Psyllid ID: psy6684

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MYLLEGKKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR
Secondary Structure (PSIPRED)
ccccccccHHHccccHHHHHHHHccccEEEEccccccccccEEEEEcccccccEEEEHHHHHHHcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHccEEEEEEEcccccccccEEEEEEcccccccEEEEEEHHHHccccEEEEEEccc
Coil and Loop (DISEMBL)
myllegkkelyLKENWDVQRavtsgqclykissytsfpmhdfyrcqtchttdrnaicvncikschaghdvaFIRHDR
Flexible Loop (DISEMBL)
myllegkkELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSchaghdvaFIRHDR
Low Complexity Region (SEG)
MyllegkkelylkeNWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR
Disordered region (IsUnstruct)
******KKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI****
Disordered Region (DISOPRED)
*********L***ENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH**
Disordered Region (DISEMBL)
MYLLEGKKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR
Disordered Region (DISPRO)
MYL**GKKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRH**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYLLEGKKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q86XK2	927	F-box only protein 11 OS=	yes	N/A	0.779	0.064	0.816	3e-27
Q7TSL3	843	F-box only protein 11 OS=	yes	N/A	0.779	0.071	0.816	4e-27
Q7TPD1	843	F-box only protein 11 OS=	yes	N/A	0.779	0.071	0.816	4e-27
Q54QG5	5875	Probable E3 ubiquitin-pro	yes	N/A	0.974	0.012	0.325	5e-05
B9G2A8	4965	Auxin transport protein B	yes	N/A	0.831	0.012	0.338	0.0002
Q9SRU2	5098	Auxin transport protein B	yes	N/A	0.831	0.012	0.338	0.0003

>sp|Q86XK2|FBX11_HUMAN F-box only protein 11 OS=Homo sapiens GN=FBXO11 PE=1 SV=3

 Score =  120 bits (300), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/60 (81%), Positives = 55/60 (91%)

Query: 18  VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
           +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FIRHDR
Sbjct: 826 IEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDR 885

Substrate recognition component of the a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Binds to and neddylates phosphorylated p53/TP53, inhibiting its transcriptional activity. SCF(FBXO11) does not seem to direct ubiquitination of TP53.
Homo sapiens (taxid: 9606)

>sp|Q7TSL3|FBX11_RAT F-box only protein 11 OS=Rattus norvegicus GN=Fbxo11 PE=2 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/60 (81%), Positives = 55/60 (91%)

Query: 18  VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
           +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FIRHDR
Sbjct: 742 IEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDR 801

Substrate recognition component of the a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Binds to and neddylates phosphorylated p53/TP53, inhibiting its transcriptional activity. SCF(FBXO11) does not seem to direct ubiquitination of TP53.

Rattus norvegicus (taxid: 10116)

>sp|Q7TPD1|FBX11_MOUSE F-box only protein 11 OS=Mus musculus GN=Fbxo11 PE=2 SV=2

 Score =  119 bits (299), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/60 (81%), Positives = 55/60 (91%)

Query: 18  VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR 77
           +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FIRHDR
Sbjct: 742 IEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDR 801

Substrate recognition component of the a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Binds to and neddylates phosphorylated p53/TP53, inhibiting its transcriptional activity. SCF(FBXO11) does not seem to direct ubiquitination of TP53.

Mus musculus (taxid: 10090)

>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium discoideum GN=DDB_G0283893 PE=3 SV=2

 Score = 46.6 bits (109), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 2    YLLEGKKELYLKENW----DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAIC 57
            YL E +K +   EN     D +R ++S  C Y  +       H +Y C TC        C
Sbjct: 2015 YLSEDEKVVNGNENTGEEDDEERKLSSKVCTYTFTKNDYIDQH-WYFCYTCGLKFSEGCC 2073

Query: 58   VNCIKSCHAGHDVAFIRHDR 77
              C+K CH GH V++ R+ R
Sbjct: 2074 SVCVKVCHKGHQVSYSRYSR 2093

Probable E3 ubiquitin-protein ligase.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B9G2A8|BIG_ORYSJ Auxin transport protein BIG OS=Oryza sativa subsp. japonica GN=Os09g0247700 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 13   KENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAF 72
            +E+ + +RA+ +  C +  SS ++F    +Y C TC  T     C  C K CH GH V +
Sbjct: 1419 EEDGNSERALATKVCTFT-SSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHQGHRVVY 1477

Query: 73   IRHDR 77
             R  R
Sbjct: 1478 SRSSR 1482

Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SRU2|BIG_ARATH Auxin transport protein BIG OS=Arabidopsis thaliana GN=BIG PE=1 SV=2

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 13   KENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAF 72
            +E+ + +R + S  C +  SS ++F    +Y C TC  T     C  C K CH GH V +
Sbjct: 1561 EEDANSERYLASKVCTFT-SSGSNFMEQHWYFCYTCDLTVSKGCCSVCAKVCHRGHRVVY 1619

Query: 73   IRHDR 77
             R  R
Sbjct: 1620 SRSSR 1624

Required for auxin efflux and polar auxin transport (PAT) influencing auxin-mediated developmental responses (e.g. cell elongation, apical dominance, lateral root production, inflorescence architecture, general growth and development). Controls the elongation of the pedicels and stem internodes through auxin action. Involved in the expression modulation of light-regulated genes. Represses CAB1 and CAB3 genes expression in etiolated seedlings. Confers sensitivity to the auxin transport inhibitors N-1-naphthylphthalamic acid (NPA), 2-carboxyphenyl-3-phenylpropane-l,2-dione (CPD), and methyl-2-chloro-9-hydroxyfluorene-9-carboxylate (CFM). Influences the polarized subcellular distribution of the auxin transporter PIN1 in response to auxin transport inhibitors. Plays a role in the regulation of responses to phytohormones such as auxin, cytokinins, ethylene and gibberellic acid (GA), particularly during light-mediated stimuli (e.g. shade ovoidance, etiolation). Required for pericycle cell activation to form lateral root primordia (LRP) in both high and low phosphate P conditions. Necessary for the plant-growth promotion and lateral root development mediated by the fungus Trichoderma virens.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
195572137	1183	GD20755 [Drosophila simulans] gi|1941999	0.792	0.051	0.885	2e-29
195330247	1183	GM26208 [Drosophila sechellia] gi|194120	0.792	0.051	0.885	2e-29
33636651	1124	GM01353p [Drosophila melanogaster]	0.792	0.054	0.885	2e-29
195499617	1181	GE24725 [Drosophila yakuba] gi|194183126	0.792	0.051	0.885	2e-29
194902666	1177	GG17321 [Drosophila erecta] gi|190652444	0.792	0.051	0.885	2e-29
24645532	1182	FBX011 ortholog, isoform A [Drosophila m	0.792	0.051	0.885	2e-29
195454322	1170	GK14511 [Drosophila willistoni] gi|19417	0.792	0.052	0.885	2e-29
195037623	1202	GH18333 [Drosophila grimshawi] gi|193894	0.792	0.050	0.885	3e-29
194742211	1185	GF17149 [Drosophila ananassae] gi|190626	0.792	0.051	0.885	3e-29
198451988	1175	GA21805 [Drosophila pseudoobscura pseudo	0.792	0.051	0.885	4e-29

>gi|195572137|ref|XP_002104053.1| GD20755 [Drosophila simulans] gi|194199980|gb|EDX13556.1| GD20755 [Drosophila simulans]

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1081 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1140

Query: 77   R 77
            R
Sbjct: 1141 R 1141

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195330247|ref|XP_002031816.1| GM26208 [Drosophila sechellia] gi|194120759|gb|EDW42802.1| GM26208 [Drosophila sechellia]

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1081 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1140

Query: 77   R 77
            R
Sbjct: 1141 R 1141

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33636651|gb|AAQ23623.1| GM01353p [Drosophila melanogaster]

 Score =  133 bits (334), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1022 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1081

Query: 77   R 77
            R
Sbjct: 1082 R 1082

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195499617|ref|XP_002097025.1| GE24725 [Drosophila yakuba] gi|194183126|gb|EDW96737.1| GE24725 [Drosophila yakuba]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1079 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1138

Query: 77   R 77
            R
Sbjct: 1139 R 1139

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194902666|ref|XP_001980741.1| GG17321 [Drosophila erecta] gi|190652444|gb|EDV49699.1| GG17321 [Drosophila erecta]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1075 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1134

Query: 77   R 77
            R
Sbjct: 1135 R 1135

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24645532|ref|NP_649954.1| FBX011 ortholog, isoform A [Drosophila melanogaster] gi|442618351|ref|NP_001262441.1| FBX011 ortholog, isoform B [Drosophila melanogaster] gi|7299263|gb|AAF54459.1| FBX011 ortholog, isoform A [Drosophila melanogaster] gi|440217278|gb|AGB95823.1| FBX011 ortholog, isoform B [Drosophila melanogaster]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1080 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1139

Query: 77   R 77
            R
Sbjct: 1140 R 1140

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454322|ref|XP_002074189.1| GK14511 [Drosophila willistoni] gi|194170274|gb|EDW85175.1| GK14511 [Drosophila willistoni]

 Score =  132 bits (333), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1068 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1127

Query: 77   R 77
            R
Sbjct: 1128 R 1128

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195037623|ref|XP_001990260.1| GH18333 [Drosophila grimshawi] gi|193894456|gb|EDV93322.1| GH18333 [Drosophila grimshawi]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1100 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1159

Query: 77   R 77
            R
Sbjct: 1160 R 1160

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194742211|ref|XP_001953599.1| GF17149 [Drosophila ananassae] gi|190626636|gb|EDV42160.1| GF17149 [Drosophila ananassae]

 Score =  132 bits (331), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1083 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1142

Query: 77   R 77
            R
Sbjct: 1143 R 1143

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198451988|ref|XP_001358574.2| GA21805 [Drosophila pseudoobscura pseudoobscura] gi|198131738|gb|EAL27715.2| GA21805 [Drosophila pseudoobscura pseudoobscura]

 Score =  132 bits (331), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query: 17   DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
            +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct: 1073 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1132

Query: 77   R 77
            R
Sbjct: 1133 R 1133

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
FB|FBgn0037760	1182	FBX011 "FBX011 ortholog" [Dros	0.792	0.051	0.885	4.3e-27
UNIPROTKB|B3KUR1	351	FBXO11 "cDNA FLJ40415 fis, clo	0.818	0.179	0.796	3.2e-26
MGI|MGI:2147134	843	Fbxo11 "F-box protein 11" [Mus	0.818	0.074	0.796	4.2e-25
RGD|727935	843	Fbxo11 "F-box protein 11" [Rat	0.818	0.074	0.796	4.2e-25
UNIPROTKB|Q7TSL3	843	Fbxo11 "F-box only protein 11"	0.818	0.074	0.796	4.2e-25
UNIPROTKB|F1PLE4	872	FBXO11 "Uncharacterized protei	0.818	0.072	0.796	4.5e-25
UNIPROTKB|F1NV53	879	FBXO11 "Uncharacterized protei	0.818	0.071	0.796	4.5e-25
ZFIN|ZDB-GENE-061103-70	879	fbxo11a "F-box protein 11a" [D	0.818	0.071	0.796	4.5e-25
UNIPROTKB|Q86XK2	927	FBXO11 "F-box only protein 11"	0.818	0.067	0.796	5e-25
UNIPROTKB|I3LN00	928	FBXO11 "Uncharacterized protei	0.818	0.067	0.796	5e-25

FB|FBgn0037760 FBX011 "FBX011 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 317 (116.6 bits), Expect = 4.3e-27, P = 4.3e-27
 Identities = 54/61 (88%), Positives = 60/61 (98%)

Query:    17 DVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD 76
             +V++AV+SGQCLYKISSYTSFPMHDFYRCQTC+TTDRNAICVNCIK+CHAGHDV FIRHD
Sbjct:  1080 EVEKAVSSGQCLYKISSYTSFPMHDFYRCQTCNTTDRNAICVNCIKNCHAGHDVEFIRHD 1139

Query:    77 R 77
             R
Sbjct:  1140 R 1140

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0070923 "siRNA loading onto RISC involved in chromatin silencing by small RNA" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0060966 "regulation of gene silencing by RNA" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|B3KUR1 FBXO11 "cDNA FLJ40415 fis, clone TESTI2038104, highly similar to F-box only protein 11" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   246 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 305

Query:    74 RHDR 77
             RHDR
Sbjct:   306 RHDR 309

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2147134 Fbxo11 "F-box protein 11" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   738 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 797

Query:    74 RHDR 77
             RHDR
Sbjct:   798 RHDR 801

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISO

GO:0035246 "peptidyl-arginine N-methylation" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|727935 Fbxo11 "F-box protein 11" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   738 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 797

Query:    74 RHDR 77
             RHDR
Sbjct:   798 RHDR 801

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0007605 "sensory perception of sound" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=ISO

GO:0035246 "peptidyl-arginine N-methylation" evidence=ISO

UNIPROTKB|Q7TSL3 Fbxo11 "F-box only protein 11" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   738 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 797

Query:    74 RHDR 77
             RHDR
Sbjct:   798 RHDR 801

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1PLE4 FBXO11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 296 (109.3 bits), Expect = 4.5e-25, P = 4.5e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   767 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 826

Query:    74 RHDR 77
             RHDR
Sbjct:   827 RHDR 830

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1NV53 FBXO11 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 296 (109.3 bits), Expect = 4.5e-25, P = 4.5e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   774 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 833

Query:    74 RHDR 77
             RHDR
Sbjct:   834 RHDR 837

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-061103-70 fbxo11a "F-box protein 11a" [Danio rerio (taxid:7955)]

 Score = 296 (109.3 bits), Expect = 4.5e-25, P = 4.5e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   774 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 833

Query:    74 RHDR 77
             RHDR
Sbjct:   834 RHDR 837

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q86XK2 FBXO11 "F-box only protein 11" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 5.0e-25, P = 5.0e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   822 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 881

Query:    74 RHDR 77
             RHDR
Sbjct:   882 RHDR 885

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=NAS

GO:0006464 "cellular protein modification process" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IDA

GO:0035246 "peptidyl-arginine N-methylation" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|I3LN00 FBXO11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 296 (109.3 bits), Expect = 5.0e-25, P = 5.0e-25
 Identities = 51/64 (79%), Positives = 57/64 (89%)

Query:    15 NWD-VQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI 73
             N D +++AV+ GQCLYKISSYTS+PMHDFYRC TC+TTDRNAICVNCIK CH GHDV FI
Sbjct:   822 NQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFI 881

Query:    74 RHDR 77
             RHDR
Sbjct:   882 RHDR 885

GO:0016274 "protein-arginine N-methyltransferase activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86XK2	FBX11_HUMAN	No assigned EC number	0.8166	0.7792	0.0647	yes	N/A
Q7TSL3	FBX11_RAT	No assigned EC number	0.8166	0.7792	0.0711	yes	N/A
Q7TPD1	FBX11_MOUSE	No assigned EC number	0.8166	0.7792	0.0711	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
pfam02207	71	pfam02207, zf-UBR, Putative zinc finger in N-recog	1e-07
smart00396	71	smart00396, ZnF_UBR1, Putative zinc finger in N-re	1e-04

>gnl|CDD|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box)

 Score = 43.9 bits (104), Expect = 1e-07
 Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 30 KISSYTSFPMHDFYRCQTCHTTDRNAICVNC-IKSCHAGHDVAFIRHDR 77
           +  Y        YRC TC       IC  C   SCH GHDV  +   R
Sbjct: 1  SVCGYVFKSGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKR 49

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71

>gnl|CDD|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway

 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 30 KISSYTSFPMHDFYRCQTCHTTDRNAICVNC-IKSCHAGHDVAF 72
           +  Y        YRC+TC       +C +C   SCH GHDV+ 
Sbjct: 1  DVCGYKFTGGEVIYRCKTCGLDPTCVLCSDCFRPSCHKGHDVSL 44

Domain is involved in recognition of N-end rule substrates in yeast Ubr1p. Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
KOG1777|consensus	625		99.94
KOG0943|consensus	3015		99.47
PF02207	71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	99.38
smart00396	71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	98.99
KOG1776|consensus	1110		98.33
KOG2752|consensus	345		97.68
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	96.15
smart00336	42	BBOX B-Box-type zinc finger.	93.87
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	93.22

>KOG1777|consensus

Probab=99.94  E-value=2.3e-27  Score=193.43  Aligned_cols=72  Identities=64%  Similarity=1.203  Sum_probs=70.4

Q ss_pred             cccccccCCchhHHhhhhCCcceEEeecCcccceeceEEeecCCCCCCeeeehhhHHhhcCCCceEEeeeCC
Q psy6684           6 GKKELYLKENWDVQRAVTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHDR   77 (77)
Q Consensus         6 ~k~~~~~~n~d~~e~al~~~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~r~sR   77 (77)
                      -+.|.||+|+|.||+|++.++|+|++|++++|||++||+|.|||++|+|+||.+|++.||+||+|+|+|+||
T Consensus       525 ~~~N~iydN~D~vekAik~GqCLfkvSs~~syPMHnFYRC~TCNttdRNAIC~nCI~~CH~GH~Vefir~Dr  596 (625)
T KOG1777|consen  525 ERGNQIYDNLDHVEKAIKKGQCLFKVSSYTSYPMHNFYRCITCNTTDRNAICVNCIKRCHEGHDVEFIRHDR  596 (625)
T ss_pred             ccccccccchHHHHHHhhcCceEEEecCCCcccccceeEeeecCCccccHHHHHHHHHhcCCCceEEEeece
Confidence            467999999999999999999999999999999999999999999999999999999999999999999998

>KOG0943|consensus

Probab=99.47  E-value=1.1e-14  Score=129.70  Aligned_cols=54  Identities=24%  Similarity=0.628  Sum_probs=50.8

Q ss_pred             hhCCcceEEeecCcccceeceEEeecCCCCCCeeeehhhHHhhcCCCceEEeeeC
Q psy6684          22 VTSGQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFIRHD   76 (77)
Q Consensus        22 l~~~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~r~s   76 (77)
                      ..+.+|+|+|+ +.++++||.|.|.||++.++..||+.||.+||+|||..+.|.|
T Consensus      1238 C~NDtCSFTWT-GadHINQDIfECkTCGL~~SLCCCsECAltCHk~HDCkLKRTS 1291 (3015)
T KOG0943|consen 1238 CCNDTCSFTWT-GADHINQDIFECKTCGLLESLCCCSECALTCHKGHDCKLKRTS 1291 (3015)
T ss_pred             EecCccceeec-chhhccchhhhhcccccchhhhhhHHHHHHhccCCccceeccC
Confidence            56799999996 5689999999999999999999999999999999999999987

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.38  E-value=2e-13  Score=84.50  Aligned_cols=47  Identities=40%  Similarity=0.912  Sum_probs=35.5

Q ss_pred             CcceEEeecCcccceeceEEeecCCCCCCeeeehhh-HHhhcCCCceEEeeeC
Q psy6684          25 GQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNC-IKSCHAGHDVAFIRHD   76 (77)
Q Consensus        25 ~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~giC~~C-a~~CH~GHdv~y~r~s   76 (77)
                      ++|+++++.+     |.+|+|.||.+.++.+||..| ++.||+||++++.+.+
T Consensus         1 ~~C~~~~~~~-----q~~y~C~tC~~~~~~~iC~~CF~~~~H~gH~~~~~~~~   48 (71)
T PF02207_consen    1 KKCTYVWTSG-----QIFYRCLTCSLDESSGICEECFANSCHEGHRVVYYRSS   48 (71)
T ss_dssp             -SS--B--TT------EEEEETTTBSSTT-BBEHHHHCTSGGGGSSEEEEE--
T ss_pred             CcCCCCCcCC-----CEEEECccCCCCCCEEEchhhCCCCCcCCCcEEEEEeC
Confidence            3688886433     999999999999999999999 9999999999999876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway

Probab=98.99  E-value=3.4e-10  Score=70.73  Aligned_cols=47  Identities=32%  Similarity=0.846  Sum_probs=39.9

Q ss_pred             CcceEEeecCcccceeceEEeecCCCCCCeeeehhhHH-hhcCCCceEEeeeC
Q psy6684          25 GQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFIRHD   76 (77)
Q Consensus        25 ~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~r~s   76 (77)
                      .+|+++++.+ ++    .|+|.||.+.+..+||..|++ .||+||++++.+.+
T Consensus         1 ~~C~~~~~~~-~~----~y~C~tC~~~~~~~iC~~Cf~~~~H~gH~~~~~~~~   48 (71)
T smart00396        1 DVCTYKFTGG-EV----IYRCKTCGLDPTCVLCSDCFRSNCHKGHDYSLKTSR   48 (71)
T ss_pred             CCCCCccCCC-CE----EEECcCCCCCCCEeEChHHCCCCCCCCCCEEEEEec
Confidence            3689997433 33    399999999999999999999 99999999988765

Domain is involved in recognition of N-end rule substrates in yeast Ubr1p

>KOG1776|consensus

Probab=98.33  E-value=2.8e-08  Score=85.75  Aligned_cols=52  Identities=4%  Similarity=-0.162  Sum_probs=47.5

Q ss_pred             hCCcceEEeecCcccceeceEEeecCCCCCCe-eeehhhHHhhcCCCceEEeee
Q psy6684          23 TSGQCLYKISSYTSFPMHDFYRCQTCHTTDRN-AICVNCIKSCHAGHDVAFIRH   75 (77)
Q Consensus        23 ~~~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~-giC~~Ca~~CH~GHdv~y~r~   75 (77)
                      ....||++ +++.-++.|+||.|+||+|..+. |.|++|+++||.||++.|+..
T Consensus       763 ~v~~~T~K-kk~q~~m~n~~~q~~k~~M~~~~gG~~kV~s~t~H~~~~i~~S~~  815 (1110)
T KOG1776|consen  763 LVRDETEK-KKKQMAMLNREKQLTKMRMKVGTGGQIKVSSRTLHNEPSIDDSDS  815 (1110)
T ss_pred             HHHHHHHh-hhhhHHHHHHHhhhhhheeeeccCceEEEeeecccCCCCccccCC
Confidence            34789999 67889999999999999999999 999999999999999999853

>KOG2752|consensus

Probab=97.68  E-value=2e-05  Score=62.58  Aligned_cols=48  Identities=25%  Similarity=0.654  Sum_probs=39.9

Q ss_pred             hCCcceEEeecCcccceeceEEeecCCCCC-CeeeehhhHHhhcCCCceEEe
Q psy6684          23 TSGQCLYKISSYTSFPMHDFYRCQTCHTTD-RNAICVNCIKSCHAGHDVAFI   73 (77)
Q Consensus        23 ~~~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d-~~giC~~Ca~~CH~GHdv~y~   73 (77)
                      +...|||.. +  .-+.|-.|.|.||-... .+|||..|+..||.||+++=.
T Consensus        39 ~~~~CTy~~-G--y~~rQ~l~sClTC~P~~~~agvC~~C~~~CH~~H~lveL   87 (345)
T KOG2752|consen   39 NPDVCTYAK-G--YKKRQALFSCLTCTPAPEMAGVCYACSLSCHDGHELVEL   87 (345)
T ss_pred             CCccccccc-C--cccccceeEeecccCChhhceeEEEeeeeecCCceeeec
Confidence            457899993 3  33469999999999987 569999999999999998744

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.15  E-value=0.005  Score=33.67  Aligned_cols=28  Identities=29%  Similarity=0.688  Sum_probs=25.3

Q ss_pred             ceEEeecCCCCCCeeeehhhHHhhcCCCceEE
Q psy6684          41 DFYRCQTCHTTDRNAICVNCIKSCHAGHDVAF   72 (77)
Q Consensus        41 ~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y   72 (77)
                      --|.|.+|+.    .+|..|+..=|+||++.-
T Consensus        14 ~~~~C~~C~~----~~C~~C~~~~H~~H~~~~   41 (42)
T PF00643_consen   14 LSLFCEDCNE----PLCSECTVSGHKGHKIVP   41 (42)
T ss_dssp             EEEEETTTTE----EEEHHHHHTSTTTSEEEE
T ss_pred             eEEEecCCCC----ccCccCCCCCCCCCEEeE
Confidence            6789999998    899999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=93.87  E-value=0.044  Score=29.23  Aligned_cols=28  Identities=29%  Similarity=0.720  Sum_probs=24.2

Q ss_pred             eceEEeecCCCCCCeeeehhhHHhhcCCCceE
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVA   71 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~   71 (77)
                      .-+|.|.+|..    .||..|...=|+||.+.
T Consensus        13 ~~~~~C~~c~~----~iC~~C~~~~H~~H~~~   40 (42)
T smart00336       13 PAEFFCEECGA----LLCRTCDEAEHRGHTVV   40 (42)
T ss_pred             ceEEECCCCCc----ccccccChhhcCCCcee
Confidence            34788999987    89999998899999885

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=93.22  E-value=0.065  Score=28.21  Aligned_cols=29  Identities=31%  Similarity=0.493  Sum_probs=23.8

Q ss_pred             eceEEeecCCCCCCeeeehhhHHhhcCCCceEE
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAF   72 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y   72 (77)
                      .-.+.|.+|..    .+|..|...=|+||.+..
T Consensus        10 ~~~~fC~~~~~----~iC~~C~~~~H~~H~~~~   38 (39)
T cd00021          10 PLSLFCETDRA----LLCVDCDLSVHSGHRRVP   38 (39)
T ss_pred             ceEEEeCccCh----hhhhhcChhhcCCCCEee
Confidence            34788999887    899999866699999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
3ny3_A	75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	96.47
3nis_A	82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	96.41
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	94.3
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	93.55
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	92.8
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	92.68
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	92.34
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	91.73
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	90.48
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	88.22
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	85.49
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	85.4

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A

Probab=96.47  E-value=0.0021  Score=40.03  Aligned_cols=36  Identities=19%  Similarity=0.552  Sum_probs=31.8

Q ss_pred             eeceEEeecCCCCCCeeeehhhHHh-hcCCCceEEee
Q psy6684          39 MHDFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFIR   74 (77)
Q Consensus        39 ~Q~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~r   74 (77)
                      ....|+|.||.+.+.-.+|..|-+. =|+||++...+
T Consensus        14 ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~   50 (75)
T 3ny3_A           14 GEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTT   50 (75)
T ss_dssp             TCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEE
T ss_pred             CCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEE
Confidence            4568999999999988999999876 79999998875

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A

Probab=96.41  E-value=0.0023  Score=40.60  Aligned_cols=46  Identities=26%  Similarity=0.584  Sum_probs=36.1

Q ss_pred             CcceEEeecCcccceeceEEeecCCCCCCeeeehhhHHh-hcCCCceEEeee
Q psy6684          25 GQCLYKISSYTSFPMHDFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFIRH   75 (77)
Q Consensus        25 ~~Ctf~~st~~~f~~Q~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~r~   75 (77)
                      +.|...+. .    ....|+|.||.+.+.-.+|..|-+. =|+||++.+...
T Consensus         9 ~~Cg~vf~-~----ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~~~~s   55 (82)
T 3nis_A            9 RNCGRKFK-I----GEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVCTDIC   55 (82)
T ss_dssp             SCCCCBCC-T----TCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEEEEEC
T ss_pred             CCCCCccc-C----CCEEEEeeccCCCCCceEchhhCCCCCcCCceEEEEEe
Confidence            45666642 2    3568999999999888999999765 399999998765

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=94.30  E-value=0.026  Score=30.92  Aligned_cols=29  Identities=28%  Similarity=0.712  Sum_probs=25.0

Q ss_pred             ceEEeecCCCCCCeeeehhhHHhhcCCCceEEe
Q psy6684          41 DFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI   73 (77)
Q Consensus        41 ~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~   73 (77)
                      --|.|.+|..    .||..|...=|+||++..+
T Consensus        17 l~lfC~~~~~----~iC~~C~~~~H~~H~~~~l   45 (50)
T 2yvr_A           17 LVLFCESCDT----LTCRDCQLNAHKDHQYQFL   45 (50)
T ss_dssp             CCEEETTTTE----EECHHHHHTTTTTCCEEET
T ss_pred             EEEEeCCCCE----EEecccCCCcCCCCceecH
Confidence            3578999876    8999999999999999765

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=93.55  E-value=0.055  Score=29.47  Aligned_cols=27  Identities=30%  Similarity=0.607  Sum_probs=22.3

Q ss_pred             EEeecCCCCCCeeeehhhHH-hhcCCCceEEe
Q psy6684          43 YRCQTCHTTDRNAICVNCIK-SCHAGHDVAFI   73 (77)
Q Consensus        43 Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~   73 (77)
                      +.|.+|..    .||..|.. -=|+||++..+
T Consensus        19 lfC~~d~~----~iC~~C~~~~~H~~H~~~~l   46 (48)
T 3ddt_A           19 IYCLTCEV----PTCSMCKVFGIHKACEVAPL   46 (48)
T ss_dssp             EEETTTTE----EECHHHHHHSTTTTSCEEEC
T ss_pred             EEcCCCCe----eEcccccCCCcCCCCcEEeC
Confidence            67988865    99999984 48999998764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=92.80  E-value=0.087  Score=29.13  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=26.1

Q ss_pred             eeceEEeecCCCCCCeeeehhhHH-hhcCCCceEEee
Q psy6684          39 MHDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFIR   74 (77)
Q Consensus        39 ~Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~r   74 (77)
                      ..--|.|.+|..    .||..|.. .=|+||++..+.
T Consensus        16 e~l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l~   48 (53)
T 2did_A           16 EALSLFCYEDQE----AVCLICAISHTHRAHTVVPLS   48 (53)
T ss_dssp             CBCCEEESSSCS----EECHHHHTSSTTTTSCEEECC
T ss_pred             CeeeEEeCCCCe----EEeccccCCCCCCCCcEeeHH
Confidence            344578998877    89999998 799999998754

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.68  E-value=0.033  Score=31.62  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=23.7

Q ss_pred             eEEeecCCCCCCeeeehhhHHh-hcCCCceEEe
Q psy6684          42 FYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFI   73 (77)
Q Consensus        42 ~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~   73 (77)
                      -|.|.+|..    .||..|... =|+||++..+
T Consensus        20 ~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l   48 (64)
T 2d8u_A           20 NIYCLTCEV----PTCSMCKVFGIHKACEVAPL   48 (64)
T ss_dssp             CSEESSSCC----CCCSHHHHSSSTTSSCEECT
T ss_pred             ceEcCcCCc----eeCccccCCCcCCCCCeeCH
Confidence            467999887    899999975 9999999764

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.34  E-value=0.1  Score=30.50  Aligned_cols=30  Identities=30%  Similarity=0.446  Sum_probs=25.4

Q ss_pred             eceEEeecCCCCCCeeeehhhHHhhcCCCceEEe
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI   73 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~   73 (77)
                      .--|.|.+|..    .||..|...=|+||++..+
T Consensus        27 ~l~lfC~~d~~----~iC~~C~~~~H~~H~~~~l   56 (72)
T 2csv_A           27 TMELFCQTDQT----CICYLCMFQEHKNHSTVTV   56 (72)
T ss_dssp             BCCEEESSSCC----EECHHHHHTTTSSSCEEEH
T ss_pred             ceEEEeCCCCe----EEccccCCCCCCCCCEecH
Confidence            34578999887    8999999999999998764

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=91.73  E-value=0.061  Score=32.00  Aligned_cols=29  Identities=28%  Similarity=0.413  Sum_probs=24.6

Q ss_pred             ceEEeecCCCCCCeeeehhhHH-hhcCCCceEEe
Q psy6684          41 DFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFI   73 (77)
Q Consensus        41 ~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~   73 (77)
                      --|.|.+|..    .||..|.. .=|+||++..+
T Consensus        29 l~lfC~~d~~----~iC~~C~~~~~H~~H~~~~l   58 (84)
T 2dja_A           29 VNMYCVSDDQ----LICALCKLVGRHRDHQVASL   58 (84)
T ss_dssp             CCEEETTTTE----EECHHHHHTSTTTTCCBCCC
T ss_pred             ccEEcCCCCc----eEcccCcCCCCCCCCCccCH
Confidence            4578998886    89999998 79999998764

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.48  E-value=0.21  Score=28.53  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=25.4

Q ss_pred             eceEEeecCCCCCCeeeehhhHH-hhcCCCceEEee
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFIR   74 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~r   74 (77)
                      .--+.|.++..    .||..|.. .=|+||++..+.
T Consensus        23 ~L~lfC~~d~~----~iC~~C~~s~eH~~H~~~~l~   54 (59)
T 2yrg_A           23 KLLLFCQEDGK----VICWLCERSQEHRGHHTFPTS   54 (59)
T ss_dssp             BCCEEETTTCS----EECHHHHTSTTTTTCCEEECC
T ss_pred             eeeeecCCCCc----EEecccCCCCcCCCCcEeeHH
Confidence            34577988776    89999998 799999998754

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.22  E-value=0.21  Score=28.39  Aligned_cols=29  Identities=31%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             eceEEeecCCCCCCeeeehhhHH-hhcCCCceEE
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAF   72 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y   72 (77)
                      .--|.|.+|..    .||..|.. .=|+||++..
T Consensus        27 ~L~lfC~~d~~----~iC~~C~~~~eH~~H~~~~   56 (57)
T 2egm_A           27 ALKLFCEVDEE----AICVVCRESRSHKQHSVVP   56 (57)
T ss_dssp             BCCEEETTTTE----EECHHHHHSHHHHSSCEEC
T ss_pred             eeeEEcCCCCc----EEecccCCCCCCCCCcEec
Confidence            34567887765    99999998 7999999863

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=85.49  E-value=0.32  Score=29.36  Aligned_cols=29  Identities=31%  Similarity=0.430  Sum_probs=23.9

Q ss_pred             ceEEeecCCCCCCeeeehhhHH-hhcCCCceEEe
Q psy6684          41 DFYRCQTCHTTDRNAICVNCIK-SCHAGHDVAFI   73 (77)
Q Consensus        41 ~~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~y~   73 (77)
                      --|.|.+|..    .||..|.. .=|+||++..+
T Consensus        70 l~~fC~~~~~----~iC~~C~~~~~H~~H~~~~l   99 (101)
T 2jun_A           70 VNMYCVTDDQ----LICALCKLVGRHRDHQVAAL   99 (101)
T ss_dssp             CCEEETTTTE----EECHHHHHHTTTSSSCBCCC
T ss_pred             ceEECCCCCC----ccchhcCCCCCcCCCCeecC
Confidence            4578998865    99999997 69999998754

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=85.40  E-value=0.11  Score=27.41  Aligned_cols=26  Identities=31%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             eEEeecCCCCCCeeeehhhHH-hhcCCCceE
Q psy6684          42 FYRCQTCHTTDRNAICVNCIK-SCHAGHDVA   71 (77)
Q Consensus        42 ~Y~C~TC~~~d~~giC~~Ca~-~CH~GHdv~   71 (77)
                      -+.|.++..    .||..|.. -=|+||++.
T Consensus        14 ~lfC~~d~~----~iC~~C~~~~~H~~H~~~   40 (42)
T 1fre_A           14 KLYCKDDGT----LSCVICRDSLKHASHNFL   40 (42)
T ss_dssp             CCCCCSSSS----SSCCTTSSCSSCTTCCCC
T ss_pred             eEEeCCCCe----EEeccCCCCCCCCCCcEe
Confidence            456777665    89999998 789999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	94.68
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	94.61
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	94.56
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	94.11
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	92.8
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	88.89

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0062  Score=32.93  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=23.6

Q ss_pred             ceEEeecCCCCCCeeeehhhHHh-hcCCCceEE
Q psy6684          41 DFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAF   72 (77)
Q Consensus        41 ~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y   72 (77)
                      --|.|.||..    .||..|+.. =|+||++.-
T Consensus        16 l~~yC~~C~~----~iC~~C~~~~~H~~H~~~~   44 (47)
T d2dq5a1          16 VNMYCVTDDQ----LICALCKLVGRHRDHQVAA   44 (47)
T ss_dssp             EEEEETTTTE----EEEHHHHHTSSTTSSCCCC
T ss_pred             ceEEcCCCCc----cCCccCcCcCCcCCCeEee
Confidence            4689999997    899999865 599999864

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.013  Score=32.72  Aligned_cols=30  Identities=30%  Similarity=0.446  Sum_probs=25.8

Q ss_pred             eceEEeecCCCCCCeeeehhhHHhhcCCCceEEe
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIKSCHAGHDVAFI   73 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~~CH~GHdv~y~   73 (77)
                      .--|.|.+|..    .||..|...=|+||++.-+
T Consensus        20 ~l~lyC~~c~~----~iC~~C~~~~H~~H~~~~l   49 (59)
T d2csva1          20 TMELFCQTDQT----CICYLCMFQEHKNHSTVTV   49 (59)
T ss_dssp             BCCEEESSSCC----EECHHHHHTTTSSSCEEEH
T ss_pred             ccceECCCCCc----eECcccCcccCCCCCeeCH
Confidence            34588999998    8999999989999999754

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.0056  Score=34.70  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=24.0

Q ss_pred             eEEeecCCCCCCeeeehhhHHhh-cCCCceEEee
Q psy6684          42 FYRCQTCHTTDRNAICVNCIKSC-HAGHDVAFIR   74 (77)
Q Consensus        42 ~Y~C~TC~~~d~~giC~~Ca~~C-H~GHdv~y~r   74 (77)
                      -|.|.||+.    .+|..|+..= |+||++..+.
T Consensus        23 ~~fC~~C~~----~iC~~C~~~~~Hk~H~~~~i~   52 (71)
T d2djaa1          23 NMYCVSDDQ----LICALCKLVGRHRDHQVASLN   52 (71)
T ss_dssp             CEEETTTTE----EECHHHHHTSTTTTCCBCCCC
T ss_pred             eeEcCCCCc----eeccccccCCCCCCCcCcCHH
Confidence            477999986    8999998764 9999987553

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.017  Score=30.36  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=25.2

Q ss_pred             ceeceEEeecCCCCCCeeeehhhHHh-hcCCCceEE
Q psy6684          38 PMHDFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAF   72 (77)
Q Consensus        38 ~~Q~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y   72 (77)
                      ...--|.|.+|+.    .||..|+.. =|+||+|.-
T Consensus         8 ~e~l~lfC~~d~~----~iC~~C~~~~~H~~H~v~p   39 (40)
T d2dida1           8 HEALSLFCYEDQE----AVCLICAISHTHRAHTVVP   39 (40)
T ss_dssp             CCBCCEEESSSCS----EECHHHHTSSTTTTSCEEE
T ss_pred             CccceEEcccCCc----EeeccCcCCCCcCCCcEec
Confidence            3455688999887    899999875 799999874

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.02  Score=31.15  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             eceEEeecCCCCCCeeeehhhHHh-hcCCCceEEe
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIKS-CHAGHDVAFI   73 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~~-CH~GHdv~y~   73 (77)
                      +--|.|.||..    .||..|+.. =|+||++.-+
T Consensus        11 ~l~~yC~~c~~----~iC~~C~~~~~Hk~H~v~~l   41 (51)
T d2d8ua1          11 KINIYCLTCEV----PTCSMCKVFGIHKACEVAPL   41 (51)
T ss_dssp             CCCSEESSSCC----CCCSHHHHSSSTTSSCEECT
T ss_pred             cceEEcCCCCc----eECccccCcCCcCcCcCcCH
Confidence            34688999987    899999753 5999999754

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=88.89  E-value=0.024  Score=29.71  Aligned_cols=28  Identities=32%  Similarity=0.450  Sum_probs=22.5

Q ss_pred             eceEEeecCCCCCCeeeehhhHHhh-cCCCceE
Q psy6684          40 HDFYRCQTCHTTDRNAICVNCIKSC-HAGHDVA   71 (77)
Q Consensus        40 Q~~Y~C~TC~~~d~~giC~~Ca~~C-H~GHdv~   71 (77)
                      +--+.|.+|+.    .||..|+..= |+||+|.
T Consensus         9 ~l~lfC~~d~~----~iC~~C~~~~~H~~H~v~   37 (39)
T d1frea_           9 RLKLYCKDDGT----LSCVICRDSLKHASHNFL   37 (39)
T ss_dssp             SCCCCCCSSSS----SSCCTTSSCSSCTTCCCC
T ss_pred             ceeEEcccCCc----EeeccCcCCCCcCCCcEe
Confidence            44577888887    8999998764 9999985