Psyllid ID: psy6650

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG
ccccccccccccccccEEEEEcccccccccHHHHHHHHccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHcccEEEEEcccEEEccccccccccc
ccccccccccccccccEEEEEcccccccccHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHccc
msplstptnpnstekHMVHWFRkglrmhdnpslreglkgcttFRCVfildpwfagssnvgiNKWRFLLQCLEDLDINLRKLNSRlfvirgqpadiLPKLFKEWKTtcltfeedpepfgkvrdQNIMTLCRELNIEVIARVSHtlydldqlkpdsrg
msplstptnpnstekHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLtfeedpepfgkvRDQNIMTLCRELNIEVIARVshtlydldqlkpdsrg
MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG
****************MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDL*********
******************HWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPD***
*************EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG
**************KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query156 2.2.26 [Sep-21-2011]
Q8QG61 621 Cryptochrome-1 OS=Gallus yes N/A 0.865 0.217 0.718 2e-55
Q5IZC5 620 Cryptochrome-1 OS=Erithac N/A N/A 0.865 0.217 0.718 2e-55
P97784 606 Cryptochrome-1 OS=Mus mus yes N/A 0.865 0.222 0.718 2e-55
Q6ZZY0 620 Cryptochrome-1 OS=Sylvia N/A N/A 0.865 0.217 0.718 2e-55
Q32Q86 588 Cryptochrome-1 OS=Rattus yes N/A 0.865 0.229 0.718 2e-55
Q16526 586 Cryptochrome-1 OS=Homo sa yes N/A 0.865 0.230 0.718 3e-55
Q8WP19 586 Cryptochrome-1 OS=Macaca N/A N/A 0.865 0.230 0.718 3e-55
Q70AD6 587 Cryptochrome-1 OS=Spalax N/A N/A 0.865 0.229 0.711 1e-54
Q9R194 592 Cryptochrome-2 OS=Mus mus no N/A 0.852 0.224 0.676 1e-51
Q923I8 594 Cryptochrome-2 OS=Rattus no N/A 0.852 0.223 0.676 2e-51
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1 Back     alignment and function desciption
 Score =  214 bits (545), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/135 (71%), Positives = 111/135 (82%)

Query: 16  HMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLD 75
           + VHWFRKGLR+HDNP+LRE ++G  T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD
Sbjct: 4   NAVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVGINRWRFLLQCLEDLD 63

Query: 76  INLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIE 135
            NLRKLNSRLFVIRGQPAD+ P+LFKEW    L+ E D EPFGK RD  I  L  E  +E
Sbjct: 64  ANLRKLNSRLFVIRGQPADVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGVE 123

Query: 136 VIARVSHTLYDLDQL 150
           VI R+SHTLYDLD++
Sbjct: 124 VIVRISHTLYDLDKI 138
Blue light-dependent regulator of the circadian feedback loop. Inhibits CLOCK|NPAS2-ARNTL E box-mediated transcription. Acts, in conjunction with CRY2, in maintaining period length and circadian rhythmicity. Has no photolyase activity. Capable of translocating circadian clock core proteins such as PER proteins to the nucleus. May inhibit CLOCK|NPAS2-ARNTL transcriptional activity through stabilizing the unphosphorylated form of ARNTL.
Gallus gallus (taxid: 9031)
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2 Back     alignment and function description
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1 Back     alignment and function description
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1 Back     alignment and function description
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1 Back     alignment and function description
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1 Back     alignment and function description
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1 Back     alignment and function description
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
347971574 1056 AGAP004261-PA [Anopheles gambiae str. PE 0.878 0.129 0.810 4e-66
78191297 961 cryptochrome 2 [Anopheles gambiae] 0.878 0.142 0.810 1e-65
312372433 1043 hypothetical protein AND_20159 [Anophele 0.878 0.131 0.795 1e-64
170070074 828 cryptochrome 2 [Culex quinquefasciatus] 0.916 0.172 0.776 4e-63
170059953 789 cryptochrome-1 [Culex quinquefasciatus] 0.916 0.181 0.776 5e-63
429544803 586 cryptochrome 2 [Rhyparobia maderae] 0.923 0.245 0.805 6e-63
77166866 742 cryptochrome 2 [Danaus plexippus] gi|357 0.878 0.184 0.810 6e-63
340720203 574 PREDICTED: cryptochrome-1-like [Bombus t 0.935 0.254 0.768 8e-63
350420124 574 PREDICTED: cryptochrome-1 [Bombus impati 0.935 0.254 0.768 8e-63
307207594 558 Cryptochrome-1 [Harpegnathos saltator] 0.910 0.254 0.795 1e-62
>gi|347971574|ref|XP_313179.4| AGAP004261-PA [Anopheles gambiae str. PEST] gi|347971576|ref|XP_003436763.1| AGAP004261-PB [Anopheles gambiae str. PEST] gi|347971578|ref|XP_003436764.1| AGAP004261-PC [Anopheles gambiae str. PEST] gi|333468729|gb|EAA44753.4| AGAP004261-PA [Anopheles gambiae str. PEST] gi|333468730|gb|EGK97037.1| AGAP004261-PB [Anopheles gambiae str. PEST] gi|333468731|gb|EGK97038.1| AGAP004261-PC [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  255 bits (652), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 111/137 (81%), Positives = 125/137 (91%)

Query: 14  EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLED 73
           +KH VHWFRKGLR+HDNP+LREGL+G  TFRCVFI+DPWFAGSSNVGINKWRFLLQCL+D
Sbjct: 98  DKHTVHWFRKGLRLHDNPALREGLRGARTFRCVFIIDPWFAGSSNVGINKWRFLLQCLDD 157

Query: 74  LDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELN 133
           LD NLRKLNSRLFVIRGQPAD LPKLFKEW TTCLTFEEDPEPFG+VRD NI  +C+EL 
Sbjct: 158 LDRNLRKLNSRLFVIRGQPADALPKLFKEWGTTCLTFEEDPEPFGRVRDHNISEMCKELG 217

Query: 134 IEVIARVSHTLYDLDQL 150
           IEVI+  SHTLY+L+++
Sbjct: 218 IEVISAASHTLYNLERI 234

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|78191297|gb|ABB29887.1| cryptochrome 2 [Anopheles gambiae] Back     alignment and taxonomy information
>gi|312372433|gb|EFR20390.1| hypothetical protein AND_20159 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|170070074|ref|XP_001869456.1| cryptochrome 2 [Culex quinquefasciatus] gi|167866000|gb|EDS29383.1| cryptochrome 2 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|170059953|ref|XP_001865587.1| cryptochrome-1 [Culex quinquefasciatus] gi|167878532|gb|EDS41915.1| cryptochrome-1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|429544803|gb|AGA01579.1| cryptochrome 2 [Rhyparobia maderae] Back     alignment and taxonomy information
>gi|77166866|gb|ABA62409.1| cryptochrome 2 [Danaus plexippus] gi|357623166|gb|EHJ74426.1| cryptochrome 2 [Danaus plexippus] Back     alignment and taxonomy information
>gi|340720203|ref|XP_003398531.1| PREDICTED: cryptochrome-1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350420124|ref|XP_003492407.1| PREDICTED: cryptochrome-1 [Bombus impatiens] gi|129593762|gb|ABO31112.1| cryptochrome 2 protein [Bombus impatiens] Back     alignment and taxonomy information
>gi|307207594|gb|EFN85258.1| Cryptochrome-1 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
UNIPROTKB|F1MXB2 587 CRY1 "Uncharacterized protein" 0.852 0.226 0.729 4.4e-52
UNIPROTKB|E2RMX4 587 CRY1 "Uncharacterized protein" 0.852 0.226 0.729 4.4e-52
UNIPROTKB|Q16526 586 CRY1 "Cryptochrome-1" [Homo sa 0.852 0.226 0.729 4.4e-52
UNIPROTKB|F1SPQ5 589 CRY1 "Uncharacterized protein" 0.852 0.225 0.729 4.4e-52
UNIPROTKB|Q8WP19 586 CRY1 "Cryptochrome-1" [Macaca 0.852 0.226 0.729 4.4e-52
MGI|MGI:1270841 606 Cry1 "cryptochrome 1 (photolya 0.852 0.219 0.729 4.4e-52
RGD|735083 588 Cry1 "cryptochrome 1 (photolya 0.852 0.226 0.729 4.4e-52
UNIPROTKB|Q32Q86 588 Cry1 "Cryptochrome-1" [Rattus 0.852 0.226 0.729 4.4e-52
UNIPROTKB|E1C2Z9 624 CRY1 "Cryptochrome-1" [Gallus 0.852 0.213 0.729 7.2e-52
UNIPROTKB|F1NYE9 621 CRY1 "Cryptochrome-1" [Gallus 0.852 0.214 0.729 7.2e-52
UNIPROTKB|F1MXB2 CRY1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 97/133 (72%), Positives = 111/133 (83%)

Query:    18 VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
             VHWFRKGLR+HDNP+L+E ++G  T RCV+ILDPWFAGSSNVGIN+WRFLLQCLEDLD N
Sbjct:     6 VHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLEDLDAN 65

Query:    78 LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
             LRKLNSRLFVIRGQPAD+ P+LFKEW  T L+ E D EPFGK RD  I  L  E  +EVI
Sbjct:    66 LRKLNSRLFVIRGQPADVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGVEVI 125

Query:   138 ARVSHTLYDLDQL 150
              R+SHTLYDLD++
Sbjct:   126 VRISHTLYDLDKI 138
GO:0042752 "regulation of circadian rhythm" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0007623 "circadian rhythm" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0003690 "double-stranded DNA binding" evidence=IEA
GO:0000988 "protein binding transcription factor activity" evidence=IEA
GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0003913 "DNA photolyase activity" evidence=IEA
UNIPROTKB|E2RMX4 CRY1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q16526 CRY1 "Cryptochrome-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPQ5 CRY1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WP19 CRY1 "Cryptochrome-1" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:1270841 Cry1 "cryptochrome 1 (photolyase-like)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|735083 Cry1 "cryptochrome 1 (photolyase-like)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q32Q86 Cry1 "Cryptochrome-1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C2Z9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYE9 CRY1 "Cryptochrome-1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q16526CRY1_HUMANNo assigned EC number0.71850.86530.2303yesN/A
Q8QG61CRY1_CHICKNo assigned EC number0.71850.86530.2173yesN/A
P97784CRY1_MOUSENo assigned EC number0.71850.86530.2227yesN/A
Q32Q86CRY1_RATNo assigned EC number0.71850.86530.2295yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
pfam00875164 pfam00875, DNA_photolyase, DNA photolyase 2e-48
COG0415 461 COG0415, PhrB, Deoxyribodipyrimidine photolyase [D 5e-20
TIGR02765 429 TIGR02765, crypto_DASH, cryptochrome, DASH family 1e-17
TIGR03556 471 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine 2e-13
TIGR02766 475 TIGR02766, crypt_chrom_pln, cryptochrome, plant fa 2e-05
>gnl|CDD|216167 pfam00875, DNA_photolyase, DNA photolyase Back     alignment and domain information 
 Score =  153 bits (389), Expect = 2e-48
 Identities = 53/138 (38%), Positives = 75/138 (54%)

Query: 17  MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDI 76
           ++ WFR+ LR+HDNP+L    +       VFILDP   GS  +G  +  FLL+ L DLD 
Sbjct: 1   VLVWFRRDLRLHDNPALAAAAESGAPVIPVFILDPAQLGSHKLGAARRWFLLESLADLDE 60

Query: 77  NLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEV 136
           +L KL  RL V RG PA++LP+L KE   + + +  D EP+ + RD  +    RE  IEV
Sbjct: 61  SLAKLGIRLVVRRGDPAEVLPELAKELGASAVYWNRDYEPYERQRDAAVKEALREAGIEV 120

Query: 137 IARVSHTLYDLDQLKPDS 154
            +   H L    ++    
Sbjct: 121 HSFDDHLLVPPGEVLTKK 138

This domain binds a light harvesting cofactor. Length = 164
>gnl|CDD|223492 COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|234002 TIGR02765, crypto_DASH, cryptochrome, DASH family Back     alignment and domain information
>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>gnl|CDD|131813 TIGR02766, crypt_chrom_pln, cryptochrome, plant family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 156
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 100.0
TIGR02765 429 crypto_DASH cryptochrome, DASH family. Photolyases 100.0
TIGR03556 471 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 100.0
TIGR02766 475 crypt_chrom_pln cryptochrome, plant family. At lea 100.0
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 100.0
PRK10674 472 deoxyribodipyrimidine photolyase; Provisional 100.0
COG0415 461 PhrB Deoxyribodipyrimidine photolyase [DNA replica 100.0
KOG0133|consensus 531 99.94
PF04244224 DPRP: Deoxyribodipyrimidine photo-lyase-related pr 97.47
COG3046 505 Uncharacterized protein related to deoxyribodipyri 96.18
cd01994194 Alpha_ANH_like_IV This is a subfamily of Adenine n 95.98
TIGR00289222 conserved hypothetical protein TIGR00289. Homologo 95.91
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 95.16
TIGR00290223 MJ0570_dom MJ0570-related uncharacterized domain. 95.07
cd00293130 USP_Like Usp: Universal stress protein family. The 94.52
PRK09982142 universal stress protein UspD; Provisional 94.44
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 94.36
COG2102223 Predicted ATPases of PP-loop superfamily [General 94.33
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 93.88
PRK15005144 universal stress protein F; Provisional 93.73
TIGR03679218 arCOG00187 arCOG00187 universal archaeal metal-bin 93.54
PRK10116142 universal stress protein UspC; Provisional 92.71
PF01902218 ATP_bind_4: ATP-binding region; InterPro: IPR00276 92.7
PRK15456142 universal stress protein UspG; Provisional 92.56
TIGR01088141 aroQ 3-dehydroquinate dehydratase, type II. This m 91.93
cd01987124 USP_OKCHK USP domain is located between the N-term 91.4
TIGR01490202 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol 89.73
PF1008797 DUF2325: Uncharacterized protein conserved in bact 88.42
PF00582140 Usp: Universal stress protein family; InterPro: IP 87.8
PF00702215 Hydrolase: haloacid dehalogenase-like hydrolase; I 87.66
PRK13015146 3-dehydroquinate dehydratase; Reviewed 87.45
PRK05395146 3-dehydroquinate dehydratase; Provisional 87.04
cd00466140 DHQase_II Dehydroquinase (DHQase), type II. Dehydr 86.95
PRK10490 895 sensor protein KdpD; Provisional 86.93
PF01220140 DHquinase_II: Dehydroquinase class II; InterPro: I 86.68
PRK14719 360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 86.64
COG0560212 SerB Phosphoserine phosphatase [Amino acid transpo 86.05
cd06294 270 PBP1_ycjW_transcription_regulator_like Ligand-bind 85.31
PRK05265239 pyridoxine 5'-phosphate synthase; Provisional 84.87
COG0796 269 MurI Glutamate racemase [Cell envelope biogenesis, 84.18
COG2217713 ZntA Cation transport ATPase [Inorganic ion transp 83.79
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 83.32
PF02571 249 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: 83.01
TIGR00067 251 glut_race glutamate racemase. The most closely rel 82.79
cd06279 283 PBP1_LacI_like_3 Ligand-binding domain of uncharac 82.49
cd01427139 HAD_like Haloacid dehalogenase-like hydrolases. Th 81.84
PRK11175305 universal stress protein UspE; Provisional 81.36
TIGR01497 675 kdpB K+-transporting ATPase, B subunit. One sequen 81.07
PF03740239 PdxJ: Pyridoxal phosphate biosynthesis protein Pdx 80.62
PRK14010 673 potassium-transporting ATPase subunit B; Provision 80.53
PF05368 233 NmrA: NmrA-like family; InterPro: IPR008030 NmrA i 80.33
TIGR01512536 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo 80.18
PRK01122 679 potassium-transporting ATPase subunit B; Provision 80.14
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information 
Probab=100.00  E-value=7.8e-41  Score=247.09  Aligned_cols=140  Identities=34%  Similarity=0.600  Sum_probs=120.7

Q ss_pred             EEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEEcChHHHH
Q psy6650          17 MVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADIL   96 (156)
Q Consensus        17 ~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l   96 (156)
                      +|||||+|||++||+||++|++.+.+|+||||+||........|.+|++|++|||.+|+++|+++|++|+++.|++.++|
T Consensus         1 ~l~Wfr~DLRl~DN~aL~~A~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l   80 (165)
T PF00875_consen    1 VLVWFRRDLRLHDNPALHAAAQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVL   80 (165)
T ss_dssp             EEEEESS--SSTT-HHHHHHHHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHH
T ss_pred             CEEEEcCCCchhhhHHHHHHHHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHH
Confidence            59999999999999999999999999999999999733222459999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCCC
Q psy6650          97 PKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG  156 (156)
Q Consensus        97 ~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~~  156 (156)
                      ++|+++++|++||++++|++++++|+++|++.|++.||.++.+++++|++|+++.+++|+
T Consensus        81 ~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~L~~~~~i~~~~~~  140 (165)
T PF00875_consen   81 PELAKEYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHTLVPPDDIPKKDGE  140 (165)
T ss_dssp             HHHHHHHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SSSS-HHHCHSTTSS
T ss_pred             HHHHHhcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcEEEeccccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999888764

; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
>TIGR02765 crypto_DASH cryptochrome, DASH family Back     alignment and domain information
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type Back     alignment and domain information
>TIGR02766 crypt_chrom_pln cryptochrome, plant family Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>PRK10674 deoxyribodipyrimidine photolyase; Provisional Back     alignment and domain information
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0133|consensus Back     alignment and domain information
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases Back     alignment and domain information
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only] Back     alignment and domain information
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR00289 conserved hypothetical protein TIGR00289 Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only] Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal Back     alignment and domain information
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490 Back     alignment and domain information
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase) Back     alignment and domain information
>PRK13015 3-dehydroquinate dehydratase; Reviewed Back     alignment and domain information
>PRK05395 3-dehydroquinate dehydratase; Provisional Back     alignment and domain information
>cd00466 DHQase_II Dehydroquinase (DHQase), type II Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4 Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism] Back     alignment and domain information
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors Back     alignment and domain information
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional Back     alignment and domain information
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt Back     alignment and domain information
>TIGR00067 glut_race glutamate racemase Back     alignment and domain information
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>TIGR01497 kdpB K+-transporting ATPase, B subunit Back     alignment and domain information
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) Back     alignment and domain information
>PRK14010 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA Back     alignment and domain information
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase Back     alignment and domain information
>PRK01122 potassium-transporting ATPase subunit B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
3cvu_A 543 Drosophila Melanogaster (6-4) Photolyase Bound To D 1e-34
3cvx_A 543 Drosophila Melanogaster (6-4) Photolyase H369m Muta 1e-34
3cvw_A 543 Drosophila Melanogaster (6-4) Photolyase H365n Muta 1e-34
3fy4_A 537 (6-4) Photolyase Crystal Structure Length = 537 2e-27
4gu5_A 539 Structure Of Full-Length Drosophila Cryptochrome Le 4e-24
1tez_A 474 Complex Between Dna And The Dna Photolyase From Ana 8e-12
1owl_A 484 Structure Of Apophotolyase From Anacystis Nidulans 9e-12
2e0i_A 440 Crystal Structure Of Archaeal Photolyase From Sulfo 1e-09
1np7_A 489 Crystal Structure Analysis Of Synechocystis Sp. Pcc 2e-08
2j4d_A 525 Cryptochrome 3 From Arabidopsis Thaliana Length = 5 2e-07
2ijg_X 526 Crystal Structure Of Cryptochrome 3 From Arabidopsi 2e-07
2vtb_B 525 Structure Of Cryptochrome 3 - Dna Complex Length = 2e-07
1iqr_A 420 Crystal Structure Of Dna Photolyase From Thermus Th 5e-04
>pdb|3CVU|A Chain A, Drosophila Melanogaster (6-4) Photolyase Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  141 bits (356), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/142 (47%), Positives = 87/142 (61%), Gaps = 6/142 (4%)
Query: 11  NSTEKHMVHWFRKGLRMHDNPSLRE------GLKGCTTFRCVFILDPWFAGSSNVGINKW 64
           +S    +VHWFRKGLR+HDNP+L           G    R +FILDP       VG N+W
Sbjct: 25  DSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRW 84
Query: 65  RFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQN 124
           RFL Q LEDLD  LRKLNSRLFV+RG+PA++ P++FK W+   LTFE D EP+   RD  
Sbjct: 85  RFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAA 144
Query: 125 IMTLCRELNIEVIARVSHTLYD 146
           +  L +   + V    SHT+Y+
Sbjct: 145 VQKLAKAEGVRVETHCSHTIYN 166
>pdb|3CVX|A Chain A, Drosophila Melanogaster (6-4) Photolyase H369m Mutant Bound To Ds Dna With A T-T (6-4) Photolesion Length = 543 Back     alignment and structure
>pdb|3CVW|A Chain A, Drosophila Melanogaster (6-4) Photolyase H365n Mutant Bound To Ds Dna With A T-T (6-4) Photolesion And Cofactor F0 Length = 543 Back     alignment and structure
>pdb|3FY4|A Chain A, (6-4) Photolyase Crystal Structure Length = 537 Back     alignment and structure
>pdb|4GU5|A Chain A, Structure Of Full-Length Drosophila Cryptochrome Length = 539 Back     alignment and structure
>pdb|1TEZ|A Chain A, Complex Between Dna And The Dna Photolyase From Anacystis Nidulans Length = 474 Back     alignment and structure
>pdb|1OWL|A Chain A, Structure Of Apophotolyase From Anacystis Nidulans Length = 484 Back     alignment and structure
>pdb|2E0I|A Chain A, Crystal Structure Of Archaeal Photolyase From Sulfolobus Tokodaii With Two Fad Molecules: Implication Of A Novel Light-Harvesting Cofactor Length = 440 Back     alignment and structure
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803 Cryptochrome Length = 489 Back     alignment and structure
>pdb|2J4D|A Chain A, Cryptochrome 3 From Arabidopsis Thaliana Length = 525 Back     alignment and structure
>pdb|2IJG|X Chain X, Crystal Structure Of Cryptochrome 3 From Arabidopsis Thaliana Length = 526 Back     alignment and structure
>pdb|2VTB|B Chain B, Structure Of Cryptochrome 3 - Dna Complex Length = 525 Back     alignment and structure
>pdb|1IQR|A Chain A, Crystal Structure Of Dna Photolyase From Thermus Thermophilus Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 1e-56
3fy4_A 537 6-4 photolyase; DNA repair, clock cryptochrome; HE 1e-55
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 2e-52
2j4d_A 525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 4e-48
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 4e-42
1owl_A 484 Photolyase, deoxyribodipyrimidine photolyase; DNA 1e-29
2e0i_A 440 432AA long hypothetical deoxyribodipyrimidine PHO; 3e-26
1u3d_A 509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 3e-26
2j07_A 420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 4e-24
1dnp_A 471 DNA photolyase; DNA repair, electron transfer, exc 3e-23
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 1e-22
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 2e-18
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Length = 543 Back     alignment and structure
 Score =  184 bits (469), Expect = 1e-56
 Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 6/161 (3%)

Query: 2   SPLSTPTNPNSTEKHMVHWFRKGLRMHDNPSLREGLKGC------TTFRCVFILDPWFAG 55
           S        +S    +VHWFRKGLR+HDNP+L                R +FILDP    
Sbjct: 16  SLYKKAGLMDSQRSTLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILD 75

Query: 56  SSNVGINKWRFLLQCLEDLDINLRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPE 115
              VG N+WRFL Q LEDLD  LRKLNSRLFV+RG+PA++ P++FK W+   LTFE D E
Sbjct: 76  WMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVVRGKPAEVFPRIFKSWRVEMLTFETDIE 135

Query: 116 PFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG 156
           P+   RD  +  L +   + V    SHT+Y+ + +   + G
Sbjct: 136 PYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLG 176
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Length = 537 Back     alignment and structure
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Length = 525 Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Length = 489 Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Length = 484 Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Length = 440 Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Length = 509 Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Length = 420 Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Length = 471 Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Length = 482 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Length = 506 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
3fy4_A 537 6-4 photolyase; DNA repair, clock cryptochrome; HE 100.0
3tvs_A 538 Cryptochrome-1; circadian clock light entrainment, 100.0
2j4d_A 525 Cryptochrome 3, cryptochrome DASH; DNA-binding pro 100.0
1owl_A 484 Photolyase, deoxyribodipyrimidine photolyase; DNA 100.0
1np7_A 489 DNA photolyase; protein with FAD cofactor; HET: DN 100.0
3umv_A 506 Deoxyribodipyrimidine photo-lyase; CPD cyclobutane 100.0
2e0i_A 440 432AA long hypothetical deoxyribodipyrimidine PHO; 100.0
1u3d_A 509 Cryptochrome 1 apoprotein; photolyase, AMPPNP, sig 100.0
1dnp_A 471 DNA photolyase; DNA repair, electron transfer, exc 100.0
2wq7_A 543 RE11660P; lyase-DNA complex, DNA repair, DNA lesio 100.0
2j07_A 420 Deoxyribodipyrimidine photo-lyase; flavoprotein, n 99.97
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 99.97
3zxs_A 522 Cryptochrome B, rscryb; lyase, cryPro, lumazine, i 98.97
3s3t_A146 Nucleotide-binding protein, universal stress PROT 95.8
3fdx_A143 Putative filament protein / universal stress PROT; 95.1
3dlo_A155 Universal stress protein; unknown function, struct 94.99
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 94.93
3tnj_A150 Universal stress protein (USP); structural genomic 94.8
3fg9_A156 Protein of universal stress protein USPA family; A 94.22
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 93.6
3rjz_A237 N-type ATP pyrophosphatase superfamily; structural 93.58
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 92.24
2z08_A137 Universal stress protein family; uncharacterized c 91.78
3fvv_A232 Uncharacterized protein; unknown function, structu 90.7
3mt0_A290 Uncharacterized protein PA1789; structural genomic 89.72
3loq_A294 Universal stress protein; structural genomics, PSI 89.68
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 89.08
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 88.24
3u80_A151 3-dehydroquinate dehydratase, type II; structural 87.87
3loq_A 294 Universal stress protein; structural genomics, PSI 87.68
3olq_A319 Universal stress protein E; structural genomics, P 87.66
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 86.64
1q77_A138 Hypothetical protein AQ_178; structural genomics, 85.68
3h75_A 350 Periplasmic sugar-binding domain protein; protein 85.2
3qk7_A 294 Transcriptional regulators; structural genomics, N 84.49
1h05_A146 3-dehydroquinate dehydratase; shikimate pathway, a 83.13
1gqo_A143 Dehydroquinase; dehydratase, lyase; 2.10A {Bacillu 82.75
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 82.61
3kip_A167 3-dehydroquinase, type II; lyase; 2.95A {Candida a 82.0
3uhf_A 274 Glutamate racemase; structural genomics, center fo 80.54
3n07_A195 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; 80.43
2uyg_A149 3-dehydroquinate dehydratase; typeii 3-dehydroquin 80.08
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.1e-37  Score=265.52  Aligned_cols=142  Identities=39%  Similarity=0.728  Sum_probs=132.6

Q ss_pred             CCeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCC---------CCCCcchHHHHHHHHHHHHHHHHhCCCe
Q psy6650          14 EKHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGS---------SNVGINKWRFLLQCLEDLDINLRKLNSR   84 (156)
Q Consensus        14 ~~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~---------~~~~~~r~~Fl~~sL~~L~~~L~~~g~~   84 (156)
                      ++++|||||+|||++||+||++|++.+.+|+||||+||.++..         ...|++|++||++||.+|+++|+++|++
T Consensus         4 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~~   83 (537)
T 3fy4_A            4 GSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGSR   83 (537)
T ss_dssp             CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4678999999999999999999998888999999999977642         2478999999999999999999999999


Q ss_pred             EEEEEcChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCC
Q psy6650          85 LFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSR  155 (156)
Q Consensus        85 L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~  155 (156)
                      |+|+.|++.++|++|+++++|++||++.+|++++++||++|++.|++.||.++++++++|++|+++.+++|
T Consensus        84 L~v~~G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~  154 (537)
T 3fy4_A           84 LLVFKGEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNG  154 (537)
T ss_dssp             CEEEESCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTS
T ss_pred             eEEEECCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999975443
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B* Back     alignment and structure
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A* Back     alignment and structure
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group} Back     alignment and structure
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii} Back     alignment and structure
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A* Back     alignment and structure
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1 Back     alignment and structure
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A* Back     alignment and structure
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A* Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides} Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0 Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A* Back     alignment and structure
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1 Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans} Back     alignment and structure
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A Back     alignment and structure
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae} Back     alignment and structure
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 156
d1owla2202 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus e 3e-16
d1np7a2204 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp. 4e-16
d1u3da2185 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Ara 2e-13
d2j07a2170 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermop 3e-10
d1dnpa2200 c.28.1.1 (A:1-200) DNA photolyase {Escherichia col 3e-09
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Length = 202 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: DNA photolyase
species: Synechococcus elongatus [TaxId: 32046]

 Score = 70.1 bits (170), Expect = 3e-16
 Identities = 34/137 (24%), Positives = 66/137 (48%)

Query: 18  VHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSSNVGINKWRFLLQCLEDLDIN 77
           + W R+ LR+ DN  L            +F LDP    S+++   +  +L  CL++L   
Sbjct: 4   LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQR 63

Query: 78  LRKLNSRLFVIRGQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVI 137
            ++  SRL +++G P  ++P+L ++ +   + + +D EP+G+ RD  +    +   I  +
Sbjct: 64  YQQAGSRLLLLQGDPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAV 123

Query: 138 ARVSHTLYDLDQLKPDS 154
                 L+  DQ+   S
Sbjct: 124 QLWDQLLHSPDQILSGS 140
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Length = 204 Back     information, alignment and structure
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 185 Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Length = 170 Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 100.0
d1u3da2185 Cryptochrome {Thale cress (Arabidopsis thaliana) [ 100.0
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 100.0
d1dnpa2200 DNA photolyase {Escherichia coli [TaxId: 562]} 100.0
d2j07a2170 DNA photolyase {Thermus thermophilus [TaxId: 274]} 100.0
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 95.03
d2d13a1226 Hypothetical protein PH1257 {Archaeon Pyrococcus h 94.87
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 94.75
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 93.34
d2b8ea1135 Cation-transporting ATPase {Archaeon Archaeoglobus 91.32
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 90.51
d2c4va1158 Type II 3-dehydroquinate dehydratase {Helicobacter 89.13
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 88.98
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 88.85
d1b74a1105 Glutamate racemase {Aquifex pyrophilus [TaxId: 271 85.95
d2ioja1120 Hypothetical protein AF1212 {Archaeoglobus fulgidu 82.48
d1b43a2219 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 81.91
d1h05a_144 Type II 3-dehydroquinate dehydratase {Mycobacteriu 81.82
d1nnla_217 Phosphoserine phosphatase {Human (Homo sapiens) [T 81.51
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Cryptochrome/photolyase, N-terminal domain
superfamily: Cryptochrome/photolyase, N-terminal domain
family: Cryptochrome/photolyase, N-terminal domain
domain: Cryptochrome
species: Synechocystis sp., pcc 6803 [TaxId: 1143]

Probab=100.00  E-value=2.1e-42  Score=260.35  Aligned_cols=142  Identities=23%  Similarity=0.402  Sum_probs=134.3

Q ss_pred             CeEEEEecCCCCccccHHHHHHHhcCCcceEEEEeCCCCcCCC-----CCCcchHHHHHHHHHHHHHHHHhCCCeEEEEE
Q psy6650          15 KHMVHWFRKGLRMHDNPSLREGLKGCTTFRCVFILDPWFAGSS-----NVGINKWRFLLQCLEDLDINLRKLNSRLFVIR   89 (156)
Q Consensus        15 ~~~l~Wfr~DLRl~DN~aL~~A~~~~~~vi~vfi~d~~~~~~~-----~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~   89 (156)
                      .++|||||+|||++||+||.+|++.+++|+||||+||.++...     ..|++|.+|+.+||.+|+++|+++|++|++++
T Consensus         6 ~~~lvWfr~DLRl~DN~aL~~A~~~~~~vi~vyi~dp~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~g~~L~v~~   85 (204)
T d1np7a2           6 PTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTT   85 (204)
T ss_dssp             CEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEeCCCCccccHHHHHHHHhcCCcEEEEEEECchHhcCcccccccccHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence            5689999999999999999999998889999999999876532     46889999999999999999999999999999


Q ss_pred             cChHHHHHHHHHHcCcCeEEEcccCCchhHHHHHHHHHHHHhCCceEEEecCCeeecCCCCCCCCCC
Q psy6650          90 GQPADILPKLFKEWKTTCLTFEEDPEPFGKVRDQNIMTLCRELNIEVIARVSHTLYDLDQLKPDSRG  156 (156)
Q Consensus        90 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~d~~v~~~l~~~~i~~~~~~~~~L~~~~~l~~~~~~  156 (156)
                      |++.++|++|+++++|++||++++|++++++||++|.+.|++.||.++.+++++|++|+++.++.|+
T Consensus        86 G~~~~~l~~l~~~~~i~~V~~n~~~~~~e~~rd~~v~~~l~~~~i~~~~~~~~~L~~p~~l~~~~~~  152 (204)
T d1np7a2          86 GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQD  152 (204)
T ss_dssp             SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGG
T ss_pred             hhhHHHHHHHHHHhhhhheeeeccccHHHHHHHHHHhhhhccceeeeEeccCccccChhhccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999998763
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure
>d2ioja1 c.98.2.2 (A:206-325) Hypothetical protein AF1212 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure