Psyllid ID: psy6709

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR
ccccEEEEEEccEEEEEccccccccEEEEEEccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccHHHHHHHHHHcccccEEEEccccccccccc
cccEEEEEEEccEEEEEEcccccccEEEEEEccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccHHHHHHHcHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEcccHHHHHccHHHHHHHHHHHHHcccEEEEEEccccccccccc
MKSLQSIIYEKHSLKILDQlllphtsklvdiNNVEDAYQAIKSMQVRGAPAIAIVGCLGLvvdikdkqfpdNELIQLIESMLEkdisdnkaigrNGAQalidlnprvsklnvlthcntgslataeYGTALGVIRSLHgankivdikdkqfpdndsleKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSewakaspvntvKTRLIQLIESMLEkdisdnkaigrngaqalidlnpgvsklnvlthcntgslataeYGTALGVIRSLHGAnkigaayctetrpynqgar
MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKivdikdkqfpdnDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSslsewakaspvntvkTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIgaayctetrpynqgar
MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR
******IIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVS*****************************TVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTE*********
*KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQG**
MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVN****************KASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR
*KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQ***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query288 2.2.26 [Sep-21-2011]
Q16I17 360 Methylthioribose-1-phosph N/A N/A 0.506 0.405 0.540 2e-37
Q7PKS9 351 Methylthioribose-1-phosph yes N/A 0.5 0.410 0.56 4e-37
B4NG41 365 Methylthioribose-1-phosph N/A N/A 0.506 0.4 0.535 5e-37
B4JRX2 363 Methylthioribose-1-phosph N/A N/A 0.506 0.402 0.529 8e-36
B4K8A4 362 Methylthioribose-1-phosph N/A N/A 0.506 0.403 0.532 2e-35
Q9V9X4 364 Methylthioribose-1-phosph yes N/A 0.496 0.392 0.528 4e-35
B4QSM8 364 Methylthioribose-1-phosph N/A N/A 0.506 0.401 0.525 4e-35
B4I029 364 Methylthioribose-1-phosph N/A N/A 0.506 0.401 0.525 1e-34
Q0CFY3 377 Methylthioribose-1-phosph N/A N/A 0.493 0.376 0.537 2e-34
B4LWZ8 362 Methylthioribose-1-phosph N/A N/A 0.506 0.403 0.512 3e-34
>sp|Q16I17|MTNA_AEDAE Methylthioribose-1-phosphate isomerase OS=Aedes aegypti GN=AAEL013828 PE=3 SV=1 Back     alignment and function desciption
 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 80/148 (54%), Positives = 105/148 (70%), Gaps = 2/148 (1%)

Query: 143 VDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAK--ASPVNTV 200
           V+I  ++F    + ++ V  KL+YLVSARPTAVNMK AA+ + S  +  A+  +  V+T+
Sbjct: 61  VEIFGEKFDTKQTFKQEVEGKLNYLVSARPTAVNMKLAAEDLISLANALAQDESISVDTM 120

Query: 201 KTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTAL 260
           K R ++ IE ML+KDI+DN AIG+NGA  ++   P    + +LTHCNTGSLATA YGTAL
Sbjct: 121 KERFLKAIEDMLDKDIADNMAIGKNGADIILSHIPNGGSVRILTHCNTGSLATAGYGTAL 180

Query: 261 GVIRSLHGANKIGAAYCTETRPYNQGAR 288
           GVIR LH  N++   YCTETRPYNQGAR
Sbjct: 181 GVIRKLHEMNRLEHVYCTETRPYNQGAR 208
Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
Aedes aegypti (taxid: 7159)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 3
>sp|Q7PKS9|MTNA_ANOGA Methylthioribose-1-phosphate isomerase OS=Anopheles gambiae GN=AGAP001589 PE=3 SV=1 Back     alignment and function description
>sp|B4NG41|MTNA_DROWI Methylthioribose-1-phosphate isomerase OS=Drosophila willistoni GN=GK22419 PE=3 SV=1 Back     alignment and function description
>sp|B4JRX2|MTNA_DROGR Methylthioribose-1-phosphate isomerase OS=Drosophila grimshawi GN=GH21593 PE=3 SV=1 Back     alignment and function description
>sp|B4K8A4|MTNA_DROMO Methylthioribose-1-phosphate isomerase OS=Drosophila mojavensis GN=GI10562 PE=3 SV=1 Back     alignment and function description
>sp|Q9V9X4|MTNA_DROME Methylthioribose-1-phosphate isomerase OS=Drosophila melanogaster GN=CG11334 PE=2 SV=1 Back     alignment and function description
>sp|B4QSM8|MTNA_DROSI Methylthioribose-1-phosphate isomerase OS=Drosophila simulans GN=GD16414 PE=3 SV=1 Back     alignment and function description
>sp|B4I029|MTNA_DROSE Methylthioribose-1-phosphate isomerase OS=Drosophila sechellia GN=GM12085 PE=3 SV=1 Back     alignment and function description
>sp|Q0CFY3|MTNA_ASPTN Methylthioribose-1-phosphate isomerase OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mri1 PE=3 SV=1 Back     alignment and function description
>sp|B4LWZ8|MTNA_DROVI Methylthioribose-1-phosphate isomerase OS=Drosophila virilis GN=GJ22917 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
340718292355 PREDICTED: methylthioribose-1-phosphate 0.503 0.408 0.578 2e-37
380028132355 PREDICTED: methylthioribose-1-phosphate 0.503 0.408 0.578 3e-37
350401743355 PREDICTED: methylthioribose-1-phosphate 0.503 0.408 0.571 3e-37
156553460350 PREDICTED: methylthioribose-1-phosphate 0.5 0.411 0.570 5e-37
383850068355 PREDICTED: methylthioribose-1-phosphate 0.503 0.408 0.557 7e-37
48096956355 PREDICTED: methylthioribose-1-phosphate 0.503 0.408 0.564 2e-36
157137579360 translation initiation factor eif-2b [Ae 0.506 0.405 0.540 1e-35
170059628328 translation initiation factor eif-2b [Cu 0.506 0.445 0.533 1e-35
31242175351 AGAP001589-PA [Anopheles gambiae str. PE 0.5 0.410 0.56 2e-35
195449892365 GK22419 [Drosophila willistoni] gi|31347 0.506 0.4 0.535 3e-35
>gi|340718292|ref|XP_003397603.1| PREDICTED: methylthioribose-1-phosphate isomerase-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/147 (57%), Positives = 107/147 (72%), Gaps = 2/147 (1%)

Query: 144 DIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTV--K 201
           +I+++++ D  SL + V  KL+YLVSARPTAVNMK AAD +    ++ +K   VN +  K
Sbjct: 62  EIRNEEYMDKKSLRRDVEGKLNYLVSARPTAVNMKIAADELIQLANKLSKDETVNVIEMK 121

Query: 202 TRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLNVLTHCNTGSLATAEYGTALG 261
            R I  IE+MLEKDI+DNKAIG  GAQ ++    G + + +LTHCNTGSLATA YGTALG
Sbjct: 122 ERFIAAIEAMLEKDIADNKAIGDYGAQEILKNVSGDNFVRILTHCNTGSLATAGYGTALG 181

Query: 262 VIRSLHGANKIGAAYCTETRPYNQGAR 288
           VIRSLH  N +  AYC+ETRPYNQGAR
Sbjct: 182 VIRSLHKRNSLEHAYCSETRPYNQGAR 208

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380028132|ref|XP_003697763.1| PREDICTED: methylthioribose-1-phosphate isomerase-like [Apis florea] Back     alignment and taxonomy information
>gi|350401743|ref|XP_003486247.1| PREDICTED: methylthioribose-1-phosphate isomerase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|156553460|ref|XP_001604505.1| PREDICTED: methylthioribose-1-phosphate isomerase-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383850068|ref|XP_003700639.1| PREDICTED: methylthioribose-1-phosphate isomerase-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|48096956|ref|XP_392553.1| PREDICTED: methylthioribose-1-phosphate isomerase-like [Apis mellifera] Back     alignment and taxonomy information
>gi|157137579|ref|XP_001664017.1| translation initiation factor eif-2b [Aedes aegypti] gi|122093211|sp|Q16I17.1|MTNA_AEDAE RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|108869682|gb|EAT33907.1| AAEL013828-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170059628|ref|XP_001865446.1| translation initiation factor eif-2b [Culex quinquefasciatus] gi|167878335|gb|EDS41718.1| translation initiation factor eif-2b [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|31242175|ref|XP_321518.1| AGAP001589-PA [Anopheles gambiae str. PEST] gi|74799227|sp|Q7PKS9.1|MTNA_ANOGA RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|30173764|gb|EAA43149.1| AGAP001589-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|195449892|ref|XP_002072272.1| GK22419 [Drosophila willistoni] gi|313471317|sp|B4NG41.1|MTNA_DROWI RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|194168357|gb|EDW83258.1| GK22419 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query288
UNIPROTKB|E2R7C2 368 MRI1 "Methylthioribose-1-phosp 0.479 0.375 0.524 3.7e-48
UNIPROTKB|J9P6Q4 358 MRI1 "Methylthioribose-1-phosp 0.479 0.385 0.524 3.7e-48
UNIPROTKB|F1SD78 358 MRI1 "Methylthioribose-1-phosp 0.479 0.385 0.531 6e-48
UNIPROTKB|Q9BV20 369 MRI1 "Methylthioribose-1-phosp 0.479 0.373 0.524 9.8e-48
ZFIN|ZDB-GENE-080204-109 353 mri1 "methylthioribose-1-phosp 0.465 0.379 0.511 1.4e-46
UNIPROTKB|Q2NL31 358 MRI1 "Methylthioribose-1-phosp 0.479 0.385 0.510 3.7e-46
RGD|1307789 369 Mri1 "methylthioribose-1-phosp 0.479 0.373 0.524 7.6e-46
MGI|MGI:1915123 369 Mri1 "methylthioribose-1-phosp 0.479 0.373 0.524 7.6e-46
ASPGD|ASPL0000073543 379 AN4290 [Emericella nidulans (t 0.552 0.419 0.461 5.9e-44
UNIPROTKB|Q5B590 379 mri1 "Methylthioribose-1-phosp 0.552 0.419 0.461 5.9e-44
UNIPROTKB|E2R7C2 MRI1 "Methylthioribose-1-phosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
 Score = 347 (127.2 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 74/141 (52%), Positives = 98/141 (69%)

Query:   151 PDNDSLEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAK--ASPVNTVKTRLIQLI 208
             P   +L  +V + L +LV+ARPTAVNM RAA  +  + +  A+   +    V+ R+I+  
Sbjct:    70 PGPAALVAFVRDALSFLVTARPTAVNMARAARHLADAAALEAERDGATEEAVRERVIRCA 129

Query:   209 ESMLEKDISDNKAIGRNGAQALID-LNPGVSKLNVLTHCNTGSLATAEYGTALGVIRSLH 267
             E MLEKD+ DN++IG  GA+ L++   PG  K+ VLTHCNTG+LATA YGTALGVIRSLH
Sbjct:   130 EDMLEKDLKDNRSIGDLGARHLLERAAPGGGKVTVLTHCNTGALATAGYGTALGVIRSLH 189

Query:   268 GANKIGAAYCTETRPYNQGAR 288
                ++  A+CTETRPYNQGAR
Sbjct:   190 TLGRLDHAFCTETRPYNQGAR 210
GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0042802 "identical protein binding" evidence=IEA
GO:0019284 "L-methionine biosynthetic process from S-adenosylmethionine" evidence=IEA
GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IEA
UNIPROTKB|J9P6Q4 MRI1 "Methylthioribose-1-phosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD78 MRI1 "Methylthioribose-1-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BV20 MRI1 "Methylthioribose-1-phosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-109 mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NL31 MRI1 "Methylthioribose-1-phosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1307789 Mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1915123 Mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ASPGD|ASPL0000073543 AN4290 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5B590 mri1 "Methylthioribose-1-phosphate isomerase" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0ITU1MTNA_ORYSJ5, ., 3, ., 1, ., 2, 30.52670.45130.3475yesN/A
Q7PKS9MTNA_ANOGA5, ., 3, ., 1, ., 2, 30.560.50.4102yesN/A
Q2UIM3MTNA_ASPOR5, ., 3, ., 1, ., 2, 30.51470.45830.3464yesN/A
Q9V9X4MTNA_DROME5, ., 3, ., 1, ., 2, 30.52830.49650.3928yesN/A
Q4WNI1MTNA_ASPFU5, ., 3, ., 1, ., 2, 30.50670.50.3720yesN/A
Q5HZE4MTNA_RAT5, ., 3, ., 1, ., 2, 30.54130.45130.3523yesN/A
B6H5R4MTNA_PENCW5, ., 3, ., 1, ., 2, 30.51030.49300.3717yesN/A
Q9CQT1MTNA_MOUSE5, ., 3, ., 1, ., 2, 30.54130.45130.3523yesN/A
B9HCR2MTNA_POPTR5, ., 3, ., 1, ., 2, 30.54960.45130.3385yesN/A
Q29BB3MTNA_DROPS5, ., 3, ., 1, ., 2, 30.51940.50690.4033yesN/A
Q9BV20MTNA_HUMAN5, ., 3, ., 1, ., 2, 30.54130.45130.3523yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1LOW CONFIDENCE prediction!
3rd Layer5.3.1.23LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
TIGR00512 331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 3e-51
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 3e-47
COG0182 346 COG0182, COG0182, Predicted translation initiation 3e-40
COG0182346 COG0182, COG0182, Predicted translation initiation 6e-38
TIGR00524 303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 1e-32
PRK05720 344 PRK05720, mtnA, methylthioribose-1-phosphate isome 3e-32
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 2e-28
PRK06036 339 PRK06036, PRK06036, translation initiation factor 5e-24
pfam01008 281 pfam01008, IF-2B, Initiation factor 2 subunit fami 3e-23
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 9e-21
PRK06036339 PRK06036, PRK06036, translation initiation factor 1e-20
PRK08334 356 PRK08334, PRK08334, translation initiation factor 4e-17
PRK06371329 PRK06371, PRK06371, translation initiation factor 5e-17
PRK08334356 PRK08334, PRK08334, translation initiation factor 9e-17
PRK05772363 PRK05772, PRK05772, translation initiation factor 4e-13
PRK05772 363 PRK05772, PRK05772, translation initiation factor 1e-09
PRK06371 329 PRK06371, PRK06371, translation initiation factor 4e-09
PRK08535 310 PRK08535, PRK08535, translation initiation factor 9e-09
TIGR00511 301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 7e-07
COG1184 301 COG1184, GCD2, Translation initiation factor 2B su 1e-05
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 2e-05
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information 
 Score =  170 bits (434), Expect = 3e-51
 Identities = 73/168 (43%), Positives = 95/168 (56%), Gaps = 22/168 (13%)

Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
             A YG AL                 ++  + +  +  + EKL YLVS+RPTAVN+  A 
Sbjct: 50  IVAAYGLALAA---------------READEREEFKALLEEKLQYLVSSRPTAVNLSWAL 94

Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVS-KL 240
           D ++++L     A  V  +K  L+   E +LE+D+ DN+AIG NGA  +     GV+  L
Sbjct: 95  DRMRAALE---AAKTVADIKEALLAEAERILEEDLEDNRAIGENGAALIK---KGVAAPL 148

Query: 241 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
            VLTHCNTGSLATA YGTALGVIRS H   ++   Y  ETRP  QGAR
Sbjct: 149 RVLTHCNTGSLATAGYGTALGVIRSAHEKGRLEHVYADETRPRLQGAR 196

The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA [Amino acid biosynthesis, Aspartate family]. Length = 331
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 288
COG0182 346 Predicted translation initiation factor 2B subunit 100.0
KOG1468|consensus 354 100.0
PRK08334 356 translation initiation factor IF-2B subunit beta; 100.0
PRK05772 363 translation initiation factor IF-2B subunit alpha; 100.0
PRK06036 339 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00512 331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
PRK05720 344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
PRK06371 329 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00524 303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PRK08335 275 translation initiation factor IF-2B subunit alpha; 100.0
COG0182346 Predicted translation initiation factor 2B subunit 99.96
TIGR00511 301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 99.96
PRK08535 310 translation initiation factor IF-2B subunit delta; 99.96
KOG1468|consensus354 99.95
PRK08334356 translation initiation factor IF-2B subunit beta; 99.88
PRK06036339 translation initiation factor IF-2B subunit alpha; 99.86
PRK05772363 translation initiation factor IF-2B subunit alpha; 99.85
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 99.84
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 99.83
PRK06371329 translation initiation factor IF-2B subunit alpha; 99.82
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 99.75
PF01008 282 IF-2B: Initiation factor 2 subunit family; InterPr 99.73
COG1184 301 GCD2 Translation initiation factor 2B subunit, eIF 99.67
PRK08335275 translation initiation factor IF-2B subunit alpha; 99.61
PRK08535310 translation initiation factor IF-2B subunit delta; 99.45
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 99.44
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 98.97
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 98.81
KOG1466|consensus 313 98.44
KOG1466|consensus313 97.55
PRK06372253 translation initiation factor IF-2B subunit delta; 97.43
PRK06372 253 translation initiation factor IF-2B subunit delta; 97.17
KOG1465|consensus 353 96.9
KOG1467|consensus 556 94.88
KOG1467|consensus556 91.23
KOG1465|consensus353 82.55
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-65  Score=479.03  Aligned_cols=198  Identities=42%  Similarity=0.599  Sum_probs=185.1

Q ss_pred             CcceeEEEeCC-cEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q psy6709           2 KSLQSIIYEKH-SLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIES   80 (288)
Q Consensus         2 ~~~~~i~~~~~-~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~   80 (288)
                      +++++|+|+++ +|++||||+||++++|++|++++|+++|||+|+||||||||++|||||++++.+.+.           
T Consensus         1 ~~~~~i~w~~~~~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~~-----------   69 (346)
T COG0182           1 MKLRPIEWKDDGSVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESKN-----------   69 (346)
T ss_pred             CCceeEEEcCCCeEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhccc-----------
Confidence            46899999988 799999999999999999999999999999999999999999999999999887651           


Q ss_pred             HHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHH
Q psy6709          81 MLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYV  160 (288)
Q Consensus        81 ~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l  160 (288)
                                                                                           ..+.+++..++
T Consensus        70 ---------------------------------------------------------------------~~~~~e~~~~l   80 (346)
T COG0182          70 ---------------------------------------------------------------------DSKGEEFIEAL   80 (346)
T ss_pred             ---------------------------------------------------------------------ccchHHHHHHH
Confidence                                                                                 12346788999


Q ss_pred             HHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCC
Q psy6709         161 GEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKL  240 (288)
Q Consensus       161 ~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~  240 (288)
                      .++...|.++||||+||+|+++||...+.+.   .++++.++.++++|.+|.+||++.|++||.+|+++|.+      +.
T Consensus        81 e~a~~~l~~tRPTAvNLfwal~rm~~~~~~~---~~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~~------~~  151 (346)
T COG0182          81 EKAAETLKSTRPTAVNLFWALDRMLNAAKEA---IEVKEPKESILQEAEEIAEEDLEANRAIGENGAELLPD------GD  151 (346)
T ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHHHHhhc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CC
Confidence            9999999999999999999999999988765   45899999999999999999999999999999999976      56


Q ss_pred             ceeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709         241 NVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR  288 (288)
Q Consensus       241 ~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR  288 (288)
                      .||||||+|+|||+||||||||||++|++||.++|||+||||||||||
T Consensus       152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGAR  199 (346)
T COG0182         152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGAR  199 (346)
T ss_pred             eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccce
Confidence            899999999999999999999999999999999999999999999998

>KOG1468|consensus Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>KOG1468|consensus Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>KOG1466|consensus Back     alignment and domain information
>KOG1466|consensus Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>KOG1465|consensus Back     alignment and domain information
>KOG1467|consensus Back     alignment and domain information
>KOG1467|consensus Back     alignment and domain information
>KOG1465|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
1w2w_A211 Crystal Structure Of Yeast Ypr118w, A Methylthiorib 6e-21
1w2w_A211 Crystal Structure Of Yeast Ypr118w, A Methylthiorib 2e-15
1t5o_A 351 Crystal Structure Of The Translation Initiation Fac 9e-20
2a0u_A 383 Crystal Structure Of The Eukaryotic Initiation Fact 6e-19
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 1e-17
1t9k_A 347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 3e-17
2yrf_A 374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 9e-09
>pdb|1W2W|A Chain A, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1- Phosphate Isomerase Related To Regulatory Eif2b Subunits Length = 211 Back     alignment and structure 
Iteration: 1

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/200 (36%), Positives = 102/200 (51%), Gaps = 66/200 (33%)
Query: 3   SLQSIIYEKH-----SLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGC 57
           SL++I++++      S+K+LDQLLLP+T+K V I+ ++D Y  IKS QVRGAPAIAIVG 
Sbjct: 2   SLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSXQVRGAPAIAIVGS 61
Query: 58  LGLVVDIK-DKQFPDNEL------------------------------IQLIESMLE--- 83
           L ++ +++  K  P +++                              + L  S++E   
Sbjct: 62  LSVLTEVQLIKHNPTSDVATLYSLVNWESTKTVLNKRLDFLLSSRPTAVNLSNSLVEIKN 121
Query: 84  --KDISDNKAI----------------------GRNGAQALIDL---NPRVSKLNVLTHC 116
             K  SD KA                       G NGA+ LID+   +    +  VLT C
Sbjct: 122 ILKSSSDLKAFDGSLYNYVCELIDEDLANNXKXGDNGAKYLIDVLQKDGFKDEFAVLTIC 181
Query: 117 NTGSLATAEYGTALGVIRSL 136
           NTGSLAT+ YGTALGVIRSL
Sbjct: 182 NTGSLATSGYGTALGVIRSL 201
>pdb|1W2W|A Chain A, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1- Phosphate Isomerase Related To Regulatory Eif2b Subunits Length = 211 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b From Leishmania Major At 2.1 A Resolution Length = 383 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query288
2a0u_A 383 Initiation factor 2B; SGPP, structural genomics, P 5e-55
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 1e-49
1t5o_A 351 EIF2BD, translation initiation factor EIF2B, subun 4e-49
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 5e-46
2yvk_A 374 Methylthioribose-1-phosphate isomerase; methionine 7e-48
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 2e-47
1t9k_A 347 Probable methylthioribose-1-phosphate isomerase; s 2e-47
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 1e-46
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 3e-45
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 8e-28
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 6e-24
3a11_A 338 Translation initiation factor EIF-2B, delta subun; 2e-36
3a11_A338 Translation initiation factor EIF-2B, delta subun; 2e-25
1vb5_A 276 Translation initiation factor EIF-2B; 2.20A {Pyroc 7e-33
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 1e-23
3ecs_A 315 Translation initiation factor EIF-2B subunit alpha 3e-22
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
1w2w_B 191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 3e-04
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
 Score =  181 bits (462), Expect = 5e-55
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 11/169 (6%)

Query: 122 ATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVGEKLDYLVSARPTAVNMKRAA 181
            +A  G A+   R            + +      ++ ++    D+++++RPTAVN+    
Sbjct: 68  VSAALGIAVATQR---------KAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCL 118

Query: 182 DSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSK-- 239
             +K+ + +         V    ++L E++   D++ N+ I R+GA  ++       +  
Sbjct: 119 RDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDK 178

Query: 240 LNVLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR 288
           +++LT CNTG+LAT+ YGTALGV+R L    K+   Y  ETRP+NQGAR
Sbjct: 179 VSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGAR 227
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 211 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 211 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 211 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
2yvk_A 374 Methylthioribose-1-phosphate isomerase; methionine 100.0
2a0u_A 383 Initiation factor 2B; SGPP, structural genomics, P 100.0
1t5o_A 351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1t9k_A 347 Probable methylthioribose-1-phosphate isomerase; s 100.0
3a11_A 338 Translation initiation factor EIF-2B, delta subun; 100.0
1vb5_A 276 Translation initiation factor EIF-2B; 2.20A {Pyroc 99.96
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 99.85
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 99.85
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 99.84
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 99.84
3ecs_A 315 Translation initiation factor EIF-2B subunit alpha 99.78
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.66
3a11_A338 Translation initiation factor EIF-2B, delta subun; 99.63
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 99.5
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 99.31
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 96.41
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
Probab=100.00  E-value=4.2e-55  Score=392.07  Aligned_cols=199  Identities=43%  Similarity=0.647  Sum_probs=168.0

Q ss_pred             CcceeEEE---e-C-CcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCC-CCcHHHH
Q psy6709           2 KSLQSIIY---E-K-HSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQ-FPDNELI   75 (288)
Q Consensus         2 ~~~~~i~~---~-~-~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~-~~~~~~~   75 (288)
                      |++++|.|   + + ++|.||||++||++++|++|++++|+++|||+|+|||||+||++|||||++++++.+ ..     
T Consensus         1 m~l~~~~~~~~~~~~~~l~iLDQ~~LP~e~~~~~~~~~~~v~~AIk~M~VRGAPaIgiaAA~glal~a~~~~~~~-----   75 (211)
T 1w2w_A            1 MSLEAIVFDRSEPENVSVKVLDQLLLPYTTKYVPIHTIDDGYSVIKSMQVRGAPAIAIVGSLSVLTEVQLIKHNP-----   75 (211)
T ss_dssp             CTTCSEEEECSSTTSCEEEEECTTTTTTCCCEEECCSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHHCT-----
T ss_pred             CCcCCeeeeeecCCCCEEEEEecCCCCCcEEEEEeCCHHHHHHHHHCCcccCchHHHHHHHHHHHHHHHhccccC-----
Confidence            67999999   4 4 389999999999999999999999999999999999999999999999999977531 00     


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchH
Q psy6709          76 QLIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDS  155 (288)
Q Consensus        76 ~~a~~~~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~  155 (288)
                                                       +....|..                                +..+..+
T Consensus        76 ---------------------------------~~~~~~~~--------------------------------~~~~~~~   90 (211)
T 1w2w_A           76 ---------------------------------TSDVATLY--------------------------------SLVNWES   90 (211)
T ss_dssp             ---------------------------------TSTGGGGS--------------------------------CTTCHHH
T ss_pred             ---------------------------------Chhhcccc--------------------------------cccchHH
Confidence                                             00000100                                1234557


Q ss_pred             HHHHHHHHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhC-
Q psy6709         156 LEKYVGEKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLN-  234 (288)
Q Consensus       156 ~~~~l~EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~-  234 (288)
                      |..++.+...+|..+|||||||+|++++|+..+.+.   .+.+++.+.++++|+.|+++|++.|++||+||+++|.+.. 
T Consensus        91 ~~~~l~~~~~~L~~sRPTAVNL~~Al~r~~~~~~~~---~~~~~~~~~l~~~a~~i~~ed~~~n~~IG~~Ga~lI~~~~~  167 (211)
T 1w2w_A           91 TKTVLNKRLDFLLSSRPTAVNLSNSLVEIKNILKSS---SDLKAFDGSLYNYVCELIDEDLANNMKMGDNGAKYLIDVLQ  167 (211)
T ss_dssp             HHHHHHHHHHHHHTSCCSCSHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            889999999999999999999999999999877543   5778889999999999999999999999999999994321 


Q ss_pred             -C-CCCCCceeecCCCCcccccccccHHHHHHHHHHCCCcc
Q psy6709         235 -P-GVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIG  273 (288)
Q Consensus       235 -~-~~~~~~vlThcntg~lAt~~~gtalgvi~~~~~~~~~~  273 (288)
                       + ..++++||||||||||||+||||||||||++|++||.+
T Consensus       168 ~~~~~dg~~ILTHCNtG~LAT~g~GTALgvIr~a~~~Gk~~  208 (211)
T 1w2w_A          168 KDGFKDEFAVLTICNTGSLATSGYGTALGVIRSLWKDSLAK  208 (211)
T ss_dssp             HTTCCSEEEEEECSCCSGGGSSSSCSHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCeEEeECCCchHhhcCcchHHHHHHHHHHcCCcc
Confidence             1 11468999999999999999999999999999999865
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 288
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 3e-27
d1t5oa_ 340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 2e-12
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 2e-26
d1t9ka_ 340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 7e-12
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 1e-23
d2a0ua1 374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 1e-17
g1w2w.1 402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 8e-21
g1w2w.1 402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 7e-20
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 2e-07
d1vb5a_ 274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 9e-14
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 4e-12
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B delta-subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  106 bits (264), Expect = 3e-27
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 53/186 (28%)

Query: 3   SLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVV 62
           SL+SI ++   LK++DQ  LP   ++++  NVE+   AIK + VRGAPA+   G  G+ +
Sbjct: 1   SLRSIFWDDG-LKLIDQTKLPEKLEVIECRNVEELADAIKKLAVRGAPALEAAGAYGIAL 59

Query: 63  DIKDKQFPDNELIQ---------------------------------------------- 76
             ++++F D + ++                                              
Sbjct: 60  AAREREFADVDELKEHLKKAADFLASTRPTAVNLFVGIERALNAALKGESVEEVKELALR 119

Query: 77  LIESMLEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSL 136
             E + E+D+  N+ +G  GA+ L D         VLT+CN G LAT ++GTALGV+RS 
Sbjct: 120 EAEKLAEEDVERNRKMGEYGAELLED------GDVVLTYCNAGRLATVDWGTALGVVRSA 173

Query: 137 HGANKI 142
               K 
Sbjct: 174 VEQGKE 179
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query288
d1t9ka_ 340 Probable methylthioribose-1-phosphate isomerase TM 100.0
d1t5oa_ 340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d2a0ua1 374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
g1w2w.1 402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1vb5a_ 274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 99.96
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 99.84
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 99.81
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 99.8
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 99.78
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 99.41
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Probable methylthioribose-1-phosphate isomerase TM0911
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=8.3e-59  Score=436.22  Aligned_cols=194  Identities=40%  Similarity=0.562  Sum_probs=179.3

Q ss_pred             CcceeEEEeCCcEEEeeccCCCCceeEEEcCCHHHHHHHHHhchhcCChhHHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Q psy6709           2 KSLQSIIYEKHSLKILDQLLLPHTSKLVDINNVEDAYQAIKSMQVRGAPAIAIVGCLGLVVDIKDKQFPDNELIQLIESM   81 (288)
Q Consensus         2 ~~~~~i~~~~~~l~ilDQ~~lP~~~~~~~~~~~~dv~~AIk~M~VRGAPaIgiaaA~glal~~~~~~~~~~~~~~~a~~~   81 (288)
                      |.+++|+|++++|+||||++||++++|++|+|++|+++|||+|+|||||+||++|||||++++++.+.            
T Consensus         1 ~~~~ti~w~~~~v~iLDQ~~LP~~~~~i~~~~~~~v~~AI~~M~VRGAPaIGvaaA~glala~~~~~~------------   68 (340)
T d1t9ka_           1 LKTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYKT------------   68 (340)
T ss_dssp             CBCSSEEECSSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTCCS------------
T ss_pred             CcceEEEEECCEEEEEECCCCCCeEEEEEeCCHHHHHHHhHhCccCCchHHHHHHHHHHHHHHHhccc------------
Confidence            46789999999999999999999999999999999999999999999999999999999999887541            


Q ss_pred             HHHHHHHHHHHHHHHHHhchhcCCCCCCCccccccCCCcchhhhcchhHHHHHHhhhcCcccccccCCCCCchHHHHHHH
Q psy6709          82 LEKDISDNKAIGRNGAQALIDLNPRVSKLNVLTHCNTGSLATAEYGTALGVIRSLHGANKIVDIKDKQFPDNDSLEKYVG  161 (288)
Q Consensus        82 ~~~~~~~~~~ig~~ga~~i~d~~~~~~~~~vlThCnt~~~at~~~gtal~~i~~~~~~~~~v~~~~~~~~~~~~~~~~l~  161 (288)
                                                                                              +++..++.
T Consensus        69 ------------------------------------------------------------------------~~~~e~l~   76 (340)
T d1t9ka_          69 ------------------------------------------------------------------------GSLTDWMK   76 (340)
T ss_dssp             ------------------------------------------------------------------------SCHHHHHH
T ss_pred             ------------------------------------------------------------------------CchHHHHH
Confidence                                                                                    12356899


Q ss_pred             HHHHhHhhCCCcHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCc
Q psy6709         162 EKLDYLVSARPTAVNMKRAADSVKSSLSEWAKASPVNTVKTRLIQLIESMLEKDISDNKAIGRNGAQALIDLNPGVSKLN  241 (288)
Q Consensus       162 EtrpyLqgARPTAvnL~~A~~~v~~~~~~~~~~~~~~~~~~~l~~~A~~i~~ed~~~n~kIG~~ga~~l~~~~~~~~~~~  241 (288)
                      +...+|..+||||+||+|+.++|...+.+.   .+.+++.+.++.+|+.+.++|.+.|++||++|+++|.+      +.+
T Consensus        77 ~~~~~L~saRPTAVNL~wAv~r~~~~l~~~---~~~e~~~~~l~~~a~~i~~ed~~~~~~Ig~~g~~lI~~------g~~  147 (340)
T d1t9ka_          77 QVKETLARTRPTAVNLFWALNRMEKVFFEN---ADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIKD------GST  147 (340)
T ss_dssp             HHHHHHHTSCSSCTHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT------TEE
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhhcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCE
Confidence            999999999999999999999999887665   45567788999999999999999999999999999865      689


Q ss_pred             eeecCCCCcccccccccHHHHHHHHHHCCCcceEEeCCCCCCccCCC
Q psy6709         242 VLTHCNTGSLATAEYGTALGVIRSLHGANKIGAAYCTETRPYNQGAR  288 (288)
Q Consensus       242 vlThcntg~lAt~~~gtalgvi~~~~~~~~~~~~~~~ETrP~~QGaR  288 (288)
                      ||||||+|+|||+|||||||+|+.+|++||.++|||+|||||+||+|
T Consensus       148 ILThcnsg~lAt~~~gta~~~~~~a~~~g~~~~v~v~EsrP~~qG~~  194 (340)
T d1t9ka_         148 ILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGAR  194 (340)
T ss_dssp             EEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHH
T ss_pred             EEEecCCccceeeechhhhhHHHHHhhcCceEEEEEecCCCCCccHH
Confidence            99999999999999999999999999999999999999999999975
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure