~~-~P  118 (1931)
T 2q7z_A           41 FSIICLKNSVWTGAKDRCRRKSCRNPPDPVNGMVHVI-KGIQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNE-TP  118 (1931)
T ss_pred             ceEEeCCCCccCCCCCcccCCCCcCCCCCCCCeEEec-CCeEeCCEEEEEECCCCEEcCCccceEecCCCccccCCC-CC
Confidence            358998  99997555  6789999999999999655 4588999999999999999999999999999   89998 99


Q ss_pred             eEee
Q psy6641          75 FCVR   78 (87)
Q Consensus        75 ~C~~   78 (87)
                      .|++
T Consensus       119 ~C~~  122 (1931)
T 2q7z_A          119 ICDR  122 (1931)
T ss_pred             Eeee
Confidence            9985

>2yby_A Complement factor H; immune system, complement regulation, innate immunity, infec; 1.58A {Mus musculus}

Probab=99.36  E-value=2.4e-13  Score=76.71  Aligned_cols=59  Identities=29%  Similarity=0.653  Sum_probs=48.6

Q ss_pred             ccCCCCCCCCCeEEEec---CCCc--CCCCEEEEEcCCCCEEcCC---CceeeCCCCccCCCCCCeEeecc
Q psy6641          18 EECRFPGAPAHSSIVFS---NETL--SPGTVATYACERGFELLGP---SRRVCDKTGQWMPEGIPFCVRWC   80 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~---~~~~--~~g~~~~~~C~~gy~l~G~---~~~~C~~~g~Ws~~~~p~C~~~~   80 (87)
                      +.|+.| .+.||.+...   +..|  .+|++|+|+|++||.|.|.   ..++|+.+| |+.  .|.|+..|
T Consensus         3 ~~C~~P-~i~nG~~~~~~~~~~~yp~~~g~~v~y~C~~Gy~l~g~~~~~~~~C~~~g-Ws~--~p~C~~~C   69 (124)
T 2yby_A            3 KPCEFP-QFKYGRLYYEESLRPNFPVSIGNKYSYKCDNGFSPPSGYSWDYLRCTAQG-WEP--EVPCVRKC   69 (124)
T ss_dssp             CCBCCC-CCTTEEETTHHHHGGGCSBCTTCEEEEEECTTEECTTCSSCEEEEEETTE-EES--SSCCEEEE
T ss_pred             ccCCCC-cccCCEEEecccccccccccCCCEEEEECCCCCEeCCCCCccEEEecCCC-ccC--CCceeeEC
Confidence            579886 8999998753   2234  7899999999999999998   789999999 997  48998443

>2b5i_D Interleukin-2 receptor alpha chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 3nfp_I 3iu3_I 1z92_B 2erj_A*

Probab=99.31  E-value=2e-12  Score=78.86  Aligned_cols=59  Identities=24%  Similarity=0.511  Sum_probs=48.9

Q ss_pred             cCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCC--EEcCCCceeeCC-CC--ccCCCCCCeEeec
Q psy6641          19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGF--ELLGPSRRVCDK-TG--QWMPEGIPFCVRW   79 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy--~l~G~~~~~C~~-~g--~Ws~~~~p~C~~~   79 (87)
                      .|..|+.+.|+.+. ....|.+|++|+|.|++||  .|.|+..++|.. +|  .|+.+ .|.|+..
T Consensus       103 ~C~~PP~i~n~~l~-~~~~y~~Gs~V~Y~C~eGY~~ll~G~~~~~C~~~~G~~~WS~p-~p~C~~~  166 (217)
T 2b5i_D          103 HCREPPPWENEATE-RIYHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP-QLICTGE  166 (217)
T ss_dssp             CBCCCCCCSSCCSS-CCEECCTTCEEEEEECTTCEEEESSCSEEEEEECSSCEEECCC-CEEEEC-
T ss_pred             cCCCCCcccccccc-ccccccCCCEEEEECcCCchhcccCCcceEeecCCCccccCCC-CcceEec
Confidence            58888888998653 3467999999999999999  579999999964 45  89998 8999864

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=99.30  E-value=4.5e-12  Score=82.09  Aligned_cols=62  Identities=26%  Similarity=0.469  Sum_probs=54.8

Q ss_pred             cccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCC------ceeeCCCCccCCCCCCeEeec
Q psy6641          17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPS------RRVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~------~~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      ...|+.|..+.||.+......|.+|+.|+|+|++||+|.|..      .++|+.+|+|+.+ .|.|++.
T Consensus       279 ~~~C~~~~~p~~G~~~~~~~~~~~g~~v~~~C~~GY~l~g~~~~~~~~~~~C~~~g~Ws~~-~P~C~~~  346 (361)
T 4aqb_A          279 GNECPELQPPVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNK-IPTCKKN  346 (361)
T ss_dssp             CCEECCCCCCTTEEEESCCSSEETTCEEEEEECTTEEEEETTEEESEEEEEBCTTSCBSSC-CCEEEEC
T ss_pred             cCCCCCCCCCCCCEEecCCCCcccCCEEEEEeCCCeEEeCCCcccccCeeEECCCCeeCCC-CCeeeEE
Confidence            356999999999999887778999999999999999999875      3689999999998 9999863

>4ayi_A H factor 1, complement factor H; immune system, antigens; 2.31A {Homo sapiens} PDB: 4aye_A 4ayd_A 4aym_A 2w80_A 2w81_A 2jgw_A 2jgx_A

Probab=99.20  E-value=7.9e-12  Score=70.58  Aligned_cols=59  Identities=27%  Similarity=0.591  Sum_probs=44.8

Q ss_pred             cccCCCCCCCCCeEEEecC-----CCcCCCCEEEEEcCCCCEEcCCCc---eeeCCCCccCCCCCCeEeec
Q psy6641          17 YEECRFPGAPAHSSIVFSN-----ETLSPGTVATYACERGFELLGPSR---RVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~-----~~~~~g~~~~~~C~~gy~l~G~~~---~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      .+.|+.| .++||.+....     ..+.+|++|+|+|++||.|.|.+.   ++|+.+| |++  .|.|.+.
T Consensus         4 ~k~C~~P-~i~nG~~~~~~~~~~~~p~~~G~~v~y~C~~Gy~l~g~~~~~~~~C~~~g-Ws~--~P~C~~~   70 (125)
T 4ayi_A            4 LKPCDYP-DIKHGGLYHENMRRPYFPVAVGKYYSYYCDEHFETPSGSYWDHIHCTQDG-WSP--AVPCLRK   70 (125)
T ss_dssp             --CBCSC-CCTTEEETTHHHHGGGCSBCTTCEEEEEECTTEECTTSSSEEEEEEETTE-EES--SSCCEEE
T ss_pred             CccCcCC-ccCCCEEeccccccccccccCCCEEEEEcCCCCEECCCCccCEEEeCCCc-ccC--CCCCcCc
Confidence            4579876 57899986532     124679999999999999999753   7999887 995  5888864

>2psm_F Interleukin-15 receptor alpha chain; cytokine, glycoprotein, secreted, alternative splicing, endoplasmic reticulum, golgi apparatus, membrane; 2.19A {Mus musculus} SCOP: g.18.1.1

Probab=99.17  E-value=6.2e-11  Score=61.44  Aligned_cols=60  Identities=22%  Similarity=0.381  Sum_probs=49.6

Q ss_pred             cccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEc--CCCceeeCCCC-----ccCCCCCCeEeec
Q psy6641          17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL--GPSRRVCDKTG-----QWMPEGIPFCVRW   79 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~--G~~~~~C~~~g-----~Ws~~~~p~C~~~   79 (87)
                      .+.|+.|+..+|..+  ....|.+++.++|.|++||.-.  ++..+.|..+|     .|..+ ...|++.
T Consensus         8 ~~~C~~Pp~ve~a~~--r~~~y~v~s~vRYqC~~Gf~rr~g~s~lirC~~n~~~~~~~Wt~P-~L~CI~e   74 (78)
T 2psm_F            8 GTTCPPPVSIEHADI--RVKNYSVNSRERYVCNSGFKRKAGTSTLIECVINKNTNVAHWTTP-SLKCIRD   74 (78)
T ss_dssp             --CCCCCCCCTTEEC--CCSCCSTTCEEECEECTTEEECTTCCCEEEEEEETTTTEEEECCC-CCCEEEC
T ss_pred             CCcCCCCCccccccc--ceeeeccCCEEEEecchhHHhhCCCCCceEEEcCCCcCcceecCC-CeEEecC
Confidence            578999999999977  4578999999999999999654  47899998775     59998 8899865

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=99.10  E-value=4.9e-10  Score=73.25  Aligned_cols=78  Identities=17%  Similarity=0.424  Sum_probs=60.9

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCC-EEcC--------CCceeeCCCCc
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIVFS--NETLSPGTVATYACERGF-ELLG--------PSRRVCDKTGQ   67 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy-~l~G--------~~~~~C~~~g~   67 (87)
                      .++|+  |+|++..|  +.+.|+.|+.+.||.+...  ...+.+++.++|.|++|| .+.+        ....+|..+|.
T Consensus        49 ~~~C~~~g~W~~~~p~C~~~~C~~p~~~~nG~~~~~~~~~~~~~~~~v~y~C~~gy~~l~~~~~~~~~~~g~~~C~~~g~  128 (399)
T 1gpz_A           49 TAVCQDDGTWHRAMPRCKIKDCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGI  128 (399)
T ss_dssp             EEEBCTTSCBSSCCCEEEECBCCSCCCCTTEEEEESSSTTCCBTTCEEEEEECTTTEEEEC-------CCCEEEECTTSS
T ss_pred             eEecCCCCcccCcCCceeeeeCCCCCCCCCcceEeecCCCCceeeEEEEEecCCchhccccccCcccccCceEEECCCce
Confidence            46798  99998888  4578999999999988653  356778999999999999 4433        46689999999


Q ss_pred             cCCC----CCCeEeecc
Q psy6641          68 WMPE----GIPFCVRWC   80 (87)
Q Consensus        68 Ws~~----~~p~C~~~~   80 (87)
                      |...    ..|.|.+.|
T Consensus       129 w~~~~~~~~~p~C~~~C  145 (399)
T 1gpz_A          129 WKNEQKGEKIPRCLPVC  145 (399)
T ss_dssp             EEESSSCSSCCEEEECC
T ss_pred             EeccccccccCCccCCC
Confidence            9752    157887644

>2z3q_B Interleukin-15 receptor alpha chain; protein-protein complex, cytokine/cytokine receptor complex; 1.85A {Homo sapiens} SCOP: g.18.1.1 PDB: 2z3r_B 2ers_A

Probab=98.81  E-value=7.5e-09  Score=56.10  Aligned_cols=59  Identities=25%  Similarity=0.447  Sum_probs=48.9

Q ss_pred             cccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCE-EcC-CCceeeCCC-----CccCCCCCCeEee
Q psy6641          17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFE-LLG-PSRRVCDKT-----GQWMPEGIPFCVR   78 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~-l~G-~~~~~C~~~-----g~Ws~~~~p~C~~   78 (87)
                      .+.|+.|+..+|..+  ....|.+|+.++|.|+.||. +.| ++.+.|..+     ..|..+ ...|+.
T Consensus         5 ~~~C~~Pp~~EHad~--rv~~y~v~s~vRYqC~~Gykrkagtsali~Ck~~~~~g~~~WT~P-~LkCI~   70 (107)
T 2z3q_B            5 SITCPPPMSVEHADI--WVKSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVAHWTTP-SLKCIR   70 (107)
T ss_dssp             CCBCCCCCCCTTEEC--CCSCCBTTCEEECEECTTEEECTTCCCEEEEEEETTTTEEEECCC-CCCEEE
T ss_pred             CccCCCCCCcccccc--eeEEeccCCEEEEecchhhhhhcCCCCccEEEecccCCcceecCC-CeEEec
Confidence            468999999999887  34679999999999999995 454 788999744     579998 899994

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=98.76  E-value=2e-08  Score=64.44  Aligned_cols=61  Identities=26%  Similarity=0.603  Sum_probs=48.9

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCC-EEcCC--CceeeCCCCccCC-----CCCCeEeecc
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGF-ELLGP--SRRVCDKTGQWMP-----EGIPFCVRWC   80 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy-~l~G~--~~~~C~~~g~Ws~-----~~~p~C~~~~   80 (87)
                      ++|+.|+.+.||.+... ....+++.++|.|.++| .|.+.  ...+|..+|.|..     . .|.|.+.|
T Consensus         2 v~C~~p~~~~~g~~~~~-~~~~~~s~~~~~C~~~yy~~~~~~~~~~~C~~~g~w~~~~~~~~-~~~c~~~C   70 (333)
T 1elv_A            2 LDCGIPESIENGKVEDP-ESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPE-LPKCVPVC   70 (333)
T ss_dssp             CBCCSCCCCTTEEECCC-SCCBTTCEEEEEECTTTEEEC--CCSEEEECTTSCEEBTTTBTS-CCCEEECC
T ss_pred             CCCCCCCcccCCceecC-CCCccceeEEEECCCCeEeeecCCCceEEECCCCeEcccccccc-cccccCCc
Confidence            68999999999998743 35667999999999996 66665  7899999999986     5 78898754

>2b5i_D Interleukin-2 receptor alpha chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: g.18.1.1 g.18.1.1 PDB: 3nfp_I 3iu3_I 1z92_B 2erj_A*

Probab=98.70  E-value=4.4e-08  Score=59.79  Aligned_cols=57  Identities=21%  Similarity=0.426  Sum_probs=44.1

Q ss_pred             cC-CCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcC--CCceeeCCCC---ccCCCCCCeEeec
Q psy6641          19 EC-RFPGAPAHSSIVFSNETLSPGTVATYACERGFELLG--PSRRVCDKTG---QWMPEGIPFCVRW   79 (87)
Q Consensus        19 ~C-~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G--~~~~~C~~~g---~Ws~~~~p~C~~~   79 (87)
                      .| +.||.+.|+.+.  ...|..|++|.|.|+.||.+.+  +..++|..++   .|+.  .+.|.+.
T Consensus         2 ~C~g~PP~l~nA~~~--~~~Y~~Gt~V~Y~C~~Gf~r~~~~s~~i~C~~~~~~~~Wt~--~~fC~~~   64 (217)
T 2b5i_D            2 LCDDDPPEIPHATFK--AMAYKEGTMLNCECKRGFRRIKSGSLYMLCTGNSSHSSWDN--QCQCTSS   64 (217)
T ss_dssp             CCCSCCCCCTTEEEE--CSSBCTTCEEECCCCTTEEECTTCCSEEEBC-----CCBSC--CCCEEEC
T ss_pred             CCCCCCCCCcccccc--CccCCCCCEEEEECCCCceeCCCCCceEEecCCCCcccccC--Cceeecc
Confidence            47 778889998864  4679999999999999998874  6789997555   4986  4788653

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=98.22  E-value=2.4e-06  Score=55.29  Aligned_cols=55  Identities=22%  Similarity=0.498  Sum_probs=42.0

Q ss_pred             cccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEc--CCCceeeCCCCccCCC----CCCeEeecc
Q psy6641          17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPE----GIPFCVRWC   80 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~--G~~~~~C~~~g~Ws~~----~~p~C~~~~   80 (87)
                      ...|+.|+.++||.+..         .++|+|++.|.|.  |+...+|.++|+|...    .+|.|++.|
T Consensus        30 ~~~c~~p~~~~~g~~~~---------~i~y~C~~~y~~~~~~~~~~~c~~~g~w~~~~~~~~lp~C~p~C   90 (347)
T 4f4o_C           30 DDSCPKPPEIPKGYVEH---------MVRYHCQTYYKLRTAGDGVYTLDSNKQWTNKVTGEKLPECEAVC   90 (347)
T ss_dssp             ---CCCCCCBTTEEEEE---------EEEEEECTTEEEECSSCSEEEECTTSCEEBTTTBTCCCEEEECC
T ss_pred             CCcCCCCCCCCCceece---------eeEEcCCCccEeccCCCCCEEECCCCCEeCCCCCccCCCccCCC
Confidence            34799999999998742         3899999999875  5677899999999753    158998764

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=98.00  E-value=4e-05  Score=49.12  Aligned_cols=62  Identities=19%  Similarity=0.485  Sum_probs=47.0

Q ss_pred             cCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCC-EEcCC--------CceeeCCCCccCCC----CCCeEeecc
Q psy6641          19 ECRFPGAPAHSSIVFS--NETLSPGTVATYACERGF-ELLGP--------SRRVCDKTGQWMPE----GIPFCVRWC   80 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy-~l~G~--------~~~~C~~~g~Ws~~----~~p~C~~~~   80 (87)
                      +|..|..+.||.+.+.  .....+++.++|.|+..| .|.+.        ...+|..+|.|...    ..|.|.+.|
T Consensus         1 ~c~~p~~~~~g~~~~~~~~~~~~~~~~~~y~c~~~~~~~~~~~~~~~~~~~~~~C~~~~~w~~~~~~~~~~~c~~~C   77 (329)
T 1md8_A            1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRCLPVC   77 (329)
T ss_dssp             CCCSCCCCTTEEEEESSSTTCCSTTCEEEEEECTTTEEECC--------CCEEEECTTSSEECSSCCSSCCCEEECC
T ss_pred             CCCCCCCcCCCceeeecCCCCcccceEEEeecCCcceEeeccCCccccCCCceEECCCccccCccCccccCCCCCCC
Confidence            5899999999998763  245778999999999876 56654        56899999999752    157777654

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=95.61  E-value=0.0037  Score=40.29  Aligned_cols=30  Identities=7%  Similarity=0.190  Sum_probs=14.5

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCCCCCCeEEE
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPGAPAHSSIV   32 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~~~~~g~~~   32 (87)
                      .++|+  |+|+...|  +.+.|+.|..+.||.+.
T Consensus       327 ~~~C~~~g~Ws~~~P~C~~~~Cg~p~~~~ng~vt  360 (361)
T 4aqb_A          327 QIECLKDGTWSNKIPTCKKNEIDLESELKSEQVT  360 (361)
T ss_dssp             EEEBCTTSCBSSCCCEEEECC-------------
T ss_pred             eeEECCCCeeCCCCCeeeEEeCCCCCCCCCCccc
Confidence            46898  99999988  67899999999999864

>2yra_A Seizure 6-like protein isoform 3; disulfide bond, sushi domain, SCR, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.55  E-value=0.018  Score=28.83  Aligned_cols=22  Identities=18%  Similarity=0.193  Sum_probs=17.9

Q ss_pred             eeEEc--ceecCCCC--CcccCCCCC
Q psy6641           3 NMKCH--NLVLPEVS--EYEECRFPG   24 (87)
Q Consensus         3 ~~~C~--g~W~~~~~--~~~~C~~p~   24 (87)
                      .++|+  |+|+...|  +.+.|+.|+
T Consensus        47 ~~~C~~~g~Ws~~~P~C~~v~C~~P~   72 (74)
T 2yra_A           47 TLTCQWDLSWSSDPPFCEKTEESGPS   72 (74)
T ss_dssp             EEEBCTTSCBSSCCCEEEECSCCSSS
T ss_pred             ceEECCCCEECCCCCEEeecCCcCCC
Confidence            57999  89998888  577898775

>3n7s_A Calcitonin gene-related peptide type 1 receptor; GPCR, class B GPCR, antagonist, olcegepant, telcagepant, MIG membrane protein; HET: 3N6 3N7; 2.10A {Homo sapiens} PDB: 3n7r_A* 3n7p_A* 3aqf_B

Probab=90.79  E-value=0.16  Score=28.02  Aligned_cols=33  Identities=24%  Similarity=0.628  Sum_probs=23.8

Q ss_pred             cCCCCEEEEEcCCCCE---EcCCCceeeCCCCccCC
Q psy6641          38 LSPGTVATYACERGFE---LLGPSRRVCDKTGQWMP   70 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~---l~G~~~~~C~~~g~Ws~   70 (87)
                      -..|++|...|..-|.   -.|...+.|+.+|+|+.
T Consensus        60 t~~G~~v~~~CP~~~~~f~~~g~v~R~C~~~G~W~~   95 (115)
T 3n7s_A           60 VAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNWFR   95 (115)
T ss_dssp             EETTCEEEEECCSSSTTCCTTSEEEEEBCTTSCBCB
T ss_pred             CCCCCEEEecCchhhcCCCCCCcEEeecCCCCCccc
Confidence            4468889999976432   23456789999999974

>1u34_A CRFR2B, corticotropin releasing factor receptor 2; beta sheets and loops, signaling protein; NMR {Mus musculus} SCOP: g.76.1.1 PDB: 2jnd_A* 2jnc_A

Probab=88.22  E-value=0.17  Score=28.09  Aligned_cols=33  Identities=24%  Similarity=0.573  Sum_probs=24.6

Q ss_pred             cCCCCEEEEEcCCCCE-----EcCCCceeeCCCCccCC
Q psy6641          38 LSPGTVATYACERGFE-----LLGPSRRVCDKTGQWMP   70 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~Ws~   70 (87)
                      -..|++|...|..-|.     ..|...+.|+.+|+|+.
T Consensus        60 t~~G~~v~~pCP~~~~~~~~~~~g~vsR~C~~nG~W~~   97 (119)
T 1u34_A           60 SAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWAS   97 (119)
T ss_dssp             CCTTCBCCCCSSCTTSSSCCCCCCCCCCBCCTTSCCCS
T ss_pred             CCCCCEEEecCccccCCcccCCCCeeecCCCCCCcCCC
Confidence            3457888888877543     24567789999999975

>4ers_A GL-R, glucagon receptor; class-B GPCR, FAB, glycosylation, extra-C immune system; HET: NAG; 2.64A {Homo sapiens}

Probab=88.10  E-value=0.23  Score=26.44  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             cCCCCEEEEEcCCCCE-----EcCCCceeeCCCCccCC
Q psy6641          38 LSPGTVATYACERGFE-----LLGPSRRVCDKTGQWMP   70 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~Ws~   70 (87)
                      -..|+++...|..-+.     ..|...+.|..+|+|..
T Consensus        44 t~~G~~v~~~CP~~~~~~~~~~~~~a~R~C~~~G~W~~   81 (96)
T 4ers_A           44 TPANTTANISCPWYLPWHHKVQHRFVFKRCGPDGQWVR   81 (96)
T ss_dssp             EETTEEEEEECCTTSTTTTTSTTCEEEEEECTTSCBCB
T ss_pred             CCCCCEEECCCChhhCcCccCCccceeeecCCCCeEeC
Confidence            3458888889975322     23446789999999964

>2l27_A Seven transmembrane helix receptor; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}

Probab=87.63  E-value=0.095  Score=27.26  Aligned_cols=31  Identities=23%  Similarity=0.466  Sum_probs=21.1

Q ss_pred             CCCEEEEEcCCCCE-----EcCCCceeeCCCCccCC
Q psy6641          40 PGTVATYACERGFE-----LLGPSRRVCDKTGQWMP   70 (87)
Q Consensus        40 ~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~Ws~   70 (87)
                      .|+++...|..-|.     ..+...+.|+++|+|+.
T Consensus        36 ~G~~v~~~CP~~~~~~~~~~~~~~~R~C~~~G~W~~   71 (84)
T 2l27_A           36 AGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAA   71 (84)
T ss_dssp             SSBCCBCCCCSSBTTBCCCCSSCCBCCEETTTEECS
T ss_pred             CCCEEEecCchhhcCcccCcCCceecCCCCCCcCCC
Confidence            35566666665332     34567899999999975

>3c5t_A Glucagon-like peptide 1 receptor; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} PDB: 3c59_A* 3iol_A*

Probab=86.67  E-value=0.38  Score=26.66  Aligned_cols=32  Identities=25%  Similarity=0.581  Sum_probs=23.0

Q ss_pred             cCCCCEEEEEcCCCCE-----EcCCCceeeCCCCccC
Q psy6641          38 LSPGTVATYACERGFE-----LLGPSRRVCDKTGQWM   69 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~Ws   69 (87)
                      -..|++|...|..-+.     -.|...+.|+++|+|.
T Consensus        52 t~~G~~v~~~CP~~~~~~~~~~~~~~~R~C~~~G~W~   88 (122)
T 3c5t_A           52 GEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWL   88 (122)
T ss_dssp             BCTTEEEEEECCTTSTTGGGCTTCEEEEEECTTSSBC
T ss_pred             CCCCcEEEeeCcchhhCccccccceEecCCCCCCccc
Confidence            4458888888877542     2344578999999993

>2jod_A Pituitary adenylate cyclase-activating polypeptide type I receptor; protein/peptide complex, signaling protein; NMR {Homo sapiens} SCOP: g.76.1.1

Probab=86.37  E-value=0.66  Score=25.06  Aligned_cols=33  Identities=24%  Similarity=0.608  Sum_probs=22.8

Q ss_pred             cCCCCEEEEEcCCCCEEc------CCCceeeCCCCccCCC
Q psy6641          38 LSPGTVATYACERGFELL------GPSRRVCDKTGQWMPE   71 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~l~------G~~~~~C~~~g~Ws~~   71 (87)
                      -..|++|...|..-|...      |...+.|+++| |+..
T Consensus        51 t~~G~~v~~~CP~~~~~~~~~~~~g~v~R~C~~~G-Ws~~   89 (106)
T 2jod_A           51 AHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG-WSEP   89 (106)
T ss_dssp             CBTTCCEEECCSCSSCCCSCCSCCSCEEECBCSSC-BCCC
T ss_pred             CCCCCEEEecCcchhcCCCCcCcCCeEEecCCccc-CCCC
Confidence            345777888887755322      34568899999 9865

>2x57_A Vasoactive intestinal polypeptide receptor 2; G-protein coupled receptor, circadian rhythm, MALE reproduct hormone binding, growth, transducer; 2.10A {Homo sapiens}

Probab=86.17  E-value=0.25  Score=27.29  Aligned_cols=33  Identities=24%  Similarity=0.557  Sum_probs=24.4

Q ss_pred             cCCCCEEEEEcCCCCE----EcCCCceeeCCCCccCCC
Q psy6641          38 LSPGTVATYACERGFE----LLGPSRRVCDKTGQWMPE   71 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~----l~G~~~~~C~~~g~Ws~~   71 (87)
                      -..|+++...|..-|.    ..|...+.|+++| |+..
T Consensus        63 t~~G~~v~~~CP~~~~~~~~~~g~v~R~C~~~G-Ws~~   99 (116)
T 2x57_A           63 ANVGETVTVPCPKVFSNFYSKAGNISKNCTSDG-WSET   99 (116)
T ss_dssp             BCTTCEEEEECCGGGGGGBSSCCEEEEEEETTE-ECCC
T ss_pred             CCCCCEEEecCcccccCccCCCCeEEeeCCccc-CCCC
Confidence            4458889999987543    2355678999999 9864

>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR, incretin, hormone-GPCR complex, extracellular domain, ligand binding domain, ECD; HET: QKH; 1.90A {Homo sapiens}

Probab=85.70  E-value=0.25  Score=27.98  Aligned_cols=34  Identities=26%  Similarity=0.441  Sum_probs=24.9

Q ss_pred             CcCCCCEEEEEcCCCCEE-----cCCCceeeCCCCccCC
Q psy6641          37 TLSPGTVATYACERGFEL-----LGPSRRVCDKTGQWMP   70 (87)
Q Consensus        37 ~~~~g~~~~~~C~~gy~l-----~G~~~~~C~~~g~Ws~   70 (87)
                      .-..|+++...|..-+..     .|...+.|+++|+|+.
T Consensus        70 ~t~~G~~v~~~CP~~~~~~~~~~~g~vsR~C~~dG~W~~  108 (135)
T 2qkh_A           70 YAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQWGL  108 (135)
T ss_dssp             CBCTTEEEEEECCTTSTTHHHHTTCEEEEEECTTSCBCS
T ss_pred             CCCCCCEEEecCchhhcCcccCCCceEeccCCCCCCCCC
Confidence            344688999999886532     3455789999999973

>2xdg_A Growth hormone-releasing hormone receptor; signaling protein, membrane protein; 1.95A {Homo sapiens}

Probab=80.62  E-value=0.51  Score=24.84  Aligned_cols=33  Identities=30%  Similarity=0.555  Sum_probs=22.6

Q ss_pred             cCCCCEEEEEcCCCCE----EcCCCceeeCCCCccCCC
Q psy6641          38 LSPGTVATYACERGFE----LLGPSRRVCDKTGQWMPE   71 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~----l~G~~~~~C~~~g~Ws~~   71 (87)
                      -..|+++...|..-|.    ..|...+.|+.+| |+..
T Consensus        37 t~~G~~v~~~CP~~~~~~~~~~~~v~R~C~~~G-W~~~   73 (92)
T 2xdg_A           37 AGSGEWVTLPCPDFFSHFSSESGAVKRDCTITG-WSEP   73 (92)
T ss_dssp             BCTTEEEEECCCGGGGGTCSSCCCEEEEEETTE-ECCC
T ss_pred             CCCCCEEEecCcchhccccccCCeEecCCCccc-CCCC
Confidence            3457778888876543    2345678999999 8764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d2ok5a3	61	g.18.1.1 (A:77-137) Complement factor B {Human (Ho	4e-11
d1ly2a2	63	g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Hu	4e-11
d2ok5a2	62	g.18.1.1 (A:138-199) Complement factor B {Human (H	6e-10
d2o39c2	64	g.18.1.1 (C:63-126) CD46 (membrane cofactor protei	1e-09
d1hcca_	59	g.18.1.1 (A:) Factor H, 15th and 16th modules {Hum	2e-09
d1h03p2	63	g.18.1.1 (P:67-129) Complement decay-accelerating	2e-09
d1g40a4	59	g.18.1.1 (A:185-243) Complement control protein {V	2e-09
d1quba4	60	g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (	3e-09
d1g40a3	58	g.18.1.1 (A:127-184) Complement control protein {V	6e-09
d1quba2	58	g.18.1.1 (A:63-120) beta2-glycoprotein I {Human (H	8e-09
d1quba3	63	g.18.1.1 (A:121-183) beta2-glycoprotein I {Human (	2e-08
d1ly2a1	67	g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Huma	5e-08
d1h03p1	62	g.18.1.1 (P:5-66) Complement decay-accelerating fa	7e-08
d1g40a2	62	g.18.1.1 (A:65-126) Complement control protein {Va	2e-07
d1quba1	62	g.18.1.1 (A:1-62) beta2-glycoprotein I {Human (Hom	2e-07
d1hfia_	62	g.18.1.1 (A:) Factor H, 15th and 16th modules {Hum	3e-07
d2o39c1	62	g.18.1.1 (C:1-62) CD46 (membrane cofactor protein,	4e-07
d1ppqa_	68	g.18.1.1 (A:) Complement receptor 1, cr1 {Human (H	5e-07
d1srza_	68	g.18.1.1 (A:) GABA-B receptor 1 {Rat (Rattus norve	2e-05
d1ok3a2	64	g.18.1.1 (A:65-128) Complement decay-accelerating	3e-05
d1gkga2	70	g.18.1.1 (A:1023-1092) Complement receptor 1, cr1	9e-05
d1elva2	68	g.18.1.1 (A:342-409) Complement C1S protease domai	1e-04
d1gpza2	68	g.18.1.1 (A:290-357) Complement C1R protease domai	2e-04
d1gkna1	64	g.18.1.1 (A:897-960) Complement receptor 1, cr1 {H	4e-04
d1q3xa2	75	g.18.1.1 (A:366-440) Mannan-binding lectin serine	7e-04
d2ok5a4	68	g.18.1.1 (A:9-76) Complement factor B {Human (Homo	0.004

>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 4e-11
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          C  P    +      +   +     ++ C  G+ L G + R C   G+W  +    C
Sbjct: 2  CPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ-TAIC 57

>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 2, cr2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 4e-11
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          Y  C  P  P    I  S      G   T+AC+  F + G     C     W P  +P C
Sbjct: 2  YSSCPEPIVPGGYKIRGST-PYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTRLPTC 60

Query: 77 VR 78
          V 
Sbjct: 61 VS 62

>d2ok5a2 g.18.1.1 (A:138-199) Complement factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (115), Expect = 6e-10
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 3/62 (4%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW 79
          C  PG P  +               TY C RG  L G  RR C + G W     P C   
Sbjct: 3  CSNPGIPIGTRK--VGSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGT-EPSCQDS 59

Query: 80 CT 81
            
Sbjct: 60 FM 61

>d2o39c2 g.18.1.1 (C:63-126) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: CD46 (membrane cofactor protein, MCP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 1e-09
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIP 74
          E C +   P +   V +N T   G    + C  G+ L+G     C        W  +  P
Sbjct: 1  ETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGK-PP 59

Query: 75 FCVR 78
           C +
Sbjct: 60 ICEK 63

>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Factor H, 15th and 16th modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 2e-09
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C+ P   +H  +   +++   G   TY C  GF + GP+   C    +W     P C+
Sbjct: 5  CKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEKW--SHPPSCI 59

>d1h03p2 g.18.1.1 (P:67-129) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 2e-09
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
          C  P    +  I    +        TYAC +GF ++G     C   +  G+W     P C
Sbjct: 3  CPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPEC 61

>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia virus [TaxId: 10245]} Length = 59

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

 Score = 46.5 bits (110), Expect = 2e-09
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C  P             + S      + C+ G++L G S   C     W PE +P CV
Sbjct: 3  CPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPE-LPKCV 59

>d1quba4 g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 3e-09
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 19 ECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          +C FP  P +  + +    TL     AT+ C  G+ L GP    C K G W    +P C
Sbjct: 2  KCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNW--SAMPSC 58

>d1g40a3 g.18.1.1 (A:127-184) Complement control protein {Vaccinia virus [TaxId: 10245]} Length = 58

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

 Score = 45.3 bits (107), Expect = 6e-09
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          C+ P + ++       +  + G+V TY+C  G+ L+G S  +C   G+W     P C
Sbjct: 3  CQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGEW--SDPPTC 56

>d1quba2 g.18.1.1 (A:63-120) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 8e-09
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          C F G   + ++     T       +++C  GF L G     C + G+W PE +P C
Sbjct: 3  CPFAGILENGAV--RYTTFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVC 56

>d1quba3 g.18.1.1 (A:121-183) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-08
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 6/61 (9%)

Query: 20 CRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPF 75
          C  P  P  +++                A + C     + G     C   G W    +P 
Sbjct: 3  CPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNW--TKLPE 60

Query: 76 C 76
          C
Sbjct: 61 C 61

>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 2, cr2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 5e-08
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
          C  P    +  I + +  ++ GTV  Y+C   F L+G    +C       G W     P 
Sbjct: 4  CGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APK 62

Query: 76 C 76
          C
Sbjct: 63 C 63

>d1h03p1 g.18.1.1 (P:5-66) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 7e-08
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFC 76
          C  PG   +  I         G   +++C  G++L G +   C  +G   QW    +P C
Sbjct: 3  CPNPGEIRNGQIDVPGGI-LFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPEC 60

>d1g40a2 g.18.1.1 (A:65-126) Complement control protein {Vaccinia virus [TaxId: 10245]} Length = 62

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

 Score = 41.9 bits (98), Expect = 2e-07
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 7/61 (11%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPF 75
          C  P    +  +      +  G+  TY+C  G+ L+G S+  C      +  W PE  P 
Sbjct: 3  CPSPRDIDNGQLDIGG--VDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE-API 59

Query: 76 C 76
          C
Sbjct: 60 C 60

>d1quba1 g.18.1.1 (A:1-62) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-07
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELL-GPSRRVCDKTGQWMPEGIPFCV 77
          C  P     S++V       PG   TY+C+ G+    G  + +C  TG W       C 
Sbjct: 4  CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPIN-TLKCT 61

>d1hfia_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Factor H, 15th and 16th modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 3e-07
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 20 CRFPGAPAHSSIVFSN---ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
          C  P    H +I  S    E+ + GT  +Y CE GF +   +   C   G+W     P C
Sbjct: 5  CSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTC-YMGKW--SSPPQC 61

>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: CD46 (membrane cofactor protein, MCP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 4e-07
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)

Query: 20 CRFPGAPAHSSIVFSNET-LSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIPFC 76
          C  P       ++   +     G    Y C++G+  +    +  +CD+   W+P     C
Sbjct: 1  CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDAC 60

Query: 77 VR 78
           R
Sbjct: 61 YR 62

>d1ppqa_ g.18.1.1 (A:) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 1, cr1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 5e-07
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC---DKTGQWMPEGIPFC 76
          C+ P  P +  +    +    G+  TY+C  G  L+G S   C     T  W  +  P C
Sbjct: 7  CKTPPDPVNGMVHVITDI-QVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPIC 64

Query: 77 VR 78
           R
Sbjct: 65 QR 66

>d1srza_ g.18.1.1 (A:) GABA-B receptor 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: GABA-B receptor 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (85), Expect = 2e-05
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 20 CRFPGAPAHSSIVFSNETLS--PGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFC 76
           +      +  +  +   L    G    + C+  F L+G SR VC   GQW     P C
Sbjct: 9  SKSYLTLENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSSRSVC-SQGQWSTP-KPHC 65

>d1ok3a2 g.18.1.1 (A:65-128) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 20 CRFPGAPAHSSIV---FSNETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIP 74
          C  P     +S+     +      GTV  Y C  G+        +  C +  +W    + 
Sbjct: 2  CEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA-VE 60

Query: 75 FCVR 78
          FC +
Sbjct: 61 FCKK 64

>d1gkga2 g.18.1.1 (A:1023-1092) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 1, cr1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 9e-05
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 20 CRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVC----DKTGQW 68
          C  P   A+   + +N E    G+V TY C  G      FEL+G     C    D+ G W
Sbjct: 3  CGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIW 62

Query: 69 MPEGIPFCV 77
               P C+
Sbjct: 63 SGP-APQCI 70

>d1elva2 g.18.1.1 (A:342-409) Complement C1S protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1S protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGF---ELLGPSRRVCDKTGQWMPE 71
          +C  P +  +  +     T   G+V  Y CE  +   E  G     C   G W+ E
Sbjct: 2  DCGIPESIENGKVEDPEST-LFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNE 56

>d1gpza2 g.18.1.1 (A:290-357) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1R protease domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 8/65 (12%)

Query: 19 ECRFPGAPAHSSIV-FSNETLSPGTVATYACERGFELLGPS------RRVCDKTGQWMPE 71
          +C  P      +I+                C++G++L+  +        VC   G W   
Sbjct: 2  KCPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA 61

Query: 72 GIPFC 76
           +P C
Sbjct: 62 -MPRC 65

>d1gkna1 g.18.1.1 (A:897-960) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 1, cr1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 4e-04
 Identities = 10/61 (16%), Positives = 15/61 (24%), Gaps = 4/61 (6%)

Query: 20 CRFPGAPAHSSIV--FSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV 77
          C+ P     + +    +      GT   Y C   +     S         W       C 
Sbjct: 6  CQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYGRPFSITCL-DNLVWSSP-KDVCK 63

Query: 78 R 78
          R
Sbjct: 64 R 64

>d1q3xa2 g.18.1.1 (A:366-440) Mannan-binding lectin serine protease 2 (MASP-2) domains {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Mannan-binding lectin serine protease 2 (MASP-2) domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (74), Expect = 7e-04
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 20 CRFPGAPAHSSIVFS--NETLSPGTVATYACERGFE--LLGPSRRVCDKTGQWMPEG--- 72
          C  P       + +       +   V  Y+CE  F    +   + VC+  G W       
Sbjct: 1  CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEK 60

Query: 73 -IPFCVRWC 80
           +P C   C
Sbjct: 61 SLPVCEPVC 69

>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.6 bits (69), Expect = 0.004
 Identities = 11/33 (33%), Positives = 11/33 (33%)

Query: 38 LSPGTVATYACERGFELLGPSRRVCDKTGQWMP 70
          L  G    Y C  GF       R C  TG W  
Sbjct: 19 LQEGQALEYVCPSGFYPYPVQTRTCRSTGSWST 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d2ok5a3	61	Complement factor B {Human (Homo sapiens) [TaxId:	99.84
d1quba4	60	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	99.82
d1g40a3	58	Complement control protein {Vaccinia virus [TaxId:	99.82
d1quba2	58	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	99.81
d2o39c2	64	CD46 (membrane cofactor protein, MCP) {Human (Homo	99.81
d1quba3	63	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	99.81
d1ly2a1	67	Complement receptor 2, cr2 {Human (Homo sapiens) [	99.81
d2ok5a2	62	Complement factor B {Human (Homo sapiens) [TaxId:	99.8
d1h03p2	63	Complement decay-accelerating factor (Daf, CD55) {	99.8
d1gpza2	68	Complement C1R protease domains {Human (Homo sapie	99.8
d1hcca_	59	Factor H, 15th and 16th modules {Human (Homo sapie	99.8
d1quba1	62	beta2-glycoprotein I {Human (Homo sapiens) [TaxId:	99.79
d1ly2a2	63	Complement receptor 2, cr2 {Human (Homo sapiens) [	99.78
d1ok3a2	64	Complement decay-accelerating factor (Daf, CD55) {	99.77
d1hfia_	62	Factor H, 15th and 16th modules {Human (Homo sapie	99.77
d1h03p1	62	Complement decay-accelerating factor (Daf, CD55) {	99.76
d1g40a2	62	Complement control protein {Vaccinia virus [TaxId:	99.76
d1g40a4	59	Complement control protein {Vaccinia virus [TaxId:	99.75
d1gkga2	70	Complement receptor 1, cr1 {Human (Homo sapiens) [	99.75
d1ok3a1	64	Complement decay-accelerating factor (Daf, CD55) {	99.75
d1ppqa_	68	Complement receptor 1, cr1 {Human (Homo sapiens) [	99.75
d1md8a2	76	Complement C1R protease domains {Human (Homo sapie	99.72
d1gkna1	64	Complement receptor 1, cr1 {Human (Homo sapiens) [	99.71
d1elva2	68	Complement C1S protease domain {Human (Homo sapien	99.69
d2o39c1	62	CD46 (membrane cofactor protein, MCP) {Human (Homo	99.69
d1q3xa2	75	Mannan-binding lectin serine protease 2 (MASP-2) d	99.68
d1zjka2	53	Complement C1R protease domains {Human (Homo sapie	99.67
d1srza_	68	GABA-B receptor 1 {Rat (Rattus norvegicus) [TaxId:	99.64
d2z3qb1	78	Interleukin-15 receptor subunit alpha {Human (Homo	99.59
d2ok5a4	68	Complement factor B {Human (Homo sapiens) [TaxId:	98.35
d2b5id2	63	Interleukin-2 receptor alpha chain {Human (Homo sa	98.2
d1g40a1	64	Complement control protein {Vaccinia virus [TaxId:	97.92
d2b5id1	64	Interleukin-2 receptor alpha chain {Human (Homo sa	95.05
d2joda1	106	Pituitary adenylate cyclase-activating polypeptide	92.23

>d2ok5a3 g.18.1.1 (A:77-137) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.5e-21  Score=95.55  Aligned_cols=60  Identities=18%  Similarity=0.436  Sum_probs=55.7

Q ss_pred             cCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeec
Q psy6641          19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRW   79 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~   79 (87)
                      .|+.|+.+.||.+...+..|.+|++|+|.|++||.|.|+..++|+.+|+|+.+ .|.|+..
T Consensus         1 ~Cp~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~-~P~C~d~   60 (61)
T d2ok5a3           1 HCPRPHDFENGEYWPRSPYYNVSDEISFHCYDGYTLRGSANRTCQVNGRWSGQ-TAICDNG   60 (61)
T ss_dssp             EECCCSCCTTEEEESCCSSEETTCEEEEEECTTCEEESCSEEEBCTTSCBSSC-CCEEECS
T ss_pred             CccCCCCCCCcEEecCCCcccCCCEEEEECCCCCEEeCCCeeEECCCCeECCC-CCeecCC
Confidence            48999999999998877789999999999999999999999999999999998 9999863

>d1quba4 g.18.1.1 (A:184-243) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-20  Score=93.00  Aligned_cols=59  Identities=32%  Similarity=0.732  Sum_probs=53.1

Q ss_pred             ccCCCCCCCCCeEEEecC-CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSN-ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      |.|+.|+.+.||.+.... ..|.+|++|+|+|++||.|.|+..++|+.+|+|+.  +|.|++
T Consensus         1 V~C~~p~~~~nG~~~~~~~~~~~~g~~~~y~C~~Gy~l~G~~~~~C~~~G~Ws~--~P~C~A   60 (60)
T d1quba4           1 VKCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSA--MPSCKA   60 (60)
T ss_dssp             CEECCCCCCTTEEEECCSCSSEETTCEEEEEECTTEEESSCSEEEBCTTSSBSC--CCCEEE
T ss_pred             CCCcCCCCCCCeEEEcCCCCcccCCCEEEEECCCCCEEcCCCceEECCCCcCCc--CccEeC
Confidence            579999999999997654 56899999999999999999999999999999984  799985

>d1g40a3 g.18.1.1 (A:127-184) Complement control protein {Vaccinia virus [TaxId: 10245]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

Probab=99.82  E-value=2.4e-20  Score=92.01  Aligned_cols=57  Identities=28%  Similarity=0.655  Sum_probs=52.7

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +.|+.|+.+.||.+...+..|.+|++|+|.|++||.|.|++.++|+ +|+|+.  +|.|+
T Consensus         1 V~C~~p~~~~nG~~~~~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~g~Ws~--~P~C~   57 (58)
T d1g40a3           1 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD--PPTCQ   57 (58)
T ss_dssp             SCCCSCCCCTTEEECCSSSSCCSSEEECEEECTTCEEESSSSEEES-SSCBCS--CCEEE
T ss_pred             CCCcCCCCCCCeEEeCCCCcccCCCEEEEEcCCCCEEcCCCccEeC-CCccCC--CCcee
Confidence            5799999999999988778899999999999999999999999997 999985  69996

>d1quba2 g.18.1.1 (A:63-120) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.2e-20  Score=90.77  Aligned_cols=57  Identities=28%  Similarity=0.773  Sum_probs=52.6

Q ss_pred             cCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .|+.|+.+.||.++..  .|.+|++|+|+|++||.|.|+..++|+++|+|+.+ .|.|++
T Consensus         2 ~C~~p~~~~nG~~~~~--~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~-~P~C~P   58 (58)
T d1quba2           2 VCPFAGILENGAVRYT--TFEYPNTISFSCNTGFYLNGADSAKCTEEGKWSPE-LPVCAP   58 (58)
T ss_dssp             BCCCCCCCTTEEEECS--CSBTTCEEEEEECTTEEEESCSEEEECTTSCEESC-CCEEEE
T ss_pred             CCcCCCCCCCcEEECC--CcccCCEEEEEcCCCCEEcCCCCeEECCCCeECCC-CCEeCC
Confidence            6999999999999874  47789999999999999999999999999999998 999975

>d2o39c2 g.18.1.1 (C:63-126) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: CD46 (membrane cofactor protein, MCP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.4e-20  Score=92.37  Aligned_cols=61  Identities=26%  Similarity=0.591  Sum_probs=55.6

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCc---cCCCCCCeEeec
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQ---WMPEGIPFCVRW   79 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~---Ws~~~~p~C~~~   79 (87)
                      +.|+.|+.+.||.+......|.+|++|+|+|++||.|.|...++|+.+|.   |+.+ .|.|+++
T Consensus         1 ~tC~~p~~p~nG~~~~~~~~~~~gs~~~f~C~~Gy~l~G~~~~~C~~~g~~~~Ws~~-~P~C~~I   64 (64)
T d2o39c2           1 ETCPYIRDPLNGQAVPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGK-PPICEKV   64 (64)
T ss_dssp             CBCCCCCCCTTEEEECTTSCCBSSEEEEEEECTTCEECSCSEEEEEECSSCEEESSC-CCCEECC
T ss_pred             CcCcCCCCCCCCEEEcCCCCcccCCEEEEECCCCCEEcCCCceEEeCCCCCCeECCC-CCEeeEC
Confidence            36999999999999987777999999999999999999999999998886   9998 9999864

>d1quba3 g.18.1.1 (A:121-183) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.4e-20  Score=92.07  Aligned_cols=59  Identities=19%  Similarity=0.479  Sum_probs=52.8

Q ss_pred             ccCCCCCCCCCeEEEecC----CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSN----ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~----~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+....    ..|.+|++|+|+|++||.|.|+..++|+++|+|+ . +|.|++
T Consensus         1 V~C~~P~~p~ng~i~~~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~G~Ws-~-~P~C~e   63 (63)
T d1quba3           1 IICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGNDTITCTTHGNWT-K-LPECRE   63 (63)
T ss_dssp             CEECCCCCCTTEEEEECCCSBTTBEETTCEEEEEECTTEEEESCSEEEBCTTSSBS-C-CCEEEE
T ss_pred             CCCcCCCCCCCCEEeccccCCCCceecCCEEEEEcCCCCEEcCCCeEEEecCCeEC-c-CCEecC
Confidence            579999999999997643    4688999999999999999999999999999998 4 799975

>d1ly2a1 g.18.1.1 (A:0-66) Complement receptor 2, cr2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 2, cr2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4e-20  Score=93.62  Aligned_cols=61  Identities=26%  Similarity=0.616  Sum_probs=55.6

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceee----CCCCccCCCCCCeEeec
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVC----DKTGQWMPEGIPFCVRW   79 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C----~~~g~Ws~~~~p~C~~~   79 (87)
                      +.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|    +.+|+|+.+ .|.|++.
T Consensus         2 ~~C~~P~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~~~~~g~Ws~~-~P~C~~i   66 (67)
T d1ly2a1           2 ASCGSPPPILNGRISYYSTPIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP-APKCEYF   66 (67)
T ss_dssp             CEECCCCCCTTEEECCCCSSEETTCEEEEEECTTEEEESCSEEEEECSSSSSCEESSC-CCEEEEC
T ss_pred             CcCcCCCCCCCeEEEcCCCcccCCCEEEEEcCCCCEEcCCCCEEEeCCCCCCCEECCC-CCEeeEC
Confidence            579999999999988777789999999999999999999999999    578999998 9999874

>d2ok5a2 g.18.1.1 (A:138-199) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=90.25  Aligned_cols=60  Identities=32%  Similarity=0.600  Sum_probs=54.3

Q ss_pred             cCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEeeccc
Q psy6641          19 ECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVRWCT   81 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~~~~   81 (87)
                      .|+.|+.+.||.+..  ..|.+|++|+|+|++||.|.|+..++|+.+|+|+.. .|.|++..+
T Consensus         2 ~C~~P~~p~ng~~~~--~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~g~Ws~~-~P~C~~~~~   61 (62)
T d2ok5a2           2 YCSNPGIPIGTRKVG--SQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGT-EPSCQDSFM   61 (62)
T ss_dssp             SSCCCCCCTTCEEEC--CCCSTTCEEEEECCTTCEEESCSEEEBCTTSCBSSC-CCEEECTTC
T ss_pred             CCcCCCCCCCCEEEC--CCcccCCEEEEECCCCCEEcCCCceEECCCCcCCCC-CceECCccc
Confidence            499999999998875  458899999999999999999999999999999998 999998753

>d1h03p2 g.18.1.1 (P:67-129) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.4e-20  Score=92.09  Aligned_cols=59  Identities=25%  Similarity=0.519  Sum_probs=54.1

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeC---CCCccCCCCCCeEe
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD---KTGQWMPEGIPFCV   77 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~---~~g~Ws~~~~p~C~   77 (87)
                      |.|+.|+.+.||.+......|.+|++|+|+|++||.|.|+..++|+   .+|+|+.+ +|.|+
T Consensus         1 I~C~~p~~~~nG~~~~~~~~~~~g~~v~y~C~~Gy~l~G~~~~~C~~~~~~g~Ws~~-~P~C~   62 (63)
T d1h03p2           1 IYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGP-PPECR   62 (63)
T ss_dssp             CBCCCCCCCTTEEETTCCSCCBTTCEEEEEECTTCEEESCSEEEEEEETTEEEESSC-CCEEE
T ss_pred             CCCcCCCCCCCeEEECCCCcccCCCEEEEECCCCCEEcCCCcEEEeccCCCCEEcCC-CCEeC
Confidence            5799999999999988777899999999999999999999999994   67899998 99997

>d1gpza2 g.18.1.1 (A:290-357) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1R protease domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=6.4e-20  Score=93.08  Aligned_cols=60  Identities=20%  Similarity=0.483  Sum_probs=52.5

Q ss_pred             ccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCC------ceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPS------RRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~------~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+... ...|.+|++|+|+|++||.|.|..      .++|+.+|+|+.+ +|.|+-
T Consensus         1 I~Cp~P~~~~nG~~~~~~~~~y~~~~~v~y~C~~Gy~l~g~~~~~~s~~~~C~~~G~Ws~~-~P~C~v   67 (68)
T d1gpza2           1 IKCPQPKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRA-MPRCKI   67 (68)
T ss_dssp             CCBCCCCCSSTTEEEESCCSSBCTTCEEEEEECTTEEEESSSCEESCEEEEBCTTSCBSSC-CCEEEE
T ss_pred             CCCcCCCCCCCCEEeCCCCCceecCCEEEEEcCCCccccCccccccccceeECCCCEECCC-CCeEee
Confidence            57999999999988654 567999999999999999999843      4799999999998 999974

>d1hcca_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Factor H, 15th and 16th modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4e-20  Score=91.50  Aligned_cols=59  Identities=27%  Similarity=0.576  Sum_probs=53.5

Q ss_pred             CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +.+.|+.|+.+.||.+...+..|.+|++|+|+|++||.|.|+..++|+ +|+|+.  +|.|+
T Consensus         1 E~i~C~~pp~~~nG~~~~~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~g~Ws~--~P~Ci   59 (59)
T d1hcca_           1 EGLPCKSPPEISHGVVAHMSDSYQYGEEVTYKCFEGFGIDGPAIAKCL-GEKWSH--PPSCI   59 (59)
T ss_dssp             CCCCCCSCCCBTTEEESCCCSCCCSSCEECEEECTTSCEESCSCEEEE-TTEEEC--CCEEC
T ss_pred             CcCCCcCCCCCCCEEEeCCCCcccCCCEEEEECCCCCEEcCCCeeEeC-CCcCCC--CCEeC
Confidence            357899999999999987778899999999999999999999999997 899984  69994

>d1quba1 g.18.1.1 (A:1-62) beta2-glycoprotein I {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: beta2-glycoprotein I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.2e-20  Score=91.15  Aligned_cols=60  Identities=27%  Similarity=0.517  Sum_probs=54.5

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCC-ceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPS-RRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~-~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+...+..|.+|+.|+|+|++||.|.|+. .++|+++|+|+.. .|.|++
T Consensus         2 r~C~~P~~~~ng~~~~~~~~y~~g~~v~y~C~~Gy~l~g~~~~~~C~~~G~Ws~~-~p~C~P   62 (62)
T d1quba1           2 RTCPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKFICPLTGLWPIN-TLKCTP   62 (62)
T ss_dssp             CSEECCCCCTTEEEESCCSEECTTCEEEEEECTTEEETTSCEEEECCTTSCCCCC-CCCEEE
T ss_pred             CcCcCCCCCCCcEEecCCCcccCCCEEEEEeCCCCEEeecCCeeEeCcCCEEcCC-CCEEcC
Confidence            46999999999999887788999999999999999999966 5789999999998 999975

>d1ly2a2 g.18.1.1 (A:67-129) Complement receptor 2, cr2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 2, cr2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-19  Score=89.78  Aligned_cols=61  Identities=26%  Similarity=0.596  Sum_probs=51.6

Q ss_pred             cccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCC-CCCCeEeec
Q psy6641          17 YEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP-EGIPFCVRW   79 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~-~~~p~C~~~   79 (87)
                      ...|+.|..+ |+.+......|.+|++|+|.|++||.|.|+..++|+.+|+|++ + .|.|++.
T Consensus         2 ~~~Cp~P~~p-~~~~~~~~~~y~~g~~v~~~C~~Gy~l~G~~~~~C~~~g~Ws~~~-~P~C~~I   63 (63)
T d1ly2a2           2 YSSCPEPIVP-GGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWCQANNMWGPTR-LPTCVSI   63 (63)
T ss_dssp             TCEECCCCCT-TEEEEECCSSEETTCEEEEEECTTEEEESCSEEEECTTSSEESSC-CCEEEEC
T ss_pred             cCcCcCCCCc-CCcEEcCCCCccCCCEEEEECCCCCEEeCCCCeEECCCCcCCCCC-CCEEeEC
Confidence            4579988654 6666555678999999999999999999999999999999996 4 7999863

>d1ok3a2 g.18.1.1 (A:65-128) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.6e-19  Score=88.07  Aligned_cols=59  Identities=22%  Similarity=0.542  Sum_probs=52.3

Q ss_pred             cCCCCCCCCCeEEEe---cCCCcCCCCEEEEEcCCCCEEc--CCCceeeCCCCccCCCCCCeEee
Q psy6641          19 ECRFPGAPAHSSIVF---SNETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~---~~~~~~~g~~~~~~C~~gy~l~--G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .|+.|+.+.||.+..   .+..|.+|++|+|.|++||.|.  |+..++|+.+|+|+.. .|.|++
T Consensus         1 sC~~Pp~i~n~~~~~~~~~~~~f~~Gs~v~Y~C~~Gy~~~~~g~~~~~C~~~g~Ws~~-~p~C~r   64 (64)
T d1ok3a2           1 SCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTA-VEFCKK   64 (64)
T ss_dssp             CCCSCCCCSSEEECTTGGGCCCCCTTCEEEEEECTTEEECTTSCCEEEBCTTSCBCCC-CCSEEE
T ss_pred             CcCCCCCCCCceEecCCccCCEECCCCEEEEEeCCCcEEeccCccEEEECCCCEECcC-CceeeC
Confidence            599999999999864   3467999999999999999997  6778999999999998 999985

>d1hfia_ g.18.1.1 (A:) Factor H, 15th and 16th modules {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Factor H, 15th and 16th modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-19  Score=90.66  Aligned_cols=59  Identities=32%  Similarity=0.626  Sum_probs=51.7

Q ss_pred             CcccCCCCCCCCCeEEEecC---CCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          16 EYEECRFPGAPAHSSIVFSN---ETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~---~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +.+.|+.|+.+.||.+....   ..|.+|++|+|+|++||.|.|++.++|+ +|+|+.  +|.|+
T Consensus         1 e~i~C~~pp~~~ng~~~~~~~~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~G~Ws~--~P~Ce   62 (62)
T d1hfia_           1 EKIPCSQPPQIEHGTINSSRSSQESYAHGTKLSYTCEGGFRISEENETTCY-MGKWSS--PPQCE   62 (62)
T ss_dssp             CCCCEESCCCBTTBEECSCSSSCSEECTTCEEEEECCTTCCBCSSCEEEEE-TTEECC--CCCBC
T ss_pred             CccCCcCCCCCCCeEEeCCCCCCceecCCCEEEEECCCCCEECCCCeeEeC-CCccCC--CCccC
Confidence            35789999999999987542   4689999999999999999999999997 899984  79985

>d1h03p1 g.18.1.1 (P:5-66) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.9e-19  Score=87.33  Aligned_cols=59  Identities=24%  Similarity=0.648  Sum_probs=52.8

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCc---cCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQ---WMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~---Ws~~~~p~C~~   78 (87)
                      +.|+.|+.+.||.+.... .+.+|++|+|+|++||.|+|+..++|+.+|.   |+.. .|.|++
T Consensus         1 ksC~~p~~p~nG~~~~~~-~~~~g~~v~f~C~~Gy~L~G~~~~~C~~~g~~~~Ws~~-~P~C~~   62 (62)
T d1h03p1           1 KSCPNPGEIRNGQIDVPG-GILFGATISFSCNTGYKLFGSTSSFCLISGSSVQWSDP-LPECRE   62 (62)
T ss_dssp             CBCCCCCCCTTEEEECTT-CSBTTCEEEEEECTTEEEESCSEEEEEEETTEEEESSC-CCEEEE
T ss_pred             CcCcCCCCCCCeeEEcCC-CcCcCCEEEEECCCCCEEcCCCcEEEeCCCCcCeECCC-CCEEcC
Confidence            369999999999987654 5789999999999999999999999998875   9998 999985

>d1g40a2 g.18.1.1 (A:65-126) Complement control protein {Vaccinia virus [TaxId: 10245]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

Probab=99.76  E-value=1.3e-18  Score=86.77  Aligned_cols=58  Identities=28%  Similarity=0.696  Sum_probs=51.7

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeC----CCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCD----KTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~----~~g~Ws~~~~p~C~~   78 (87)
                      ++|+.|+.+.||.+...  .+.+|++|+|+|++||.|.|+..++|+    .+|+|+.. +|.|++
T Consensus         1 k~C~~p~~p~nG~~~~~--~~~~gs~v~y~C~~Gy~l~G~~~~~C~~~~~~~~~Ws~~-~P~Cea   62 (62)
T d1g40a2           1 RRCPSPRDIDNGQLDIG--GVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPE-APICES   62 (62)
T ss_dssp             CCCCSCCCCTTCEESSC--CCSSCCEECEECCTTCEECSCSSEEBCCSSSSCCCBSTT-SSCEES
T ss_pred             CcCcCCCCCCCcEEECC--CccCCCEEEEECCCCCEEcCCCceEEeCCCCCCCEECCC-CccccC
Confidence            36999999999998764  477899999999999999999999997    67899998 999974

>d1g40a4 g.18.1.1 (A:185-243) Complement control protein {Vaccinia virus [TaxId: 10245]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

Probab=99.75  E-value=2.2e-19  Score=88.76  Aligned_cols=58  Identities=26%  Similarity=0.642  Sum_probs=50.8

Q ss_pred             ccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          18 EECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +.|+.| .++||.+... +..|.+|++|+|+|++||.|.|++.++|+++|+|+.+ .|.|.
T Consensus         1 V~C~~P-~~~ng~~~~~~~~~y~~g~~v~~~C~~Gy~l~G~~~~~C~~~G~Ws~~-~P~Ci   59 (59)
T d1g40a4           1 VKCPHP-TISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPE-LPKCV   59 (59)
T ss_dssp             CCCCCC-CCSSEEECSCCCSSCCSCCCCCEEECTTCCEESCSSCCEETTTEESSC-CCEEC
T ss_pred             CCCcCC-CCCCCEEECCCCCcccCCCEEEEEcCCCCEEcCCCceEECCCCEECCC-CcEEC
Confidence            579866 5679988654 4678999999999999999999999999999999998 99995

>d1gkga2 g.18.1.1 (A:1023-1092) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 1, cr1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.7e-19  Score=89.47  Aligned_cols=59  Identities=34%  Similarity=0.739  Sum_probs=52.7

Q ss_pred             ccCCCCCCCCCeEEEecC-CCcCCCCEEEEEcCCC------CEEcCCCceeeCCC----CccCCCCCCeEe
Q psy6641          18 EECRFPGAPAHSSIVFSN-ETLSPGTVATYACERG------FELLGPSRRVCDKT----GQWMPEGIPFCV   77 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~-~~~~~g~~~~~~C~~g------y~l~G~~~~~C~~~----g~Ws~~~~p~C~   77 (87)
                      |.|+.|+.+.||.+.... ..|.+|++|+|+|++|      |.|.|+..++|+.+    |+|+.+ +|.|+
T Consensus         1 I~C~~P~~~~nG~~~~~~~~~~~~g~~v~y~C~~G~~~~~~y~L~G~~~~~C~~~~~~~G~Ws~~-~P~Ci   70 (70)
T d1gkga2           1 IPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGP-APQCI   70 (70)
T ss_dssp             CCCCCCCCCTTCCBCSSCSSCCCSSCEEEBCCCCTTSCCSSCCEESCCEEECCCSSSSSCCCSCC-CCEEC
T ss_pred             CCCcCCCCCCCcEEeCCCCCcccCCCEEEEEcCCCCcccccEEEeCCcEEEEEeCCCcccEECCC-CceEC
Confidence            579999999999987653 5689999999999999      99999999999865    789998 99995

>d1ok3a1 g.18.1.1 (A:1-64) Complement decay-accelerating factor (Daf, CD55) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement decay-accelerating factor (Daf, CD55)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-18  Score=87.09  Aligned_cols=60  Identities=27%  Similarity=0.572  Sum_probs=52.3

Q ss_pred             ccCCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcC--CCceeeCCCCccCCCCCCeEee
Q psy6641          18 EECRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLG--PSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G--~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .+|+.|+.+.||.+... ...|.+|++|+|+|++||.|.+  +..++|+.+|+|+.. .|.|++
T Consensus         2 ~~C~~Pp~i~ng~~~~~~~~~y~~g~~v~Y~C~~Gy~~~~~~~~~~~C~~ng~Ws~~-~p~C~r   64 (64)
T d1ok3a1           2 QDCGLPPDVPNAQPALEGRTSFPEDTVITYKCEESFVKIPGEKDSVICLKGSQWSDI-EEFCNR   64 (64)
T ss_dssp             CEECSCCCCTTEEECCTTCSCEETTCEEEEEECTTCEECTTSCCEEEEETTTEECCC-CCCEEC
T ss_pred             CCCCCCCCCCCcEEecCCCCeecCCCEEEEEeCCCcEEccCCcccEEeCCCCEECCC-CceEcC
Confidence            47999999999998764 4668899999999999999984  567899999999998 999974

>d1ppqa_ g.18.1.1 (A:) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 1, cr1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=5.9e-19  Score=89.45  Aligned_cols=62  Identities=29%  Similarity=0.664  Sum_probs=54.8

Q ss_pred             CcccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCC---ccCCCCCCeEeec
Q psy6641          16 EYEECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTG---QWMPEGIPFCVRW   79 (87)
Q Consensus        16 ~~~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g---~Ws~~~~p~C~~~   79 (87)
                      +.+.|+.|+.+.||.+... ..|.+|++++|+|++||.|.|+..++|+.+|   +|+.+ +|.|+++
T Consensus         3 ~~~~C~~p~~p~nG~~~~~-~~~~~gs~~~y~C~~Gy~l~G~~~~~C~~~g~~~~Ws~~-~P~C~~I   67 (68)
T d1ppqa_           3 EAKSCKTPPDPVNGMVHVI-TDIQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTK-PPICQRI   67 (68)
T ss_dssp             SSCCBCCCCCCTTEEEECS-SCSCTTCCCEEEESTTCCBSSCSCCCEEECSSSEEESSC-CCCBCCC
T ss_pred             cCCCCcCCCCCCCcEEECC-CCcccCCEEEEEeCCCcEEcCCCcEEEeCCCCCCEECCC-CCEeeEC
Confidence            4678999999999999866 4578899999999999999999999998777   69997 9999864

>d1md8a2 g.18.1.1 (A:358-433) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1R protease domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.6e-18  Score=87.19  Aligned_cols=58  Identities=14%  Similarity=0.249  Sum_probs=48.0

Q ss_pred             cCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCC---------EEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          19 ECRFPGAPAHSSIVFS--NETLSPGTVATYACERGF---------ELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        19 ~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy---------~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +|+.|+.+.||.+...  ...|.++++|+|+|++||         .|.|...++|+++|+|+.. .|.|+
T Consensus         1 dC~~P~~i~nG~~~~~~~~~~~~y~s~v~y~C~~GY~~~~~~~~~~l~G~~~~tC~~~G~Ws~~-~p~C~   69 (76)
T d1md8a2           1 DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNE-QKGEK   69 (76)
T ss_dssp             CCCSCCCCTTEEEEESSSTTCCSTTCEEEEEECTTTEEECC--------CCEEEECTTSSEECS-SCCSS
T ss_pred             CcCCCCCCCCccEEeccCCCceecCCEEEEEecCCccccccccceeecccceeeecCCCcCCCC-CCCcc
Confidence            5999999999999765  357899999999999999         6778889999999999987 77775

>d1gkna1 g.18.1.1 (A:897-960) Complement receptor 1, cr1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement receptor 1, cr1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.9e-18  Score=85.02  Aligned_cols=60  Identities=18%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             cccCCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          17 YEECRFPGAPAHSSIVFS--NETLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        17 ~~~C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .+.|+.|+.+.||.+...  ...|.+|++|+|.|++||.+ |...++|+.+|+|+.+ .|.|++
T Consensus         3 e~~C~~Pp~~~~~~~~~~~~~~~y~~G~~v~Y~C~~Gy~~-~~~~~~C~~~g~Ws~~-~p~C~r   64 (64)
T d1gkna1           3 EAHCQAPDHFLFAKLKTQTTASDFPIGTSLKYECRPEYYG-RPFSITCLDNLVWSSP-KDVCKR   64 (64)
T ss_dssp             CCEECCCCCCSSEEECSCCCCSSEESSCEEEEEECTTEES-CCEEEEBCSSSCBCCC-CSCCEE
T ss_pred             cccCcCCCCCCcceEecCCCCCeecCCCEEEEEeCCCccc-CccccCccCCCEECCC-CceeeC
Confidence            457999999999998643  46799999999999999976 7788999999999998 999975

>d1elva2 g.18.1.1 (A:342-409) Complement C1S protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1S protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.5e-17  Score=84.18  Aligned_cols=58  Identities=24%  Similarity=0.438  Sum_probs=48.4

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCC---EEcCCCceeeCCCCccCCCCCCeEe
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGF---ELLGPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy---~l~G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      ++|+.|+.++||.+... ..+.+|++++|+|++||   .+.|+..++|++||+|+.+ .+.|+
T Consensus         1 V~Cg~P~~i~ng~~~~~-~~~~ygs~v~y~C~~Gy~~~~~~g~~~~~C~~dG~Ws~~-~~~c~   61 (68)
T d1elva2           1 LDCGIPESIENGKVEDP-ESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNE-VLGPE   61 (68)
T ss_dssp             CBCCSCCCCTTEEECCC-SCCBTTCEEEEEECTTTEEEC--CCSEEEECTTSCEEBT-TTBTS
T ss_pred             CCCcCCCCCCCeEEECC-CCCCCCcEEEEEecCCceEEEecCccEEEECCCCcCcCC-CCCCc
Confidence            57999999999998765 34678999999999999   4568899999999999986 76665

>d2o39c1 g.18.1.1 (C:1-62) CD46 (membrane cofactor protein, MCP) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: CD46 (membrane cofactor protein, MCP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.4e-17  Score=81.43  Aligned_cols=59  Identities=20%  Similarity=0.547  Sum_probs=48.6

Q ss_pred             CCCCCCCCCeEEEec-CCCcCCCCEEEEEcCCCCEEcC--CCceeeCCCCccCCCCCCeEee
Q psy6641          20 CRFPGAPAHSSIVFS-NETLSPGTVATYACERGFELLG--PSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        20 C~~p~~~~~g~~~~~-~~~~~~g~~~~~~C~~gy~l~G--~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      |+.|+.+.||.+... +..|.+|++|+|.|++||.|.+  +..++|+.||+|++...+.|.+
T Consensus         1 C~~PP~i~ng~~~~~~~~~y~~g~~v~Y~C~~Gy~l~~~~~~~i~C~~ng~WSp~~~~~C~r   62 (62)
T d2o39c1           1 CEEPPTFEAMELIGKPKPYYEIGERVDYKCKKGYFYIPPLATHTICDRNHTWLPVSDDACYR   62 (62)
T ss_dssp             CBSCCCCSSEEESSCCCSBCCTTCEEEEEECTTEEECSSSCSEEECCSSSSCCCCCSTTEEE
T ss_pred             CcCCCCcCCCEEeCCcCCccCCCCEEEEEeCCCcEECCCCCCEEEECCCCEECCCCCCCccC
Confidence            788999999998643 4679999999999999999984  4678999999999641356864

>d1q3xa2 g.18.1.1 (A:366-440) Mannan-binding lectin serine protease 2 (MASP-2) domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Mannan-binding lectin serine protease 2 (MASP-2) domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-17  Score=83.95  Aligned_cols=61  Identities=23%  Similarity=0.581  Sum_probs=50.7

Q ss_pred             CCCCCCCCCeEEEec--CCCcCCCCEEEEEcCCCCE--EcCCCceeeCCCCccCCC----CCCeEeecc
Q psy6641          20 CRFPGAPAHSSIVFS--NETLSPGTVATYACERGFE--LLGPSRRVCDKTGQWMPE----GIPFCVRWC   80 (87)
Q Consensus        20 C~~p~~~~~g~~~~~--~~~~~~g~~~~~~C~~gy~--l~G~~~~~C~~~g~Ws~~----~~p~C~~~~   80 (87)
                      |+.|+.+.||.+...  ...|.+|++|+|+|++||.  |.|+..++|++||+|+..    .+|.|++.+
T Consensus         1 C~~P~~i~nG~~~~~~~~~~~~ygs~v~Y~C~~Gy~~~l~G~~~~~C~~~G~Ws~~~~~c~~p~C~pvC   69 (75)
T d1q3xa2           1 CGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVC   69 (75)
T ss_dssp             CCSCCCCTTEEEEESSSTTCCBTTCEEEEEECTTTEEEESCCSEEEECTTSCEEETTCCSSCCEEEECC
T ss_pred             CcCCCCCCCceEEeccCCCCcccCCEEEEeecCCceeeccCCceEEECCCCcCCCCCCCCcCCeeeCCC
Confidence            888999999998754  3568899999999999995  679999999999999853    156787653

>d1zjka2 g.18.1.1 (A:311-363) Complement C1R protease domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement C1R protease domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=5.1e-17  Score=78.38  Aligned_cols=44  Identities=30%  Similarity=0.560  Sum_probs=39.8

Q ss_pred             ecCCCcCCCCEEEEEcCCCCEEc------CCCceeeCCCCccCCCCCCeEe
Q psy6641          33 FSNETLSPGTVATYACERGFELL------GPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        33 ~~~~~~~~g~~~~~~C~~gy~l~------G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +.+..|.++++|+|+|++||.|.      |+..++|+++|+|+.+ .|.|+
T Consensus         3 P~~~~y~~~d~V~f~C~~GY~L~~~~~~~gs~~~~C~~~G~Ws~~-~P~C~   52 (53)
T d1zjka2           3 PVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRP-MPACS   52 (53)
T ss_dssp             SCCSCBCTTCEEEEEECTTEEEEETTEECSCCEEEBCSSSSBSSC-CCEEE
T ss_pred             CcCCcccCCCEEEEEeCCCCeeccccccCCcceeEECCCCcCCCC-CceEe
Confidence            34567999999999999999996      7888999999999998 99996

>d1srza_ g.18.1.1 (A:) GABA-B receptor 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: GABA-B receptor 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.4e-16  Score=80.40  Aligned_cols=58  Identities=26%  Similarity=0.599  Sum_probs=49.6

Q ss_pred             cCCCC-CCCCCeEEEecCC--CcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCCCCCCeEee
Q psy6641          19 ECRFP-GAPAHSSIVFSNE--TLSPGTVATYACERGFELLGPSRRVCDKTGQWMPEGIPFCVR   78 (87)
Q Consensus        19 ~C~~p-~~~~~g~~~~~~~--~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~~~~p~C~~   78 (87)
                      .|..+ ..++||.+.....  .|.+|++|+|+|++||.|.|+..++|. +|+|+++ +|.|+.
T Consensus         7 ~C~~~~~ti~NG~v~~~~~~~~~~~G~~~~y~C~~Gy~l~G~~~~~C~-~g~Ws~~-~P~C~v   67 (68)
T d1srza_           7 ICSKSYLTLENGKVFLTGGDLPALDGARVEFRCDPDFHLVGSSRSVCS-QGQWSTP-KPHCQV   67 (68)
T ss_dssp             SCCGGGGEETTEEEECCCCSCSTTTTCEEEEEECTTEEECSCCEEEEE-TTEESSC-CCCEEE
T ss_pred             ccCCCCCcccCCEEEeCCCCccccCCCEEEEECCCCCeECCCCeeECC-CCeECCC-CCeEeC
Confidence            47654 4689999987653  467899999999999999999999996 9999998 999985

>d2z3qb1 g.18.1.1 (B:1-78) Interleukin-15 receptor subunit alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Interleukin-15 receptor subunit alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.6e-16  Score=82.23  Aligned_cols=57  Identities=19%  Similarity=0.162  Sum_probs=47.0

Q ss_pred             ccCCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCC--CceeeCCCCccCCCCCCeEe
Q psy6641          18 EECRFPGAPAHSSIVFSNETLSPGTVATYACERGFELLGP--SRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        18 ~~C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~--~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      +.|+.|+.+.||.+..  ..|.+|++|+|+|++||+|.|.  ..++|+.+|+|+.. .+.|.
T Consensus         1 I~C~~P~~~~ng~~~~--~~~~~g~~v~y~C~~GY~~~~~~s~~~~C~~ng~w~~~-~~~c~   59 (78)
T d2z3qb1           1 ITCPPPMSVEHADIWV--KSYSLYSRERYICNSGFKRKAGTSSLTECVLNKATNVA-HWTTP   59 (78)
T ss_dssp             CBCCCCCCCTTEECCC--SCCBTTCEEECEECTTEEECTTCCCEEEEEEETTTTEE-EECCC
T ss_pred             CCCcCCCCCCCceEEc--ccccCCCEEEEEeCCCcEEccCCcCcEEeECCCCcccc-cccCC
Confidence            5799999999998754  4588999999999999999874  56889999988764 45554

>d2ok5a4 g.18.1.1 (A:9-76) Complement factor B {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1e-06  Score=43.17  Aligned_cols=49  Identities=24%  Similarity=0.495  Sum_probs=40.1

Q ss_pred             ccCCC-CCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEcCCCceeeCCCCccCC
Q psy6641          18 EECRF-PGAPAHSSIVFSNETLSPGTVATYACERGFELLGPSRRVCDKTGQWMP   70 (87)
Q Consensus        18 ~~C~~-p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~Ws~   70 (87)
                      .+|+. -..+..|.+...+    .|+++.|.|..||.-.--..+.|+.+|+|+.
T Consensus         2 ~sC~~~~v~I~GG~~tl~~----~GSvL~Y~CP~G~YPyPv~~R~C~~~G~Ws~   51 (68)
T d2ok5a4           2 GSCSLEGVEIKGGSFRLLQ----EGQALEYVCPSGFYPYPVQTRTCRSTGSWST   51 (68)
T ss_dssp             CCCCCTTCCCBTCEEEEEG----GGTEEEEECCTTEEEESCSEEEBCTTSSBCC
T ss_pred             CCCCccccEEeCCEEEEcC----CCeEEEEECCCCCCCCCccEEEecCCCcccc
Confidence            36775 3567788887754    3999999999999887778999999999975

>d2b5id2 g.18.1.1 (D:103-165) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Interleukin-2 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.1e-06  Score=41.99  Aligned_cols=56  Identities=25%  Similarity=0.587  Sum_probs=41.1

Q ss_pred             CCCCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEE--cCCCceeeC-CCC--ccCCCCCCeEe
Q psy6641          20 CRFPGAPAHSSIVFSNETLSPGTVATYACERGFEL--LGPSRRVCD-KTG--QWMPEGIPFCV   77 (87)
Q Consensus        20 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l--~G~~~~~C~-~~g--~Ws~~~~p~C~   77 (87)
                      |..|+.-+|...... -.|.+|+++.|.|..||.-  .++..++|- .+|  .|+.+ ...|.
T Consensus         2 C~ePp~w~He~~kri-yhf~vGQ~vhyqC~~Gy~~~~~~pa~s~CK~~~Gk~~WT~p-~l~C~   62 (63)
T d2b5id2           2 CREPPPWENEATERI-YHFVVGQMVYYQCVQGYRALHRGPAESVCKMTHGKTRWTQP-QLICT   62 (63)
T ss_dssp             BCCCCCCSSCCSSCC-EECCTTCEEEEEECTTCEEEESSCSEEEEEECSSCEEECCC-CEEEE
T ss_pred             CCCCCCCCCccceee-eEEecccEEEEEccccchhcCCCchhhhHHhhcCcceeeCC-CceeC
Confidence            777777777643221 3577899999999999963  478889993 345  59987 77775

>d1g40a1 g.18.1.1 (A:1-64) Complement control protein {Vaccinia virus [TaxId: 10245]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Complement control protein
species: Vaccinia virus [TaxId: 10245]

Probab=97.92  E-value=5.8e-05  Score=34.70  Aligned_cols=55  Identities=29%  Similarity=0.649  Sum_probs=41.1

Q ss_pred             CCCCCCCCCeEEEec-----CCCcCCCCEEEEEcCCCCEEc--CCCceeeCCCCccCCCCCCeEe
Q psy6641          20 CRFPGAPAHSSIVFS-----NETLSPGTVATYACERGFELL--GPSRRVCDKTGQWMPEGIPFCV   77 (87)
Q Consensus        20 C~~p~~~~~g~~~~~-----~~~~~~g~~~~~~C~~gy~l~--G~~~~~C~~~g~Ws~~~~p~C~   77 (87)
                      |..|..+.|-.+..+     +..|.+|+.++|-|.+||.-.  |.-...|+..| |.-  .-.|.
T Consensus         2 ctipsrpinmkfknsvetdananynigdtieylclpgyrkqkmgpiyakctgtg-wtl--fnqci   63 (64)
T d1g40a1           2 CTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WTL--FNQCI   63 (64)
T ss_dssp             CCSCCCCSSCCEECSSCCCSSCCSSSCCEECEECCTTCEECSSCCSCEECCSSS-CBS--CCCEE
T ss_pred             cccCCCccccccccceecccccccccccceeeeeccchhhhccCCeeeEecccc-hHH--HHHhc
Confidence            566666667666442     357999999999999999865  77888998776 863  45564

>d2b5id1 g.18.1.1 (D:1-64) Interleukin-2 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Complement control module/SCR domain
superfamily: Complement control module/SCR domain
family: Complement control module/SCR domain
domain: Interleukin-2 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.05  E-value=0.037  Score=25.76  Aligned_cols=48  Identities=23%  Similarity=0.495  Sum_probs=36.8

Q ss_pred             CCCCCCCeEEEecCCCcCCCCEEEEEcCCCCEEc--CCCceeeCCC---CccCCC
Q psy6641          22 FPGAPAHSSIVFSNETLSPGTVATYACERGFELL--GPSRRVCDKT---GQWMPE   71 (87)
Q Consensus        22 ~p~~~~~g~~~~~~~~~~~g~~~~~~C~~gy~l~--G~~~~~C~~~---g~Ws~~   71 (87)
                      .||.+.|+.+.-  ..|..|+.+.-.|..||...  |+....|..+   ..|...
T Consensus         6 dPP~~~~AtFKa--~~YK~GTmLNCeCkrGFRRi~~gs~~M~C~GnsSHssWen~   58 (64)
T d2b5id1           6 DPPEIPHATFKA--MAYKEGTMLNCECKRGFRRIKSGSLYMLCTGNSSHSSWDNQ   58 (64)
T ss_dssp             CCCCCTTEEEEC--SSBCTTCEEECCCCTTEEECTTCCSEEEBC-----CCBSCC
T ss_pred             CCcccchhheee--eeeccceeEeecccccceecCCCCeEEEEcCCCCCchhhcc
Confidence            578888998764  46999999999999999876  5677889744   258753

>d2joda1 g.76.1.1 (A:17-122) Pituitary adenylate cyclase-activating polypeptide type I receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Hormone receptor domain
superfamily: Hormone receptor domain
family: Hormone receptor domain
domain: Pituitary adenylate cyclase-activating polypeptide type I receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.23  E-value=0.042  Score=28.63  Aligned_cols=35  Identities=26%  Similarity=0.662  Sum_probs=25.0

Q ss_pred             cCCCCEEEEEcCCCCEE------cCCCceeeCCCCccCCCCCC
Q psy6641          38 LSPGTVATYACERGFEL------LGPSRRVCDKTGQWMPEGIP   74 (87)
Q Consensus        38 ~~~g~~~~~~C~~gy~l------~G~~~~~C~~~g~Ws~~~~p   74 (87)
                      -..|++|+..|...|..      .|...+.|+.+| |+.. .|
T Consensus        51 t~~G~~v~~~CP~~~~~~~~~~~~g~~~R~C~~~G-Ws~~-~p   91 (106)
T d2joda1          51 AHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG-WSEP-FP   91 (106)
T ss_dssp             CBTTCCEEECCSCSSCCCSCCSCCSCEEECBCSSC-BCCC-SS
T ss_pred             CCCCCEEEecCChhhcccCCcccCCeEEEecccCc-cCCC-CC
Confidence            34588888999865432      244578999999 9876 55