Psyllid ID: psy6804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK
Secondary Structure (PSIPRED)
ccEEEccccccccccEEEEcccccHHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEccccccccccccccccccccccccEEEHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccEEEEEEcccHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHcccEEEEEcccHHHHccccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEcccccccccccccccccccccEEEEEHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHcccEEEEEcccccccc
Coil and Loop (DISEMBL)
mnailnknsadtkrcklytslfpcneCAKVIIQSGIKEVIYMCDkhkqkpatIASKRMFDAAKVHYWSEmdkmngvqngsphkrvddVLEWHEYFMASAFLVAkrskdpvtrVGAVIvnednkivgtgyngmpigcsddefpwdknthdELDMCHAEMNAILNknsadtkrcklytslfpcneCAKVIIQSGIKEVIYMCDKQMSYK
Flexible Loop (DISEMBL)
mnailnknsadtkrCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLvakrskdpVTRVGavivnednkivgtgynGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK
Low Complexity Region (SEG)
MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK
Disordered region (IsUnstruct)
************KRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDK**********KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD******
Disordered Region (DISOPRED)
MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ****
Disordered Region (DISEMBL)
MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK
Disordered Region (DISPRO)
MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q5M9G0	178	Deoxycytidylate deaminase	yes	N/A	0.579	0.674	0.664	2e-44
Q8K2D6	178	Deoxycytidylate deaminase	yes	N/A	0.579	0.674	0.664	2e-44
Q5RC69	178	Deoxycytidylate deaminase	yes	N/A	0.579	0.674	0.656	4e-44
P32321	178	Deoxycytidylate deaminase	yes	N/A	0.579	0.674	0.656	1e-43
Q9VWA2	203	Probable deoxycytidylate	yes	N/A	0.579	0.591	0.549	2e-34
P30648	197	Probable deoxycytidylate	yes	N/A	0.676	0.710	0.433	2e-26
P33968	147	Uncharacterized deaminase	yes	N/A	0.512	0.721	0.431	4e-14
P32393	189	ComE operon protein 2 OS=	yes	N/A	0.526	0.576	0.403	2e-13
O43012	322	Deoxycytidylate deaminase	yes	N/A	0.652	0.419	0.355	3e-12
O22000	128	Deoxycytidylate deaminase	N/A	N/A	0.521	0.843	0.363	5e-12

>sp|Q5M9G0|DCTD_RAT Deoxycytidylate deaminase OS=Rattus norvegicus GN=Dctd PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 99/125 (79%), Gaps = 5/125 (4%)

Query: 83  KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
           K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct: 7   KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66

Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
           W +   ++LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67  WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query: 198 YMCDK 202
           +M DK
Sbjct: 127 FMSDK 131

Supplies the nucleotide substrate for thymidylate synthetase.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 1EC: 2

>sp|Q8K2D6|DCTD_MOUSE Deoxycytidylate deaminase OS=Mus musculus GN=Dctd PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 83/125 (66%), Positives = 99/125 (79%), Gaps = 5/125 (4%)

Query: 83  KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
           K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct: 7   KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66

Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
           W +   ++LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67  WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query: 198 YMCDK 202
           +M DK
Sbjct: 127 FMSDK 131

Supplies the nucleotide substrate for thymidylate synthetase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 99/125 (79%), Gaps = 5/125 (4%)

Query: 83  KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
           K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD+ P
Sbjct: 7   KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLP 66

Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
           W +   ++LD     +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67  WRRTAKNKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query: 198 YMCDK 202
           +M DK
Sbjct: 127 FMSDK 131

Supplies the nucleotide substrate for thymidylate synthetase.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2

 Score =  176 bits (446), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 98/125 (78%), Gaps = 5/125 (4%)

Query: 83  KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
           K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct: 7   KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 66

Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
           W +   ++LD     +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 67  WRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query: 198 YMCDK 202
           +M DK
Sbjct: 127 FMSDK 131

Supplies the nucleotide substrate for thymidylate synthetase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|Q9VWA2|DCTD_DROME Probable deoxycytidylate deaminase OS=Drosophila melanogaster GN=CG6951 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/131 (54%), Positives = 87/131 (66%), Gaps = 11/131 (8%)

Query: 82  HKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF 141
           HKR  + L W +YFMA++ L AKRSKDPVT+VGA IV+  N+IV  GYNG P  CSDD F
Sbjct: 20  HKR-KEYLHWDDYFMATSLLSAKRSKDPVTQVGACIVDSQNRIVAIGYNGFPRNCSDDVF 78

Query: 142 PWDK-----NTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQS 191
           PW K        D L+     + HAE NAILN N       +LYT+LFPCNECAK+IIQ 
Sbjct: 79  PWSKAKKGSQEFDPLEDKKMYVVHAEANAILNSNGMSLSGTRLYTTLFPCNECAKLIIQV 138

Query: 192 GIKEVIYMCDK 202
           GI +V+Y+ DK
Sbjct: 139 GISQVLYLSDK 149

Supplies the nucleotide substrate for thymidylate synthetase.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans GN=ZK643.2 PE=3 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/143 (43%), Positives = 89/143 (62%), Gaps = 3/143 (2%)

Query: 60  DAAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVN 119
           D+A +H   E  K+N   +       +  L+ H+ F+  A + + RSKDP T+VG VIV+
Sbjct: 19  DSANLHTTLERLKININSDAKKLVDTNGDLKKHQRFLRIAKVTSLRSKDPNTQVGCVIVD 78

Query: 120 EDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE---LDMCHAEMNAILNKNSADTKRCKLYT 176
           +DN IV  GYNG PIG  DD F WDK   ++   L + HAEMNAI+NK       C +Y 
Sbjct: 79  KDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMNAIINKRCTTLHDCTVYV 138

Query: 177 SLFPCNECAKVIIQSGIKEVIYM 199
           +LFPCN+CA+++IQS +K+V ++
Sbjct: 139 TLFPCNKCAQMLIQSRVKKVYFL 161

Supplies the nucleotide substrate for thymidylate synthetase.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|P33968|YLXG_VIBFI Uncharacterized deaminase in luxG 3'region OS=Vibrio fischeri PE=3 SV=1

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 61/109 (55%), Gaps = 3/109 (2%)

Query: 88  VLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
           + +W + F   A LV   SKDP T+VGAVI  + N+IV  G+NG P G SD     D+  
Sbjct: 2   ISKWAKRFFQMAELVGSWSKDPSTQVGAVI-TKHNRIVSVGFNGYPHGVSDSADT-DERE 59

Query: 148 HDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
              L   HAE NAIL     D + C ++ + FPC  CA  IIQ+GI +V
Sbjct: 60  IKYLKTLHAEENAILFAKR-DLEGCDIWVTHFPCPNCAAKIIQTGISKV 107

Vibrio fischeri (taxid: 668)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/119 (40%), Positives = 67/119 (56%), Gaps = 10/119 (8%)

Query: 89  LEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDE-FPWD 144
           + W++YFMA + L+A RS  P   VGA IV  D +++  GYNG   G   C+D+     D
Sbjct: 4   ISWNQYFMAQSHLLALRSTCPRLSVGATIVR-DKRMIAGGYNGSIAGGVHCADEGCLMID 62

Query: 145 KNTHDELDMCHAEMNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
            +    +   HAEMNAIL  +K    T   ++Y + +PC +C K IIQ+GIK V Y  D
Sbjct: 63  DHCARTI---HAEMNAILQCSKFGVPTDGAEIYVTHYPCIQCCKSIIQAGIKTVYYAED 118

Dispensable for transformability.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 3

EC: .

EC: 5

EC: .

EC: -

EC: .

EC: -

>sp|O43012|DCTD_SCHPO Deoxycytidylate deaminase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2G2.13c PE=3 SV=2

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 63  KVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDN 122
           K+H W ++ K + +   +P++       W  YFM  A L AKRS     RVG V+V   N
Sbjct: 152 KLHLWEKLQKADLL---NPNRFRPS---WDSYFMEMASLAAKRSNCMKRRVGCVLV-RGN 204

Query: 123 KIVGTGYNGMPIG---CSDDEFPWDKNTHD---ELDMC---HAEMNAILNKNSADT-KRC 172
           +++ TGYNG P G   C++   P   +      ELD C   HAE NA+L           
Sbjct: 205 RVIATGYNGTPRGATNCNEGGCPRCNSASSCGKELDTCLCLHAEENALLEAGRERVGNNA 264

Query: 173 KLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM 204
            LY    PC  C+  I Q GIKEV+Y     M
Sbjct: 265 ILYCDTCPCLTCSVKITQLGIKEVVYHTSYNM 296

Supplies the nucleotide substrate for thymidylate synthetase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

>sp|O22000|DCTD_BPMD2 Deoxycytidylate deaminase OS=Mycobacterium phage D29 GN=36.1 PE=3 SV=2

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 61/121 (50%), Gaps = 13/121 (10%)

Query: 90  EWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CS------DDE 140
           +W EYF+  A   A+RS    ++VGAV+V +D ++ GTGYNG P G   CS         
Sbjct: 5   DWDEYFLGIATAAAQRSDCERSKVGAVVV-KDRRVRGTGYNGAPAGAAGCSTCPRRLSGA 63

Query: 141 FPWDKNTHDELDMC---HAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
            P   +       C   HAE NA+L  +  D     LY +  PC  C+ +I  SGI+ V+
Sbjct: 64  VPGVSDYSSGATRCVAVHAEANALLYCDREDLIGATLYVTREPCYACSNLIAASGIERVV 123

Query: 198 Y 198
           Y
Sbjct: 124 Y 124

Mycobacterium (taxid: 1763)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
328709609	373	PREDICTED: hypothetical protein LOC10016	0.946	0.525	0.539	2e-50
114052458	189	DCMP deaminase [Bombyx mori] gi|95102556	0.642	0.703	0.650	6e-46
170037331	193	deoxycytidylate deaminase [Culex quinque	0.599	0.642	0.666	7e-45
443729740	238	hypothetical protein CAPTEDRAFT_150280 [	0.579	0.504	0.68	1e-44
157104304	197	deoxycytidylate deaminase [Aedes aegypti	0.603	0.634	0.679	2e-44
397637031	1155	hypothetical protein THAOC_05955 [Thalas	0.975	0.174	0.425	3e-44
193636783	220	PREDICTED: deoxycytidylate deaminase-lik	0.618	0.581	0.616	6e-44
332376376	222	unknown [Dendroctonus ponderosae]	0.589	0.549	0.653	6e-44
312374791	193	hypothetical protein AND_15517 [Anophele	0.584	0.626	0.661	7e-44
348530634	415	PREDICTED: hypothetical protein LOC10069	0.637	0.318	0.605	8e-44

>gi|328709609|ref|XP_001952788.2| PREDICTED: hypothetical protein LOC100161474 [Acyrthosiphon pisum]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/204 (53%), Positives = 135/204 (66%), Gaps = 8/204 (3%)

Query: 1   MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
           MNAILNKNS   + C ++ SL+PC+E AK+IIQSGIKEV+YM D    K    A+K+MFD
Sbjct: 132 MNAILNKNSIHIQNCTIFVSLYPCSEAAKIIIQSGIKEVVYMPDLKSSKDQ--ATKKMFD 189

Query: 61  AAKVHYWSEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNE 120
           A+ V         N + +  P      V      FMA A+L A RSKDPV +VGA IVN 
Sbjct: 190 ASGVEIREHTPNQNIIIS-FPKLDSPVVDLSRNLFMAIAYLTAMRSKDPVCQVGACIVNS 248

Query: 121 DNKIVGTGYNGMPIGCSDDEFPWDKNTHDELD----MCHAEMNAILNKNSA-DTKRCKLY 175
           DN IVGTGYNGMP GC+DDEFPW  N +  L+    +CHAEMNA+  K+S  + K C LY
Sbjct: 249 DNTIVGTGYNGMPTGCNDDEFPWGNNKNLTLNKFIYVCHAEMNAVFYKSSMINVKDCTLY 308

Query: 176 TSLFPCNECAKVIIQSGIKEVIYM 199
            + FPC ECAK+IIQSGIKEV+Y+
Sbjct: 309 VTRFPCIECAKIIIQSGIKEVVYL 332

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114052458|ref|NP_001040508.1| DCMP deaminase [Bombyx mori] gi|95102556|gb|ABF51216.1| DCMP deaminase [Bombyx mori]

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 93/143 (65%), Positives = 107/143 (74%), Gaps = 10/143 (6%)

Query: 70  MDKMNGVQNGSPH-----KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKI 124
           MD    + N S H     K+ +D ++W EYFMA AFL AKRSKDP T+VGA IVN DNKI
Sbjct: 1   MDLTENIANISLHEEQTAKKRNDYIDWQEYFMAVAFLAAKRSKDPKTQVGACIVNNDNKI 60

Query: 125 VGTGYNGMPIGCSDDEFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLF 179
           VG GYNGMPIGC+DD+FPW KNT   LD     +CHAEMNAILNKNSAD K C +Y  LF
Sbjct: 61  VGIGYNGMPIGCNDDDFPWGKNTPSPLDSKYLYVCHAEMNAILNKNSADVKDCTIYVGLF 120

Query: 180 PCNECAKVIIQSGIKEVIYMCDK 202
           PCNECAK+IIQSGIK+V+Y+ DK
Sbjct: 121 PCNECAKMIIQSGIKKVVYLSDK 143

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037331|ref|XP_001846512.1| deoxycytidylate deaminase [Culex quinquefasciatus] gi|167880421|gb|EDS43804.1| deoxycytidylate deaminase [Culex quinquefasciatus]

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 86/129 (66%), Positives = 103/129 (79%), Gaps = 5/129 (3%)

Query: 80  SPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDD 139
           S  ++  D L+W+EYFMA+AFL AKRSKDP T+VGA IVN++ KIVG GYNG PIGC DD
Sbjct: 14  SLEQKRADYLDWNEYFMATAFLAAKRSKDPNTQVGACIVNDERKIVGVGYNGFPIGCGDD 73

Query: 140 EFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIK 194
           +FPW KN++D LD     +CHAEMNAILNKNS+D K C +Y +LFPCNECAK+IIQS I+
Sbjct: 74  DFPWGKNSNDPLDTKYLYVCHAEMNAILNKNSSDVKNCTMYVALFPCNECAKIIIQSRIR 133

Query: 195 EVIYMCDKQ 203
           EVIYM DK 
Sbjct: 134 EVIYMSDKH 142

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443729740|gb|ELU15543.1| hypothetical protein CAPTEDRAFT_150280 [Capitella teleta]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/125 (68%), Positives = 100/125 (80%), Gaps = 5/125 (4%)

Query: 83  KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
           K+ +D L W +YFMA AFL A+RSKDP T+VGA +VN +NKIVGTGYNGMPIGCSDD  P
Sbjct: 49  KKREDYLSWPDYFMAIAFLSAQRSKDPRTQVGACVVNSENKIVGTGYNGMPIGCSDDNLP 108

Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
           WD+   +ELD     +CHAE+NAILNKNS+D K C +Y +LFPCNECAKVIIQSGI+ VI
Sbjct: 109 WDRKAENELDTKYLYVCHAELNAILNKNSSDVKNCTIYVALFPCNECAKVIIQSGIRCVI 168

Query: 198 YMCDK 202
           YM DK
Sbjct: 169 YMSDK 173

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|157104304|ref|XP_001648345.1| deoxycytidylate deaminase [Aedes aegypti] gi|108869217|gb|EAT33442.1| AAEL014287-PA [Aedes aegypti]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 89/131 (67%), Positives = 102/131 (77%), Gaps = 6/131 (4%)

Query: 78  NGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCS 137
           N S  KR D  L+W+EYFMA+AFL A+RSKDP T+VGA IVNE+ KIVG GYNG P+GCS
Sbjct: 12  NLSEQKRAD-YLDWNEYFMATAFLAARRSKDPNTQVGACIVNEERKIVGVGYNGFPLGCS 70

Query: 138 DDEFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSG 192
           DDEFPW K + D L      +CHAEMNAILNKNS+D K C +Y +LFPCNECAK+IIQS 
Sbjct: 71  DDEFPWGKASLDPLGTKYLYVCHAEMNAILNKNSSDVKNCTMYVALFPCNECAKIIIQSK 130

Query: 193 IKEVIYMCDKQ 203
           IKEVIYM DK 
Sbjct: 131 IKEVIYMSDKH 141

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|397637031|gb|EJK72503.1| hypothetical protein THAOC_05955 [Thalassiosira oceanica]

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 105/247 (42%), Positives = 136/247 (55%), Gaps = 45/247 (18%)

Query: 1   MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
           +NAILNK S+D    +++T  FP NECAK IIQSGI EV+Y+ D      ++ AS+ +F+
Sbjct: 443 INAILNKCSSDVVGARIFTPNFPSNECAKFIIQSGITEVVYVNDDEHDSDSSRASRILFE 502

Query: 61  AAKVHYWS--------------------------------EMDKMNGVQ----NGSPHK- 83
            + V                                    EM++  G+     N  P K 
Sbjct: 503 VSGVKTTKMRPTNPRVEIDFGTGSSVTAADETDRSNLDEDEMERHLGLMQREANIDPFKF 562

Query: 84  ---RVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDE 140
              +  D L W  YFM  AFL A+RSKDP T+VGA IV+E+  IVG GYNG+P  C D+ 
Sbjct: 563 KVRKRSDYLSWDSYFMGVAFLSAQRSKDPSTQVGACIVDENKCIVGIGYNGLPRNCDDET 622

Query: 141 FPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKE 195
            PW +    EL      + HAE+NAILNK SA  +   LY +LFPCNEC KVIIQSGIKE
Sbjct: 623 LPWARTGDCELHKKYLYVVHAEVNAILNKCSASVRGATLYVALFPCNECTKVIIQSGIKE 682

Query: 196 VIYMCDK 202
           V+++ DK
Sbjct: 683 VVFIDDK 689

Source: Thalassiosira oceanica

Species: Thalassiosira oceanica

Genus: Thalassiosira

Family: Thalassiosiraceae

Class: Coscinodiscophyceae

Phylum: Bacillariophyta

Superkingdom: Eukaryota

>gi|193636783|ref|XP_001945167.1| PREDICTED: deoxycytidylate deaminase-like [Acyrthosiphon pisum]

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 82/133 (61%), Positives = 104/133 (78%), Gaps = 5/133 (3%)

Query: 75  GVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPI 134
            ++  + +++  + L W ++FMA+AFLVAKRSKDPVT+VGA IV  D KIVGTGYNGMPI
Sbjct: 33  SIETETLNEKRKNYLSWDDFFMATAFLVAKRSKDPVTQVGACIVTPDKKIVGTGYNGMPI 92

Query: 135 GCSDDEFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVII 189
           GC+DD FPW KN   +L+     +CHAEMNA+LNKNS D + C +Y +LFPCNECAK+II
Sbjct: 93  GCNDDNFPWGKNNPSKLENKYFYVCHAEMNAVLNKNSMDVRNCTIYVALFPCNECAKIII 152

Query: 190 QSGIKEVIYMCDK 202
           QSGIKEV+Y+ DK
Sbjct: 153 QSGIKEVVYLSDK 165

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376376|gb|AEE63328.1| unknown [Dendroctonus ponderosae]

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 100/127 (78%), Gaps = 5/127 (3%)

Query: 82  HKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF 141
           +++ +D LEW +YFMA+AFL AKRSKDP ++VGA IVNEDN IVG GYNGMP  CSDDEF
Sbjct: 11  NRKREDYLEWPDYFMATAFLAAKRSKDPCSQVGACIVNEDNVIVGIGYNGMPKNCSDDEF 70

Query: 142 PWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
           PW K +  +LD     +CHAE+NAILNKNS D + C +Y  LFPCNECAKVIIQSG+K++
Sbjct: 71  PWSKGSKSDLDNKYLYVCHAELNAILNKNSVDVRNCTMYVGLFPCNECAKVIIQSGVKQI 130

Query: 197 IYMCDKQ 203
           IYM DK 
Sbjct: 131 IYMSDKH 137

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374791|gb|EFR22274.1| hypothetical protein AND_15517 [Anopheles darlingi]

 Score =  182 bits (462), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 99/127 (77%), Gaps = 6/127 (4%)

Query: 82  HKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF 141
           HKR  D ++W EYFMA AFL AKRSKDP T+VGA IVNED ++VG GYNG P GC+DDEF
Sbjct: 16  HKR-KDTIDWTEYFMAMAFLAAKRSKDPSTQVGACIVNEDKRVVGLGYNGFPTGCNDDEF 74

Query: 142 PWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEV 196
           PW K + D L+     +CHAE+NAILNKNSAD K C +Y +LFPCNECAK+IIQS I+EV
Sbjct: 75  PWSKTSSDPLETKYLYVCHAEVNAILNKNSADVKNCTMYVALFPCNECAKIIIQSAIREV 134

Query: 197 IYMCDKQ 203
           +YM DK 
Sbjct: 135 VYMSDKH 141

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348530634|ref|XP_003452815.1| PREDICTED: hypothetical protein LOC100699771 [Oreochromis niloticus]

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 105/137 (76%), Gaps = 5/137 (3%)

Query: 71  DKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYN 130
           D +  V N    K+ +D LEW EYFMA AFL A+RSKDP ++VGA IVN++NKIVG GYN
Sbjct: 230 DGIQSVANFGKTKKREDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNQENKIVGIGYN 289

Query: 131 GMPIGCSDDEFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECA 185
           GMP GC+DD  PW ++  D+LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECA
Sbjct: 290 GMPNGCNDDLLPWSRSADDQLDTKYPYVCHAELNAIMNKNSADVKDCTMYVALFPCNECA 349

Query: 186 KVIIQSGIKEVIYMCDK 202
           K+IIQ+G+KEV+Y+ DK
Sbjct: 350 KLIIQAGLKEVVYLSDK 366

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
UNIPROTKB|Q5ZJM4	190	DCTD "Uncharacterized protein"	0.628	0.684	0.629	4e-42
ZFIN|ZDB-GENE-050417-116	201	dctd "dCMP deaminase" [Danio r	0.647	0.666	0.597	8.4e-42
MGI|MGI:2444529	178	Dctd "dCMP deaminase" [Mus mus	0.579	0.674	0.664	8.4e-42
RGD|1359671	178	Dctd "dCMP deaminase" [Rattus	0.579	0.674	0.664	8.4e-42
UNIPROTKB|Q5M9G0	178	Dctd "Deoxycytidylate deaminas	0.579	0.674	0.664	8.4e-42
UNIPROTKB|F1RT14	178	DCTD "Uncharacterized protein"	0.589	0.685	0.661	1.4e-41
UNIPROTKB|D6RBJ9	169	DCTD "Deoxycytidylate deaminas	0.579	0.710	0.656	1.7e-41
UNIPROTKB|P32321	178	DCTD "Deoxycytidylate deaminas	0.579	0.674	0.656	1.7e-41
UNIPROTKB|A6QQC3	178	DCTD "Uncharacterized protein"	0.589	0.685	0.653	2.8e-41
UNIPROTKB|D6RBN2	120	DCTD "Deoxycytidylate deaminas	0.526	0.908	0.640	1.3e-36

UNIPROTKB|Q5ZJM4 DCTD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 85/135 (62%), Positives = 102/135 (75%)

Query:    73 MNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGM 132
             +NG  N +  K+ +D LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGM
Sbjct:     9 VNGFGNEASCKKREDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNSENKIVGIGYNGM 68

Query:   133 PIGCSDDEFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKV 187
             P GCSDD  PW +     LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+
Sbjct:    69 PNGCSDDVLPWTRAAAHSLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKL 128

Query:   188 IIQSGIKEVIYMCDK 202
             IIQ+GIKEVI+M DK
Sbjct:   129 IIQAGIKEVIFMSDK 143

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004132 "dCMP deaminase activity" evidence=IEA

ZFIN|ZDB-GENE-050417-116 dctd "dCMP deaminase" [Danio rerio (taxid:7955)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/139 (59%), Positives = 106/139 (76%)

Query:    69 EMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTG 128
             E+ ++NG  +    K+  D LEW EYFMA AFL A+RSKDP ++VGA IVN++NKIVG G
Sbjct:     8 EIVQLNGNHSECLTKKRQDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNQENKIVGIG 67

Query:   129 YNGMPIGCSDDEFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNE 183
             YNGMP GC DD  PW ++  ++LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNE
Sbjct:    68 YNGMPNGCDDDLLPWSRSADNKLDTKYPYVCHAELNAIMNKNSADVKGCSIYVALFPCNE 127

Query:   184 CAKVIIQSGIKEVIYMCDK 202
             CAK+IIQ+GIK+VIY+ DK
Sbjct:   128 CAKLIIQAGIKDVIYLSDK 146

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2444529 Dctd "dCMP deaminase" [Mus musculus (taxid:10090)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/125 (66%), Positives = 99/125 (79%)

Query:    83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
             K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct:     7 KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66

Query:   143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
             W +   ++LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct:    67 WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query:   198 YMCDK 202
             +M DK
Sbjct:   127 FMSDK 131

GO:0003824 "catalytic activity" evidence=IEA

GO:0004132 "dCMP deaminase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1359671 Dctd "dCMP deaminase" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/125 (66%), Positives = 99/125 (79%)

Query:    83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
             K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct:     7 KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66

Query:   143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
             W +   ++LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct:    67 WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query:   198 YMCDK 202
             +M DK
Sbjct:   127 FMSDK 131

GO:0004132 "dCMP deaminase activity" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

UNIPROTKB|Q5M9G0 Dctd "Deoxycytidylate deaminase" [Rattus norvegicus (taxid:10116)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/125 (66%), Positives = 99/125 (79%)

Query:    83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
             K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct:     7 KKRDDYLEWPEYFMAVAFLSAQRSKDPSSQVGACIVNTENKIVGIGYNGMPNGCSDDLLP 66

Query:   143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
             W +   ++LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct:    67 WRRTAENKLDTKYPYVCHAELNAIMNKNSADVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query:   198 YMCDK 202
             +M DK
Sbjct:   127 FMSDK 131

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RT14 DCTD "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 84/127 (66%), Positives = 99/127 (77%)

Query:    81 PHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDE 140
             P K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD 
Sbjct:     5 PCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL 64

Query:   141 FPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKE 195
              PW +   + LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKE
Sbjct:    65 LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKE 124

Query:   196 VIYMCDK 202
             VI+M DK
Sbjct:   125 VIFMSDK 131

GO:0004132 "dCMP deaminase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RBJ9 DCTD "Deoxycytidylate deaminase" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
             K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct:     7 KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 66

Query:   143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
             W +   ++LD     +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct:    67 WRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query:   198 YMCDK 202
             +M DK
Sbjct:   127 FMSDK 131

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

UNIPROTKB|P32321 DCTD "Deoxycytidylate deaminase" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 82/125 (65%), Positives = 98/125 (78%)

Query:    83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
             K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct:     7 KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 66

Query:   143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
             W +   ++LD     +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct:    67 WRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 126

Query:   198 YMCDK 202
             +M DK
Sbjct:   127 FMSDK 131

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA

GO:0006220 "pyrimidine nucleotide metabolic process" evidence=TAS

GO:0004132 "dCMP deaminase activity" evidence=EXP

GO:0005829 "cytosol" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046134 "pyrimidine nucleoside biosynthetic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|A6QQC3 DCTD "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 83/127 (65%), Positives = 99/127 (77%)

Query:    81 PHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDE 140
             P ++ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD 
Sbjct:     5 PCRKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNAENKIVGIGYNGMPNGCSDDL 64

Query:   141 FPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKE 195
              PW +   + LD     +CHAE+NAI+NKNSAD K C +Y +LFPCNECAK+IIQ+GIKE
Sbjct:    65 LPWRRTAENILDTKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNECAKLIIQAGIKE 124

Query:   196 VIYMCDK 202
             VI+M DK
Sbjct:   125 VIFMSDK 131

GO:0004132 "dCMP deaminase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|D6RBN2 DCTD "Deoxycytidylate deaminase" [Homo sapiens (taxid:9606)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 73/114 (64%), Positives = 88/114 (77%)

Query:    83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
             K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct:     7 KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 66

Query:   143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQS 191
             W +   ++LD     +CHAE+NAI+NKNS D K C +Y +LFPCNECAK+IIQ+
Sbjct:    67 WRRTAENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQA 120

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RC69	DCTD_PONAB	3, ., 5, ., 4, ., 1, 2	0.656	0.5797	0.6741	yes	N/A
Q9VWA2	DCTD_DROME	3, ., 5, ., 4, ., 1, 2	0.5496	0.5797	0.5911	yes	N/A
Q5M9G0	DCTD_RAT	3, ., 5, ., 4, ., 1, 2	0.664	0.5797	0.6741	yes	N/A
Q8K2D6	DCTD_MOUSE	3, ., 5, ., 4, ., 1, 2	0.664	0.5797	0.6741	yes	N/A
P30648	DCTD_CAEEL	3, ., 5, ., 4, ., 1, 2	0.4335	0.6763	0.7106	yes	N/A
P32321	DCTD_HUMAN	3, ., 5, ., 4, ., 1, 2	0.656	0.5797	0.6741	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4	0.766
3rd Layer	3.5.4.12	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
cd01286	131	cd01286, deoxycytidylate_deaminase, Deoxycytidylat	1e-44
COG2131	164	COG2131, ComEB, Deoxycytidylate deaminase [Nucleot	1e-35
pfam00383	104	pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti	2e-28
cd00786	96	cd00786, cytidine_deaminase-like, Cytidine and deo	2e-22
TIGR02571	151	TIGR02571, ComEB, ComE operon protein 2	9e-20
PHA02588	168	PHA02588, cd, deoxycytidylate deaminase; Provision	3e-19
cd01286	131	cd01286, deoxycytidylate_deaminase, Deoxycytidylat	2e-15
COG0590	152	COG0590, CumB, Cytosine/adenosine deaminases [Nucl	5e-15
cd01285	109	cd01285, nucleoside_deaminase, Nucleoside deaminas	3e-12
COG0117	146	COG0117, RibD, Pyrimidine deaminase [Coenzyme meta	4e-12
cd01284	115	cd01284, Riboflavin_deaminase-reductase, Riboflavi	3e-11
cd00786	96	cd00786, cytidine_deaminase-like, Cytidine and deo	4e-11
COG2131	164	COG2131, ComEB, Deoxycytidylate deaminase [Nucleot	4e-10
PRK10860	172	PRK10860, PRK10860, tRNA-specific adenosine deamin	4e-09
pfam00383	104	pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti	1e-08
TIGR02571	151	TIGR02571, ComEB, ComE operon protein 2	3e-07
TIGR00326	344	TIGR00326, eubact_ribD, riboflavin biosynthesis pr	3e-07
PHA02588	168	PHA02588, cd, deoxycytidylate deaminase; Provision	2e-06
cd01285	109	cd01285, nucleoside_deaminase, Nucleoside deaminas	0.002
COG0590	152	COG0590, CumB, Cytosine/adenosine deaminases [Nucl	0.004

>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain

 Score =  144 bits (366), Expect = 1e-44
 Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 10/125 (8%)

Query: 92  HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPW----DKNT 147
            EYFMA A L A RS  P  +VGAVIV  D +I+ TGYNG P G            D  +
Sbjct: 1   DEYFMAIARLAALRSTCPRRQVGAVIVK-DKRIISTGYNGSPSGLPHCAEVGCERDDLPS 59

Query: 148 HDELDMC---HAEMNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDK 202
            ++   C   HAE NAIL   ++    +   LY +LFPC ECAK+IIQ+GIK+V+Y    
Sbjct: 60  GEDQKCCRTVHAEQNAILQAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPY 119

Query: 203 QMSYK 207
                
Sbjct: 120 DDDDP 124

Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Length = 131

>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism]

 Score =  122 bits (309), Expect = 1e-35
 Identities = 53/125 (42%), Positives = 64/125 (51%), Gaps = 11/125 (8%)

Query: 91  WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPW----DKN 146
           W EYFMA A LVA RS  P  +VGAVIV  D +I+ TGYNG P G               
Sbjct: 8   WDEYFMAIAELVALRSTCPRRQVGAVIVK-DGRIIATGYNGAPSGEDHCIDRGCLRDKVV 66

Query: 147 THDELDMC----HAEMNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
                  C    HAE NAIL   ++    +   LY + FPC+ CAK+IIQ+GIKEV+Y  
Sbjct: 67  FVTTCGHCCRTLHAEQNAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAE 126

Query: 201 DKQMS 205
                
Sbjct: 127 PYPTE 131

Length = 164

>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region

 Score =  102 bits (256), Expect = 2e-28
 Identities = 45/118 (38%), Positives = 55/118 (46%), Gaps = 20/118 (16%)

Query: 89  LEWHEYFMASAFLVAKRS--KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKN 146
           +EW EYFM  A   AKR+        VGAVIV  D  I+ TGYNG   G           
Sbjct: 1   MEWDEYFMRLALEAAKRAYTPYSNFPVGAVIVKNDGGIIATGYNGENAGYD--------P 52

Query: 147 THDELDMCHAEMNAILNKNSA----DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
           T       HAE NAI N          +   LY +L PC  C + II+SGIK+V++  
Sbjct: 53  T------IHAERNAIRNAGRLGEGIKLEGATLYVTLEPCGMCRQAIIESGIKKVVFGT 104

Length = 104

>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region

 Score = 86.8 bits (215), Expect = 2e-22
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)

Query: 93  EYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELD 152
              + +A L    +K+   +VGA +VN+           +  GC+ +   +         
Sbjct: 2   TEALKAADLGY--AKESNFQVGACLVNKK------DGGKVGRGCNIENAAYSM------- 46

Query: 153 MCHAEMNAILNKNS-ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
             HAE  A+ N  S  DTK   LY +L PC  CA++II+ GIK+VI +  
Sbjct: 47  CNHAERTALFNAGSEGDTKGQMLYVALSPCGACAQLIIELGIKDVIVVLT 96

The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Length = 96

>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2

 Score = 81.4 bits (201), Expect = 9e-20
 Identities = 47/122 (38%), Positives = 65/122 (53%), Gaps = 16/122 (13%)

Query: 89  LEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDK 145
           ++W +YFMA + L+A RS      VGA IV  D +I+  GYNG   G   C D+      
Sbjct: 3   IKWDQYFMAQSHLLALRSTCTRLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDE------ 55

Query: 146 NTHDELDMC----HAEMNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYM 199
             +     C    HAEMNA+L   K    T+  ++Y + FPC +C K IIQ+GIK++ Y 
Sbjct: 56  GCYVVDGHCVRTIHAEMNALLQCAKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYA 115

Query: 200 CD 201
            D
Sbjct: 116 QD 117

This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. Length = 151

>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 22/128 (17%)

Query: 95  FMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSD--DEFPWDKNT-- 147
           ++  A+LV++ SK    +VGAVI   + +I+ TGYNG P G   C D  +E  W  +   
Sbjct: 6   YLQIAYLVSQESKCVSWKVGAVIEK-NGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGK 64

Query: 148 --------HDELDMC---HAEMNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIK 194
                   H         HAE+NAIL   +N    +   +Y +  PC +CAK I QSGIK
Sbjct: 65  LKKEHRPEHSAWSSKNEIHAELNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIK 124

Query: 195 EVIYMCDK 202
           +++Y C+K
Sbjct: 125 KLVY-CEK 131

Length = 168

>gnl|CDD|238613 cd01286, deoxycytidylate_deaminase, Deoxycytidylate deaminase domain

 Score = 69.6 bits (171), Expect = 2e-15
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 1   MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
            NAIL   ++    +   LY +LFPC ECAK+IIQ+GIK+V+Y        P   A+  +
Sbjct: 73  QNAILQAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDDDP---AAAEL 129

Query: 59  FD 60
            +
Sbjct: 130 LE 131

Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor. Length = 131

>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]

 Score = 68.9 bits (169), Expect = 5e-15
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 25/119 (21%)

Query: 88  VLEWHEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPW 143
           + E  E FM  A   AK++ D    PV   GAVIV+ D +I+  G+N             
Sbjct: 4   LSEKDEDFMREALKEAKKAGDEGEVPV---GAVIVDADGEIIARGHN------------- 47

Query: 144 DKNTHDELDMCHAEMNAILN----KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
            +   D     HAE+ AI        +   K C LY +L PC  CA  II + I  V+Y
Sbjct: 48  -RREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVY 105

Length = 152

>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 27/112 (24%)

Query: 96  MASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
           M  A  +A+++      P    GAVIV++D K++  G+N                   + 
Sbjct: 1   MRLAIELARKALAEGEVPF---GAVIVDDDGKVIARGHN---------------RVEQDG 42

Query: 152 D-MCHAEMNAILN----KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
           D   HAE+ AI N      S     C LYT+L PC  CA  ++ + IK V+Y
Sbjct: 43  DPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPCPMCAGALLWARIKRVVY 94

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109

>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism]

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 30/122 (24%)

Query: 90  EWHEYFMASAFLVAKRSKDPVT---RVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKN 146
           E  E +M  A  +A++ +   +    VG VIV  D +IVG GY                 
Sbjct: 4   ELDERYMERALELAEKGQGTTSPNPSVGCVIVK-DGEIVGEGY----------------- 45

Query: 147 THDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIY-M 199
            H++    HAE+ A L       +    Y +L PC+       CA  +I++G+  V+  M
Sbjct: 46  -HEKAGGPHAEVCA-LRMAGEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAM 103

Query: 200 CD 201
            D
Sbjct: 104 LD 105

Length = 146

>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 24/92 (26%)

Query: 113 VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRC 172
           VG VIV++D +IVG GY                  H +    HAE+NA+ +      +  
Sbjct: 21  VGCVIVDDDGEIVGEGY------------------HRKAGGPHAEVNALASAGEKLARGA 62

Query: 173 KLYTSLFPCNE------CAKVIIQSGIKEVIY 198
            LY +L PC+       C   II++GIK V+ 
Sbjct: 63  TLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVV 94

Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain. Length = 115

>gnl|CDD|238406 cd00786, cytidine_deaminase-like, Cytidine and deoxycytidylate deaminase zinc-binding region

 Score = 57.2 bits (138), Expect = 4e-11
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 1  MNAILNKNS-ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 44
            A+ N  S  DTK   LY +L PC  CA++II+ GIK+VI +  
Sbjct: 52 RTALFNAGSEGDTKGQMLYVALSPCGACAQLIIELGIKDVIVVLT 96

The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Length = 96

>gnl|CDD|225042 COG2131, ComEB, Deoxycytidylate deaminase [Nucleotide transport and metabolism]

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 1   MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
            NAIL   ++    +   LY + FPC+ CAK+IIQ+GIKEV+Y      +  A   S+ +
Sbjct: 82  QNAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVAPY-SQEL 140

Query: 59  FDAAKV 64
            + A V
Sbjct: 141 LEEAGV 146

Length = 164

>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional

 Score = 53.3 bits (128), Expect = 4e-09
 Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 32/118 (27%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
           HEY+M  A  +AKR+ D    PV   GAV+V+ +N+++G G+N  PIG            
Sbjct: 13  HEYWMRHALTLAKRAWDEREVPV---GAVLVH-NNRVIGEGWN-RPIG-----------R 56

Query: 148 HDELDMCHAEMNAIL-------NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
           HD     HAE+ A+        N    D     LY +L PC  CA  ++ S I  +++
Sbjct: 57  HDP--TAHAEIMALRQGGLVLQNYRLLDAT---LYVTLEPCVMCAGAMVHSRIGRLVF 109

Length = 172

>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 1   MNAILNKNSA----DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 43
            NAI N          +   LY +L PC  C + II+SGIK+V++  
Sbjct: 58  RNAIRNAGRLGEGIKLEGATLYVTLEPCGMCRQAIIESGIKKVVFGT 104

Length = 104

>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 2/48 (4%)

Query: 1   MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKH 46
           MNA+L   K    T+  ++Y + FPC +C K IIQ+GIK++ Y  D H
Sbjct: 72  MNALLQCAKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYH 119

This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity. Length = 151

>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 30/116 (25%)

Query: 96  MASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELD 152
           M  A  +AK+ +    P   VG VIV ++ +IVG G                   H +  
Sbjct: 1   MNRALDLAKKGQGTTHPNPLVGCVIV-KNGEIVGEGA------------------HQKAG 41

Query: 153 MCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIY-MCD 201
             HAE++A L +   + K    Y +L PC+       CA+ II++GIK+V+  M D
Sbjct: 42  EPHAEVHA-LRQAGENAKGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQD 96

This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]. Length = 344

>gnl|CDD|222894 PHA02588, cd, deoxycytidylate deaminase; Provisional

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 1   MNAIL--NKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA 51
           +NAIL   +N    +   +Y +  PC +CAK I QSGIK+++Y C+K+ +   
Sbjct: 86  LNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVY-CEKYDRNGP 137

Length = 168

>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 13  KRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK 47
             C LYT+L PC  CA  ++ + IK V+Y     K
Sbjct: 66  SGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPK 100

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source. Length = 109

>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 14/31 (45%), Positives = 17/31 (54%)

Query: 11  DTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 41
             K C LY +L PC  CA  II + I  V+Y
Sbjct: 75  RLKDCTLYVTLEPCPMCAGAIIWARIDRVVY 105

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
TIGR02571	151	ComEB ComE operon protein 2. This protein is found	100.0
cd01286	131	deoxycytidylate_deaminase Deoxycytidylate deaminas	99.97
COG2131	164	ComEB Deoxycytidylate deaminase [Nucleotide transp	99.97
KOG3127|consensus	230		99.97
PHA02588	168	cd deoxycytidylate deaminase; Provisional	99.97
PRK10860	172	tRNA-specific adenosine deaminase; Provisional	99.97
COG0590	152	CumB Cytosine/adenosine deaminases [Nucleotide tra	99.96
PF00383	102	dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam	99.95
cd01285	109	nucleoside_deaminase Nucleoside deaminases include	99.95
cd01284	115	Riboflavin_deaminase-reductase Riboflavin-specific	99.95
cd00786	96	cytidine_deaminase-like Cytidine and deoxycytidyla	99.92
COG0117	146	RibD Pyrimidine deaminase [Coenzyme metabolism]	99.92
PLN02807	380	diaminohydroxyphosphoribosylaminopyrimidine deamin	99.92
PRK10786	367	ribD bifunctional diaminohydroxyphosphoribosylamin	99.91
TIGR00326	344	eubact_ribD riboflavin biosynthesis protein RibD.	99.89
KOG1018|consensus	169		99.89
cd01283	112	cytidine_deaminase Cytidine deaminase zinc-binding	99.69
TIGR02571	151	ComEB ComE operon protein 2. This protein is found	99.67
PHA02588	168	cd deoxycytidylate deaminase; Provisional	99.66
COG2131	164	ComEB Deoxycytidylate deaminase [Nucleotide transp	99.63
cd01284	115	Riboflavin_deaminase-reductase Riboflavin-specific	99.55
PRK10860	172	tRNA-specific adenosine deaminase; Provisional	99.54
COG0117	146	RibD Pyrimidine deaminase [Coenzyme metabolism]	99.54
COG0590	152	CumB Cytosine/adenosine deaminases [Nucleotide tra	99.53
cd01286	131	deoxycytidylate_deaminase Deoxycytidylate deaminas	99.44
KOG3127|consensus	230		99.41
PLN02807	380	diaminohydroxyphosphoribosylaminopyrimidine deamin	99.4
cd01285	109	nucleoside_deaminase Nucleoside deaminases include	99.4
PRK10786	367	ribD bifunctional diaminohydroxyphosphoribosylamin	99.38
TIGR00326	344	eubact_ribD riboflavin biosynthesis protein RibD.	99.37
cd00786	96	cytidine_deaminase-like Cytidine and deoxycytidyla	99.3
PF14439	136	Bd3614-deam: Bd3614-like deaminase	99.29
KOG2771|consensus	344		99.27
TIGR01354	127	cyt_deam_tetra cytidine deaminase, homotetrameric.	99.24
PF00383	102	dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam	99.2
KOG1018|consensus	169		98.99
PRK06848	139	hypothetical protein; Validated	98.98
COG0295	134	Cdd Cytidine deaminase [Nucleotide transport and m	98.94
PRK08298	136	cytidine deaminase; Validated	98.86
PRK05578	131	cytidine deaminase; Validated	98.84
PRK09027	295	cytidine deaminase; Provisional	98.83
PRK12411	132	cytidine deaminase; Provisional	98.79
TIGR01355	283	cyt_deam_dimer cytidine deaminase, homodimeric. Th	98.65
TIGR01355	283	cyt_deam_dimer cytidine deaminase, homodimeric. Th	98.58
PRK14719	360	bifunctional RNAse/5-amino-6-(5-phosphoribosylamin	98.58
PLN02402	303	cytidine deaminase	98.49
KOG0833|consensus	173		98.43
PLN02182	339	cytidine deaminase	98.33
PRK09027	295	cytidine deaminase; Provisional	98.24
cd01283	112	cytidine_deaminase Cytidine deaminase zinc-binding	98.22
PLN02402	303	cytidine deaminase	98.17
PF14439	136	Bd3614-deam: Bd3614-like deaminase	97.97
KOG2771|consensus	344		97.78
PRK14719	360	bifunctional RNAse/5-amino-6-(5-phosphoribosylamin	97.77
PF14437	146	MafB19-deam: MafB19-like deaminase	96.72
PF08210	188	APOBEC_N: APOBEC-like N-terminal domain; InterPro:	95.6
PF08211	124	dCMP_cyt_deam_2: Cytidine and deoxycytidylate deam	95.31
PF14431	125	YwqJ-deaminase: YwqJ-like deaminase	95.03
PLN02182	339	cytidine deaminase	93.7
PF14427	118	Pput2613-deam: Pput_2613-like deaminase	89.73
PF08210	188	APOBEC_N: APOBEC-like N-terminal domain; InterPro:	86.0
TIGR01354	127	cyt_deam_tetra cytidine deaminase, homotetrameric.	82.0
PRK00881	513	purH bifunctional phosphoribosylaminoimidazolecarb	81.41

>TIGR02571 ComEB ComE operon protein 2

Probab=100.00  E-value=5.7e-33  Score=215.05  Aligned_cols=114  Identities=39%  Similarity=0.661  Sum_probs=95.2

Q ss_pred             chhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804          88 VLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDKNTHDELDMCHAEMNAILNK  164 (207)
Q Consensus        88 ~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~  164 (207)
                      +++||++||++|+++|++|.+++.||||||| +||+||++|+|+.+++   |.+.+....+++.++  +.|||++||.++
T Consensus         2 ~~~~d~~fM~~A~~~A~rs~~~~~~VGAVIV-~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~--~~HAE~nAI~~a   78 (151)
T TIGR02571         2 RIKWDQYFMAQSHLLALRSTCTRLSVGATIV-RDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVR--TIHAEMNALLQC   78 (151)
T ss_pred             CCcHHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEECCCCCCCCccccccccccccccCC--ccCHHHHHHHHH
Confidence            5689999999999999999999999999999 7999999999999876   323222212222345  899999999976


Q ss_pred             --CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         165 --NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       165 --~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                        .+..+.|++||||+|||+||+++|+++||++|||+.++++
T Consensus        79 ~~~~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~  120 (151)
T TIGR02571        79 AKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHN  120 (151)
T ss_pred             HhcCCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCC
Confidence              2456889999999999999999999999999999976654

This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.

>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain

Probab=99.97  E-value=1.1e-30  Score=198.19  Aligned_cols=111  Identities=46%  Similarity=0.655  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCC---------CCCCCCCChHHHHHHH
Q psy6804          92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKN---------THDELDMCHAEMNAIL  162 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~---------~~~~~~~~HAE~~Ai~  162 (207)
                      |++||++|+++|++|.++++|||||||+ +|+||++|+|++++++.+....+++.         +.++  +.|||++||.
T Consensus         1 d~~~m~~A~~~A~~s~~~~~~VGAViv~-~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~HAE~~Ai~   77 (131)
T cd01286           1 DEYFMAIARLAALRSTCPRRQVGAVIVK-DKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCR--TVHAEQNAIL   77 (131)
T ss_pred             CHHHHHHHHHHHHHcCCCCCCEEEEEEE-CCEEEEEeeCCCCCCCCCcccccccccccccccccccCC--CCCHHHHHHH
Confidence            4679999999999999999999999995 78999999999998755544444321         2344  8999999999


Q ss_pred             ccC--CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         163 NKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       163 ~~~--~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      ++.  +..+.|++||||+|||+||+++|+++||++|||+.+++.+
T Consensus        78 ~a~~~~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~  122 (131)
T cd01286          78 QAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD  122 (131)
T ss_pred             HHhHcCCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence            873  4577899999999999999999999999999999988763

Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.

>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]

Probab=99.97  E-value=1.8e-30  Score=200.46  Aligned_cols=117  Identities=48%  Similarity=0.737  Sum_probs=98.6

Q ss_pred             chh-HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCCCCCCCCC-----CCCCCChHHH
Q psy6804          88 VLE-WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDKNTH-----DELDMCHAEM  158 (207)
Q Consensus        88 ~~~-~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~~~~~~~~-----~~~~~~HAE~  158 (207)
                      +++ ||++||++|...|.+|.++++.|||+|| +||+||++|+|+.|.+   |.+.+....+...     +...++|||+
T Consensus         4 R~~~wdeyfm~~A~l~a~Rstc~r~~VGAvIv-kd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~   82 (164)
T COG2131           4 RPSMWDEYFMAIAELVALRSTCPRRQVGAVIV-KDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQ   82 (164)
T ss_pred             cccHHHHHHHHHHHHHHHHccCcccceeEEEE-eCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHH
Confidence            345 9999999999999999999999999999 5999999999999988   3344333322111     1122899999


Q ss_pred             HHHHcc--CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         159 NAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       159 ~Ai~~~--~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      |||.++  .+..+.|++||+|++||.+|++.|+++||++|||..++++.
T Consensus        83 NAil~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~  131 (164)
T COG2131          83 NAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTE  131 (164)
T ss_pred             HHHHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcc
Confidence            999987  56777899999999999999999999999999999999865

>KOG3127|consensus

Probab=99.97  E-value=1.4e-30  Score=207.58  Aligned_cols=121  Identities=59%  Similarity=0.995  Sum_probs=112.4

Q ss_pred             CCCcCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCC---CC---CCChH
Q psy6804          83 KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD---EL---DMCHA  156 (207)
Q Consensus        83 ~~~~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~---~~---~~~HA  156 (207)
                      .++..+++||++||.+|...|+||++|+++||||||+++++||++|+|++|.||.+..+||.++...   +.   -++||
T Consensus        58 ~k~~~~lswd~yFM~iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HA  137 (230)
T KOG3127|consen   58 LKRNGYLSWDDYFMAIAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHA  137 (230)
T ss_pred             cccccCccHHHHHHHHHHHHHHhccCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeeh
Confidence            7888899999999999999999999999999999999999999999999999999999999876543   11   18999


Q ss_pred             HHHHHHccCCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCC
Q psy6804         157 EMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ  203 (207)
Q Consensus       157 E~~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~  203 (207)
                      |+|||..++...+.++++|+|+.||..|+..|+++||++|+|..++.
T Consensus       138 E~NAi~~~~~~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~  184 (230)
T KOG3127|consen  138 EENAILNKGRERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYY  184 (230)
T ss_pred             HHHHHHHhCccccCCceEEEeecchHHHHHHHHHhhhhheeeccccc
Confidence            99999999999999999999999999999999999999999998763

>PHA02588 cd deoxycytidylate deaminase; Provisional

Probab=99.97  E-value=7.1e-30  Score=201.10  Aligned_cols=110  Identities=37%  Similarity=0.634  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCC---------CCCCCC--------CCCC
Q psy6804          92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEF---------PWDKNT--------HDEL  151 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~---------~~~~~~--------~~~~  151 (207)
                      |++||++|+++|++|.+++.||||||| ++|+||++|+|+.|.+   |.+...         .+..+.        .++ 
T Consensus         3 d~~fM~~A~~~A~~s~~~~~~VGAVIV-~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (168)
T PHA02588          3 DSTYLQIAYLVSQESKCVSWKVGAVIE-KNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKN-   80 (168)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCC-
Confidence            678999999999999999999999999 7999999999999876   333211         111110        123 


Q ss_pred             CCChHHHHHHHccC--CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         152 DMCHAEMNAILNKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       152 ~~~HAE~~Ai~~~~--~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                       +.|||++||+++.  +..+.|++||||+|||+||+++|+++||+||||+.+++.
T Consensus        81 -~~HAE~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~  134 (168)
T PHA02588         81 -EIHAELNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDR  134 (168)
T ss_pred             -CccHHHHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCC
Confidence             8999999999873  567899999999999999999999999999999987553

>PRK10860 tRNA-specific adenosine deaminase; Provisional

Probab=99.97  E-value=5.3e-30  Score=202.43  Aligned_cols=100  Identities=33%  Similarity=0.528  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          90 EWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      .+|++||++|+++|+++.+. +.||||||| .+|+||++|+|+...            ..|+  +.|||++||+++    
T Consensus        11 ~~~~~~m~~A~~~A~~a~~~g~~pvGAVIV-~~g~IIa~g~N~~~~------------~~d~--~~HAEi~Ai~~a~~~~   75 (172)
T PRK10860         11 FSHEYWMRHALTLAKRAWDEREVPVGAVLV-HNNRVIGEGWNRPIG------------RHDP--TAHAEIMALRQGGLVL   75 (172)
T ss_pred             ccHHHHHHHHHHHHHHhhccCCCCEEEEEE-eCCEEEEEeeCCCCC------------CCCC--ccCHHHHHHHHHHHhc
Confidence            45889999999999999764 689999999 489999999999754            2356  899999999986    


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      +...+.|++||||+|||+||+++|+|+||+||||+.++++
T Consensus        76 ~~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~  115 (172)
T PRK10860         76 QNYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAK  115 (172)
T ss_pred             CCCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCC
Confidence            3457789999999999999999999999999999988765

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=1.3e-29  Score=196.84  Aligned_cols=103  Identities=37%  Similarity=0.515  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---
Q psy6804          89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---  164 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---  164 (207)
                      ..+|+.||++|+.+|+++.+. +.|||||||+.+|+||+.|+|....            .+||  +.|||++||+.+   
T Consensus         5 ~~~~~~~m~~al~~A~~a~~~ge~PvGaviV~~~~~ii~~~~N~~~~------------~~dp--taHAEi~air~a~~~   70 (152)
T COG0590           5 SEKDEDFMREALKEAKKAGDEGEVPVGAVIVDADGEIIARGHNRREE------------DNDP--TAHAEILAIRAAAET   70 (152)
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCCEEEEEEcCCCCEEEEecCcccc------------CCCc--cccHHHHHHHHHHHh
Confidence            467899999999999998854 7999999997799999999998754            4577  999999999986   


Q ss_pred             -CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 -NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 -~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                       +.+.+.++|||+|+|||+||++||+|+||+||||+.++++.
T Consensus        71 ~~~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~  112 (152)
T COG0590          71 LGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKT  112 (152)
T ss_pred             hCCCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCc
Confidence             45789999999999999999999999999999999888763

>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3

Probab=99.95  E-value=6.4e-28  Score=175.14  Aligned_cols=98  Identities=49%  Similarity=0.781  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHhhC-CCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--
Q psy6804          89 LEWHEYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--  165 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s-~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--  165 (207)
                      ++||+.||++|+++|++| ..++.+|||+||+++|++|+.|+|....+            .++  ..|||++||.++.  
T Consensus         1 m~~~~~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i~~g~n~~~~~------------~~~--~~HAE~~Ai~~~~~~   66 (102)
T PF00383_consen    1 MEWDEEFMRIAIELAKRSRPCGNFPVGAVIVDPDGKIIATGYNGEPPG------------KNP--TIHAEMNAIRKAARN   66 (102)
T ss_dssp             -CHHHHHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEEEEEESBHHST------------TGG--TB-HHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhccccCCCCEEEEEEeccCccEEEEeeeeeee------------ccc--cccchhhhhhhhhhh
Confidence            368999999999999999 66799999999988999999999998643            224  8999999999862  


Q ss_pred             -CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEe
Q psy6804         166 -SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC  200 (207)
Q Consensus       166 -~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~  200 (207)
                       ...+.|++||+|+|||.||+++|+++||+||||++
T Consensus        67 ~~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~  102 (102)
T PF00383_consen   67 GGSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT  102 (102)
T ss_dssp             TSSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred             ccccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence             33568999999999999999999999999999985

5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....

>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases

Probab=99.95  E-value=1.4e-27  Score=175.90  Aligned_cols=95  Identities=35%  Similarity=0.516  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----CCCCCC
Q psy6804          96 MASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----NSADTK  170 (207)
Q Consensus        96 m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~~~~~~  170 (207)
                      |++|+++|+++.. ++.||||+||+++|+||+.|+|+..+.            .|+  +.|||++||.++    +...+.
T Consensus         1 m~~al~~a~~~~~~~~~~vgaviv~~~~~ii~~g~n~~~~~------------~~~--~~HAE~~ai~~~~~~~~~~~~~   66 (109)
T cd01285           1 MRLAIELARKALAEGEVPFGAVIVDDDGKVIARGHNRVEQD------------GDP--TAHAEIVAIRNAARRLGSYLLS   66 (109)
T ss_pred             CHHHHHHHHHHHHcCCCcEEEEEEeCCCEEEEEEeCCCCCC------------CCC--cccHHHHHHHHHHHHhCCCccC
Confidence            6789999998865 489999999988899999999998642            345  899999999987    334689


Q ss_pred             CcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         171 RCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       171 ~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      |++||+|+|||+||+++|+|+||++|||+.++++
T Consensus        67 ~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~  100 (109)
T cd01285          67 GCTLYTTLEPCPMCAGALLWARIKRVVYGASDPK  100 (109)
T ss_pred             CeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCc
Confidence            9999999999999999999999999999998875

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei

>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase

Probab=99.95  E-value=1.9e-27  Score=176.42  Aligned_cols=93  Identities=34%  Similarity=0.555  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhC--C-CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCc
Q psy6804          96 MASAFLVAKRS--K-DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRC  172 (207)
Q Consensus        96 m~~A~~~a~~s--~-~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~  172 (207)
                      |++|+++|+++  . .++.|||||||+.||+||+.|+|+..+                  +.|||++||+++....++|+
T Consensus         1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~------------------~~HAE~~ai~~a~~~~l~g~   62 (115)
T cd01284           1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAG------------------GPHAEVNALASAGEKLARGA   62 (115)
T ss_pred             CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCC------------------cccHHHHHHHHHhhcCCCCe
Confidence            68899999998  4 468999999998789999999999752                  89999999999855588999


Q ss_pred             EEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCCC
Q psy6804         173 KLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMSY  206 (207)
Q Consensus       173 ~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~~  206 (207)
                      +||+|+|||      +||+++|+|+||+||||+.++++.+
T Consensus        63 tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~  102 (115)
T cd01284          63 TLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPL  102 (115)
T ss_pred             EEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcc
Confidence            999999999      8999999999999999999888743

Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.

>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region

Probab=99.92  E-value=3.9e-25  Score=159.31  Aligned_cols=92  Identities=39%  Similarity=0.553  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhC--CCCCCceEEEEEcC-CCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC-CCCCCC
Q psy6804          96 MASAFLVAKRS--KDPVTRVGAVIVNE-DNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN-SADTKR  171 (207)
Q Consensus        96 m~~A~~~a~~s--~~~~~~vGaviv~~-~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~-~~~~~~  171 (207)
                      |++|+++|+++  ..++.||||+||+. +|++++.|+|.....            .++  +.|||++||+++. ...+++
T Consensus         1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~------------~~~--~~HAE~~ai~~a~~~~~~~~   66 (96)
T cd00786           1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAA------------YSM--CNHAERTALFNAGSEGDTKG   66 (96)
T ss_pred             CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCC------------CCC--eeCHHHHHHHHHHHcCCCCc
Confidence            67899999987  34689999999975 699999999987542            345  8999999999872 223799


Q ss_pred             cEEEEcccChHHHHHHHHHhCCCEEEEEec
Q psy6804         172 CKLYTSLFPCNECAKVIIQSGIKEVIYMCD  201 (207)
Q Consensus       172 ~~ly~T~ePC~~C~~ai~~agi~~vvy~~~  201 (207)
                      ++||+|+|||.||+++|+|+||++|||+.+
T Consensus        67 ~tly~tlePC~mC~~ai~~~gi~~Vv~~~~   96 (96)
T cd00786          67 QMLYVALSPCGACAQLIIELGIKDVIVVLT   96 (96)
T ss_pred             eEEEEECCChHHHHHHHHHhCCCCEEEeeC
Confidence            999999999999999999999999999863

The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.

>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]

Probab=99.92  E-value=1e-24  Score=164.63  Aligned_cols=97  Identities=31%  Similarity=0.518  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC
Q psy6804          89 LEWHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN  165 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~  165 (207)
                      ...|++||++|+++|++..   .|+++|||||| ++|+||+.|+.....                  ..|||+.||..+ 
T Consensus         3 ~~~~~~~M~~Al~lA~k~~g~T~pNP~VG~VIV-~~~~Ivg~G~h~~aG------------------~pHAEv~Al~~a-   62 (146)
T COG0117           3 SELDERYMERALELAEKGQGTTSPNPSVGCVIV-KDGEIVGEGYHEKAG------------------GPHAEVCALRMA-   62 (146)
T ss_pred             chHHHHHHHHHHHHHHhcCCcCCCCCceeEEEE-ECCEEEeeeecCCCC------------------CCcHHHHHHHHc-
Confidence            4569999999999999954   46899999999 688999999998754                  689999999998 


Q ss_pred             CCCCCCcEEEEcccChHH------HHHHHHHhCCCEEEEEecCCCC
Q psy6804         166 SADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~------C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +...+|+|+|||+|||..      |+.+|+.+||+|||++..++|-
T Consensus        63 g~~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp  108 (146)
T COG0117          63 GEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNP  108 (146)
T ss_pred             CcccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCc
Confidence            889999999999999987      9999999999999999999884

>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase

Probab=99.92  E-value=1e-24  Score=191.46  Aligned_cols=96  Identities=27%  Similarity=0.450  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC
Q psy6804          89 LEWHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN  165 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~  165 (207)
                      ++||++||++|+++|+++.   +++++|||||| ++|+||+.|+|....                  ..|||++||.++ 
T Consensus        29 ~~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV-~~g~Ii~~g~n~~~g------------------~~HAEi~Ai~~a-   88 (380)
T PLN02807         29 GDDDSFYMRRCVELARKAIGCTSPNPMVGCVIV-KDGRIVGEGFHPKAG------------------QPHAEVFALRDA-   88 (380)
T ss_pred             CchHHHHHHHHHHHHHhhcccCCCCCCEEEEEE-ECCEEEEEEeCCCCC------------------CcCHHHHHHHHh-
Confidence            4789999999999999984   35678999999 689999999998643                  589999999998 


Q ss_pred             CCCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804         166 SADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      +..+.|+|||||+|||      +||+++|+++||+||||+..+++
T Consensus        89 ~~~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~  133 (380)
T PLN02807         89 GDLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPN  133 (380)
T ss_pred             hhhcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCC
Confidence            4467899999999999      89999999999999999998776

>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional

Probab=99.91  E-value=3e-24  Score=188.44  Aligned_cols=94  Identities=33%  Similarity=0.591  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCC
Q psy6804          92 HEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSAD  168 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~  168 (207)
                      |++||++|+++|+++.   +++.||||||| ++|+||++|+|....                  ..|||++||++++ ..
T Consensus         3 d~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~g------------------~~HAE~~ai~~a~-~~   62 (367)
T PRK10786          3 DEFYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRAG------------------EPHAEVHALRMAG-EK   62 (367)
T ss_pred             HHHHHHHHHHHHHhcCcCCCCCCCEEEEEE-eCCEEEEEEeCCCCC------------------CCCHHHHHHHHHh-hh
Confidence            6789999999999984   46899999999 689999999998642                  5899999999984 46


Q ss_pred             CCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         169 TKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       169 ~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      ++|+|||||+|||      +||+.+|+++||+||||+.++++.
T Consensus        63 ~~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~  105 (367)
T PRK10786         63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNP  105 (367)
T ss_pred             cCCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCc
Confidence            7899999999999      899999999999999999888763

>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD

Probab=99.89  E-value=2.5e-23  Score=181.37  Aligned_cols=89  Identities=35%  Similarity=0.550  Sum_probs=79.9

Q ss_pred             HHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCc
Q psy6804          96 MASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRC  172 (207)
Q Consensus        96 m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~  172 (207)
                      |++|+++|+++.   +++.|||||||+ ||+||++|+|+...                  +.|||++||+++ ...++|+
T Consensus         1 m~~a~~~a~~~~~~~~~~~~vGaviv~-~~~ii~~g~n~~~~------------------~~HAE~~ai~~a-~~~~~g~   60 (344)
T TIGR00326         1 MNRALDLAKKGQGTTHPNPLVGCVIVK-NGEIVGEGAHQKAG------------------EPHAEVHALRQA-GENAKGA   60 (344)
T ss_pred             CHHHHHHHHhcCCCCCCCCCEEEEEEe-CCEEEEEeeCCCCC------------------CCCHHHHHHHHh-ccccCCc
Confidence            789999999985   357899999995 99999999998643                  799999999998 4467999


Q ss_pred             EEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804         173 KLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       173 ~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      |||||+|||      +||+++|+++||+||||+..+++
T Consensus        61 tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~   98 (344)
T TIGR00326        61 TAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPN   98 (344)
T ss_pred             EEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCC
Confidence            999999999      79999999999999999987765

This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.

>KOG1018|consensus

Probab=99.89  E-value=3.6e-23  Score=162.38  Aligned_cols=103  Identities=32%  Similarity=0.457  Sum_probs=90.5

Q ss_pred             chhHHHHHHHHHHHHHhhCCC-C-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHc--
Q psy6804          88 VLEWHEYFMASAFLVAKRSKD-P-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILN--  163 (207)
Q Consensus        88 ~~~~~~~~m~~A~~~a~~s~~-~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~--  163 (207)
                      ..++|..||..|+++|.++.+ + +.|||||+|+.||+|+++|+|.+..            .+|+  +.|||+.||..  
T Consensus         7 ~~~~~~~~m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~------------~~d~--t~HaE~~~I~~~~   72 (169)
T KOG1018|consen    7 LSDHDIAFMVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNE------------KKDP--TAHAEVIAIREEE   72 (169)
T ss_pred             cccccHHHHHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecc------------cCCc--chhhHHHHHhhHH
Confidence            457899999999999999976 5 7999999996699999999999743            4566  99999999997  


Q ss_pred             --c---CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         164 --K---NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       164 --~---~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                        .   ....+++++||||.|||+||++||.|+||++|||+...++
T Consensus        73 ~~~~~~~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~  118 (169)
T KOG1018|consen   73 VMCKSLRTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNER  118 (169)
T ss_pred             HHhhhcCceeccCCEEEEEecccHHHHHHHHHcCCCEEEEeccccc
Confidence              1   4477899999999999999999999999999999976543

>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain

Probab=99.69  E-value=2.3e-16  Score=116.48  Aligned_cols=93  Identities=22%  Similarity=0.221  Sum_probs=75.6

Q ss_pred             HHHHHHhhCCC--CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCCCCCCcE
Q psy6804          98 SAFLVAKRSKD--PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSADTKRCK  173 (207)
Q Consensus        98 ~A~~~a~~s~~--~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~~~~~~~  173 (207)
                      .|++.++++..  .+.||||+|++++|+|+ +|+|.....            .++  +.|||+.||.++  .+......+
T Consensus         3 ~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~------------~~~--~~hAE~~ai~~~~~~~~~~~~~~   67 (112)
T cd01283           3 AALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENAS------------YGL--TLCAERTAIGKAVSEGLRRYLVT   67 (112)
T ss_pred             HHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCC------------CCC--CcCHHHHHHHHHHHcCCCceEEE
Confidence            46666666643  48999999998889998 899976542            234  899999999986  223356899


Q ss_pred             EEEc-----ccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         174 LYTS-----LFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       174 ly~T-----~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +|+|     .+||.||+++|.+.++++|+|..+.+++
T Consensus        68 i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~~  104 (112)
T cd01283          68 WAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPKG  104 (112)
T ss_pred             EEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            9999     9999999999999999999999877764

These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.

>TIGR02571 ComEB ComE operon protein 2

Probab=99.67  E-value=5.5e-17  Score=125.74  Aligned_cols=66  Identities=35%  Similarity=0.594  Sum_probs=56.9

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +|||+++  .+..+.|+|||||+|||+||+++|+++||++|||+.++++..    .+.++|+++||++....
T Consensus        72 ~nAI~~a~~~~~~l~g~tlYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~----~~~~~l~~~gi~v~~~~  139 (151)
T TIGR02571        72 MNALLQCAKFGVSTEGAEIYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHP----YAIELFEQAGVELKKVP  139 (151)
T ss_pred             HHHHHHHHhcCCCcCCcEEEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcH----HHHHHHHHCCCEEEEeC
Confidence            4888874  345789999999999999999999999999999998775542    47899999999999863

This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.

>PHA02588 cd deoxycytidylate deaminase; Provisional

Probab=99.66  E-value=1e-16  Score=126.41  Aligned_cols=66  Identities=27%  Similarity=0.473  Sum_probs=56.4

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeee
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSE   69 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~   69 (207)
                      +|||+++  .+.++.|+|||||+|||+||+++|+++||++|||+.+++...   ..+.++|+++||++...
T Consensus        86 ~nAi~~a~~~~~~~~g~tLYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~---~~~~~~L~~~Gi~v~~~  153 (168)
T PHA02588         86 LNAILFAARNGISIEGATMYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNG---PGWDDILRKSGIEVIQI  153 (168)
T ss_pred             HHHHHHHhhcCCCCCCcEEEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCc---HHHHHHHHHCCCEEEEe
Confidence            4889886  356789999999999999999999999999999998755432   23789999999999875

>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]

Probab=99.63  E-value=2.8e-16  Score=121.76  Aligned_cols=69  Identities=36%  Similarity=0.555  Sum_probs=61.3

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +|||+++  .+..++|+|||||++||.+|+++|+++||++|||..+|+++... ..+..+|+++||.+.++.
T Consensus        82 ~NAil~aa~~g~~~~~atlYvt~~PC~~Cak~Ii~aGIk~Vvy~~~Y~~~~~~-~~s~~l~~~agv~~~~~~  152 (164)
T COG2131          82 QNAILQAARHGVGLEGATLYVTHFPCSNCAKLIIQAGIKEVVYAEPYPTETVA-PYSQELLEEAGVKVRQFP  152 (164)
T ss_pred             HHHHHHHHhcCCCCCCcEEEEEecccHHHHHHHHHhCceEEEeecCCCcchhh-HHHHHHHHhCCceEEecc
Confidence            6999994  67788999999999999999999999999999999999987522 247899999999999975

>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase

Probab=99.55  E-value=5e-15  Score=109.88  Aligned_cols=62  Identities=27%  Similarity=0.422  Sum_probs=52.2

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccce
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAK   63 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~g   63 (207)
                      ++||.++...++.|+|||+|+|||      +||+++|+|+||++|||+..+++...... +.++|+++|
T Consensus        48 ~~ai~~a~~~~l~g~tly~TlEPC~~~~~~~mC~~ai~~~gi~~Vv~g~~~~~~~~~~~-g~~~l~~~g  115 (115)
T cd01284          48 VNALASAGEKLARGATLYVTLEPCSHHGKTPPCVDAIIEAGIKRVVVGVRDPNPLVAGK-GAERLRAAG  115 (115)
T ss_pred             HHHHHHHhhcCCCCeEEEEeCCCCCCCCCchHHHHHHHHHCcCEEEEEecCCCcccccH-HHHHHHHCc
Confidence            367888654489999999999999      89999999999999999999987655444 778888765

Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.

>PRK10860 tRNA-specific adenosine deaminase; Provisional

Probab=99.54  E-value=6.8e-15  Score=116.38  Aligned_cols=63  Identities=19%  Similarity=0.318  Sum_probs=50.9

Q ss_pred             Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcccee
Q psy6804           1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKV   64 (207)
Q Consensus         1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI   64 (207)
                      ++||+++    ...++.|+|||||+|||+||+++|+++||++|||+..+++....+. +..+|+..++
T Consensus        65 i~Ai~~a~~~~~~~~l~g~tlY~TlEPC~MC~~aii~agI~rVvyg~~d~~~g~~g~-~~~~l~~~~~  131 (172)
T PRK10860         65 IMALRQGGLVLQNYRLLDATLYVTLEPCVMCAGAMVHSRIGRLVFGARDAKTGAAGS-LMDVLHHPGM  131 (172)
T ss_pred             HHHHHHHHHhcCCCCcCCcEEEeeCCCcHHHHHHHHHhCCCEEEEeecCCCCCCCCc-HHHHhhcccC
Confidence            4677764    3456789999999999999999999999999999999887654433 4667777765

>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]

Probab=99.54  E-value=5.5e-15  Score=111.89  Aligned_cols=67  Identities=19%  Similarity=0.284  Sum_probs=60.8

Q ss_pred             hhccccCCCCCCCcEEEEcCCCcHH------HHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           2 NAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         2 nAi~~~~~~~~~g~~lYvT~~PC~~------Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +||.++ +...+|+|+|||+|||++      |+.+|+.+||++||++..||++..++. |..+|+++||++..-.
T Consensus        57 ~Al~~a-g~~a~Gat~yVTLEPCsH~GrTPPC~~ali~agi~rVvva~~DPnp~Vag~-G~~~L~~aGi~V~~gi  129 (146)
T COG0117          57 CALRMA-GEAARGATAYVTLEPCSHYGRTPPCADALIKAGVARVVVAMLDPNPLVAGG-GLARLRAAGIEVEVGI  129 (146)
T ss_pred             HHHHHc-CcccCCCEEEEEecCcccCCCCcchHHHHHHhCCCEEEEEecCCCccccCc-hHHHHHHcCCeEEEeh
Confidence            677777 678999999999999966      999999999999999999999888887 8999999999998753

>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=8.1e-15  Score=113.88  Aligned_cols=59  Identities=29%  Similarity=0.427  Sum_probs=48.0

Q ss_pred             hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc
Q psy6804           2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA   61 (207)
Q Consensus         2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~   61 (207)
                      +||+++    +...+.|||||||+|||+||+++|+++||++|||+.++++....+. ...++.+
T Consensus        62 ~air~a~~~~~~~~l~~~tlyvT~EPC~MCagAi~~ari~rvvyga~~~~~ga~g~-~~~i~~~  124 (152)
T COG0590          62 LAIRAAAETLGNYRLKDCTLYVTLEPCPMCAGAIIWARIDRVVYGASDPKTGAIGS-LLDILKD  124 (152)
T ss_pred             HHHHHHHHhhCCCCcCCcEEEEecCCHHHHHHHHHHhCCCeEEEecCCCCcCccCc-ccccccC
Confidence            566663    3457999999999999999999999999999999999887764433 4556666

>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain

Probab=99.44  E-value=1e-13  Score=105.23  Aligned_cols=48  Identities=46%  Similarity=0.796  Sum_probs=42.2

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCC
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ   48 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~   48 (207)
                      +|||+++  .+..+.|+|||||+|||+||+++|+++||++|||+.+++..
T Consensus        73 ~~Ai~~a~~~~~~~~~~tLyvT~ePC~~C~~ai~~~gI~~Vvy~~~~~~~  122 (131)
T cd01286          73 QNAILQAARHGVSLEGATLYVTLFPCIECAKLIIQAGIKKVVYAEPYDDD  122 (131)
T ss_pred             HHHHHHHhHcCCCcCCeEEEEecCcHHHHHHHHHHhCCCEEEEeeccCcc
Confidence            4788874  24678999999999999999999999999999999987654

Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.

>KOG3127|consensus

Probab=99.41  E-value=1.5e-13  Score=110.21  Aligned_cols=74  Identities=49%  Similarity=0.657  Sum_probs=66.7

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeeccccc
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMN   74 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~   74 (207)
                      +|||+++.+..+.++++|||+.||..|+++|+++||++|||...+.-+.....++.++|+.+|+++.+++++..
T Consensus       139 ~NAi~~~~~~~~~~~~lYvtl~PC~~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~i~~~~  212 (230)
T KOG3127|consen  139 ENAILNKGRERVGGCSLYVTLCPCNECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQFIPPES  212 (230)
T ss_pred             HHHHHHhCccccCCceEEEeecchHHHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcceEEeccCCc
Confidence            59999998999999999999999999999999999999999999875656667899999999999999876543

>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase

Probab=99.40  E-value=2.5e-13  Score=119.71  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=57.6

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      ++||.++. ..+.|+|||||+|||      +||+++|+++||++|||+..++++...+. +.++|+++||++..
T Consensus        82 i~Ai~~a~-~~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~-g~~~l~~~gi~V~~  153 (380)
T PLN02807         82 VFALRDAG-DLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASK-GIERLRDAGIEVTV  153 (380)
T ss_pred             HHHHHHhh-hhcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccch-HHHHHHhCCCEEEe
Confidence            47888874 467899999999999      89999999999999999999888766554 78899999999865

>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases

Probab=99.40  E-value=2.8e-13  Score=99.59  Aligned_cols=48  Identities=38%  Similarity=0.571  Sum_probs=40.9

Q ss_pred             Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCC
Q psy6804           1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ   48 (207)
Q Consensus         1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~   48 (207)
                      ++||.++    ....+.|++||+|+|||+||+++|+++||++|||+.++++.
T Consensus        50 ~~ai~~~~~~~~~~~~~~~~ly~t~EPC~mC~~ai~~~gi~~Vvy~~~~~~~  101 (109)
T cd01285          50 IVAIRNAARRLGSYLLSGCTLYTTLEPCPMCAGALLWARIKRVVYGASDPKL  101 (109)
T ss_pred             HHHHHHHHHHhCCCccCCeEEEEeCCChHHHHHHHHHHCCCEEEEEecCCcc
Confidence            3667764    22368999999999999999999999999999999988764

These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei

>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional

Probab=99.38  E-value=3.5e-13  Score=118.57  Aligned_cols=66  Identities=18%  Similarity=0.321  Sum_probs=57.0

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      +|||.++. ..++|+|||||+|||      +||+++|+++||++|||+..+++....+. +..+|+++||++..
T Consensus        53 ~~ai~~a~-~~~~g~tlyvTlEPC~~~g~t~mC~~aii~agI~rVv~~~~dp~~~~~g~-~~~~l~~~gi~v~~  124 (367)
T PRK10786         53 VHALRMAG-EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGR-GLYRLQQAGIDVSH  124 (367)
T ss_pred             HHHHHHHh-hhcCCCEEEEecCCccCCCCChHHHHHHHHhCCCEEEEecCCCCcccCch-HHHHHhcCCcEEEc
Confidence            47888874 367999999999999      89999999999999999999988765543 67889999999875

>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD

Probab=99.37  E-value=5.6e-13  Score=116.42  Aligned_cols=66  Identities=24%  Similarity=0.387  Sum_probs=56.7

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      ++||+++. ..++|+|||||+|||      +||+++|+++||++|||+..+++....+. +..+|++.||++..
T Consensus        47 ~~ai~~a~-~~~~g~tlyvtlEPC~~~g~~~~C~~ai~~~gi~~vv~~~~d~~~~~~~~-~~~~l~~~gi~v~~  118 (344)
T TIGR00326        47 VHALRQAG-ENAKGATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGR-GAERLKQAGIEVTF  118 (344)
T ss_pred             HHHHHHhc-cccCCcEEEEeCCCCCCCCCCcHHHHHHHHcCCCEEEEEeCCCCccccch-HHHHHhcCCcEEEe
Confidence            47888874 367999999999999      79999999999999999999887765543 67889999998865

This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.

>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region

Probab=99.30  E-value=1.5e-12  Score=93.63  Aligned_cols=44  Identities=43%  Similarity=0.738  Sum_probs=37.0

Q ss_pred             ChhccccC-CCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEecc
Q psy6804           1 MNAILNKN-SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD   44 (207)
Q Consensus         1 ~nAi~~~~-~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~   44 (207)
                      ++||.++. ...+++++||+|+|||.||+++|+++||++|||+.+
T Consensus        52 ~~ai~~a~~~~~~~~~tly~tlePC~mC~~ai~~~gi~~Vv~~~~   96 (96)
T cd00786          52 RTALFNAGSEGDTKGQMLYVALSPCGACAQLIIELGIKDVIVVLT   96 (96)
T ss_pred             HHHHHHHHHcCCCCceEEEEECCChHHHHHHHHHhCCCCEEEeeC
Confidence            36777742 224799999999999999999999999999999863

The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.

>PF14439 Bd3614-deam: Bd3614-like deaminase

Probab=99.29  E-value=1.6e-11  Score=89.28  Aligned_cols=80  Identities=25%  Similarity=0.377  Sum_probs=66.5

Q ss_pred             CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc-------------------------
Q psy6804         110 VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK-------------------------  164 (207)
Q Consensus       110 ~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~-------------------------  164 (207)
                      .+.|-|.||+++|.++..+.|.-.              +|.  ++|||+|.+...                         
T Consensus         7 DR~VvA~lv~~~G~l~daa~NtNa--------------~N~--~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~   70 (136)
T PF14439_consen    7 DRRVVAALVSPDGELVDAAVNTNA--------------DNK--MLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEE   70 (136)
T ss_pred             ccceeEEEECCCCcEEEeeeccCC--------------ccc--eeehhhhhhhHHHHhhcccCCCcccccccCCCcchhh
Confidence            577899999999999999999743              244  899999998742                         


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhCC-------CEEEEEecCCCC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSGI-------KEVIYMCDKQMS  205 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi-------~~vvy~~~~~~~  205 (207)
                      .+....|++||+|+.||.||+..+..++.       .+|||+..++.+
T Consensus        71 ~~~l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~  118 (136)
T PF14439_consen   71 RRPLPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDPGS  118 (136)
T ss_pred             cCcCCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCCCc
Confidence            23444699999999999999999999887       899999887754

>KOG2771|consensus

Probab=99.27  E-value=1.3e-11  Score=105.02  Aligned_cols=96  Identities=18%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCC-eEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          90 EWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDN-KIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g-~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      ..+.++|+.++.+|..+... +++|++|+++-+ .|++.|....-.             .+|  ..|+-|+++...    
T Consensus       165 ~~~~ri~e~~I~~a~~~~~~-~~~~a~I~~p~~~~Via~~~~~~~~-------------~~P--~eh~~mv~v~~v~rrq  228 (344)
T KOG2771|consen  165 GEIARIGELLIAMATDGHAS-RPVSAAIVDPVMDRVIAAGTGEVCA-------------YNP--IEHCVMVLVHFVARRQ  228 (344)
T ss_pred             HHHHHHHHHHHHHHhhhccc-cCccceecCCccceEEecCCCcccc-------------cCc--HHHHHHHHHHHHHHHH
Confidence            34568899999999988765 999999999865 455555554321             145  678887777521    


Q ss_pred             -C-------------------------------------CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEec
Q psy6804         165 -N-------------------------------------SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD  201 (207)
Q Consensus       165 -~-------------------------------------~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~  201 (207)
                       .                                     ++.+.|+++|+|+|||.||++|+++++|+||+|+..
T Consensus       229 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~MCsMALvHsRikRvfy~~~  303 (344)
T KOG2771|consen  229 EEGTWDLHPIPLLIFNAVSSPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCAMCSMALVHSRIKRVFYCKP  303 (344)
T ss_pred             hccccccccccccccccccchhhhhhchhccccccccccceeeecceEEEecChHHHHHHHHHHHhhhheeeccC
Confidence             1                                     256689999999999999999999999999999876

>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric

Probab=99.24  E-value=1e-10  Score=88.33  Aligned_cols=83  Identities=22%  Similarity=0.280  Sum_probs=66.6

Q ss_pred             HHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCCC
Q psy6804          95 FMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSADT  169 (207)
Q Consensus        95 ~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~~  169 (207)
                      +.+.|.++++++..|  +.||||+|++.||+|+. |.|....            ..++  +.|||+.||.++   +...+
T Consensus         3 l~~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~------------~~~~--s~~AE~~Ai~~a~~~g~~~i   67 (127)
T TIGR01354         3 LFKAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENA------------SYPL--TICAERSAIGKAISAGYRKF   67 (127)
T ss_pred             HHHHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeeccc------------CCCC--CcCHHHHHHHHHHHcCCCCe
Confidence            568899999999987  68999999999999986 9997643            2344  899999999986   33345


Q ss_pred             CCcEEEE----cccChHHHHHHHHHhC
Q psy6804         170 KRCKLYT----SLFPCNECAKVIIQSG  192 (207)
Q Consensus       170 ~~~~ly~----T~ePC~~C~~ai~~ag  192 (207)
                      ....++.    ...||.+|...|.+.+
T Consensus        68 ~~i~vv~~~~~~~sPCG~Crq~l~e~~   94 (127)
T TIGR01354        68 VAIAVADSADDPVSPCGACRQVLAEFA   94 (127)
T ss_pred             EEEEEEeCCCCCcCccHHHHHHHHHhC
Confidence            5555554    5689999999999987

This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.

>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3

Probab=99.20  E-value=4.5e-12  Score=91.61  Aligned_cols=42  Identities=45%  Similarity=0.826  Sum_probs=33.8

Q ss_pred             hhcccc--C-CCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEec
Q psy6804           2 NAILNK--N-SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC   43 (207)
Q Consensus         2 nAi~~~--~-~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~   43 (207)
                      |||.++  . +.++.|++||+|+|||.||+.+|+++||++|||+.
T Consensus        58 ~Ai~~~~~~~~~~~~~~~lyvt~ePC~~C~~ai~~~gi~~vvy~~  102 (102)
T PF00383_consen   58 NAIRKAARNGGSSLKGCTLYVTLEPCGMCAMAIVHAGIKRVVYGT  102 (102)
T ss_dssp             HHHHHHHHTTSSGETTEEEEEEE--BHHHHHHHHHHTSSEEEEEE
T ss_pred             hhhhhhhhhccccccCcccccCCCCHHHHHHHHHHHCcCeEEEeC
Confidence            566663  2 34578999999999999999999999999999973

5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....

>KOG1018|consensus

Probab=98.99  E-value=4.3e-10  Score=88.55  Aligned_cols=41  Identities=29%  Similarity=0.587  Sum_probs=37.0

Q ss_pred             CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCC
Q psy6804           8 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQ   48 (207)
Q Consensus         8 ~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~   48 (207)
                      ...+++++|+|||+|||+||+++|.+.||++|||+...+..
T Consensus        79 ~~~~ls~~tlyvt~ePc~mC~gal~~~gv~~vv~G~~ne~~  119 (169)
T KOG1018|consen   79 RTIDLSETTLYVTCEPCPMCAGALAQSGVKRVVFGASNERF  119 (169)
T ss_pred             CceeccCCEEEEEecccHHHHHHHHHcCCCEEEEecccccc
Confidence            34688999999999999999999999999999999986544

>PRK06848 hypothetical protein; Validated

Probab=98.98  E-value=8.8e-09  Score=78.80  Aligned_cols=94  Identities=16%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---C
Q psy6804          90 EWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---N  165 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~  165 (207)
                      +.++.+++.|.++.+.+..+ +++|||+|..++|+|+ +|.|-.....            ..  ++|||..||..+   +
T Consensus         5 ~~~~~L~~~A~~a~~~ay~ps~f~VgAa~l~~~G~i~-~G~NvEnas~------------~~--tiCAEr~Ai~~av~~g   69 (139)
T PRK06848          5 SEDYELIKAAEKVIEKRYRNDWHHVGAALRTKTGRIY-AAVHLEAYVG------------RI--TVCAEAIAIGKAISEG   69 (139)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcEEEEEEeCCCCEE-EEEEeecCCC------------Cc--ccCHHHHHHHHHHHcC
Confidence            34556899999999998876 7899999999999987 9999654211            12  799999999886   2


Q ss_pred             CCCCCCcEEEE------------cccChHHHHHHHHHhCCCEEEE
Q psy6804         166 SADTKRCKLYT------------SLFPCNECAKVIIQSGIKEVIY  198 (207)
Q Consensus       166 ~~~~~~~~ly~------------T~ePC~~C~~ai~~agi~~vvy  198 (207)
                      ...+....+..            ...||.+|.+.|.+.+-.-.|+
T Consensus        70 ~~~i~~i~~v~~~~~~~~~~~~~~~~PCG~CRQvl~E~~~~~~v~  114 (139)
T PRK06848         70 DHEIDTIVAVRHPKPHEDDREIWVVSPCGACRELISDYGKNTNVI  114 (139)
T ss_pred             CCceEEEEEEecCcccccccCCCccCCChhhHHHHHHhCCCCEEE
Confidence            22232222222            2469999999999986443333

>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]

Probab=98.94  E-value=1.2e-08  Score=77.13  Aligned_cols=95  Identities=23%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCC
Q psy6804          94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSAD  168 (207)
Q Consensus        94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~  168 (207)
                      ..+..|.+++..|..|  +++|||+|..++|+++ +|.|-....-            -.  ++|||..||.++   +...
T Consensus         7 ~l~~~a~~a~~~ay~PYS~F~VGAa~~t~~G~i~-tG~NiEnasy------------~~--t~CAErsAI~~ais~G~~~   71 (134)
T COG0295           7 ELFALAPEAAANAYAPYSKFKVGAALRTKDGRIY-TGANVENASY------------GL--TVCAERSAIFKAISEGKRK   71 (134)
T ss_pred             HHHHHHHHHHHhccCcccCCcEEEEEEeCCCCEE-EEEeeecccc------------cc--hhhHHHHHHHHHHHcCCCc
Confidence            4677788888888887  8999999999999876 9999754311            11  899999999986   3333


Q ss_pred             CCCcEEEEc----ccChHHHHHHHHHhC-CCEEEEEecCC
Q psy6804         169 TKRCKLYTS----LFPCNECAKVIIQSG-IKEVIYMCDKQ  203 (207)
Q Consensus       169 ~~~~~ly~T----~ePC~~C~~ai~~ag-i~~vvy~~~~~  203 (207)
                      +.-..+|..    ..||.+|.+.|.+.. =...+|..+..
T Consensus        72 ~~~v~v~~~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~~~~~  111 (134)
T COG0295          72 FDAVVVVADTGKPVSPCGACRQVLAEFCGDDTLIILLPKD  111 (134)
T ss_pred             EEEEEEEcCCCCCcCCcHHHHHHHHHhcCCCceEEEecCC
Confidence            333333333    679999999999965 44445554443

>PRK08298 cytidine deaminase; Validated

Probab=98.86  E-value=2.6e-08  Score=75.88  Aligned_cols=93  Identities=17%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCCCC
Q psy6804          92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSADT  169 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~~~  169 (207)
                      ++.+++.|.++.+++..|-.+|||+|...||+|+ +|.|-......            .  ++.||.+||..+  .+...
T Consensus         4 ~~~L~~~A~~a~~~aY~PYS~VgAAllt~dG~i~-tG~NvEnas~~------------~--t~CAEr~Ai~~av~~G~~~   68 (136)
T PRK08298          4 EQALYDVAKQLIEQRYPNGWGGAAAMRVEDGTIL-TSVAPEVINAS------------T--ELCMETGAICEAHKLQKRV   68 (136)
T ss_pred             HHHHHHHHHHHHHhccCCCCceeEEEEeCCCCEE-EEEeecCCCCC------------c--chhHHHHHHHHHHHCCCce
Confidence            4568999999999999884499999999999987 99996543211            1  789999999876  22221


Q ss_pred             CCcEE-EEc--------ccChHHHHHHHHHhCCCEEEEE
Q psy6804         170 KRCKL-YTS--------LFPCNECAKVIIQSGIKEVIYM  199 (207)
Q Consensus       170 ~~~~l-y~T--------~ePC~~C~~ai~~agi~~vvy~  199 (207)
                      -.... +..        ..||.+|.+.|.+.+-.-.|+.
T Consensus        69 ~~~i~v~~~~~~~~~~~~sPCG~CRQvl~Ef~~~~~v~~  107 (136)
T PRK08298         69 THSICVARENEHSELKVLSPCGVCQERLFYWGPDVMCAV  107 (136)
T ss_pred             EEEEEEEcCCCcCCCcccCCChhHHHHHHHhCCCCEEEE
Confidence            11111 211        3699999999999865444443

>PRK05578 cytidine deaminase; Validated

Probab=98.84  E-value=4.9e-08  Score=74.00  Aligned_cols=84  Identities=24%  Similarity=0.349  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCC
Q psy6804          94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSAD  168 (207)
Q Consensus        94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~  168 (207)
                      .+++.|.++.+++..|  +.+|||+|.+.+|+|. .|.|-....            ...  ++|||..||..+   +...
T Consensus         5 ~L~~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~------------~~~--~~CAE~~Ai~~av~~G~~~   69 (131)
T PRK05578          5 ELIEAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENAS------------YGL--TNCAERTAIFKAISEGGGR   69 (131)
T ss_pred             HHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCcc------------ccC--CcCHHHHHHHHHHHcCCCc
Confidence            4788999999999886  6899999999999987 999964321            122  799999999876   2223


Q ss_pred             CCCcEEEE----cccChHHHHHHHHHhC
Q psy6804         169 TKRCKLYT----SLFPCNECAKVIIQSG  192 (207)
Q Consensus       169 ~~~~~ly~----T~ePC~~C~~ai~~ag  192 (207)
                      +....+..    ...||.+|.+.|.+..
T Consensus        70 i~~i~vv~~~~~~~sPCG~CRQ~l~e~~   97 (131)
T PRK05578         70 LVAIACVGETGEPLSPCGRCRQVLAEFG   97 (131)
T ss_pred             eEEEEEEecCCCccCccHHHHHHHHHhC
Confidence            32222222    2579999999999875

>PRK09027 cytidine deaminase; Provisional

Probab=98.83  E-value=8.5e-08  Score=81.67  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCC-
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSA-  167 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~-  167 (207)
                      +.+.+.|++++++|..|  +.+||++|.+.||+|+ .|+|-...            ..++  ++.||..||..+  .+. 
T Consensus       190 ~~L~~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENA------------Aynp--slcaer~Al~~~v~~G~~  254 (295)
T PRK09027        190 DPLIQAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENA------------AFNP--SLPPLQGALNLLNLSGED  254 (295)
T ss_pred             HHHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcC------------CCCC--cccHHHHHHHHHHHcCCC
Confidence            45889999999999998  7999999999999987 99997543            2345  899999999876  333 


Q ss_pred             --CCCCcEEEEc----ccChHHHHHHHHHhCCCEEEE
Q psy6804         168 --DTKRCKLYTS----LFPCNECAKVIIQSGIKEVIY  198 (207)
Q Consensus       168 --~~~~~~ly~T----~ePC~~C~~ai~~agi~~vvy  198 (207)
                        .++...|...    ..||.+|...|...+-..+-|
T Consensus       255 ~~~i~~i~lv~~~~~~ispcg~cRq~L~ef~~~~~~~  291 (295)
T PRK09027        255 FSDIQRAVLVEKADAKLSQWDATQATLKALGCHELER  291 (295)
T ss_pred             ccCEEEEEEEeCCCCCcCchHHHHHHHHHhCCCCcEE
Confidence              3455556554    359999999999876555544

>PRK12411 cytidine deaminase; Provisional

Probab=98.79  E-value=9.2e-08  Score=72.59  Aligned_cols=84  Identities=20%  Similarity=0.325  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCCC
Q psy6804          94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSAD  168 (207)
Q Consensus        94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~~  168 (207)
                      .+...|.++++++..|  +.+|||++..++|+|+ +|.|-....            ...  ++|||..||..+   +...
T Consensus         5 ~L~~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s------------~~~--s~CAE~~Ai~~av~~g~~~   69 (132)
T PRK12411          5 QLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENAS------------YGL--CNCAERTALFKAVSEGDKE   69 (132)
T ss_pred             HHHHHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCC------------CCc--CcCHHHHHHHHHHHCCCCc
Confidence            5788999999999887  6899999999999987 999954321            122  789999999876   2223


Q ss_pred             CCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804         169 TKRCKLYTS----LFPCNECAKVIIQSG  192 (207)
Q Consensus       169 ~~~~~ly~T----~ePC~~C~~ai~~ag  192 (207)
                      ++...+...    ..||.+|.+.|.+..
T Consensus        70 i~~i~v~~~~~~~~sPCG~CRQ~l~Ef~   97 (132)
T PRK12411         70 FVAIAIVADTKRPVPPCGACRQVMVELC   97 (132)
T ss_pred             eEEEEEEeCCCCCcCCchhHHHHHHHhC
Confidence            322222221    369999999999963

>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric

Probab=98.65  E-value=2.3e-07  Score=78.55  Aligned_cols=86  Identities=22%  Similarity=0.198  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC-
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS-  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~-  166 (207)
                      ++.++..|.++++++..|  +++|||++..++|+|+ .|.|-...+...          ..  ++|||..||.++  .+ 
T Consensus        22 ~~~L~~~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~----------~~--tiCAEr~Ai~~Av~~Ge   88 (283)
T TIGR01355        22 PKLLPKLIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPL----------HH--SIHAEQFLISHLALNNE   88 (283)
T ss_pred             HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCC----------Cc--cccHHHHHHHHHHHcCC
Confidence            456899999999999987  8999999999999987 999964222110          11  799999999886  22 


Q ss_pred             CCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804         167 ADTKRCKLYTSLFPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC~~C~~ai~~ag  192 (207)
                      ..+  ..+.++..||.+|.+.|.+..
T Consensus        89 ~~i--~~Iav~~~PCG~CRQ~l~Ef~  112 (283)
T TIGR01355        89 RGL--NDLAVSYAPCGHCRQFLNEIR  112 (283)
T ss_pred             Cce--EEEEEEeCCcchhHHHHHHhc
Confidence            233  446667889999999999973

This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.

>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric

Probab=98.58  E-value=8.5e-07  Score=75.14  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--C--C
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--N--S  166 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~--~  166 (207)
                      +.+++.|.+++++|..|  +.+|||+|++.||+|+ .|+|-....            .++  +++||..||..+  .  +
T Consensus       175 ~~l~~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAa------------y~~--slcaer~Ai~~~v~~g~g  239 (283)
T TIGR01355       175 SHLKQQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAA------------FNP--SLGPVQAALVDFMANGGG  239 (283)
T ss_pred             HHHHHHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCC------------CCC--cccHHHHHHHHHHHhCCC
Confidence            34889999999999998  7999999999999987 999976432            234  899999999875  1  3


Q ss_pred             CCCCC---cEEEEc----ccChHHHHHHHHHhCCC
Q psy6804         167 ADTKR---CKLYTS----LFPCNECAKVIIQSGIK  194 (207)
Q Consensus       167 ~~~~~---~~ly~T----~ePC~~C~~ai~~agi~  194 (207)
                      ..+.+   .+|--+    ..||.+|...|...+..
T Consensus       240 ~~~~~i~~aVl~e~~~~~vs~~~~~r~~l~~~~p~  274 (283)
T TIGR01355       240 KGFEDIVRAVLVEKADAKVSHEATARTLLETIAPS  274 (283)
T ss_pred             CChhheeEEEEEecCCCccChHHHHHHHHHHhCCC
Confidence            44433   333222    46999999999987655

This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.

>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional

Probab=98.58  E-value=7.6e-08  Score=84.53  Aligned_cols=57  Identities=16%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             CCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccc--hhhhhhhccceeeeee
Q psy6804          11 DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPAT--IASKRMFDAAKVHYWS   68 (207)
Q Consensus        11 ~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~--~~~~~~l~~~gI~v~~   68 (207)
                      .++|.+||+|.+||.+|+.+|+.+||++||++. |+++...+  ..+.++|+++||+|..
T Consensus        42 gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d~~G~~~~~~~~~~L~~aGi~V~~  100 (360)
T PRK14719         42 KINANFITVSNTPVFQIADDLIAENISEVILLT-DFDRAGRVYAKNIMEEFQSRGIKVNN  100 (360)
T ss_pred             CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCCCCCCccchHHHHHHHHCCCEEEe
Confidence            457999999999999999999999999999999 77653222  1137899999999954

>PLN02402 cytidine deaminase

Probab=98.49  E-value=1.2e-06  Score=74.60  Aligned_cols=85  Identities=22%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCC-CCChHHHHHHHcc---C
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL-DMCHAEMNAILNK---N  165 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~-~~~HAE~~Ai~~~---~  165 (207)
                      ++-.+.++..+.+.+..|  +++|||++...+|+|. .|.|-...+             .++ -++|||..||.++   +
T Consensus        25 ~~ll~~l~~~A~~~AyaPYS~F~VGAa~l~~~G~i~-~GvNVEnas-------------y~l~~tiCAEr~Ai~~av~~G   90 (303)
T PLN02402         25 LQLLPSLVKSAQSLARPPISKYHVGAVGLGSSGRIF-LGVNLEFPG-------------LPLHHSVHAEQFLITNLTLNA   90 (303)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCeeeEEEEeCCCCEE-EEEeeecCC-------------CCCCCcccHHHHHHHHHHHcC
Confidence            455677788888888887  7899999999999986 999964332             111 1689999999876   2


Q ss_pred             CCCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804         166 SADTKRCKLYTSLFPCNECAKVIIQSG  192 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~C~~ai~~ag  192 (207)
                      ...+  -.+.++..||.+|.+.|.+..
T Consensus        91 ~~~i--~~iaV~~sPCG~CRQ~l~Ef~  115 (303)
T PLN02402         91 EPHL--KYVAVSAAPCGHCRQFFQEIR  115 (303)
T ss_pred             CCce--EEEEEEeCCCcccHHHHHHhc
Confidence            2333  346677789999999999873

>KOG0833|consensus

Probab=98.43  E-value=4.5e-06  Score=65.22  Aligned_cols=93  Identities=19%  Similarity=0.156  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---C
Q psy6804          91 WHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---N  165 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~  165 (207)
                      ..+.....+.++-+.+.+|  +++|||+++.++|+|+ .|.|-....              ...++|||.-||.++   +
T Consensus        20 ~~~~L~~l~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~--------------~~~sIcAEr~ai~~l~l~g   84 (173)
T KOG0833|consen   20 DPQELLKLARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENAS--------------YHHSICAERFAIANLALNG   84 (173)
T ss_pred             CHHHHHHHHHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccC--------------CCCcccHHHHHHHHHHHcC
Confidence            3556777777777777787  7999999999899986 999965321              111899999999986   2


Q ss_pred             CCCCCCcEEEEc------ccChHHHHHHHHHhCCCEEEEE
Q psy6804         166 SADTKRCKLYTS------LFPCNECAKVIIQSGIKEVIYM  199 (207)
Q Consensus       166 ~~~~~~~~ly~T------~ePC~~C~~ai~~agi~~vvy~  199 (207)
                      ...+.-+ ..++      ..||..|.+.|.+.+-...++.
T Consensus        85 ~~k~~~~-aV~~~~~~~f~tPCG~CRQfl~Ef~~~~~l~~  123 (173)
T KOG0833|consen   85 ERKFRAI-AVVAYEDGDFTTPCGVCRQFLREFGNASLLLE  123 (173)
T ss_pred             cccceEE-EEEecCCCCcCCCcHHHHHHHHHHhhcceeee
Confidence            2222221 2222      6799999999999988754444

>PLN02182 cytidine deaminase

Probab=98.33  E-value=5.2e-06  Score=71.66  Aligned_cols=87  Identities=21%  Similarity=0.180  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCC-CCChHHHHHHHcc---C
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL-DMCHAEMNAILNK---N  165 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~-~~~HAE~~Ai~~~---~  165 (207)
                      ++.+..++..++..+..|  +++|||++...+|+|. .|.|-...+             -++ .++|||..||..+   +
T Consensus        45 ~~ll~~Ll~~A~~~AyaPyS~F~VGAa~l~~sG~iy-~GvNVEnas-------------~pl~~tICAEr~AI~~A~~~G  110 (339)
T PLN02182         45 PIRLPNLIRKAMCLARAPISKYKVGAVGRASSGRVY-LGVNVDFPG-------------LPLHHSIHAEQFLVTNLALNS  110 (339)
T ss_pred             HHHHHHHHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeecCC-------------CccCCccCHHHHHHHHHHHCC
Confidence            445555666667777777  7999999999999986 999965432             111 1799999999986   2


Q ss_pred             CCCCCCcEEEEc------ccChHHHHHHHHHhC
Q psy6804         166 SADTKRCKLYTS------LFPCNECAKVIIQSG  192 (207)
Q Consensus       166 ~~~~~~~~ly~T------~ePC~~C~~ai~~ag  192 (207)
                      ...+....+.+.      ..||.+|.+.|.+..
T Consensus       111 e~~i~~iaVaV~~~~~~~~sPCG~CRQfm~Ef~  143 (339)
T PLN02182        111 EKDLCELAVAISTDGKEFGTPCGHCLQFLMEMS  143 (339)
T ss_pred             CCceEEEEEEEecCCCCCcCCCchhHHHHHHhC
Confidence            222322223322      679999999999985

>PRK09027 cytidine deaminase; Provisional

Probab=98.24  E-value=8.1e-06  Score=69.67  Aligned_cols=86  Identities=21%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC-
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS-  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~-  166 (207)
                      ++..+.+.-.++..+..|  +++|||++...+|+|. .|.|-...+...          ..  ++|||..||..+  .+ 
T Consensus        50 ~~l~~~ll~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~----------~~--tiCAEr~Ai~~a~~~Ge  116 (295)
T PRK09027         50 DALALALLPLAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAAL----------QQ--TVHAEQSAISHAWLRGE  116 (295)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCC----------CC--CcCHHHHHHHHHHHCCC
Confidence            333445555566667776  7999999999999987 999965432000          11  799999999876  22 


Q ss_pred             CCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804         167 ADTKRCKLYTSLFPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC~~C~~ai~~ag  192 (207)
                      ..+  ..+.++..||.+|.+.|.+..
T Consensus       117 ~~i--~~I~v~~sPCG~CRQ~l~E~~  140 (295)
T PRK09027        117 KAI--ADITVNYTPCGHCRQFMNELN  140 (295)
T ss_pred             Cce--EEEEEEecCchhhHHHHHHhC
Confidence            233  445667789999999999864

>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain

Probab=98.22  E-value=1.2e-06  Score=64.50  Aligned_cols=46  Identities=20%  Similarity=0.242  Sum_probs=37.2

Q ss_pred             hhcccc--CCCCCCCcEEEEc-----CCCcHHHHHHHHHhCCCEEEEeccCCC
Q psy6804           2 NAILNK--NSADTKRCKLYTS-----LFPCNECAKVIIQSGIKEVIYMCDKHK   47 (207)
Q Consensus         2 nAi~~~--~~~~~~g~~lYvT-----~~PC~~Ca~~i~~~gI~~vv~~~~~~~   47 (207)
                      +||.++  .+....+.++|+|     ++||.||+++|.+.++++++|..++++
T Consensus        51 ~ai~~~~~~~~~~~~~~i~vs~~~~~~sPC~~C~~~l~~~~~~~v~~~~~~~~  103 (112)
T cd01283          51 TAIGKAVSEGLRRYLVTWAVSDEGGVWSPCGACRQVLAEFLPSRLYIIIDNPK  103 (112)
T ss_pred             HHHHHHHHcCCCceEEEEEEECCCCccCCCHHHHHHHHHhCCCCeEEEEEcCC
Confidence            455553  2234579999999     999999999999999999999887654

These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.

>PLN02402 cytidine deaminase

Probab=98.17  E-value=2.4e-05  Score=66.81  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK  164 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~  164 (207)
                      +.++..|++++++|..|  +.+|||+|+..||+|+ .|+|-...            ..++  +++||..||..+
T Consensus       193 ~~L~~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENA------------ay~~--slcAer~Ai~~~  251 (303)
T PLN02402        193 DDLKNEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESA------------AYNP--SMGPVQAALVAY  251 (303)
T ss_pred             HHHHHHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcC------------CCCC--cccHHHHHHHHH
Confidence            45889999999999998  7999999999999987 99997543            1234  899999999986

>PF14439 Bd3614-deam: Bd3614-like deaminase

Probab=97.97  E-value=9.9e-06  Score=59.32  Aligned_cols=50  Identities=16%  Similarity=0.268  Sum_probs=37.1

Q ss_pred             CCCCcEEEEcCCCcHHHHHHHHHhCC-------CEEEEeccCCCCCccchhhhhhhcccee
Q psy6804          11 DTKRCKLYTSLFPCNECAKVIIQSGI-------KEVIYMCDKHKQKPATIASKRMFDAAKV   64 (207)
Q Consensus        11 ~~~g~~lYvT~~PC~~Ca~~i~~~gI-------~~vv~~~~~~~~~~~~~~~~~~l~~~gI   64 (207)
                      --.|++||||+.||.|||.++..++-       .+|||+..++-.-    .....|+..|.
T Consensus        74 l~~ga~l~vTlqcCkMCAalv~a~~d~pg~~~~~~vvY~~ed~G~L----ardT~L~r~g~  130 (136)
T PF14439_consen   74 LPPGARLLVTLQCCKMCAALVCAASDRPGRRVPIDVVYLNEDPGSL----ARDTQLRRRGW  130 (136)
T ss_pred             CCCCcEEEEechhHHHHHHHHHHHhhCcCCccceEEEEecCCCCcc----hhHHHHHHHhh
Confidence            34699999999999999999998754       8999998765332    22334555444

>KOG2771|consensus

Probab=97.78  E-value=1.5e-05  Score=68.46  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=31.0

Q ss_pred             CCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccC
Q psy6804          13 KRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDK   45 (207)
Q Consensus        13 ~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~   45 (207)
                      .|.++|+|+|||.||+.+++.+.|+||+|.-..
T Consensus       272 tgydv~ll~EPC~MCsMALvHsRikRvfy~~~~  304 (344)
T KOG2771|consen  272 TGYDVYLLHEPCAMCSMALVHSRIKRVFYCKPM  304 (344)
T ss_pred             ecceEEEecChHHHHHHHHHHHhhhheeeccCC
Confidence            689999999999999999999999999998764

>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional

Probab=97.77  E-value=4.7e-05  Score=67.02  Aligned_cols=42  Identities=21%  Similarity=0.145  Sum_probs=37.3

Q ss_pred             HHHHccCCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         159 NAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       159 ~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      .||++.   .+.|.++|+|.+||..|+.+|+.+||+|||++. ++|
T Consensus        36 ~~l~~l---gi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~-D~d   77 (360)
T PRK14719         36 LSLKNL---KINANFITVSNTPVFQIADDLIAENISEVILLT-DFD   77 (360)
T ss_pred             HHHHHc---CCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE-CCC
Confidence            377776   667999999999999999999999999999999 554

>PF14437 MafB19-deam: MafB19-like deaminase

Probab=96.72  E-value=0.0099  Score=45.63  Aligned_cols=49  Identities=22%  Similarity=0.308  Sum_probs=38.6

Q ss_pred             CChHHHHHHHcc--CCCC-CCCcEEEEcccChHHHHHHH----HHhCCCEEEEEec
Q psy6804         153 MCHAEMNAILNK--NSAD-TKRCKLYTSLFPCNECAKVI----IQSGIKEVIYMCD  201 (207)
Q Consensus       153 ~~HAE~~Ai~~~--~~~~-~~~~~ly~T~ePC~~C~~ai----~~agi~~vvy~~~  201 (207)
                      ..|||+.||.+|  .+.. -+..+|||...+|..|-+.|    ..+|++++..-+.
T Consensus        80 ~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L~I~~~  135 (146)
T PF14437_consen   80 KAHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSLTIHEP  135 (146)
T ss_pred             HHHHHHHHHHHHHHhcCccCCeEEEEECcccchHHHHHHHHHHHHcCCCeEEEEec
Confidence            789999999987  2333 56799999999999998755    5689998855443

>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme

Probab=95.60  E-value=0.01  Score=47.68  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=39.0

Q ss_pred             CcEEEEcCCCcHH----HHHHHHHhC-------CCE-EEEeccCCCCCcc---chhhhhhhccceeeeeee
Q psy6804          14 RCKLYTSLFPCNE----CAKVIIQSG-------IKE-VIYMCDKHKQKPA---TIASKRMFDAAKVHYWSE   69 (207)
Q Consensus        14 g~~lYvT~~PC~~----Ca~~i~~~g-------I~~-vv~~~~~~~~~~~---~~~~~~~l~~~gI~v~~~   69 (207)
                      --|.|+|.+||..    ||+.|+..-       ++= |+++..|..+...   ...|.+.|.++|+.+...
T Consensus        75 ~ITwy~SwSPC~~~~~~Ca~~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~iM  145 (188)
T PF08210_consen   75 RITWYLSWSPCPESDHCCAEKIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEIM  145 (188)
T ss_dssp             EEEEEESSS--CC----HHHHHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE-
T ss_pred             EEEEEEecCCCcchhhHHHHHHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEEc
Confidence            4589999999999    999999752       222 4556666655555   467899999999999875

Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.

>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase

Probab=95.31  E-value=0.055  Score=40.50  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804          94 YFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK  164 (207)
Q Consensus        94 ~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~  164 (207)
                      .....|+++|++|..|  +.++|++|++++|+|+ .|++-...            ..||  ++.+...||...
T Consensus        35 ~l~~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~-~G~y~EnA------------AfNP--Sl~PlQ~AL~~~   92 (124)
T PF08211_consen   35 PLVQAALEAANRSYAPYSKCPSGVALLTSDGRIY-TGRYAENA------------AFNP--SLPPLQAALVQA   92 (124)
T ss_dssp             HHHHHHHHHHCT-B-TTT---EEEEEEETTS-EE-EEE-B--T------------TSTT---B-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEeec------------ccCC--ChHHHHHHHHHH
Confidence            3788999999999988  7899999999999987 78876532            3466  899999999864

Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.

>PF14431 YwqJ-deaminase: YwqJ-like deaminase

Probab=95.03  E-value=0.095  Score=39.28  Aligned_cols=41  Identities=24%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             CChHHHHHHHcc--C----CCCCCCcEEEEc-------------ccChHHHHHHHHHhCC
Q psy6804         153 MCHAEMNAILNK--N----SADTKRCKLYTS-------------LFPCNECAKVIIQSGI  193 (207)
Q Consensus       153 ~~HAE~~Ai~~~--~----~~~~~~~~ly~T-------------~ePC~~C~~ai~~agi  193 (207)
                      ..|||+.||.++  .    ...+++..+++.             ..||..|...+.+.||
T Consensus        66 G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC~nC~~~l~~~~v  125 (125)
T PF14431_consen   66 GRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPCRNCAALLKHFGV  125 (125)
T ss_pred             CcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCCchHHHHHhhcCC
Confidence            789999999875  1    233444444332             4599999999999886

>PLN02182 cytidine deaminase

Probab=93.70  E-value=0.41  Score=41.76  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEee
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGY  129 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~  129 (207)
                      ......|+++|.+|..|  +.+-|.+|.+.+|+|. .|+
T Consensus       202 ~~l~~~Al~AAn~S~APYS~~~SGvAL~~~~G~vy-~G~  239 (339)
T PLN02182        202 SHLKCKALAAANNSFSPYTESPSGVALLDNDGKWY-RGW  239 (339)
T ss_pred             cHHHHHHHHHHHhccCCccCCCceEEEEeCCCCEE-Eee
Confidence            45678899999999998  6789999999999987 454

>PF14427 Pput2613-deam: Pput_2613-like deaminase

Probab=89.73  E-value=2.5  Score=30.87  Aligned_cols=49  Identities=14%  Similarity=0.255  Sum_probs=35.5

Q ss_pred             CChHHHHHHHccCCCCCCCcEEEE--cccChHHHHHHHHHhCC---CEEEEEec
Q psy6804         153 MCHAEMNAILNKNSADTKRCKLYT--SLFPCNECAKVIIQSGI---KEVIYMCD  201 (207)
Q Consensus       153 ~~HAE~~Ai~~~~~~~~~~~~ly~--T~ePC~~C~~ai~~agi---~~vvy~~~  201 (207)
                      ..|-|..+++......+.|=.|.+  ...||+.|.+++.++-=   ..|.|...
T Consensus        48 aTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~  101 (118)
T PF14427_consen   48 ATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWP  101 (118)
T ss_pred             hhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecC
Confidence            569999999998666655655554  46799999999998543   34556543

>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme

Probab=86.00  E-value=0.64  Score=37.30  Aligned_cols=39  Identities=33%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             CChHHHHHHHccCCCC------CCCcEEEEcccChHH----HHHHHHHh
Q psy6804         153 MCHAEMNAILNKNSAD------TKRCKLYTSLFPCNE----CAKVIIQS  191 (207)
Q Consensus       153 ~~HAE~~Ai~~~~~~~------~~~~~ly~T~ePC~~----C~~ai~~a  191 (207)
                      ..|||+.-|.......      .-.-|+|+|-.||..    |+..|+..
T Consensus        51 ~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~~~~~~Ca~~i~~F   99 (188)
T PF08210_consen   51 GRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCPESDHCCAEKIAEF   99 (188)
T ss_dssp             SB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--CC----HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCcchhhHHHHHHHHH
Confidence            6999999998763322      124788999999999    99999874

Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.

>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric

Probab=82.00  E-value=1.8  Score=32.33  Aligned_cols=25  Identities=16%  Similarity=0.404  Sum_probs=19.2

Q ss_pred             CCCCcEEEE----cCCCcHHHHHHHHHhC
Q psy6804          11 DTKRCKLYT----SLFPCNECAKVIIQSG   35 (207)
Q Consensus        11 ~~~g~~lYv----T~~PC~~Ca~~i~~~g   35 (207)
                      +++...++.    ...||.+|.+.|.+.+
T Consensus        66 ~i~~i~vv~~~~~~~sPCG~Crq~l~e~~   94 (127)
T TIGR01354        66 KFVAIAVADSADDPVSPCGACRQVLAEFA   94 (127)
T ss_pred             CeEEEEEEeCCCCCcCccHHHHHHHHHhC
Confidence            455555554    5799999999999987

This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.

>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional

Probab=81.41  E-value=29  Score=32.24  Aligned_cols=81  Identities=25%  Similarity=0.325  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--CCCCCC
Q psy6804          94 YFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--SADTKR  171 (207)
Q Consensus        94 ~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--~~~~~~  171 (207)
                      .=|..|+.+++.-+.  ..+  |++ +||.+|+.|..+..+                   +++-..|+.+++  +..++|
T Consensus       399 ~Dl~faw~v~K~vkS--NaI--Vvv-kd~~~vgIgaGQ~sR-------------------vd~t~~Ai~rag~~~~~~~g  454 (513)
T PRK00881        399 KDLLFAWKVVKHVKS--NAI--VYA-KDGQTVGIGAGQMSR-------------------VDSARIAIEKAGDAGLDLKG  454 (513)
T ss_pred             HHHHHHHHHHHhcCC--CcE--EEE-eCCeEEEECCCCcch-------------------HHHHHHHHHHHHHhccCcCC
Confidence            457778888886552  223  666 899999999988743                   677778888874  444588


Q ss_pred             cEEEEc-ccChHHHHHHHHHhCCCEEEE
Q psy6804         172 CKLYTS-LFPCNECAKVIIQSGIKEVIY  198 (207)
Q Consensus       172 ~~ly~T-~ePC~~C~~ai~~agi~~vvy  198 (207)
                      ++|-.- .+|=+-+...+..+|++-|+-
T Consensus       455 av~aSDafFPf~Dtie~aa~~Gv~aIiq  482 (513)
T PRK00881        455 AVLASDAFFPFRDGVEAAAKAGITAIIQ  482 (513)
T ss_pred             eEEEeeCCCCchhHHHHHHHcCCeEEEe
Confidence            877544 358889999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2w4l_A	178	Human Dcmp Deaminase Length = 178		5e-44
2hvv_A	184	Crystal Structure Of Dcmp Deaminase From Streptococ		1e-15
1vq2_A	193	Crystal Structure Of T4-Bacteriophage Deoxycytidyla		1e-09
1z3a_A	168	Crystal Structure Of Trna Adenosine Deaminase Tada		5e-07
3ocq_A	183	Crystal Structure Of Trna-Specific Adenosine Deamin		8e-07
2b3z_A	373	Crystal Structure Of A Bifunctional Deaminase And R		2e-04
1wwr_A	171	Crystal Structure Of Trna Adenosine Deaminase Tada		8e-04

>pdb|2W4L|A Chain A, Human Dcmp Deaminase Length = 178

Iteration: 1
 Score =  173 bits (439), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 97/125 (77%), Gaps = 5/125 (4%)
Query: 83  KRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFP 142
           K+ DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD  P
Sbjct: 4   KKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLP 63
Query: 143 WDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVI 197
           W +   ++LD     +CHAE+NAI+NKN  D K C +Y +LFPCNECAK+IIQ+GIKEVI
Sbjct: 64  WRRTAENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVI 123
Query: 198 YMCDK 202
           +M DK
Sbjct: 124 FMSDK 128

>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus Mutans Length = 184

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 17/140 (12%)
Query: 68  SEMDKMNGVQN---GSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKI 124
           S M  M G Q    GS   R    L W +YFMA+A L++KRS      VGAV+V ++N+I
Sbjct: 19  SHMASMTGGQQMGRGSMTNR----LSWQDYFMANAELISKRSTCNRAYVGAVLV-KNNRI 73
Query: 125 VGTGYNGMPIGCSDDEFPWDKNTHDELDMC----HAEMNAILN--KNSADTKRCKLYTSL 178
           + TGYNG   G +D +   D     E   C    HAEMNA++   K        ++Y + 
Sbjct: 74  IATGYNG---GVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTH 130
Query: 179 FPCNECAKVIIQSGIKEVIY 198
           FPC  C K ++Q+G+K++ Y
Sbjct: 131 FPCINCTKALLQAGVKKITY 150

>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate Deaminase, Mutant R115e Length = 193

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 42/141 (29%)
Query: 99  AFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSD--DEFPW---------- 143
           A+LV++ SK    +VGAVI  ++ +I+ TGYNG P G   C D   E  W          
Sbjct: 10  AYLVSQESKCCSWKVGAVI-EKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAII 68
Query: 144 ---------------------DKNTHDEL---DMCHAEMNAIL--NKNSADTKRCKLYTS 177
                                 ++ H E    +  HAE+NAIL   +N +  +   +Y +
Sbjct: 69  QGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVT 128
Query: 178 LFPCNECAKVIIQSGIKEVIY 198
           L PC +CAK I QSGIK+++Y
Sbjct: 129 LSPCPDCAKAIAQSGIKKLVY 149

>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 92  HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
           HEY+M  A  +AKR+ D     VGAV+V+ +N+++G G+N  PIG        D   H E
Sbjct: 9   HEYWMRHALTLAKRAWDEREVPVGAVLVH-NNRVIGEGWN-RPIGRH------DPTAHAE 60
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
           +         + N    D     LY +L PC  CA  +I S I  V++
Sbjct: 61  IMALRQGGLVMQNYRLID---ATLYVTLEPCVMCAGAMIHSRIGRVVF 105

>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase From Salmonella Enterica Length = 183

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 92  HEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
           HEY+M  A  +AKR+ D     VGAV+V+ +++++G G+N  PIG        D   H E
Sbjct: 19  HEYWMRHALTLAKRAWDEREVPVGAVLVH-NHRVIGEGWN-RPIGRH------DPTAHAE 70
Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
           +         + N    DT    LY +L PC  CA  ++ S I  V++
Sbjct: 71  IMALRQGGLVLQNYRLLDT---TLYVTLEPCVMCAGAMVHSRIGRVVF 115

>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 29/113 (25%)
Query: 93  EYFMASAFLVAKRSKDPVTR---VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
           EY+M  A  +AK+ +        VGAV+V +D +IVG G                   H 
Sbjct: 15  EYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMG------------------AHL 55
Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEV 196
           +    HAE++AI +   A  +   +Y +L PC+       CA++II SGIK V
Sbjct: 56  KYGEAHAEVHAI-HMAGAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRV 107

>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Aquifex Aeolicus Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 24/113 (21%)
Query: 93  EYFMASAFLVAKRS-KDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
           EYF+  A   AKR+ +     VGA+IV E  +I+   +N +                +EL
Sbjct: 24  EYFLKVALREAKRAFEKGEVPVGAIIVKE-GEIISKAHNSV----------------EEL 66
Query: 152 D--MCHAEMNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIY 198
                HAEM AI       N+   + C+LY +L PC  C+  ++ S I++VI+
Sbjct: 67  KDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIF 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2w4l_A	178	DCMP deaminse, deoxycytidylate deaminase; pyrimidi	5e-62
2w4l_A	178	DCMP deaminse, deoxycytidylate deaminase; pyrimidi	4e-25
2hvw_A	184	Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa	1e-52
2hvw_A	184	Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa	2e-19
1vq2_A	193	DCMP deaminase, deoxycytidylate deaminase; hydrola	3e-41
1vq2_A	193	DCMP deaminase, deoxycytidylate deaminase; hydrola	2e-18
1p6o_A	161	Cytosine deaminase; hydrolase, dimer, inhibitor bo	4e-17
1p6o_A	161	Cytosine deaminase; hydrolase, dimer, inhibitor bo	4e-04
1wkq_A	164	Guanine deaminase; domain SWAP, the cytidine deami	2e-14
1wkq_A	164	Guanine deaminase; domain SWAP, the cytidine deami	1e-04
3dh1_A	189	TRNA-specific adenosine deaminase 2; zinc-binding	4e-14
2g84_A	197	Cytidine and deoxycytidylate deaminase zinc-bindi;	5e-14
2g84_A	197	Cytidine and deoxycytidylate deaminase zinc-bindi;	6e-04
1wwr_A	171	TRNA adenosine deaminase TADA; homodimer, riken st	7e-14
2hxv_A	360	Diaminohydroxyphosphoribosylaminopyrimidine deami	1e-13
2b3j_A	159	TRNA adenosine deaminase; mixed alpha-beta, protei	4e-13
2nx8_A	179	TRNA-specific adenosine deaminase; TAD, hydrolase;	4e-13
2b3z_A	373	Riboflavin biosynthesis protein RIBD; alpha/beta/a	5e-13
2a8n_A	144	Cytidine and deoxycytidylate deaminase; RNA editin	7e-13
1z3a_A	168	TRNA-specific adenosine deaminase; tRNA adenosine	9e-13
2g6v_A	402	Riboflavin biosynthesis protein RIBD; RIBD APO str	4e-12
3g8q_A	278	Predicted RNA-binding protein, contains thump doma	4e-05

>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178

 Score =  189 bits (483), Expect = 5e-62
 Identities = 83/128 (64%), Positives = 98/128 (76%), Gaps = 6/128 (4%)

Query: 80  SPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDD 139
           S  KR DD LEW EYFMA AFL A+RSKDP ++VGA IVN +NKIVG GYNGMP GCSDD
Sbjct: 2   SCKKR-DDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDD 60

Query: 140 EFPWDKNTHDELD-----MCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIK 194
             PW +   ++LD     +CHAE+NAI+NKN  D K C +Y +LFPCNECAK+IIQ+GIK
Sbjct: 61  VLPWRRTAENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIK 120

Query: 195 EVIYMCDK 202
           EVI+M DK
Sbjct: 121 EVIFMSDK 128

>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178

 Score = 95.6 bits (238), Expect = 4e-25
 Identities = 35/66 (53%), Positives = 48/66 (72%)

Query: 1   MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFD 60
           +NAI+NKN  D K C +Y +LFPCNECAK+IIQ+GIKEVI+M DK+       A++ +F+
Sbjct: 84  LNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFN 143

Query: 61  AAKVHY 66
            A V +
Sbjct: 144 MAGVTF 149

>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184

 Score =  166 bits (422), Expect = 1e-52
 Identities = 46/141 (32%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 68  SEMDKMNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGT 127
           S M  M G Q         + L W +YFMA+A L++KRS      VGAV+V  +N+I+ T
Sbjct: 19  SHMASMTGGQQMGRGSM-TNRLSWQDYFMANAELISKRSTCNRAYVGAVLVK-NNRIIAT 76

Query: 128 GYNGMPIGCSD-DEFPWDKNTHDELDMCHAEMNAILN--KNSADTKRCKLYTSLFPCNEC 184
           GYNG      + D+   +      +   HAEMNA++   K        ++Y + FPC  C
Sbjct: 77  GYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCINC 136

Query: 185 AKVIIQSGIKEVIYMCDKQMS 205
            K ++Q+G+K++ Y    ++ 
Sbjct: 137 TKALLQAGVKKITYNTAYRIH 157

>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 1   MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
           MNA++   K        ++Y + FPC  C K ++Q+G+K++ Y             +  +
Sbjct: 108 MNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHP----FAIEL 163

Query: 59  FDAAKVHY 66
               +V Y
Sbjct: 164 MTQKEVEY 171

>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193

 Score =  137 bits (346), Expect = 3e-41
 Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 42/155 (27%)

Query: 92  HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSD---------- 138
               +  A+LV++ SK    +VGAVI   + +I+ TGYNG P G   C D          
Sbjct: 3   ASTVLQIAYLVSQESKCCSWKVGAVIEK-NGRIISTGYNGSPAGGVNCCDYAAEQGWLLN 61

Query: 139 --------------------DEFPWDKNTHDELD------MCHAEMNAILN--KNSADTK 170
                               D F   K               HAE+NAIL   +N +  +
Sbjct: 62  KPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIE 121

Query: 171 RCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS 205
              +Y +L PC +CAK I QSGIK+++Y      +
Sbjct: 122 GATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKN 156

>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193

 Score = 78.1 bits (192), Expect = 2e-18
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 1   MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
           +NAIL   +N +  +   +Y +L PC +CAK I QSGIK+++Y     K KP       +
Sbjct: 107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP---GWDDI 163

Query: 59  FDAAKVHY 66
              A +  
Sbjct: 164 LRNAGIEV 171

>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161

 Score = 74.2 bits (183), Expect = 4e-17
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 25/117 (21%)

Query: 90  EWHEYFMASAFLVAKRSKD----PVTRVGAVIV-NEDNKIVGTGYNGMPIGCSDDEFPWD 144
           +W +  M  A+  A         P+   G  ++ N+D  ++G G+N M            
Sbjct: 12  KWDQKGMDIAYEEAALGYKEGGVPI---GGCLINNKDGSVLGRGHN-MRFQKGS---A-- 62

Query: 145 KNTHDELDMCHAEMNAILNKNSADTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 198
             T       H E++ + N    + K      LYT+L PC+ C   II  GI   + 
Sbjct: 63  --TL------HGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVV 111

>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 1   MNAILNKNSADTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 41
           ++ + N    + K      LYT+L PC+ C   II  GI   + 
Sbjct: 68  ISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVV 111

>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 27/121 (22%)

Query: 92  HEYFMASAFLVAKRSKD-----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKN 146
           HE F+  A  +A    +     P    GAVIV  D  I+  G N                
Sbjct: 11  HETFLKRAVTLACEGVNAGIGGPF---GAVIVK-DGAIIAEGQN-NVTT----------- 54

Query: 147 THDELDMCHAEMNAI----LNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDK 202
           ++D     HAE+ AI        +     C LYTS  PC  C   I  +  K V Y  + 
Sbjct: 55  SNDPT--AHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEH 112

Query: 203 Q 203
            
Sbjct: 113 T 113

>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 15  CKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPA 51
           C LYTS  PC  C   I  +  K V Y  +      A
Sbjct: 82  CILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAAEA 118

>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Length = 189

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 32/121 (26%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
            E +M  A  +AK + +    PV   G ++V  +N++VG G N                T
Sbjct: 26  TEKWMEEAMHMAKEALENTEVPV---GCLMV-YNNEVVGKGRN-EVNQ-----------T 69

Query: 148 HDELDMCHAEMNAI-------LNKNSADTKR---CKLYTSLFPCNECAKVIIQSGIKEVI 197
            +     HAEM AI            + ++      LY ++ PC  CA  +    I  V+
Sbjct: 70  KNAT--RHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVV 127

Query: 198 Y 198
           Y
Sbjct: 128 Y 128

>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 22/133 (16%), Positives = 41/133 (30%), Gaps = 31/133 (23%)

Query: 80  SPHKRVDDVLEWHEYFMASAFLVAKRSKD----PVTRVGAVIV-NEDNKIVGTGYNGMPI 134
                   VL   E  M     + + +      P     A +   +   ++  G N   +
Sbjct: 16  VQANNEPRVLAAPEARMGYVLELVRANIAADGGPF---AAAVFERDSGLLIAAGTN-RVV 71

Query: 135 GCSDDEFPWDKNTHDELDMCHAEMNAI---------LNKNSADTKRCKLYTSLFPCNECA 185
                               HAE+ A+          + ++     C+L TS  PC  C 
Sbjct: 72  PGRC---S----------AAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCF 118

Query: 186 KVIIQSGIKEVIY 198
             +I SG++ ++ 
Sbjct: 119 GAVIWSGVRSLVC 131

>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Length = 197

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 15  CKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK 47
           C+L TS  PC  C   +I SG++ ++       
Sbjct: 105 CELVTSAEPCVMCFGAVIWSGVRSLVCAARSDD 137

>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 35/115 (30%), Positives = 53/115 (46%), Gaps = 26/115 (22%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
            EYF+  A   AKR+ +    PV   GA+IV ++ +I+   +N                 
Sbjct: 23  KEYFLKVALREAKRAFEKGEVPV---GAIIV-KEGEIISKAHN-SVEE-----------L 66

Query: 148 HDELDMCHAEMNAILNKNSA-DTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 198
            D     HAEM AI       +TK    C+LY +L PC  C+  ++ S I++VI+
Sbjct: 67  KDPT--AHAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIF 119

>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 37/125 (29%)

Query: 92  HEYFMASAFLVAKRSKDPVT---RVGAVIVNEDNKIVGTGY---NGMPIGCSDDEFPWDK 145
           +E FM  A  +AK+    V     VGAV+V  D +I+  G+    G P            
Sbjct: 14  YETFMKRAIELAKKGLGRVNPNPPVGAVVVK-DGRIIAEGFHPYFGGP------------ 60

Query: 146 NTHDELDMCHAEMNAI--LNKNSADTKRCKLYTSLFPCNE------CAKVIIQSGIKEVI 197
                    HAE  AI    K   D +   L  +L PC+       C  +II+SGIK V+
Sbjct: 61  ---------HAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVV 111

Query: 198 Y-MCD 201
               D
Sbjct: 112 IGTRD 116

>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159

 Score = 63.3 bits (155), Expect = 4e-13
 Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 26/115 (22%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
             YFM  A   AK++      P+   GA+I  +D++++   +N +               
Sbjct: 7   DIYFMTLAIEEAKKAAQLGEVPI---GAIIT-KDDEVIARAHN-LRET-----------L 50

Query: 148 HDELDMCHAEMNAILNKNSA-DTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 198
                  HAE  AI        + R   C LY +L PC  CA  I+ S I  V+Y
Sbjct: 51  QQPT--AHAEHIAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVY 103

>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179

 Score = 63.8 bits (156), Expect = 4e-13
 Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 26/115 (22%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
             YFM  A   +++S      P+   G VIV  D +I+G G+N                +
Sbjct: 16  QTYFMQEALKESEKSLQKAEIPI---GCVIVK-DGEIIGRGHN-AREE-----------S 59

Query: 148 HDELDMCHAEMNAILNKNSA-DTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 198
           +  +   HAEM AI   N+     R     L+ ++ PC  C+  I  + I  VIY
Sbjct: 60  NQAI--MHAEMMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIY 112

>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373

 Score = 65.6 bits (161), Expect = 5e-13
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 42/142 (29%)

Query: 73  MNGVQNGSPHKRVDDVLEWHEYFMASAFLVAKRSKDPVT---RVGAVIVNEDNKIVGTGY 129
           M G  +   H  ++      EY+M  A  +AK+ +        VGAV+V  D +IVG G 
Sbjct: 1   MRGSHHHHHHGSME------EYYMKLALDLAKQGEGQTESNPLVGAVVVK-DGQIVGMGA 53

Query: 130 ---NGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNE--- 183
               G                       HAE++A ++   A  +   +Y +L PC+    
Sbjct: 54  HLKYGEA---------------------HAEVHA-IHMAGAHAEGADIYVTLEPCSHYGK 91

Query: 184 ---CAKVIIQSGIKEVIY-MCD 201
              CA++II SGIK V   M D
Sbjct: 92  TPPCAELIINSGIKRVFVAMRD 113

>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144

 Score = 62.5 bits (153), Expect = 7e-13
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 26/115 (22%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
             +FM  A + A+ + +    P+   GAV+V  D +++    N                 
Sbjct: 4   RTHFMELALVEARSAGERDEVPI---GAVLV-LDGRVIARSGN-RTRE-----------L 47

Query: 148 HDELDMCHAEMNAILNKNSA-DTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 198
           +D     HAE+  I     A   +R     LY +L PC  CA  I  + I+ + Y
Sbjct: 48  NDVT--AHAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYY 100

>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Length = 168

 Score = 62.6 bits (153), Expect = 9e-13
 Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 26/115 (22%)

Query: 92  HEYFMASAFLVAKRSKD----PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
           HEY+M  A  +AKR+ D    PV   GAV+V+ +N+++G G+N  PIG            
Sbjct: 9   HEYWMRHALTLAKRAWDEREVPV---GAVLVH-NNRVIGEGWN-RPIG-----------R 52

Query: 148 HDELDMCHAEMNAILNKNSA-DTKR---CKLYTSLFPCNECAKVIIQSGIKEVIY 198
           HD     HAE+ A+          R     LY +L PC  CA  +I S I  V++
Sbjct: 53  HDPT--AHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVF 105

>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 40/147 (27%), Positives = 54/147 (36%), Gaps = 39/147 (26%)

Query: 71  DKMNGVQNGSPHKRVDDVLEW---HEYFMASAFLVAKRSKDPVT---RVGAVIVNEDNKI 124
           D   G       K   + L      EY+MA A  +A+R +        VG VIV  D +I
Sbjct: 6   DDDKGSSTSLYKKAGSETLYIQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVK-DGEI 64

Query: 125 VGTGY---NGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPC 181
           VG GY    G P                     HAE++A L       K    Y +L PC
Sbjct: 65  VGEGYHQRAGEP---------------------HAEVHA-LRMAGEKAKGATAYVTLEPC 102

Query: 182 NE------CAKVIIQSGIKEVIY-MCD 201
           +       C   +I +G+  V+  M D
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASMQD 129

>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Length = 278

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 149 DELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYM 199
           +E D  HAE   ++ ++  + K   ++ +  PC  CA+ + ++G+  V+Y+
Sbjct: 38  EEADDEHAE-RKLVRRHDVEGK--VVFVTARPCLYCARELAEAGVAGVVYL 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
2w4l_A	178	DCMP deaminse, deoxycytidylate deaminase; pyrimidi	100.0
2hvw_A	184	Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa	99.97
1vq2_A	193	DCMP deaminase, deoxycytidylate deaminase; hydrola	99.97
2nx8_A	179	TRNA-specific adenosine deaminase; TAD, hydrolase;	99.96
2a8n_A	144	Cytidine and deoxycytidylate deaminase; RNA editin	99.96
1p6o_A	161	Cytosine deaminase; hydrolase, dimer, inhibitor bo	99.96
2g84_A	197	Cytidine and deoxycytidylate deaminase zinc-bindi;	99.96
2b3j_A	159	TRNA adenosine deaminase; mixed alpha-beta, protei	99.96
3dh1_A	189	TRNA-specific adenosine deaminase 2; zinc-binding	99.96
1z3a_A	168	TRNA-specific adenosine deaminase; tRNA adenosine	99.96
1wkq_A	164	Guanine deaminase; domain SWAP, the cytidine deami	99.96
1wwr_A	171	TRNA adenosine deaminase TADA; homodimer, riken st	99.95
2g6v_A	402	Riboflavin biosynthesis protein RIBD; RIBD APO str	99.92
2b3z_A	373	Riboflavin biosynthesis protein RIBD; alpha/beta/a	99.92
2hxv_A	360	Diaminohydroxyphosphoribosylaminopyrimidine deami	99.91
3g8q_A	278	Predicted RNA-binding protein, contains thump doma	99.86
2w4l_A	178	DCMP deaminse, deoxycytidylate deaminase; pyrimidi	99.69
1uwz_A	136	Cytidine deaminase; CDD, tetramer, zinc binding, p	99.64
1vq2_A	193	DCMP deaminase, deoxycytidylate deaminase; hydrola	99.64
2nyt_A	190	Probable C->U-editing enzyme apobec-2; cytidine de	99.63
2fr5_A	146	Cytidine deaminase; tetrahydrouridine, protein-inh	99.59
2hvw_A	184	Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa	99.59
3g8q_A	278	Predicted RNA-binding protein, contains thump doma	99.57
2z3g_A	130	Blasticidin-S deaminase; hydrolase, cytidine deami	99.56
1p6o_A	161	Cytosine deaminase; hydrolase, dimer, inhibitor bo	99.52
2nx8_A	179	TRNA-specific adenosine deaminase; TAD, hydrolase;	99.51
2nyt_A	190	Probable C->U-editing enzyme apobec-2; cytidine de	99.51
2a8n_A	144	Cytidine and deoxycytidylate deaminase; RNA editin	99.51
1z3a_A	168	TRNA-specific adenosine deaminase; tRNA adenosine	99.49
1wwr_A	171	TRNA adenosine deaminase TADA; homodimer, riken st	99.49
2b3j_A	159	TRNA adenosine deaminase; mixed alpha-beta, protei	99.48
2g84_A	197	Cytidine and deoxycytidylate deaminase zinc-bindi;	99.45
1wkq_A	164	Guanine deaminase; domain SWAP, the cytidine deami	99.44
3dh1_A	189	TRNA-specific adenosine deaminase 2; zinc-binding	99.44
2b3z_A	373	Riboflavin biosynthesis protein RIBD; alpha/beta/a	99.41
2hxv_A	360	Diaminohydroxyphosphoribosylaminopyrimidine deami	99.4
3b8f_A	142	Putative blasticidin S deaminase; cytidine deamina	99.37
2g6v_A	402	Riboflavin biosynthesis protein RIBD; RIBD APO str	99.35
1ctt_A	294	Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es	99.34
1r5t_A	142	Cytidine deaminase; zinc dependent deaminase, RNA	99.27
2d30_A	141	Cytidine deaminase; purines, pyrimidines, nucleosi	99.26
3r2n_A	138	Cytidine deaminase; structural genomics, seattle s	99.18
3mpz_A	150	Cytidine deaminase; ssgcid, structu genomics, seat	98.97
1ctt_A	294	Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es	98.89
3dmo_A	138	Cytidine deaminase; structural genomics, seattle s	98.87
3oj6_A	158	Blasticidin-S deaminase; ssgcid, seattle structura	98.77
4eg2_A	298	Cytidine deaminase; UMP synthesis, Zn binding, hyd	98.6
4eg2_A	298	Cytidine deaminase; UMP synthesis, Zn binding, hyd	98.3
3v4k_A	203	DNA DC->DU-editing enzyme apobec-3G; antiviral def	96.28
3vow_A	190	Probable DNA DC->DU-editing enzyme apobec-3C; anti	96.28
1uwz_A	136	Cytidine deaminase; CDD, tetramer, zinc binding, p	95.88
2fr5_A	146	Cytidine deaminase; tetrahydrouridine, protein-inh	94.9
3v4k_A	203	DNA DC->DU-editing enzyme apobec-3G; antiviral def	94.07
2z3g_A	130	Blasticidin-S deaminase; hydrolase, cytidine deami	94.05
3vow_A	190	Probable DNA DC->DU-editing enzyme apobec-3C; anti	92.53
3b8f_A	142	Putative blasticidin S deaminase; cytidine deamina	82.24

>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=234.60  Aligned_cols=120  Identities=67%  Similarity=1.196  Sum_probs=107.2

Q ss_pred             CCCCcCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCC-----CChH
Q psy6804          82 HKRVDDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELD-----MCHA  156 (207)
Q Consensus        82 ~~~~~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~-----~~HA  156 (207)
                      ++++.++++||++||++|+++|++|.++++|||||||++||+||++|+|+.+.+|.+.+++|.+..++++.     +.||
T Consensus         3 ~~~~~~~~~~d~~~M~~A~~~A~~s~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HA   82 (178)
T 2w4l_A            3 CKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHA   82 (178)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTTCCCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCH
T ss_pred             CcccccccHHHHHHHHHHHHHHHhcCCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCH
Confidence            46788899999999999999999999999999999998899999999999999999988888776455422     7999


Q ss_pred             HHHHHHccCCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEec
Q psy6804         157 EMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD  201 (207)
Q Consensus       157 E~~Ai~~~~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~  201 (207)
                      |++||.++.+..++|++||||+|||.||+++|+++||+||||+.+
T Consensus        83 E~~AI~~a~g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~  127 (178)
T 2w4l_A           83 ELNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSD  127 (178)
T ss_dssp             HHHHHHC----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHhcCCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEec
Confidence            999999987888999999999999999999999999999999987

>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*

Probab=99.97  E-value=3.3e-32  Score=216.12  Aligned_cols=116  Identities=35%  Similarity=0.677  Sum_probs=96.7

Q ss_pred             cCchhHHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCC---CCCCCCCCCCCCCCCCCCChHHHHHHH
Q psy6804          86 DDVLEWHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIG---CSDDEFPWDKNTHDELDMCHAEMNAIL  162 (207)
Q Consensus        86 ~~~~~~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~---~~~~~~~~~~~~~~~~~~~HAE~~Ai~  162 (207)
                      .++++||++||++|+++|++|.++++||||||| +||+||++|+|+.+.+   |.+.++...+...++  +.|||++||.
T Consensus        36 ~~~~~~de~~M~~A~~~A~~s~~~~~~VGAVIV-~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~--t~HAE~~AI~  112 (184)
T 2hvw_A           36 TNRLSWQDYFMANAELISKRSTCNRAYVGAVLV-KNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIR--TVHAEMNALI  112 (184)
T ss_dssp             -CCCCHHHHHHHHHHHHGGGCCCTTCCCEEEEE-ETTEEEEEEECEESTTSCCHHHHCCCEETTEECS--EECHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEECCCcccccccccccccccccccCC--ccCHHHHHHH
Confidence            346789999999999999999999999999999 5999999999998754   222122222233355  8999999999


Q ss_pred             ccC--CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         163 NKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       163 ~~~--~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ++.  +..++|++||+|+|||.||+++|+|+||+||||+.++++
T Consensus       113 ~A~~~g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~  156 (184)
T 2hvw_A          113 QCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRI  156 (184)
T ss_dssp             HHHHHTCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSC
T ss_pred             HHHHcCCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCC
Confidence            873  567899999999999999999999999999999998765

>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2

Probab=99.97  E-value=1.7e-30  Score=208.34  Aligned_cols=112  Identities=38%  Similarity=0.570  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCC-----CCCCCC------------------
Q psy6804          91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF-----PWDKNT------------------  147 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~-----~~~~~~------------------  147 (207)
                      ||++||++|+++|++|.++++||||||| ++|+||++|+|+++.+..+...     .|.+..                  
T Consensus         2 ~d~~fM~~A~~~A~rs~~~~~~VGAVIV-~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (193)
T 1vq2_A            2 KASTVLQIAYLVSQESKCCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGS   80 (193)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC------------------
T ss_pred             CHHHHHHHHHHHHHhcCCCCCCEEEEEE-ECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccc
Confidence            4899999999999999999999999999 8999999999999875211000     000000                  


Q ss_pred             ------------------CCCCCCChHHHHHHHcc--CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         148 ------------------HDELDMCHAEMNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       148 ------------------~~~~~~~HAE~~Ai~~~--~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                                        .++  +.|||++||.++  .+.++.|++||||+|||+||+++|+++||+||||+.++++.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~--~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~  156 (193)
T 1vq2_A           81 TDRFVLAKEHRSAHSEWSSKN--EIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKN  156 (193)
T ss_dssp             --CEEECGGGHHHHHHHHHHH--CBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTC
T ss_pred             ccccccchhhccccccccCCC--CCCHHHHHHHHHHhcCCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCc
Confidence                              012  789999999987  25688999999999999999999999999999999887753

>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}

Probab=99.96  E-value=4.2e-30  Score=203.45  Aligned_cols=103  Identities=31%  Similarity=0.442  Sum_probs=91.2

Q ss_pred             chhHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804          88 VLEWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--  164 (207)
Q Consensus        88 ~~~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--  164 (207)
                      .+++|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|.....            .|+  +.|||++||+++  
T Consensus        12 ~~~~d~~~M~~Al~~A~~a~~~g~~pVGAVIV~-~g~Ii~~G~N~~~~~------------~d~--t~HAE~~AI~~a~~   76 (179)
T 2nx8_A           12 SLEEQTYFMQEALKESEKSLQKAEIPIGCVIVK-DGEIIGRGHNAREES------------NQA--IMHAEMMAINEANA   76 (179)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhccccCCCCEEEEEEE-CCEEEEEEECCCCCc------------CCC--ccCHHHHHHHHHHH
Confidence            467999999999999999875 48999999995 999999999987532            355  899999999986  


Q ss_pred             --CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 --NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 --~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                        +...+.|++||||+|||+||+++|+|+||+||||+.++++.
T Consensus        77 ~~~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~  119 (179)
T 2nx8_A           77 HEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKF  119 (179)
T ss_dssp             HHTSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTT
T ss_pred             HcCCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCC
Confidence              45678999999999999999999999999999999988763

>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2

Probab=99.96  E-value=3.7e-30  Score=197.40  Aligned_cols=101  Identities=25%  Similarity=0.359  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          90 EWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      +||++||++|+++|+++.++ +.|||||||+ ||+||++|+|..+..            .|+  +.|||++||.++    
T Consensus         2 ~~d~~~m~~A~~~A~~a~~~~~~~VGAviv~-~g~Ii~~G~N~~~~~------------~~~--~~HAE~~Ai~~a~~~~   66 (144)
T 2a8n_A            2 AERTHFMELALVEARSAGERDEVPIGAVLVL-DGRVIARSGNRTREL------------NDV--TAHAEIAVIRMACEAL   66 (144)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhcCCCCCEEEEEEE-CCEEEEEEECCCCCC------------CCC--cCCHHHHHHHHHHHHc
Confidence            46899999999999998764 8999999996 999999999987542            355  899999999986    


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +...++|++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus        67 ~~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~  107 (144)
T 2a8n_A           67 GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKG  107 (144)
T ss_dssp             TCSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTT
T ss_pred             CCCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCc
Confidence            46688999999999999999999999999999999887753

>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A

Probab=99.96  E-value=4.9e-30  Score=200.01  Aligned_cols=102  Identities=25%  Similarity=0.363  Sum_probs=89.7

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC-CCceEEEEE-cCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCC
Q psy6804          89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIV-NEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS  166 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv-~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~  166 (207)
                      ++||++||++|+++|+++.++ +.||||||| ++||+||++|+|..+..            +++  +.|||++||.++..
T Consensus        11 ~~~d~~~M~~A~~~A~~a~~~~~~pVGAviVd~~~g~Ii~~G~N~~~~~------------~~~--t~HAE~~Ai~~a~~   76 (161)
T 1p6o_A           11 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQK------------GSA--TLHGEISTLENCGR   76 (161)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHHH------------TCS--SCCHHHHHHHHHCS
T ss_pred             CHHHHHHHHHHHHHHHhhhccCCCCEEEEEEEecCCEEEEEEECCCCCC------------CCc--ccCHHHHHHHHHHH
Confidence            468999999999999999765 799999999 58999999999986531            345  89999999999844


Q ss_pred             C---CCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         167 A---DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       167 ~---~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      .   .++|++||||+|||+||+++|+|+||+||||+.++++
T Consensus        77 ~~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~  117 (161)
T 1p6o_A           77 LEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNF  117 (161)
T ss_dssp             CCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSC
T ss_pred             hCCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCC
Confidence            3   5789999999999999999999999999999987764

>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2

Probab=99.96  E-value=1.1e-29  Score=204.05  Aligned_cols=102  Identities=23%  Similarity=0.326  Sum_probs=87.4

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCC-CeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804          89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIVNED-NKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--  164 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~-g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--  164 (207)
                      .++|++||++|+++|+++.+. +.|||||||+++ |+||++|+|+.+..            .++  +.|||++||+++  
T Consensus        25 ~~~d~~~M~~Al~~A~~a~~~~~~PvGAVIV~~~~g~Iia~G~N~~~~~------------~~~--~~HAE~~Ai~~a~~   90 (197)
T 2g84_A           25 LAAPEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVPG------------RCS--AAHAEILALSLAQA   90 (197)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTTT------------TCT--TCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhhhcCCCCEEEEEEEcCCCEEEEEEECCCCcc------------CCC--ccCHHHHHHHHHHH
Confidence            456999999999999998754 789999999878 99999999987642            345  899999999975  


Q ss_pred             --CCCC-----CCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         165 --NSAD-----TKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       165 --~~~~-----~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                        +...     ++|+|||||+|||+||+++|+|+||+||||+.++++
T Consensus        91 ~~~~~~L~~~~~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~  137 (197)
T 2g84_A           91 KLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDD  137 (197)
T ss_dssp             HHTCSCTTCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHH
T ss_pred             HcCCccccccCcCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCC
Confidence              2333     467999999999999999999999999999986643

>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2

Probab=99.96  E-value=1.4e-29  Score=197.23  Aligned_cols=101  Identities=31%  Similarity=0.432  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          90 EWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      ++|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|.....            .++  +.|||++||.++    
T Consensus         5 ~~d~~~m~~A~~~A~~a~~~~~~pVGAviv~-~g~Ii~~G~N~~~~~------------~~~--~~HAE~~Ai~~a~~~~   69 (159)
T 2b3j_A            5 TNDIYFMTLAIEEAKKAAQLGEVPIGAIITK-DDEVIARAHNLRETL------------QQP--TAHAEHIAIERAAKVL   69 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcCCCCCEEEEEEE-CCEEEEEEECCCCCC------------CCC--ccCHHHHHHHHHHHHc
Confidence            5899999999999999876 48999999996 999999999986431            234  899999999986    


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +...+.+++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus        70 ~~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~  110 (159)
T 2b3j_A           70 GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKG  110 (159)
T ss_dssp             TSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTT
T ss_pred             CCCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCc
Confidence            45688999999999999999999999999999999988764

>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=204.12  Aligned_cols=101  Identities=30%  Similarity=0.425  Sum_probs=86.5

Q ss_pred             hhHHHHHHHHHHHHHhhCC-CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCC-
Q psy6804          89 LEWHEYFMASAFLVAKRSK-DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNS-  166 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~-~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~-  166 (207)
                      +..|++||++|+++|+++. .++.||||||| +||+||++|+|+.+..            .++  +.|||++||+++.. 
T Consensus        23 ~~~d~~~M~~Al~lA~~a~~~~~~pVGAVIV-~~g~IIa~G~N~~~~~------------~~~--t~HAEi~AI~~a~~~   87 (189)
T 3dh1_A           23 MEETEKWMEEAMHMAKEALENTEVPVGCLMV-YNNEVVGKGRNEVNQT------------KNA--TRHAEMVAIDQVLDW   87 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhCCCCCEEEEEE-ECCEEEEEEeCCCCcc------------CCC--cCcHHHHHHHHHHHH
Confidence            3569999999999999985 46899999999 5999999999985431            234  89999999998621 


Q ss_pred             ---------CCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         167 ---------ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       167 ---------~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                               ..+.|+|||||+|||+||+++|+|+||+||||+.+++.
T Consensus        88 ~~~~~~~~~~~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~  134 (189)
T 3dh1_A           88 CRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNER  134 (189)
T ss_dssp             HHHHCCCHHHHHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTT
T ss_pred             HhhcCcccccccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCC
Confidence                     24789999999999999999999999999999987653

>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A

Probab=99.96  E-value=2.1e-29  Score=197.73  Aligned_cols=101  Identities=35%  Similarity=0.532  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          90 EWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      .+|++||++|+++|+++.+ ++.||||||| +||+||++|+|.....            .|+  +.|||++||.++    
T Consensus         7 ~~d~~~M~~A~~~A~~a~~~~~~pVGAviV-~~g~Ii~~G~N~~~~~------------~d~--t~HAE~~Ai~~a~~~~   71 (168)
T 1z3a_A            7 FSHEYWMRHALTLAKRAWDEREVPVGAVLV-HNNRVIGEGWNRPIGR------------HDP--TAHAEIMALRQGGLVM   71 (168)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhcCCCcEEEEEE-ECCEEEEEEEcccccC------------CCc--chhHHHHHHHHHHHHc
Confidence            3588999999999999876 4899999999 6999999999986532            345  899999999986    


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +...+.|++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus        72 ~~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~  112 (168)
T 1z3a_A           72 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKT  112 (168)
T ss_dssp             TSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred             CCCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCc
Confidence            45678999999999999999999999999999999988763

>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A

Probab=99.96  E-value=1.1e-29  Score=198.29  Aligned_cols=98  Identities=33%  Similarity=0.485  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----C
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----N  165 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~  165 (207)
                      |+.||++|+++|+++...  +.||||||| +||+||++|+|+....            .|+  +.|||++||+++    +
T Consensus        11 ~~~~M~~Al~~A~~a~~~g~~~pVGAVIV-~~g~Ii~~G~N~~~~~------------~d~--~~HAE~~AI~~a~~~~~   75 (164)
T 1wkq_A           11 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTTS------------NDP--TAHAEVTAIRKACKVLG   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCEEEEEE-ECCEEEEEEecCCcCC------------CCc--ccCHHHHHHHHHHHHcC
Confidence            788999999999998643  799999999 6999999999987542            345  899999999986    4


Q ss_pred             CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         166 SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ...++|++||||+|||+||+++|+|+||+||||+.++++
T Consensus        76 ~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~  114 (164)
T 1wkq_A           76 AYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTD  114 (164)
T ss_dssp             SSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHH
T ss_pred             CCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCC
Confidence            678899999999999999999999999999999987653

>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2

Probab=99.95  E-value=7.1e-29  Score=194.99  Aligned_cols=100  Identities=33%  Similarity=0.500  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----C
Q psy6804          91 WHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----N  165 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~  165 (207)
                      +|++||++|+++|+++.+ ++.|||||||+ ||+||++|+|.....            .|+  +.|||++||.++    +
T Consensus        22 ~~~~~M~~A~~~A~~a~~~~~~pVGAvIV~-dg~Ii~~G~N~~~~~------------~d~--t~HAE~~AI~~a~~~~g   86 (171)
T 1wwr_A           22 GKEYFLKVALREAKRAFEKGEVPVGAIIVK-EGEIISKAHNSVEEL------------KDP--TAHAEMLAIKEACRRLN   86 (171)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTSCCCEEEEEE-TTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhcccCCCCCEEEEEEE-CCEEEEEEECCCCcc------------CCc--ccCHHHHHHHHHHHHcC
Confidence            368899999999999876 48999999996 999999999987542            355  899999999986    4


Q ss_pred             CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         166 SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      ...+.|++||+|+|||+||+++|+|+||+||||+.++++.
T Consensus        87 ~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~  126 (171)
T 1wwr_A           87 TKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKH  126 (171)
T ss_dssp             CSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTT
T ss_pred             CCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCc
Confidence            5688999999999999999999999999999999887753

>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*

Probab=99.92  E-value=7.7e-26  Score=199.50  Aligned_cols=98  Identities=33%  Similarity=0.567  Sum_probs=88.1

Q ss_pred             chhHHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc
Q psy6804          88 VLEWHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK  164 (207)
Q Consensus        88 ~~~~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~  164 (207)
                      ..+||++||++|+++|+++.   +++.+|||||| +||+||+.|+|+...                  +.|||++||.++
T Consensus        26 ~~~~d~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~g------------------~~HAE~~Ai~~a   86 (402)
T 2g6v_A           26 IQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIV-KDGEIVGEGYHQRAG------------------EPHAEVHALRMA   86 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTTCTTSCCCEEEEE-ETTEEEEEEECCCTT------------------SCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCccCCCCCCEEEEEE-ECCEEEEEEeCCCCC------------------ccHHHHHHHHHh
Confidence            46799999999999999984   57899999999 599999999999753                  799999999998


Q ss_pred             CCCCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 NSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                       +..++|+|||||+|||      +||+++|+|+||+||||+..+++.
T Consensus        87 -~~~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~  132 (402)
T 2g6v_A           87 -GEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNP  132 (402)
T ss_dssp             -GGGGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSC
T ss_pred             -hHhcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCc
Confidence             5568999999999999      699999999999999999887764

>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*

Probab=99.92  E-value=1.8e-25  Score=195.49  Aligned_cols=95  Identities=37%  Similarity=0.545  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCC
Q psy6804          91 WHEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSA  167 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~  167 (207)
                      -|++||++|+++|+++.   +++.+|||||| +||+||++|+|+...                  +.|||++||+++ +.
T Consensus        13 ~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~------------------~~HAE~~Ai~~a-~~   72 (373)
T 2b3z_A           13 MEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLKYG------------------EAHAEVHAIHMA-GA   72 (373)
T ss_dssp             CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCSTT------------------SCCHHHHHHHHH-GG
T ss_pred             hHHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCCCC------------------CcCHHHHHHHHh-hH
Confidence            48899999999999985   57899999999 699999999999753                  799999999998 55


Q ss_pred             CCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         168 DTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       168 ~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      .++|+|||||+|||      +||+++|+++||+||||+..+++.
T Consensus        73 ~~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~  116 (373)
T 2b3z_A           73 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNP  116 (373)
T ss_dssp             GGTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCT
T ss_pred             hcCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccch
Confidence            78999999999999      799999999999999999887764

>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2

Probab=99.91  E-value=1.3e-24  Score=189.22  Aligned_cols=94  Identities=35%  Similarity=0.504  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHhhCC---CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC--C
Q psy6804          92 HEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN--S  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~---~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~--~  166 (207)
                      .++||++|+++|+++.   +++.||||||| +||+||++|+|+...                  +.|||++||+++.  +
T Consensus        14 ~~~~m~~al~lA~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~------------------~~HAE~~Ai~~a~~~~   74 (360)
T 2hxv_A           14 YETFMKRAIELAKKGLGRVNPNPPVGAVVV-KDGRIIAEGFHPYFG------------------GPHAERMAIESARKKG   74 (360)
T ss_dssp             HHHHHHHHHHHHHTTTTTSTTSCCCEEEEE-ETTEEEEEEECCSTT------------------SCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhccccCCCCCEEEEEE-ECCEEEEEEeCCCCC------------------CcCHHHHHHHHHHhcC
Confidence            3679999999999974   46899999999 599999999999743                  7999999999872  5


Q ss_pred             CCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804         167 ADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ..+.|+|||||+|||      +||+++|+++||+||||+..+++
T Consensus        75 ~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~  118 (360)
T 2hxv_A           75 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPN  118 (360)
T ss_dssp             CCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCC
T ss_pred             CCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCch
Confidence            788999999999999      69999999999999999998775

>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}

Probab=99.86  E-value=4.4e-22  Score=160.41  Aligned_cols=71  Identities=24%  Similarity=0.384  Sum_probs=63.9

Q ss_pred             CCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCCCCCcEEEEcccChHHHHHH
Q psy6804         108 DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKV  187 (207)
Q Consensus       108 ~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~ly~T~ePC~~C~~a  187 (207)
                      .|+.+|||||| +||+||+.|.+   +                  +.|||++||+   +..+.|++||+|+|||+||+++
T Consensus        19 ~PNPpVGAVIV-kDGeIIA~Ge~---g------------------TaHAEInAIr---g~~L~GaTLYVTLEPC~MCAgA   73 (278)
T 3g8q_A           19 IPKRTVTAALL-EGGEIVAVEEA---D------------------DEHAERKLVR---RHDVEGKVVFVTARPCLYCARE   73 (278)
T ss_dssp             SCCSSCEEEEE-ETTEEEEEEEC---S------------------SSCHHHHHHH---HSCCTTCEEEESSCCCHHHHHH
T ss_pred             CCCCCEEEEEE-ECCEEEEecCC---C------------------CCCHHHHHhC---CCCCCCcEEEEeCCchHHHHHH
Confidence            57999999999 69999999932   1                  7999999998   4678999999999999999999


Q ss_pred             HHHhCCCEEEEEecCC
Q psy6804         188 IIQSGIKEVIYMCDKQ  203 (207)
Q Consensus       188 i~~agi~~vvy~~~~~  203 (207)
                      |+|+||+||||+.++.
T Consensus        74 II~AGIkRVVYGa~~~   89 (278)
T 3g8q_A           74 LAEAGVAGVVYLGRGR   89 (278)
T ss_dssp             HHTTTCCEEEEEECSS
T ss_pred             HHHhCCCEEEEEecCC
Confidence            9999999999998754

>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}

Probab=99.69  E-value=1.4e-17  Score=131.34  Aligned_cols=70  Identities=50%  Similarity=0.887  Sum_probs=55.9

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +|||+++.+.+++|+|||||+|||.||+++|+++||++|||+.+++.+......+.++|+++||++.+..
T Consensus        84 ~~AI~~a~g~~~~g~tlYvTlePC~~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~aGI~V~~~~  153 (178)
T 2w4l_A           84 LNAIMNKNLTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRKFI  153 (178)
T ss_dssp             HHHHHC----CCTTCEEEEEECCCHHHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEEECC
T ss_pred             HHHHHHhcCCCccccEEEEeCCcHHHHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHCCCEEEEcc
Confidence            4899987678899999999999999999999999999999998744333223347899999999999854

>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*

Probab=99.64  E-value=1.1e-15  Score=115.63  Aligned_cols=86  Identities=20%  Similarity=0.315  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~  166 (207)
                      ++.+|+.|+++++++..|  +.||||+|++.||+|+ +|+|.....            .++  +.|||+.||.++   +.
T Consensus         3 ~~~l~~~A~~aa~~ayapYs~~~VGAal~~~dG~i~-~G~Nvena~------------~~~--t~cAE~~Ai~~A~~~G~   67 (136)
T 1uwz_A            3 RQELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAA------------YSM--CNCAEATALFKAVSEGD   67 (136)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhccCccCCCCEEEEEEeCCCeEE-EEeCcccCC------------CCC--ccCHHHHHHHHHHHCCC
Confidence            567999999999999986  7899999999899999 899976431            234  899999999986   56


Q ss_pred             CCCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804         167 ADTKRCKLYTS----LFPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~~~~~~~ly~T----~ePC~~C~~ai~~ag  192 (207)
                      ..+..+++|++    .+||.||.++|.+.+
T Consensus        68 ~~~~~~~l~~~~~~~~~PCg~Crq~l~e~~   97 (136)
T 1uwz_A           68 TEFQMLAVAADTPGPVSPCGACRQVISELC   97 (136)
T ss_dssp             CCEEEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred             CCeEEEEEEeCCCCccCHHHHHHHHHHHcC
Confidence            67889999996    899999999999987

>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2

Probab=99.64  E-value=1.5e-16  Score=127.17  Aligned_cols=67  Identities=33%  Similarity=0.565  Sum_probs=56.9

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +|||+++  .+.++.|+|||||+|||+||+++|+++||++|||+.++++..  + .+.++|+++||++.+..
T Consensus       107 ~~AI~~a~~~g~~~~g~tLYvT~ePC~~Ca~aIi~aGI~rVvy~~~~~~~~--~-~~~~~l~~aGI~v~~~~  175 (193)
T 1vq2_A          107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK--P-GWDDILRNAGIEVFNVP  175 (193)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC--T-TTTHHHHHTTCEEEECC
T ss_pred             HHHHHHHHhcCCCcCCeEEEEeCCCcHHHHHHHHHhCCCEEEEecCCCCcc--h-HHHHHHHHCCCEEEEeC
Confidence            4788885  356899999999999999999999999999999998877653  1 13589999999999843

>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A

Probab=99.63  E-value=4.6e-16  Score=123.65  Aligned_cols=76  Identities=20%  Similarity=0.268  Sum_probs=61.5

Q ss_pred             CCceEEEEEcC-C---CeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC---CCCCC-CcEEEEcccCh
Q psy6804         110 VTRVGAVIVNE-D---NKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN---SADTK-RCKLYTSLFPC  181 (207)
Q Consensus       110 ~~~vGaviv~~-~---g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~---~~~~~-~~~ly~T~ePC  181 (207)
                      +..+.|..|.. +   +.+|+.|+|+..               ++  +.|||++||.++.   +.... |+|||||+|||
T Consensus        32 ~~tyLcy~v~~~~~~~~~ii~~G~~~~~---------------~~--~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC   94 (190)
T 2nyt_A           32 NKTFLCYVVEAQGKGGQVQASRGYLEDE---------------HA--AAHAEEAFFNTILPAFDPALRYNVTWYVSSSPC   94 (190)
T ss_pred             CceEEEEEEEecCCCCCCeEEEEECCCC---------------CC--CcCHHHHHHHHHHHhcCccccCCeEEEEEcChH
Confidence            45678888853 2   569999999862               12  7999999999873   22344 99999999999


Q ss_pred             HHHHHHHHHh-----CCCEEEEEecC
Q psy6804         182 NECAKVIIQS-----GIKEVIYMCDK  202 (207)
Q Consensus       182 ~~C~~ai~~a-----gi~~vvy~~~~  202 (207)
                      +||+++|+++     ||++|||+.++
T Consensus        95 ~~Ca~aIi~al~~~~gI~rVV~~~~d  120 (190)
T 2nyt_A           95 AACADRIIKTLSKTKNLRLLILVGRL  120 (190)
T ss_pred             HHHHHHHHHhhhhcCCccEEEEEeec
Confidence            9999999999     99999998654

>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*

Probab=99.59  E-value=6.7e-15  Score=112.36  Aligned_cols=94  Identities=23%  Similarity=0.300  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---C
Q psy6804          91 WHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---N  165 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~  165 (207)
                      .++.+|+.|+++++++..|  +++|||+|+++||+|+ +|+|-....            .+.  ++|||+.||.++   +
T Consensus        14 ~~~~L~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas------------~~~--t~cAE~~Ai~~A~~~G   78 (146)
T 2fr5_A           14 HVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENAC------------YPL--GVCAERTAIQKAISEG   78 (146)
T ss_dssp             HHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccC------------CCC--CcCHHHHHHHHHHhCC
Confidence            3567999999999999886  7899999999999998 799976431            123  899999999986   5


Q ss_pred             CCCCCCcEEEEc-----ccChHHHHHHHHHhCCCEEEEE
Q psy6804         166 SADTKRCKLYTS-----LFPCNECAKVIIQSGIKEVIYM  199 (207)
Q Consensus       166 ~~~~~~~~ly~T-----~ePC~~C~~ai~~agi~~vvy~  199 (207)
                      ...+....+|++     .+||.||.++|.+.+-.-.|+.
T Consensus        79 ~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~~~~~v~~  117 (146)
T 2fr5_A           79 YKDFRAIAISSDLQEEFISPCGACRQVMREFGTDWAVYM  117 (146)
T ss_dssp             CCCEEEEEEEESCSSSCCCCCHHHHHHHHHTCSSCEEEE
T ss_pred             CCceEEEEEEeCCCCcccCCCHHHHHHHHHhCCCCEEEE
Confidence            566788999998     8999999999999983333443

>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*

Probab=99.59  E-value=3.4e-16  Score=123.98  Aligned_cols=66  Identities=23%  Similarity=0.524  Sum_probs=57.0

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +|||.++  .+.+++|+|||||+|||+||+++|+++||++|||+.++++..    .+.++|+++||++....
T Consensus       108 ~~AI~~A~~~g~~l~g~tlYvTlEPC~mCa~aIi~agI~rVVy~~~~~~~~----~~~~~L~~aGIeV~~~~  175 (184)
T 2hvw_A          108 MNALIQCAKEGISANNTEIYVTHFPCINCTKALLQAGVKKITYNTAYRIHP----FAIELMTQKEVEYVQHD  175 (184)
T ss_dssp             HHHHHHHHHHTCCCTTEEEEEEECCCHHHHHHHHHHTEEEEEEEECCSCCH----HHHHHHHHHTCEEEECC
T ss_pred             HHHHHHHHHcCCCceeEEEEECCCCHHHHHHHHHHHCCCeEEEEecCCCCH----HHHHHHHHCCCEEEEec
Confidence            4788874  256899999999999999999999999999999999887653    25899999999998853

>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}

Probab=99.57  E-value=1.8e-15  Score=122.08  Aligned_cols=62  Identities=15%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeecc
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMD   71 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~   71 (207)
                      +|||.   +.++.|||||||+|||+||+++|+|+||++|||+..+.     + .+.++|+++||++.+..+
T Consensus        47 InAIr---g~~L~GaTLYVTLEPC~MCAgAII~AGIkRVVYGa~~~-----G-~G~e~LreAGIEV~~L~~  108 (278)
T 3g8q_A           47 RKLVR---RHDVEGKVVFVTARPCLYCARELAEAGVAGVVYLGRGR-----G-LGPYYLARSGVEVVEVHP  108 (278)
T ss_dssp             HHHHH---HSCCTTCEEEESSCCCHHHHHHHHTTTCCEEEEEECSS-----C-CHHHHHHTTTCEEEEEEE
T ss_pred             HHHhC---CCCCCCcEEEEeCCchHHHHHHHHHhCCCEEEEEecCC-----C-hhHHHHHHCCCEEEEecC
Confidence            36775   56789999999999999999999999999999998642     2 368999999999998644

>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*

Probab=99.56  E-value=2.4e-14  Score=107.39  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=76.3

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC-CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---
Q psy6804          89 LEWHEYFMASAFLVAKRSKDP-VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---  164 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~~-~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---  164 (207)
                      ...|+.+|+.|+++++++..+ +++|||+|++.||+|+ +|.|.. .             .++  ++|||+.||.++   
T Consensus         4 ~~~~~~L~~~A~~a~~~ay~~s~f~VGAal~~~dG~i~-~G~NvE-~-------------~~~--t~cAE~~Ai~~A~~~   66 (130)
T 2z3g_A            4 SQEESTLIERATATINSIPISEDYSVASAALSSDGRIF-TGVNVY-H-------------FTG--GPCAELVVLGTAAAA   66 (130)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCSSSCEEEEEEETTSCEE-EEECCC-C-------------TTT--CCCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCCCCEEEEEEecCCeEE-EEeccc-c-------------CCc--ccCHHHHHHHHHHHc
Confidence            456778999999999998776 6899999999999998 699976 1             123  899999999986   


Q ss_pred             CCCCCCCcEEEE-----cccChHHHHHHHHHhCCCEEEEE
Q psy6804         165 NSADTKRCKLYT-----SLFPCNECAKVIIQSGIKEVIYM  199 (207)
Q Consensus       165 ~~~~~~~~~ly~-----T~ePC~~C~~ai~~agi~~vvy~  199 (207)
                      +...++..++|+     +.+||.||.+.|.+.+-.-.|+.
T Consensus        67 G~~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~~~v~~  106 (130)
T 2z3g_A           67 AAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIV  106 (130)
T ss_dssp             TCCCEEEEEEEETTTTEEECCCHHHHHHHHHHCTTCEEEE
T ss_pred             CCCceEEEEEEECCCCCccCcCHHHHHHHHHhCCCCEEEE
Confidence            445677888998     68899999999999874433443

>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A

Probab=99.52  E-value=4.4e-15  Score=115.39  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             ChhccccCCC---CCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNKNSA---DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~~~~---~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      ++||.++...   +++|+|||||+|||+||+++|+++||++|||+..+++..    .+.++|+++||++..
T Consensus        68 ~~Ai~~a~~~~~~~~~~~tlYvT~EPC~mC~~ai~~agi~rVv~g~~~~~~g----~~~~~l~~~gi~v~~  134 (161)
T 1p6o_A           68 ISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFKS----KGEKYLQTRGHEVVV  134 (161)
T ss_dssp             HHHHHHHCSCCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCCC----THHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHhCCccccccccccCCCCCHHHHHHHHHhCCCEEEEEecCCCCc----cHHHHHHhcCCEEEE
Confidence            4788886432   578999999999999999999999999999999876542    367889999999986

>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}

Probab=99.51  E-value=1.1e-14  Score=114.99  Aligned_cols=61  Identities=21%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccc
Q psy6804           1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAA   62 (207)
Q Consensus         1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~   62 (207)
                      ++||.++    +..++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++.
T Consensus        68 ~~AI~~a~~~~~~~~l~g~tlYvTlEPC~mCa~ai~~agI~rVv~g~~d~~~g~~g~-~~~~l~~~  132 (179)
T 2nx8_A           68 MMAINEANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDS-LYQILTDE  132 (179)
T ss_dssp             HHHHHHHHHHHTSSCCTTEEEEEEECCBHHHHHHHHHTTCCEEEEEECCTTTBTTTT-SCCGGGCT
T ss_pred             HHHHHHHHHHcCCCcccceEEEECCCCcHHHHHHHHHhCCCeEEEEEeCCCCccccc-HHHHhhcc
Confidence            3677764    3457899999999999999999999999999999999887765443 45677655

>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A

Probab=99.51  E-value=8e-15  Score=116.49  Aligned_cols=69  Identities=17%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             ChhccccC---CCCCC-CcEEEEcCCCcHHHHHHHHHh-----CCCEEEEeccCCC-CCccchhhhhhhccceeeeeee
Q psy6804           1 MNAILNKN---SADTK-RCKLYTSLFPCNECAKVIIQS-----GIKEVIYMCDKHK-QKPATIASKRMFDAAKVHYWSE   69 (207)
Q Consensus         1 ~nAi~~~~---~~~~~-g~~lYvT~~PC~~Ca~~i~~~-----gI~~vv~~~~~~~-~~~~~~~~~~~l~~~gI~v~~~   69 (207)
                      +|||.++.   +.++. |+|||||+|||+||+++|+++     ||++|||+..++. +++....+.++|+++||++...
T Consensus        67 ~~Ai~~a~~~l~~~~~~g~TlYvTlePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V~~~  145 (190)
T 2nyt_A           67 EAFFNTILPAFDPALRYNVTWYVSSSPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKLRIM  145 (190)
T ss_pred             HHHHHHHHHhcCccccCCeEEEEEcChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEEEEe
Confidence            47887742   33555 999999999999999999999     9999999765442 2222336899999999999874

>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2

Probab=99.51  E-value=1.4e-14  Score=110.62  Aligned_cols=67  Identities=22%  Similarity=0.360  Sum_probs=53.9

Q ss_pred             Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc----ceeeeee
Q psy6804           1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA----AKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~----~gI~v~~   68 (207)
                      ++||.++    ++.++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++    .++++..
T Consensus        56 ~~Ai~~a~~~~~~~~~~~~tly~T~ePC~mC~~ai~~~~i~rvv~~~~~~~~~~~g~-~~~~~~~~~~~~~~~v~~  130 (144)
T 2a8n_A           56 IAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVES-GVRFFSQPTCHHAPDVYS  130 (144)
T ss_dssp             HHHHHHHHHHHTCSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSS-TTCGGGSTTCCCCCEEEE
T ss_pred             HHHHHHHHHHcCCCccCCeEEEECCCChHHHHHHHHHHCCCEEEEeecCCCccccch-HHHHHhccccCCCcEEEe
Confidence            3677764    4568999999999999999999999999999999999887765443 4667776    5666654

>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A

Probab=99.49  E-value=1.7e-14  Score=112.80  Aligned_cols=60  Identities=23%  Similarity=0.331  Sum_probs=49.4

Q ss_pred             hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccc
Q psy6804           2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAA   62 (207)
Q Consensus         2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~   62 (207)
                      +||.++    +..++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++.
T Consensus        62 ~Ai~~a~~~~~~~~l~~~tlYvTlEPC~mC~~ai~~agi~rVv~g~~d~~~g~~g~-~~~~l~~~  125 (168)
T 1z3a_A           62 MALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGS-LMDVLHHP  125 (168)
T ss_dssp             HHHHHHHHHHTSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTT-SCBCTTCT
T ss_pred             HHHHHHHHHcCCCcccccEEEEcCCCcHHHHHHHHHHCcCEEEEEecCCCccccch-hHHHhhcc
Confidence            577764    3457899999999999999999999999999999999888765443 45667665

>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2

Probab=99.49  E-value=2.4e-14  Score=112.11  Aligned_cols=67  Identities=27%  Similarity=0.437  Sum_probs=53.6

Q ss_pred             Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc----ceeeeee
Q psy6804           1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA----AKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~----~gI~v~~   68 (207)
                      ++||.++    ++.++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++    .++++..
T Consensus        75 ~~AI~~a~~~~g~~~l~~~tlYvT~EPC~mC~~ai~~agi~rVv~~~~d~~~g~~g~-~~~~l~~~~~~~~i~V~~  149 (171)
T 1wwr_A           75 MLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVS-VFNILDEPTLNHRVKWEY  149 (171)
T ss_dssp             HHHHHHHHHHHTCSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTT-SCCGGGCTTCSSCCEEEE
T ss_pred             HHHHHHHHHHcCCCccCceEEEECCCChHHHHHHHHHHCCCEEEEEecCCCccccch-HHHHHhccccCCCcEEEE
Confidence            3677764    3567999999999999999999999999999999999887765443 4566764    6677665

>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2

Probab=99.48  E-value=2.3e-14  Score=111.10  Aligned_cols=59  Identities=31%  Similarity=0.430  Sum_probs=48.6

Q ss_pred             hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcc
Q psy6804           2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDA   61 (207)
Q Consensus         2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~   61 (207)
                      +||.++    ++.++.|+|||||+|||+||+++|+++||++|||+..+++....+. +.++|++
T Consensus        60 ~Ai~~a~~~~~~~~l~~~tlyvT~EPC~mC~~ai~~agi~rVv~~~~~~~~~~~g~-~~~~l~~  122 (159)
T 2b3j_A           60 IAIERAAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGS-LMNLLQQ  122 (159)
T ss_dssp             HHHHHHHHHHTSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTT-SCBTTSC
T ss_pred             HHHHHHHHHcCCCCcceeEEEECCCCcHHHHHHHHHhCCCeEEEEeeCCCcccccH-HHHHHhc
Confidence            577764    4567899999999999999999999999999999999887764433 4566666

>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2

Probab=99.45  E-value=1.4e-14  Score=115.93  Aligned_cols=57  Identities=19%  Similarity=0.299  Sum_probs=44.7

Q ss_pred             CCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccc-------hhhhhhhccceeeeee
Q psy6804          12 TKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPAT-------IASKRMFDAAKVHYWS   68 (207)
Q Consensus        12 ~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~-------~~~~~~l~~~gI~v~~   68 (207)
                      +.|+|||||+|||+||+++|+++||++|||+..+++....+       ..+.+.|.+.++++..
T Consensus       102 ~~g~tlYvTlEPC~mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~  165 (197)
T 2g84_A          102 LPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTT  165 (197)
T ss_dssp             SCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEEC
T ss_pred             cCCEEEEEeCCCCHHHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEe
Confidence            46799999999999999999999999999999876532221       1244567788888765

>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A

Probab=99.44  E-value=1.2e-14  Score=113.21  Aligned_cols=49  Identities=29%  Similarity=0.464  Sum_probs=42.3

Q ss_pred             Chhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCC
Q psy6804           1 MNAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQK   49 (207)
Q Consensus         1 ~nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~   49 (207)
                      ++||.++    ++.++.|+|||||+|||+||+++|+++||++|||+..+++..
T Consensus        64 ~~AI~~a~~~~~~~~l~g~tlYvT~EPC~mCa~ai~~agI~rVv~g~~~~~~~  116 (164)
T 1wkq_A           64 VTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAA  116 (164)
T ss_dssp             HHHHHHHHHHHTSSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHH
T ss_pred             HHHHHHHHHHcCCCCcCceEEEEeCCChHHHHHHHHHHCCCEEEEEEcCCCcc
Confidence            3677774    456899999999999999999999999999999999876543

>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}

Probab=99.44  E-value=1.7e-14  Score=114.68  Aligned_cols=39  Identities=26%  Similarity=0.462  Sum_probs=35.5

Q ss_pred             CCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCC
Q psy6804          11 DTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQK   49 (207)
Q Consensus        11 ~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~   49 (207)
                      .+.|+|||||+|||+||+++|+++||++|||+..++...
T Consensus        98 ~l~g~tLYvTlEPC~mCa~Aii~agI~rVVyg~~~p~~g  136 (189)
T 3dh1_A           98 VFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFG  136 (189)
T ss_dssp             HHTTEEEEEEECCBHHHHHHHHHHTCCEEEEEECCTTTB
T ss_pred             ccCCeEEEEeCCChHHHHHHHHHhCCCEEEEEecCCCcc
Confidence            478999999999999999999999999999999876543

>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*

Probab=99.41  E-value=6.2e-14  Score=122.37  Aligned_cols=66  Identities=29%  Similarity=0.429  Sum_probs=58.1

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      +|||.++. ..++|+|||||+|||      +||+++|+++||++|||+..++++...+. +.++|+++||++..
T Consensus        64 ~~Ai~~a~-~~~~g~tlyvTlePC~~~G~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~-~~~~l~~~gi~v~~  135 (373)
T 2b3z_A           64 VHAIHMAG-AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGR-GISMMKEAGIEVRE  135 (373)
T ss_dssp             HHHHHHHG-GGGTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTH-HHHHHHTTTCEEEE
T ss_pred             HHHHHHhh-HhcCCeEEEEeCCCccCcCCChHHHHHHHHhCCCEEEEEecccchhhhhH-HHHHHHhCCeEEEe
Confidence            47888874 578999999999999      79999999999999999999988766554 78899999999976

>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2

Probab=99.40  E-value=7.6e-14  Score=121.28  Aligned_cols=66  Identities=24%  Similarity=0.353  Sum_probs=57.4

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      +|||+++  .+.++.|+|||||+|||      +||+++|+++||++|||+..++++ ..+. +.++|+++||++..
T Consensus        64 ~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~g~t~~C~~ai~~agi~rVv~~~~d~~~-~~g~-g~~~l~~~gi~v~~  137 (360)
T 2hxv_A           64 RMAIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGN-GVEKFRNHGIEVIE  137 (360)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCG-GGCC-HHHHHHTTTCEEEE
T ss_pred             HHHHHHHHhcCCCcCCcEEEEecCcccccCCCHHHHHHHHHhCCCEEEEEecCchh-hhhh-HHHHHHhCCcEEEE
Confidence            4788886  25689999999999999      699999999999999999998877 4443 78899999999976

>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}

Probab=99.37  E-value=1.3e-12  Score=99.27  Aligned_cols=96  Identities=19%  Similarity=0.119  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804          91 WHEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA  167 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~  167 (207)
                      +|+.+|+.|+++++++..|..+|||+|+++||+|+ +|+|-....            .++  ++|||..||.++   +..
T Consensus         3 ~~~~L~~~A~~a~~~ayaPyS~VGAAl~~~dG~i~-~G~NvEnas------------~~~--~lcAEr~Ai~~a~~~G~~   67 (142)
T 3b8f_A            3 IEQQLYDVVKQLIEQRYPNDWGGAAAIRVEDGTIY-TSVAPDVIN------------AST--ELCMETGAILEAHKFQKK   67 (142)
T ss_dssp             HHHHHHHHHHHHHHHHCSSSCEEEEEEEETTSCEE-EECCCCCSS------------GGG--CCCTTHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEEEeCCCcEE-EEECccccc------------CCc--ccCHHHHHHHHHHHCCCC
Confidence            57889999999999999884499999999999988 899975431            223  899999999986   333


Q ss_pred             CCCCcEEEE--------cccChHHHHHHHHHhCCCEEEEEec
Q psy6804         168 DTKRCKLYT--------SLFPCNECAKVIIQSGIKEVIYMCD  201 (207)
Q Consensus       168 ~~~~~~ly~--------T~ePC~~C~~ai~~agi~~vvy~~~  201 (207)
                      .+....++.        +..||.+|.+.|.+.+-.-.|+...
T Consensus        68 ~~~~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~~~~  109 (142)
T 3b8f_A           68 VTHSICLARENEHSELKVLSPCGVCQERLFYWGPEVQCAITN  109 (142)
T ss_dssp             EEEEEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEECCC
T ss_pred             cEEEEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEEEEC
Confidence            345556665        3459999999999998655555443

>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*

Probab=99.35  E-value=1.2e-13  Score=121.72  Aligned_cols=66  Identities=18%  Similarity=0.318  Sum_probs=57.3

Q ss_pred             ChhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           1 MNAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         1 ~nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      +|||.++. ..++|+|||||+|||      +||+++|+++||++|||+..++++...+. +.++|+++||++..
T Consensus        80 ~~Ai~~a~-~~~~g~tlyvt~ePC~h~G~tp~C~~ai~~agi~rVv~~~~~~~~~~~g~-g~~~l~~~gi~v~~  151 (402)
T 2g6v_A           80 VHALRMAG-EKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGR-GLYRLQQAGIDVSH  151 (402)
T ss_dssp             HHHHHHHG-GGGGSSCEEESSCCC-------CCHHHHHHTTCSCEEESSCCCSCSSSTT-HHHHHHHTTCCEEE
T ss_pred             HHHHHHhh-HhcCCeEEEEeCCCcCCCCCchHHHHHHHHhCCCEEEEEecCCCccccch-HHHHHHhCCcEEEe
Confidence            47888874 568999999999999      69999999999999999999988766554 78899999999976

>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*

Probab=99.34  E-value=4.4e-12  Score=106.95  Aligned_cols=155  Identities=13%  Similarity=0.150  Sum_probs=100.0

Q ss_pred             CCcEEEEcCCCcHHHHHHHHHhC--CC-EEEEeccCCCCCccchhhhhhhccceeeeeeecccccCccCCCCCCCCcCch
Q psy6804          13 KRCKLYTSLFPCNECAKVIIQSG--IK-EVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVL   89 (207)
Q Consensus        13 ~g~~lYvT~~PC~~Ca~~i~~~g--I~-~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~   89 (207)
                      +-..|.|+..||-+|.+.|.+.+  -. +|+....  +.  .  .-.++|-..- .... +.....++.+-...-.    
T Consensus       118 ~~~~iav~~~PCG~CRQ~l~E~~~~~~~~i~~~~~--~~--~--~l~eLLP~~F-~~~~-l~~~~~ll~~~~~~~~----  185 (294)
T 1ctt_A          118 ALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGR--EA--H--ALRDYLPDAF-GPKD-LEIKTLLMDEQDHGYA----  185 (294)
T ss_dssp             CEEEEEESSCCCHHHHHHHTTBTTGGGCEEECTTS--CC--E--EHHHHSTTCC-CGGG-GTCCCCBTSCCCCCCC----
T ss_pred             cEEEEEEEcCCCHHHHHHHHHhCCCCCeEEEEECC--CC--C--cHHHhCCCCC-Chhh-cCcchhcccccccccc----
Confidence            45678889999999999999986  12 3332221  11  1  1122222110 0000 0000111111111111    


Q ss_pred             hHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--C
Q psy6804          90 EWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--N  165 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~  165 (207)
                      -.++.+++.|+++++++..|  +.+|||+|++.||+|+ +|.|-....            .++  ++|||..||..+  .
T Consensus       186 ~~~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnas------------y~~--tlCAEr~Ai~~av~~  250 (294)
T 1ctt_A          186 LTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAA------------FNP--TLPPLQGALILLNLK  250 (294)
T ss_dssp             CCSSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTT------------STT--CBCHHHHHHHHHHHT
T ss_pred             cChHHHHHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCC------------CCC--ccCHHHHHHHHHHHc
Confidence            12357999999999999987  7999999999999876 899976432            234  899999999986  3


Q ss_pred             C---CCCCCcEEEEccc----ChHHHHHHHHHhCCC
Q psy6804         166 S---ADTKRCKLYTSLF----PCNECAKVIIQSGIK  194 (207)
Q Consensus       166 ~---~~~~~~~ly~T~e----PC~~C~~ai~~agi~  194 (207)
                      +   ..++...++.+.+    ||.+|.+.|.+.+-.
T Consensus       251 G~~~~~i~~i~vv~~~~~~~sPCG~CRq~L~ef~~~  286 (294)
T 1ctt_A          251 GYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCH  286 (294)
T ss_dssp             TCCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHTCC
T ss_pred             CCCcCCEEEEEEEecCCCCcCccHHHHHHHHHHCCC
Confidence            3   3577888988877    999999999998743

>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1

Probab=99.27  E-value=3.7e-11  Score=91.26  Aligned_cols=86  Identities=23%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~  166 (207)
                      ++.+++.|+++++++..|  +++|||+|++.||+|+ +|.|-....            .++  ++|||..||..+   +.
T Consensus        11 ~~~L~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnas------------y~~--t~cAEr~Ai~~a~~~G~   75 (142)
T 1r5t_A           11 LEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENAS------------YSN--CICAERSAMIQVLMAGH   75 (142)
T ss_dssp             HHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccC------------CCC--CcCHHHHHHHHHHHcCC
Confidence            467999999999999987  7899999999999988 799975431            123  899999999986   33


Q ss_pred             CC-CCCcEEEEc----c-cChHHHHHHHHHhC
Q psy6804         167 AD-TKRCKLYTS----L-FPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~~-~~~~~ly~T----~-ePC~~C~~ai~~ag  192 (207)
                      .. ++...++..    . .||.+|.+.|.+.+
T Consensus        76 ~~~i~~i~vv~~~~~~~~~PCG~CRq~l~e~~  107 (142)
T 1r5t_A           76 RSGWKCMVICGDSEDQCVSPCGVCRQFINEFV  107 (142)
T ss_dssp             CSCCCEEEEEESCSSSCCCCCHHHHHHHHTTS
T ss_pred             CCceEEEEEEeCCCCcccCHHHHHHHHHHHhC
Confidence            34 788888874    4 89999999999986

>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1

Probab=99.26  E-value=3.3e-11  Score=91.28  Aligned_cols=86  Identities=20%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~  166 (207)
                      ++.+++.|.++++++..|  +++|||+|++.||+|+ +|.|-....            ...  ++|||..||.++   +.
T Consensus        12 ~~~L~~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnas------------y~~--t~CAEr~Ai~~Avs~G~   76 (141)
T 2d30_A           12 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENAS------------YGL--CNCAERTALFKAVSEGD   76 (141)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCC------------CCc--ccCHHHHHHHHHHHCCC
Confidence            456899999999999987  7899999999999987 999975431            112  799999999986   33


Q ss_pred             CCCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804         167 ADTKRCKLYTS----LFPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~~~~~~~ly~T----~ePC~~C~~ai~~ag  192 (207)
                      ..+....++..    ..||.+|.+.|.+.+
T Consensus        77 ~~~~aiav~~~~~~~~~PCG~CRQ~l~E~~  106 (141)
T 2d30_A           77 KEFVAIAIVADTKRPVPPCGACRQVMVELC  106 (141)
T ss_dssp             CCEEEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred             CceEEEEEEeCCCCccCcCHHHHHHHHHhc
Confidence            44445555554    679999999999986

>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0

Probab=99.18  E-value=6.3e-11  Score=89.36  Aligned_cols=88  Identities=22%  Similarity=0.300  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA  167 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~  167 (207)
                      +.+++.|.++++++..|  +++|||+|++.||+|+ +|.|-....            ...  ++|||..||.++   +..
T Consensus        11 ~~L~~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnas------------y~~--t~CAEr~Ai~~Av~~G~~   75 (138)
T 3r2n_A           11 DTLQKAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENAS------------YGL--ALCAECSMISALYATGGG   75 (138)
T ss_dssp             HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccC------------CCC--CcCHHHHHHHHHHHcCCC
Confidence            45899999999999887  7899999999999987 999976431            112  799999999986   333


Q ss_pred             CCCCcEEEEc------ccChHHHHHHHHHhCCCEEE
Q psy6804         168 DTKRCKLYTS------LFPCNECAKVIIQSGIKEVI  197 (207)
Q Consensus       168 ~~~~~~ly~T------~ePC~~C~~ai~~agi~~vv  197 (207)
                      .+.  .++++      ..||.+|.+.|.+.+-..|+
T Consensus        76 ~i~--aiav~~~~~~~~~PCG~CRQ~l~E~~~~~i~  109 (138)
T 3r2n_A           76 RLV--AVYCVDGNGDSLMPCGRCRQLLYEHGGPELK  109 (138)
T ss_dssp             CEE--EEEEECTTSCBCCCCHHHHHHHHHHHCTTCE
T ss_pred             ceE--EEEEEcCCCCcCCCCHHHHHHHHHhCCCCEE
Confidence            333  35555      68999999999997633343

>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A

Probab=98.97  E-value=1.4e-09  Score=82.88  Aligned_cols=90  Identities=22%  Similarity=0.311  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA  167 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~  167 (207)
                      +.+++.|.++++++..|  +++|||+|...||+|+ +|.|-....            ...  ++|||..||.++   +..
T Consensus        26 ~~L~~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnas------------y~~--t~CAEr~Ai~~Avs~G~~   90 (150)
T 3mpz_A           26 NALRSKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVS------------YGL--GLCAECAVVCALHSGGGG   90 (150)
T ss_dssp             HHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEeccccc------------CCc--cccHHHHHHHHHHHcCCC
Confidence            55999999999999876  7899999999999998 999976431            112  799999999986   333


Q ss_pred             CCCCcEEEE----cccChHHHHHHHHHhC-CCEEE
Q psy6804         168 DTKRCKLYT----SLFPCNECAKVIIQSG-IKEVI  197 (207)
Q Consensus       168 ~~~~~~ly~----T~ePC~~C~~ai~~ag-i~~vv  197 (207)
                      .+....++.    ...||.+|.+.|.+.+ ..-+|
T Consensus        91 ~i~aiavv~~~~~~~~PCG~CRQ~L~Ef~~~~v~v  125 (150)
T 3mpz_A           91 RLVALSCVGPDGGVLMPCGRCRQVLLEHGGPELLI  125 (150)
T ss_dssp             CEEEEEEECTTSCBCCCCHHHHHHHHHHHCTTCEE
T ss_pred             ceEEEEEEcCCCCccCCCHHHHHHHHHhCCCCEEE
Confidence            444433332    2579999999999975 44333

>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*

Probab=98.89  E-value=3.4e-09  Score=89.28  Aligned_cols=90  Identities=22%  Similarity=0.283  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804          89 LEWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--  164 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--  164 (207)
                      ++|++.++..|.++..++..|  +++|||+|++.||+|+ +|.|-...+-.          ...  ++|||..||.++  
T Consensus        47 ~~~~~ll~~~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~----------~~~--t~CAEr~Ai~~A~~  113 (294)
T 1ctt_A           47 LDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGAT----------MQQ--TVHAEQSAISHAWL  113 (294)
T ss_dssp             CCHHHHHHHHHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSC----------GGG--CBCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCcc----------CCC--ccCHHHHHHHHHHH
Confidence            357777777788888888887  8999999999999987 99997643100          011  799999999986  


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSG  192 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~ag  192 (207)
                      .+.. .-..+.++..||.+|.+.|.+.+
T Consensus       114 ~G~~-~~~~iav~~~PCG~CRQ~l~E~~  140 (294)
T 1ctt_A          114 SGEK-ALAAITVNYTPCGHCRQFMNELN  140 (294)
T ss_dssp             TTCC-CEEEEEESSCCCHHHHHHHTTBT
T ss_pred             cCCC-cEEEEEEEcCCCHHHHHHHHHhC
Confidence            2221 23566788999999999999986

>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}

Probab=98.87  E-value=1.6e-08  Score=76.06  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSA  167 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~  167 (207)
                      +..+++.|.++.+++..|  +++|||+|.+.||+|+ +|.|-.....            ..  ++|||..||.++  .+.
T Consensus        11 ~~~L~~~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy------------~~--t~CAEr~Ai~~Avs~G~   75 (138)
T 3dmo_A           11 HHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASY------------GL--CNCAERTALFSALAAGY   75 (138)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSG------------GG--CBCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeeccccc------------cc--ccCHHHHHHHHHHHcCC
Confidence            677899999999999987  7899999999999987 9999764310            11  799999999986  222


Q ss_pred             ---CCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804         168 ---DTKRCKLYTS----LFPCNECAKVIIQSG  192 (207)
Q Consensus       168 ---~~~~~~ly~T----~ePC~~C~~ai~~ag  192 (207)
                         .++...+...    ..||..|.+.|.+.+
T Consensus        76 ~~~~i~aiavv~~~~~~~~PCG~CRQ~l~Ef~  107 (138)
T 3dmo_A           76 RPGEFAAIAVVGETHGPIAPCGACRQVMIELG  107 (138)
T ss_dssp             CTTCEEEEEEEESCSSSCCCCHHHHHHHHHHH
T ss_pred             CcccEEEEEEEcCCCCccCCCHHHHHHHHHhC
Confidence               3433333222    469999999999974

>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}

Probab=98.77  E-value=9e-08  Score=73.49  Aligned_cols=90  Identities=14%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             chhHHHHHHHHHHHHHhhCCCCC-CceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804          88 VLEWHEYFMASAFLVAKRSKDPV-TRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--  164 (207)
Q Consensus        88 ~~~~~~~~m~~A~~~a~~s~~~~-~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--  164 (207)
                      ....++.+++.|.++.+++.-.+ ++|||+|.+.||+|+ +|.|-..-              ..  ++|||..||.++  
T Consensus        27 L~~ed~~Li~~A~~a~~~~PyS~~f~VGAAll~~dG~i~-tG~NVEn~--------------~~--~lCAEr~Ai~~Avs   89 (158)
T 3oj6_A           27 LSAAGQNLIDTATSVINGIPVSDFYSVASAAISDDGRVF-SGVNVYHF--------------NG--GPCAELVVLGVAAA   89 (158)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCCCSSSCEEEEEEETTSCEE-EEECCCCT--------------TT--CCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCCCEE-EEEccccC--------------Cc--cccHHHHHHHHHHH
Confidence            44567889999999987643223 799999999999988 99997421              01  789999999986  


Q ss_pred             -CCCCCCCcEEEEc-----ccChHHHHHHHHHhCCC
Q psy6804         165 -NSADTKRCKLYTS-----LFPCNECAKVIIQSGIK  194 (207)
Q Consensus       165 -~~~~~~~~~ly~T-----~ePC~~C~~ai~~agi~  194 (207)
                       +...+....+...     ..||..|.+.|.+.+-.
T Consensus        90 ~G~~~~~ai~vv~~~~~~~~~PCG~CRQvL~Ef~~~  125 (158)
T 3oj6_A           90 AGATKLTHIVAIANEGRGILSPCGRCRQVLADLHPG  125 (158)
T ss_dssp             TTCCCEEEEEEEETTTTEEECCCHHHHHHHHHHSTT
T ss_pred             hCCCceEEEEEEeCCCCCcCCCCHHHHHHHHHhCCC
Confidence             2223322222322     35999999999998643

>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}

Probab=98.60  E-value=1.7e-07  Score=78.78  Aligned_cols=153  Identities=10%  Similarity=0.091  Sum_probs=92.4

Q ss_pred             CcEEEEcCCCcHHHHHHHHHhCCC---EEEEeccCCCCCccchhhhhhhccceeeeeeecccccCccCCCCCCCCcCchh
Q psy6804          14 RCKLYTSLFPCNECAKVIIQSGIK---EVIYMCDKHKQKPATIASKRMFDAAKVHYWSEMDKMNGVQNGSPHKRVDDVLE   90 (207)
Q Consensus        14 g~~lYvT~~PC~~Ca~~i~~~gI~---~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~   90 (207)
                      =..|.|...||-+|-+.|.+.+-.   +|+...  ...  .  .-.++|-..- .... +.....++.+-...-.  ...
T Consensus       122 i~~iav~~~PCG~CRQ~l~Ef~~~~~~~v~~~~--~~~--~--~l~eLLP~~F-~~~~-L~~~~~ll~~~~~~~~--~~~  191 (298)
T 4eg2_A          122 VADITINFSPCGHCRQFMNELTTASSLKIQLPK--RAA--K--TLQEYLPESF-GPAD-LGIDSGLMSPVNHGKT--SDD  191 (298)
T ss_dssp             EEEEEESSCCCHHHHHHHTTBTTTTTCEEECSS--SCC--E--EHHHHSTTCC-CGGG-GTCCCCBTSCCCCCCC--CCC
T ss_pred             eEEEEeecCCCHHHHHHHHHhcCCCceEEEeCC--Cce--e--EHHHhCCCCC-Chhh-cCCchhhccccCCCCc--cCC
Confidence            346777899999999999998642   333321  111  1  0122221110 0000 0000011111111111  112


Q ss_pred             HHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC
Q psy6804          91 WHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS  166 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~  166 (207)
                      | +.+++.|+++++++..|  +.+|||+|.++||+|+ +|.|-...            ..++  +++||..||.++  .+
T Consensus       192 ~-~~L~~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnA------------ay~~--slcAEr~Al~~av~~G  255 (298)
T 4eg2_A          192 D-EELIQQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENA------------AFNP--SLPPLQVALAQAMMMG  255 (298)
T ss_dssp             C-CHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCT------------TSTT--CBCHHHHHHHHHHHTT
T ss_pred             H-HHHHHHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeecc------------ccCC--CCCHHHHHHHHHHHCC
Confidence            2 35889999999999887  7899999999999987 99997543            1234  899999999986  33


Q ss_pred             C---CCCCcEEEEc----ccChHHHHHHHHHhC
Q psy6804         167 A---DTKRCKLYTS----LFPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~---~~~~~~ly~T----~ePC~~C~~ai~~ag  192 (207)
                      .   .++...+.-.    ..||..|...|.+.+
T Consensus       256 ~~~~~i~aiv~v~~~~~~~sPCG~CRqvL~e~~  288 (298)
T 4eg2_A          256 ESFEDIEAAALVESATGKISHLADTQATLEVIN  288 (298)
T ss_dssp             CCGGGEEEEEEEECTTCSSCCHHHHHHHHHHHC
T ss_pred             CCccCeEEEEEEeCCCCCcCCcHHHHHHHHHhC
Confidence            3   3444444443    359999999999876

>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}

Probab=98.30  E-value=1.7e-06  Score=72.66  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~  166 (207)
                      ++..+..+-.++.++..|  +++|||++...||+|+ +|.|-...+-..          ..  ++|||..||.++   +.
T Consensus        53 ~el~~~l~~~A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~----------~~--t~CAEr~Ai~~Av~~G~  119 (298)
T 4eg2_A           53 ADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQL----------GQ--TVHAEQCAISHAWMKGE  119 (298)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCG----------GG--CBCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhCcCCcCCCcEEEEEEECCCcEE-EEEccccccccc----------Cc--cccHHHHHHHHHHhCCC
Confidence            455566667777788887  7899999999999987 999976421000          01  799999999986   22


Q ss_pred             CCCCCcEEEEcccChHHHHHHHHHhCC
Q psy6804         167 ADTKRCKLYTSLFPCNECAKVIIQSGI  193 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC~~C~~ai~~agi  193 (207)
                      ..+  ..+.+...||..|.+.|.+.+-
T Consensus       120 ~~i--~~iav~~~PCG~CRQ~l~Ef~~  144 (298)
T 4eg2_A          120 KGV--ADITINFSPCGHCRQFMNELTT  144 (298)
T ss_dssp             SCE--EEEEESSCCCHHHHHHHTTBTT
T ss_pred             Cce--EEEEeecCCCHHHHHHHHHhcC
Confidence            222  3466778999999999999864

>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*

Probab=96.28  E-value=0.0047  Score=48.87  Aligned_cols=56  Identities=18%  Similarity=0.164  Sum_probs=42.2

Q ss_pred             CcEEEEcCCCcHHHHHHHHHh-----CCCEEEE-eccCCCCCccchhhhhhhccceeeeeeec
Q psy6804          14 RCKLYTSLFPCNECAKVIIQS-----GIKEVIY-MCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus        14 g~~lYvT~~PC~~Ca~~i~~~-----gI~~vv~-~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      .-|-|+|.+||+.||..|+..     +++=.+| +..|.. .+...+|.+.|.++|+.+..+.
T Consensus       101 ~vTwy~SWSPC~~CA~~v~~FL~~~~~v~L~If~aRLY~~-~~~~~~gLr~L~~aG~~v~iM~  162 (203)
T 3v4k_A          101 RVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIKTARIYDD-QGRCQEGLRTLAEAGAKISIMT  162 (203)
T ss_pred             EEEEEEeCCChHHHHHHHHHHHhhCCCeEEEEEEEeeccc-CchHHHHHHHHHHCCCeEEecC
Confidence            457899999999999999975     5665555 355543 3445568999999999997743

>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A

Probab=96.28  E-value=0.0031  Score=49.44  Aligned_cols=56  Identities=21%  Similarity=0.240  Sum_probs=44.6

Q ss_pred             CcEEEEcCCCcHHHHHHHHHh-----CCCEEEE-eccCCCCCccchhhhhhhccceeeeeee
Q psy6804          14 RCKLYTSLFPCNECAKVIIQS-----GIKEVIY-MCDKHKQKPATIASKRMFDAAKVHYWSE   69 (207)
Q Consensus        14 g~~lYvT~~PC~~Ca~~i~~~-----gI~~vv~-~~~~~~~~~~~~~~~~~l~~~gI~v~~~   69 (207)
                      .-|-|+|-+||+.||+.|+..     +++=.|| +..|.-+++....|.+.|.++|+.+...
T Consensus        87 ~VTwy~SwSPC~~CA~~va~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~iM  148 (190)
T 3vow_A           87 QVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEIM  148 (190)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHCTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred             EEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEEEEecccccCchHHHHHHHHHHCCCcEEEe
Confidence            358899999999999999875     5665555 6667666666667999999999999764

>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*

Probab=95.88  E-value=0.0048  Score=45.92  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             CCCCCCCcEEEEc----CCCcHHHHHHHHHhC
Q psy6804           8 NSADTKRCKLYTS----LFPCNECAKVIIQSG   35 (207)
Q Consensus         8 ~~~~~~g~~lYvT----~~PC~~Ca~~i~~~g   35 (207)
                      +...+..+++|++    ++||.||.++|.+.+
T Consensus        66 G~~~~~~~~l~~~~~~~~~PCg~Crq~l~e~~   97 (136)
T 1uwz_A           66 GDTEFQMLAVAADTPGPVSPCGACRQVISELC   97 (136)
T ss_dssp             TCCCEEEEEEEESCSSSCCCCHHHHHHHHHHS
T ss_pred             CCCCeEEEEEEeCCCCccCHHHHHHHHHHHcC
Confidence            4567889999996    899999999999997

>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*

Probab=94.90  E-value=0.017  Score=43.40  Aligned_cols=28  Identities=21%  Similarity=0.536  Sum_probs=24.9

Q ss_pred             CCCCCCCcEEEEc-----CCCcHHHHHHHHHhC
Q psy6804           8 NSADTKRCKLYTS-----LFPCNECAKVIIQSG   35 (207)
Q Consensus         8 ~~~~~~g~~lYvT-----~~PC~~Ca~~i~~~g   35 (207)
                      +...++..++|.+     .+||.+|.+.|.+.+
T Consensus        78 G~~~l~~i~v~~~~~~~~~~PCG~Crq~l~E~~  110 (146)
T 2fr5_A           78 GYKDFRAIAISSDLQEEFISPCGACRQVMREFG  110 (146)
T ss_dssp             TCCCEEEEEEEESCSSSCCCCCHHHHHHHHHTC
T ss_pred             CCCceEEEEEEeCCCCcccCCCHHHHHHHHHhC
Confidence            4457889999998     899999999999997

>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*

Probab=94.07  E-value=0.042  Score=43.45  Aligned_cols=40  Identities=25%  Similarity=0.206  Sum_probs=31.2

Q ss_pred             CChHHHHHHHccCCCCC-----CCcEEEEcccChHHHHHHHHHhC
Q psy6804         153 MCHAEMNAILNKNSADT-----KRCKLYTSLFPCNECAKVIIQSG  192 (207)
Q Consensus       153 ~~HAE~~Ai~~~~~~~~-----~~~~ly~T~ePC~~C~~ai~~ag  192 (207)
                      ..|||+.-|.+.....+     -.-|.|+|-.||+.|+..|+..-
T Consensus        78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC~~CA~~v~~FL  122 (203)
T 3v4k_A           78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFI  122 (203)
T ss_pred             CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCChHHHHHHHHHHH
Confidence            57999999987532222     25778999999999999998753

>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*

Probab=94.05  E-value=0.03  Score=41.18  Aligned_cols=30  Identities=17%  Similarity=0.320  Sum_probs=24.8

Q ss_pred             CCCCCCCcEEEE-----cCCCcHHHHHHHHHhCCC
Q psy6804           8 NSADTKRCKLYT-----SLFPCNECAKVIIQSGIK   37 (207)
Q Consensus         8 ~~~~~~g~~lYv-----T~~PC~~Ca~~i~~~gI~   37 (207)
                      +...++..++|.     +++||.||.+.|.+.+-.
T Consensus        67 G~~~~~~i~vv~~~~~~~~~PCG~Crq~l~e~~~~  101 (130)
T 2z3g_A           67 AAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPG  101 (130)
T ss_dssp             TCCCEEEEEEEETTTTEEECCCHHHHHHHHHHCTT
T ss_pred             CCCceEEEEEEECCCCCccCcCHHHHHHHHHhCCC
Confidence            335788899998     689999999999999733

>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A

Probab=92.53  E-value=0.12  Score=40.48  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             CChHHHHHHHccCCCCCC-----CcEEEEcccChHHHHHHHHHh
Q psy6804         153 MCHAEMNAILNKNSADTK-----RCKLYTSLFPCNECAKVIIQS  191 (207)
Q Consensus       153 ~~HAE~~Ai~~~~~~~~~-----~~~ly~T~ePC~~C~~ai~~a  191 (207)
                      ..|||+.=|.+.....+.     .-|.|+|-.||..|+..|+..
T Consensus        64 ~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC~~CA~~va~F  107 (190)
T 3vow_A           64 HCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPCPDCAGEVAEF  107 (190)
T ss_dssp             GGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhhcCCCCCceEEEEEEEeCCchHHHHHHHHHH
Confidence            589999999875322222     368899999999999998763

>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}

Probab=82.24  E-value=0.49  Score=35.11  Aligned_cols=31  Identities=23%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             CCCCcEEEE--------cCCCcHHHHHHHHHhCCCEEEE
Q psy6804          11 DTKRCKLYT--------SLFPCNECAKVIIQSGIKEVIY   41 (207)
Q Consensus        11 ~~~g~~lYv--------T~~PC~~Ca~~i~~~gI~~vv~   41 (207)
                      .++...++.        ++.||.+|.+.|.+.|-.-.|+
T Consensus        68 ~~~~~~v~~~~~~~~~~~~sPCG~CRq~l~e~~~~~~v~  106 (142)
T 3b8f_A           68 VTHSICLARENEHSELKVLSPCGVCQERLFYWGPEVQCA  106 (142)
T ss_dssp             EEEEEEEEESSTTSCCEECCCCHHHHHHHGGGCTTCEEE
T ss_pred             cEEEEEEEecCCCCCCCCCCcHHHHHHHHHHhCCCCEEE
Confidence            345556665        4569999999999998443344

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1vq2a_	193	c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop	2e-18
d1vq2a_	193	c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriop	8e-04
d2g84a1	189	c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitr	2e-09
d1p6oa_	156	c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (S	1e-08
d1wwra1	151	c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {	2e-08
d2a8na1	130	c.97.1.2 (A:2-131) Cytidine and deoxycytidylate de	3e-08
d1wkqa_	158	c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus sub	3e-07
d1z3aa1	156	c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA	1e-04
d2b3za2	145	c.97.1.2 (A:1-145) Riboflavin biosynthesis protein	4e-04

>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 76.9 bits (188), Expect = 2e-18
 Identities = 40/151 (26%), Positives = 60/151 (39%), Gaps = 42/151 (27%)

Query: 92  HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDEL 151
               +  A+LV++ SK    +VGAVI   + +I+ TGYNG P G  +      +      
Sbjct: 3   ASTVLQIAYLVSQESKCCSWKVGAVIEK-NGRIISTGYNGSPAGGVNCCDYAAEQGWLLN 61

Query: 152 D---------------------------------------MCHAEMNAILN--KNSADTK 170
                                                     HAE+NAIL   +N +  +
Sbjct: 62  KPKHAIIQGHKPECVSFGSTDRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIE 121

Query: 171 RCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
              +Y +L PC +CAK I QSGIK+++Y   
Sbjct: 122 GATMYVTLSPCPDCAKAIAQSGIKKLVYCET 152

>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 1   MNAILN--KNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRM 58
           +NAIL   +N +  +   +Y +L PC +CAK I QSGIK+++Y     K KP       +
Sbjct: 107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP---GWDDI 163

Query: 59  FDAAKV 64
              A +
Sbjct: 164 LRNAGI 169

>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Length = 189

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 17/121 (14%)

Query: 88  VLEWHEYFMASAFLVAKRSKD----PVTRVGAVIV-NEDNKIVGTGYNGMPIGCSDDEFP 142
           VL   E  M     + + +      P     A +   +   ++  G N +  G       
Sbjct: 22  VLAAPEARMGYVLELVRANIAADGGPF---AAAVFERDSGLLIAAGTNRVVPGR------ 72

Query: 143 WDKNTHDELDMCHAEMNAILNKN--SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
                H E+         +   +  +     C+L TS  PC  C   +I SG++ ++   
Sbjct: 73  -CSAAHAEILALSLAQAKLDTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAA 131

Query: 201 D 201
            
Sbjct: 132 R 132

>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytosine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (119), Expect = 1e-08
 Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 19/117 (16%)

Query: 90  EWHEYFMASAFLVAKRSKD-PVTRVGAVIVN-EDNKIVGTGYNGMPIGCSDDEFPWDKNT 147
           +W +  M  A+  A          +G  ++N +D  ++G G+N      S          
Sbjct: 7   KWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSA--------- 57

Query: 148 HDELDMCHAEMNAILNKNSADTKRCK---LYTSLFPCNECAKVIIQSGIKEVIYMCD 201
                  H E++ + N    + K  K   LYT+L PC+ C   II  GI   +   +
Sbjct: 58  -----TLHGEISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGEN 109

>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Length = 151

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 12/110 (10%)

Query: 92  HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
            EYF+  A   AKR+ +     VGA+IV E             I         +      
Sbjct: 3   KEYFLKVALREAKRAFEKGEVPVGAIIVKEGE-----------IISKAHNSVEELKDPTA 51

Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
                A   A    N+   + C+LY +L PC  C+  ++ S I++VI+  
Sbjct: 52  HAEMLAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSA 101

>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 12/110 (10%)

Query: 92  HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
             +FM  A + A+ + +     +GAV+V +             +         + N    
Sbjct: 3   RTHFMELALVEARSAGERDEVPIGAVLVLDGR-----------VIARSGNRTRELNDVTA 51

Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
                    A             LY +L PC  CA  I  + I+ + Y  
Sbjct: 52  HAEIAVIRMACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGA 101

>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Guanine deaminase GuaD
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.0 bits (108), Expect = 3e-07
 Identities = 26/112 (23%), Positives = 33/112 (29%), Gaps = 13/112 (11%)

Query: 92  HEYFMASAFLVAKRSKDPVTR--VGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHD 149
           HE F+  A  +A    +       GAVIV +             I           N   
Sbjct: 5   HETFLKRAVTLACEGVNAGIGGPFGAVIVKD-----------GAIIAEGQNNVTTSNDPT 53

Query: 150 ELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCD 201
                 A   A     +     C LYTS  PC  C   I  +  K V Y  +
Sbjct: 54  AHAEVTAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAE 105

>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 92  HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDE 150
           HEY+M  A  +AKR+ D     VGAV+V+ +  I       +                  
Sbjct: 7   HEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGG 66

Query: 151 LDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMC 200
           L M +  +               LY +L PC  CA  +I S I  V++  
Sbjct: 67  LVMQNYRL-----------IDATLYVTLEPCVMCAGAMIHSRIGRVVFGA 105

>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 17/115 (14%)

Query: 92  HEYFMASAFLVAKRSK---DPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTH 148
            EY+M  A  +AK+ +   +    VGAV+V +   +    +       ++         H
Sbjct: 2   EEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAH 61

Query: 149 DELDMCHAEMNAILNKNSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ 203
            E    +  +    +                    CA++II SGIK V       
Sbjct: 62  AEGADIYVTLEPCSHYG--------------KTPPCAELIINSGIKRVFVAMRDP 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1wkqa_	158	Guanine deaminase GuaD {Bacillus subtilis [TaxId:	99.96
d2a8na1	130	Cytidine and deoxycytidylate deaminase CodA {Agrob	99.96
d1p6oa_	156	Cytosine deaminase {Baker's yeast (Saccharomyces c	99.96
d1wwra1	151	tRNA adenosine deaminase TadA {Aquifex aeolicus [T	99.96
d1z3aa1	156	tRNA adenosine deaminase TadA {Escherichia coli [T	99.96
d2b3ja1	151	tRNA adenosine deaminase TadA {Staphylococcus aure	99.95
d1vq2a_	193	Deoxycytidylate deaminase {Bacteriophage T4 [TaxId	99.95
d2g84a1	189	Putative deaminase NE0047 {Nitrosomonas europaea [	99.95
d2hxva2	147	Riboflavin biosynthesis protein RibD {Thermotoga m	99.95
d2b3za2	145	Riboflavin biosynthesis protein RibD {Bacillus sub	99.93
d1vq2a_	193	Deoxycytidylate deaminase {Bacteriophage T4 [TaxId	99.61
d2a8na1	130	Cytidine and deoxycytidylate deaminase CodA {Agrob	99.54
d1wwra1	151	tRNA adenosine deaminase TadA {Aquifex aeolicus [T	99.53
d1p6oa_	156	Cytosine deaminase {Baker's yeast (Saccharomyces c	99.52
d1wkqa_	158	Guanine deaminase GuaD {Bacillus subtilis [TaxId:	99.51
d2hxva2	147	Riboflavin biosynthesis protein RibD {Thermotoga m	99.48
d2b3ja1	151	tRNA adenosine deaminase TadA {Staphylococcus aure	99.47
d1z3aa1	156	tRNA adenosine deaminase TadA {Escherichia coli [T	99.46
d2b3za2	145	Riboflavin biosynthesis protein RibD {Bacillus sub	99.39
d2g84a1	189	Putative deaminase NE0047 {Nitrosomonas europaea [	99.33
d2fr5a1	136	mono-domain cytidine deaminase {Mouse (Mus musculu	99.05
d1r5ta_	141	mono-domain cytidine deaminase {Baker's yeast (Sac	98.95
d2d30a1	124	mono-domain cytidine deaminase {Bacillus anthracis	98.95
d1uwza_	130	mono-domain cytidine deaminase {Bacillus subtilis	98.85
d1alna1	150	Two-domain cytidine deaminase {Escherichia coli [T	98.65
d2z3ga1	123	Blasticidin-S deaminase {Aspergillus terreus [TaxI	98.64
d1alna2	144	Two-domain cytidine deaminase {Escherichia coli [T	98.58

>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Guanine deaminase GuaD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=4.9e-31  Score=203.12  Aligned_cols=98  Identities=33%  Similarity=0.489  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----C
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----N  165 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~  165 (207)
                      |++||++|+++|+++.+.  +.||||||| +||+||+.|+|+...            .+|+  +.|||++||+++    +
T Consensus         5 ~~~~M~~Ai~~A~~~~~~g~~~PvGaviv-~~~~ii~~g~n~~~~------------~~~~--t~HAE~~ai~~a~~~~~   69 (158)
T d1wkqa_           5 HETFLKRAVTLACEGVNAGIGGPFGAVIV-KDGAIIAEGQNNVTT------------SNDP--TAHAEVTAIRKACKVLG   69 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSSCEEEEE-ETTEEEEEEECCHHH------------HTCT--TCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhhhcCCCCCEEEEEE-ecccceeeccceeec------------cCCC--cccHHHHHHHHHHHhcC
Confidence            899999999999998653  678999999 589999999998643            2456  899999999986    6


Q ss_pred             CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         166 SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ...+.|++||||+|||+||+++|+|+||+||||+.++++
T Consensus        70 ~~~l~~~tlyvTlEPC~mC~~ai~~agi~~Vvy~~~~~~  108 (158)
T d1wkqa_          70 AYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTD  108 (158)
T ss_dssp             SSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHH
T ss_pred             ccccCCCEEEEEcCCChhHHHHHHhhcCCEEEEEEcCCC
Confidence            788999999999999999999999999999999987653

>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.96  E-value=1.6e-30  Score=194.23  Aligned_cols=98  Identities=26%  Similarity=0.395  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----CC
Q psy6804          92 HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~~  166 (207)
                      +++||++|+++|+++.. ++.||||||| ++|+||++|+|+...            ..|+  +.|||++|+.++    +.
T Consensus         3 ~~~fM~~Al~~A~~a~~~~~~PVGavIV-~~~~ii~~g~n~~~~------------~~~~--~~HaE~~ai~~a~~~~~~   67 (130)
T d2a8na1           3 RTHFMELALVEARSAGERDEVPIGAVLV-LDGRVIARSGNRTRE------------LNDV--TAHAEIAVIRMACEALGQ   67 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHH------------HTCT--TCCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEEEE-ECCeEEEeecccccc------------cccc--cchhHHHHHHHHHHHhCC
Confidence            78999999999999854 5789999999 689999999998643            2345  899999999976    57


Q ss_pred             CCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         167 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ..++|++||||+|||+||+++|+|+||+||||+..+++
T Consensus        68 ~~l~~~tly~T~EPC~mC~~ai~~~gI~rVvyg~~d~~  105 (130)
T d2a8na1          68 ERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPK  105 (130)
T ss_dssp             SCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTT
T ss_pred             cCCCCCEEecccccCHHHHHHHHHhccCEEEEEEcCCC
Confidence            78899999999999999999999999999999988765

>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytosine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.5e-31  Score=202.80  Aligned_cols=101  Identities=25%  Similarity=0.367  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHHHHHhhCCC-CCCceEEEEEc-CCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccC-
Q psy6804          89 LEWHEYFMASAFLVAKRSKD-PVTRVGAVIVN-EDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKN-  165 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~-~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~-  165 (207)
                      ..||++||++|+++|+++.. ++.|||||||+ ++|+||+.|+|+...            ..|+  +.|||++||.++. 
T Consensus         6 ~~~D~~~M~~A~~~A~~a~~~g~~PvGaviV~~~~g~Iia~g~N~~~~------------~~~~--~~HAE~~Ai~~a~~   71 (156)
T d1p6oa_           6 SKWDQKGMDIAYEEAALGYKEGGVPIGGCLINNKDGSVLGRGHNMRFQ------------KGSA--TLHGEISTLENCGR   71 (156)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTTSCCCEEEEEETTTCCEEEEEECCHHH------------HTCS--SCCHHHHHHHHHCS
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEEeCCCEEEEEEcccccc------------cccc--ccchHHHHHHHHhc
Confidence            47899999999999999874 57899999996 689999999998643            2345  8999999999863 


Q ss_pred             --CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCC
Q psy6804         166 --SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ  203 (207)
Q Consensus       166 --~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~  203 (207)
                        +..++|++||||+|||+||+++|+++||+||||+.+++
T Consensus        72 ~~~~~l~~~tlyvTlEPC~mC~~ai~~~gI~rVv~G~~~~  111 (156)
T d1p6oa_          72 LEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVN  111 (156)
T ss_dssp             CCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSS
T ss_pred             cccccccceEEEeeccCCHHHHHHHHHhCCCEEEEcCCCC
Confidence              33468999999999999999999999999999997654

>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.96  E-value=1.5e-30  Score=199.20  Aligned_cols=98  Identities=34%  Similarity=0.537  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----CC
Q psy6804          92 HEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~~  166 (207)
                      ||+||++|+++|+++.. ++.||||||| ++|++|+.|+|....            ..|+  +.|||++||.++    +.
T Consensus         3 ~e~fM~~Ai~~A~~a~~~~~~pVGaVIV-~~~~ii~~g~n~~~~------------~~~~--~~HAE~~ai~~a~~~~~~   67 (151)
T d1wwra1           3 KEYFLKVALREAKRAFEKGEVPVGAIIV-KEGEIISKAHNSVEE------------LKDP--TAHAEMLAIKEACRRLNT   67 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHH------------HTCT--TCCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhhcCCCCEEEEEE-ECCeeeeeecccccc------------cCcc--hhhHHHHHHHHHHHhhCc
Confidence            89999999999999854 6789999999 589999999998643            2345  899999999986    67


Q ss_pred             CCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCC
Q psy6804         167 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ..++|+|||||+|||+||+++|+|+||+||||+..+++
T Consensus        68 ~~l~~~tlY~TlEPC~mC~~ai~~~~I~rVvyg~~d~~  105 (151)
T d1wwra1          68 KYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKK  105 (151)
T ss_dssp             SCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTT
T ss_pred             cccCCcEeeecccCCcHHHHHHHHhcCCeEEEEeecCC
Confidence            78899999999999999999999999999999987765

>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.2e-29  Score=195.20  Aligned_cols=100  Identities=35%  Similarity=0.553  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----C
Q psy6804          91 WHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----N  165 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----~  165 (207)
                      .|++||++|+++|+++.. ++.||||||| +||+||++|+|....            ..|+  +.|||++||.++    +
T Consensus         6 ~~e~~M~~Ai~~A~~a~~~~~~pvGaViv-~~g~Iia~g~n~~~~------------~~~~--~~HAE~~ai~~a~~~~~   70 (156)
T d1z3aa1           6 SHEYWMRHALTLAKRAWDEREVPVGAVLV-HNNRVIGEGWNRPIG------------RHDP--TAHAEIMALRQGGLVMQ   70 (156)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHH------------HTCT--TCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCEEEEEE-ECCeEEEEeeccccc------------cCcc--hhhHHHHhHHHHHhhcc
Confidence            388999999999999764 5789999999 599999999998643            2355  899999999875    6


Q ss_pred             CCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         166 SADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      ...+.+++||+|+|||+||+++|+|+||+||||+..+++.
T Consensus        71 ~~~l~~~~lytT~ePC~mC~~aii~~gI~rVvyg~~d~~~  110 (156)
T d1z3aa1          71 NYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKT  110 (156)
T ss_dssp             SSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTT
T ss_pred             cccccCceeeeccccccchhhHHHHhCCceEEEEeecCCC
Confidence            7788999999999999999999999999999999988764

>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.95  E-value=4.1e-29  Score=191.15  Aligned_cols=101  Identities=31%  Similarity=0.433  Sum_probs=89.3

Q ss_pred             hHHHHHHHHHHHHHhhCCC-CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          90 EWHEYFMASAFLVAKRSKD-PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      +.|++||++|+++|+++.. ++.||||||| ++|++|+.|+|+....            .|+  +.|||++|+.++    
T Consensus         2 ~~D~~fM~~Ai~~A~~a~~~g~~PVGaViV-~~~~ii~~g~~~~~~~------------~~~--~~HAe~~a~~~~~~~~   66 (151)
T d2b3ja1           2 TNDIYFMTLAIEEAKKAAQLGEVPIGAIIT-KDDEVIARAHNLRETL------------QQP--TAHAEHIAIERAAKVL   66 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCCEEEEE-ETTEEEEEEECCHHHH------------TCT--TCCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhcccCCCCEEEEEE-ecccchhhhhcccccc------------Ccc--hhhhhhhhhHHHHHHh
Confidence            5699999999999999865 5889999999 6899999999986442            345  899999999975    


Q ss_pred             CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         165 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       165 ~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +...+++++||+|+|||+||+.+|+|+||+||||+..+++.
T Consensus        67 ~~~~~~~~~ly~t~ePC~mC~~aii~~gI~~Vv~g~~d~~~  107 (151)
T d2b3ja1          67 GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKG  107 (151)
T ss_dssp             TSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTT
T ss_pred             CCCCCCCCeEEEeccchhhhhchhhhhccceEEEEeecCCC
Confidence            56778999999999999999999999999999999988764

>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.95  E-value=1.4e-28  Score=195.20  Aligned_cols=114  Identities=35%  Similarity=0.517  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHhhCCCCCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCC--------------CCCCC--------CC-
Q psy6804          92 HEYFMASAFLVAKRSKDPVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEF--------------PWDKN--------TH-  148 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~--------------~~~~~--------~~-  148 (207)
                      .+.||++|+.+|++|.|++++|||||| +||+||++|+|+.|.|..+...              .....        .. 
T Consensus         3 ~~~~M~~A~~~A~rS~c~~~~VGAVIV-~~~~IIs~G~Ng~p~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (193)
T d1vq2a_           3 ASTVLQIAYLVSQESKCCSWKVGAVIE-KNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGST   81 (193)
T ss_dssp             HHHHHHHHHHHHTTCCCSSBCCEEEEE-ETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC-------------------
T ss_pred             HHHHHHHHHHHHHhCCCCCCCeEEEEE-ECCEEEEEeecCCcCCCCccccchhhhhhhcccchhhhhhcccccccccccc
Confidence            578999999999999999999999999 5899999999999876221000              00000        00 


Q ss_pred             -C---------------CCCCChHHHHHHHcc--CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCCCCC
Q psy6804         149 -D---------------ELDMCHAEMNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQMSY  206 (207)
Q Consensus       149 -~---------------~~~~~HAE~~Ai~~~--~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~~~~  206 (207)
                       .               ....+|||++||.++  .+..+.+++||+|+|||+||+++|+++||++|||+.++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~HAE~nai~~a~~~~~~~~~~~ly~t~~PC~~Ca~~i~~~gI~~V~~~~~~~~~~  157 (193)
T d1vq2a_          82 DRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNK  157 (193)
T ss_dssp             -CEEECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCC
T ss_pred             cccchhhccccccccccCCCCcCHHHHHHHHHHhcCCCCCCceEEecCCCcHHHHHHHHhccCCEEEEEeCCCCcc
Confidence             0               000689999999986  467789999999999999999999999999999998876643

>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.95  E-value=4.9e-29  Score=196.87  Aligned_cols=99  Identities=20%  Similarity=0.283  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhhCCC-CCCceEEEEEcCC-CeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc----
Q psy6804          91 WHEYFMASAFLVAKRSKD-PVTRVGAVIVNED-NKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK----  164 (207)
Q Consensus        91 ~~~~~m~~A~~~a~~s~~-~~~~vGaviv~~~-g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~----  164 (207)
                      .++.+|++|+++|+++.. ++.|||||||++| |+||+.|+|.+..            .+|+  +.|||++||+++    
T Consensus        25 ~~e~~M~~ai~lAr~a~~~g~~P~GaviV~~~~g~Iia~g~N~~~~------------~~dp--t~HAEi~AI~~A~~~~   90 (189)
T d2g84a1          25 APEARMGYVLELVRANIAADGGPFAAAVFERDSGLLIAAGTNRVVP------------GRCS--AAHAEILALSLAQAKL   90 (189)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCCSCEEEEEETTTCBEEEEEECCTTT------------TTCT--TCCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCCEEEEEEECCCCEEEEEEcCCcCc------------CCCC--cccHHHHHHHHHHHHh
Confidence            367799999999999864 5789999999874 8999999999754            3467  999999999875    


Q ss_pred             -----CCCCCCCcEEEEcccChHHHHHHHHHhCCCEEEEEecCC
Q psy6804         165 -----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKQ  203 (207)
Q Consensus       165 -----~~~~~~~~~ly~T~ePC~~C~~ai~~agi~~vvy~~~~~  203 (207)
                           +...+.+++||||+|||+||+++|+|+||+||||+..++
T Consensus        91 ~~~~l~~~~l~~~tlY~TlEPC~MC~~Ai~~a~I~rVvyga~~~  134 (189)
T d2g84a1          91 DTHDLSADGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSD  134 (189)
T ss_dssp             TCSCTTCTTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHH
T ss_pred             hccccccccccCcEEEeccCCChHHHHHHHHhcCCEEEEEeeCC
Confidence                 234567999999999999999999999999999997543

>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=7.2e-28  Score=183.32  Aligned_cols=94  Identities=35%  Similarity=0.498  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhCCC---CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CC
Q psy6804          92 HEYFMASAFLVAKRSKD---PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~---~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~  166 (207)
                      |+.||++|+++|+++..   ++.||||||| +||+||+.|+|....                  ..|||++|+..+  ..
T Consensus         2 he~~M~~Al~~A~~~~~~~~~~~pVGaViV-~~g~IIa~g~n~~~~------------------~~hae~~ai~~a~~~~   62 (147)
T d2hxva2           2 YETFMKRAIELAKKGLGRVNPNPPVGAVVV-KDGRIIAEGFHPYFG------------------GPHAERMAIESARKKG   62 (147)
T ss_dssp             HHHHHHHHHHHHHTTTTTSTTSCCCEEEEE-ETTEEEEEEECCSTT------------------SCCHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHhccccCCCCCcEEEEEE-ECCeEEEeeceeccC------------------CchHHHHHHHHHHHhC
Confidence            78999999999999853   5789999999 589999999998643                  689999999876  46


Q ss_pred             CCCCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCC
Q psy6804         167 ADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQM  204 (207)
Q Consensus       167 ~~~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~  204 (207)
                      ..+.|++||||+|||      +||+++|+|+||+|||||..+++
T Consensus        63 ~~l~~~~lYvTlEPC~~~~~~p~C~~ai~~agi~rVv~g~~dp~  106 (147)
T d2hxva2          63 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPN  106 (147)
T ss_dssp             CCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCC
T ss_pred             CCCCCCEEeeccccccccCCChhhhHHHHhcCcceeeeeccccc
Confidence            778999999999999      55999999999999999998876

>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=2.1e-26  Score=174.78  Aligned_cols=94  Identities=37%  Similarity=0.545  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhhCCC---CCCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHccCCCC
Q psy6804          92 HEYFMASAFLVAKRSKD---PVTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNKNSAD  168 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~---~~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~~~~~  168 (207)
                      |++||++|+++|+++..   +++||||||| +||+||+.|+|+...                  ..|||.+|+..+ ...
T Consensus         2 De~fM~~Al~~A~~a~~~~~~~p~VGaViV-~~g~ii~~g~n~~~~------------------~~hae~~a~~~a-~~~   61 (145)
T d2b3za2           2 EEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLKYG------------------EAHAEVHAIHMA-GAH   61 (145)
T ss_dssp             HHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCSTT------------------SCCHHHHHHHHH-GGG
T ss_pred             hHHHHHHHHHHHHhcccCCCCCCCEEEEEE-ecCceeccccccccC------------------CCchhhHHHHHH-HHH
Confidence            78999999999999864   3568999999 799999999998754                  689999999887 566


Q ss_pred             CCCcEEEEcccCh------HHHHHHHHHhCCCEEEEEecCCCC
Q psy6804         169 TKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKQMS  205 (207)
Q Consensus       169 ~~~~~ly~T~ePC------~~C~~ai~~agi~~vvy~~~~~~~  205 (207)
                      +.+++||+|+|||      +||+++|+|+||+||||+..+++.
T Consensus        62 ~~~~~lyvtlepc~~~~~~~mC~~aIi~agI~rVvyg~~d~~~  104 (145)
T d2b3za2          62 AEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNP  104 (145)
T ss_dssp             GTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCT
T ss_pred             hhccccccccccccccCCcchHHHHHHHcCCCeEEecccccCc
Confidence            7899999999999      599999999999999999988875

>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Deoxycytidylate deaminase
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.61  E-value=1.7e-16  Score=124.88  Aligned_cols=67  Identities=34%  Similarity=0.602  Sum_probs=57.0

Q ss_pred             Chhcccc--CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeeec
Q psy6804           1 MNAILNK--NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSEM   70 (207)
Q Consensus         1 ~nAi~~~--~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~~   70 (207)
                      +|||+++  .+.++.|+|||||+|||+||+++|+++||++|||+.+|++...   .+.++|+++||++.+..
T Consensus       107 ~nai~~a~~~~~~~~~~~ly~t~~PC~~Ca~~i~~~gI~~V~~~~~~~~~~~---~~~~~l~~~gI~v~~i~  175 (193)
T d1vq2a_         107 LNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKP---GWDDILRNAGIEVFNVP  175 (193)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEEECCCHHHHHHHHHHTCCEEEEEECCTTCCT---TTTHHHHHTTCEEEECC
T ss_pred             HHHHHHHHhcCCCCCCceEEecCCCcHHHHHHHHhccCCEEEEEeCCCCccH---HHHHHHHHCCCEEEecC
Confidence            4788884  4678999999999999999999999999999999988765532   26789999999998743

>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.54  E-value=2.7e-15  Score=110.85  Aligned_cols=56  Identities=23%  Similarity=0.408  Sum_probs=47.4

Q ss_pred             CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhcccee
Q psy6804           8 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKV   64 (207)
Q Consensus         8 ~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI   64 (207)
                      +..++.|+|||+|+|||+||+++|+++||++|||+..+++....+. +.+++.+.++
T Consensus        66 ~~~~l~~~tly~T~EPC~mC~~ai~~~gI~rVvyg~~d~~~g~~gs-~~~l~~~~~l  121 (130)
T d2a8na1          66 GQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVES-GVRFFSQPTC  121 (130)
T ss_dssp             TCSCCTTCEEEEEECCBHHHHHHHHHTTCSEEEEEECCTTTBCSSS-TTCGGGSTTC
T ss_pred             CCcCCCCCEEecccccCHHHHHHHHHhccCEEEEEEcCCCCCCccc-hhhhhcCCCC
Confidence            5678999999999999999999999999999999999887765444 5667766554

>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.53  E-value=3.3e-15  Score=113.08  Aligned_cols=63  Identities=25%  Similarity=0.440  Sum_probs=50.6

Q ss_pred             hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804           2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH   65 (207)
Q Consensus         2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~   65 (207)
                      +||.++    +..+++|+|||||+|||+||+++|+++||++|||+..+++....+. +..++++.++.
T Consensus        56 ~ai~~a~~~~~~~~l~~~tlY~TlEPC~mC~~ai~~~~I~rVvyg~~d~~~~~~~~-~~~~~~~~~~~  122 (151)
T d1wwra1          56 LAIKEACRRLNTKYLEGCELYVTLEPCIMCSYALVLSRIEKVIFSALDKKHGGVVS-VFNILDEPTLN  122 (151)
T ss_dssp             HHHHHHHHHHTCSCCTTEEEEESSCCBHHHHHHHHHTTCSEEEESSCCTTTBTTTT-SCCGGGCTTCS
T ss_pred             HHHHHHHHhhCccccCCcEeeecccCCcHHHHHHHHhcCCeEEEEeecCCCCcccc-HHHHHhhhhcC
Confidence            455553    5678999999999999999999999999999999998887654443 55677766553

>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytosine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=3.3e-15  Score=113.56  Aligned_cols=65  Identities=20%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             Chhcccc---CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeeee
Q psy6804           1 MNAILNK---NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWSE   69 (207)
Q Consensus         1 ~nAi~~~---~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~~   69 (207)
                      +|||.++   .+.++.|+|||||+|||+||+++|+++||++|||+..++..   + .+..+|...++.+...
T Consensus        63 ~~Ai~~a~~~~~~~l~~~tlyvTlEPC~mC~~ai~~~gI~rVv~G~~~~~~---~-~g~~~L~~~~~~v~~v  130 (156)
T d1p6oa_          63 ISTLENCGRLEGKVYKDTTLYTTLSPCDMCTGAIIMYGIPRCVVGENVNFK---S-KGEKYLQTRGHEVVVV  130 (156)
T ss_dssp             HHHHHHHCSCCHHHHTTEEEEEEECCCHHHHHHHHHHTCCEEEEEESSSCC---C-THHHHHHHTTCEEEEC
T ss_pred             HHHHHHHhccccccccceEEEeeccCCHHHHHHHHHhCCCEEEEcCCCCCC---c-chHHHhhcCCeEEeee
Confidence            3677764   23457899999999999999999999999999999754322   2 3688999999988753

>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Guanine deaminase GuaD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.51  E-value=9.6e-16  Score=116.86  Aligned_cols=48  Identities=29%  Similarity=0.462  Sum_probs=41.6

Q ss_pred             hhcccc----CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCC
Q psy6804           2 NAILNK----NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQK   49 (207)
Q Consensus         2 nAi~~~----~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~   49 (207)
                      +||+++    +..++.|+|||||+|||+||+++|+++||++|||+.++++..
T Consensus        59 ~ai~~a~~~~~~~~l~~~tlyvTlEPC~mC~~ai~~agi~~Vvy~~~~~~~~  110 (158)
T d1wkqa_          59 TAIRKACKVLGAYQLDDCILYTSCEPCPMCLGAIYWARPKAVFYAAEHTDAA  110 (158)
T ss_dssp             HHHHHHHHHHTSSSCTTEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHHHH
T ss_pred             HHHHHHHHhcCccccCCCEEEEEcCCChhHHHHHHhhcCCEEEEEEcCCCcc
Confidence            466653    567899999999999999999999999999999999877543

>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=7.2e-15  Score=110.71  Aligned_cols=65  Identities=25%  Similarity=0.380  Sum_probs=53.7

Q ss_pred             hhcccc--CCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           2 NAILNK--NSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         2 nAi~~~--~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      +||.++  .+.++.|+|||||+|||      +||+++|+++||++|||+..|++.. .+ .+.++|.++||++..
T Consensus        53 ~ai~~a~~~~~~l~~~~lYvTlEPC~~~~~~p~C~~ai~~agi~rVv~g~~dp~~~-~~-~~~~~l~~~~i~V~~  125 (147)
T d2hxva2          53 MAIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPV-SG-NGVEKFRNHGIEVIE  125 (147)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCCHHHHHHHHTCCEEEEEECCCCGG-GC-CHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHhCCCCCCCEEeeccccccccCCChhhhHHHHhcCcceeeeeccccccc-cc-hhhhhhhcCCCEEEe
Confidence            455552  45789999999999999      5599999999999999999988653 33 478899999998876

>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.47  E-value=1.5e-14  Score=109.38  Aligned_cols=58  Identities=28%  Similarity=0.439  Sum_probs=51.7

Q ss_pred             CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeee
Q psy6804           8 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHY   66 (207)
Q Consensus         8 ~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v   66 (207)
                      +...+.|++||+|+|||+||+.+|+++||++|||+..+++....+. +.++|++.|+..
T Consensus        67 ~~~~~~~~~ly~t~ePC~mC~~aii~~gI~~Vv~g~~d~~~~~~g~-~~~~l~~~~i~~  124 (151)
T d2b3ja1          67 GSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGS-LMNLLQQSNFNH  124 (151)
T ss_dssp             TSSCCTTEEEEEEECCCHHHHHHHHHTTCSEEEEEECCTTTCTBTT-SCBTTSCTTSSC
T ss_pred             CCCCCCCCeEEEeccchhhhhchhhhhccceEEEEeecCCCCccCc-chhhhhhcCCCC
Confidence            5567999999999999999999999999999999999998876655 788999999863

>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.7e-14  Score=109.62  Aligned_cols=57  Identities=23%  Similarity=0.356  Sum_probs=49.6

Q ss_pred             CCCCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceee
Q psy6804           8 NSADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVH   65 (207)
Q Consensus         8 ~~~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~   65 (207)
                      .+.++.++++|+|+|||+||+++|+++||++|||+..+++....+. +..+|.+.++.
T Consensus        70 ~~~~l~~~~lytT~ePC~mC~~aii~~gI~rVvyg~~d~~~~~~g~-~~~~l~~~~~~  126 (156)
T d1z3aa1          70 QNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGS-LMDVLHHPGMN  126 (156)
T ss_dssp             TSSCCTTCEEEEEECCCHHHHHHHHHHTCSEEEEEECCTTTCTBTT-SCBCTTCTTCS
T ss_pred             ccccccCceeeeccccccchhhHHHHhCCceEEEEeecCCCcccCc-HHHHHHhCCCC
Confidence            5668899999999999999999999999999999999988766654 67788887754

>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.39  E-value=6.7e-14  Score=104.99  Aligned_cols=65  Identities=29%  Similarity=0.428  Sum_probs=55.1

Q ss_pred             hhccccCCCCCCCcEEEEcCCCc------HHHHHHHHHhCCCEEEEeccCCCCCccchhhhhhhccceeeeee
Q psy6804           2 NAILNKNSADTKRCKLYTSLFPC------NECAKVIIQSGIKEVIYMCDKHKQKPATIASKRMFDAAKVHYWS   68 (207)
Q Consensus         2 nAi~~~~~~~~~g~~lYvT~~PC------~~Ca~~i~~~gI~~vv~~~~~~~~~~~~~~~~~~l~~~gI~v~~   68 (207)
                      +|+.++ ...+.|++||||+|||      +||+++|+++||++|||+..+++....+. +.++|+++||++..
T Consensus        53 ~a~~~a-~~~~~~~~lyvtlepc~~~~~~~mC~~aIi~agI~rVvyg~~d~~~~~~g~-~~~~l~~~gieV~~  123 (145)
T d2b3za2          53 HAIHMA-GAHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGR-GISMMKEAGIEVRE  123 (145)
T ss_dssp             HHHHHH-GGGGTTCEEEESSCCCCCCSSSCCHHHHHHHHTCCEEEESSCCSCTTTTTH-HHHHHHTTTCEEEE
T ss_pred             HHHHHH-HHHhhccccccccccccccCCcchHHHHHHHcCCCeEEecccccCccccCc-HHHHHHcCCCEEEc
Confidence            355554 3467899999999999      59999999999999999999998766554 78999999999875

>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Putative deaminase NE0047
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.33  E-value=1.5e-13  Score=107.36  Aligned_cols=38  Identities=26%  Similarity=0.524  Sum_probs=34.3

Q ss_pred             CCCCCcEEEEcCCCcHHHHHHHHHhCCCEEEEeccCCC
Q psy6804          10 ADTKRCKLYTSLFPCNECAKVIIQSGIKEVIYMCDKHK   47 (207)
Q Consensus        10 ~~~~g~~lYvT~~PC~~Ca~~i~~~gI~~vv~~~~~~~   47 (207)
                      ..+.|+|||||+|||+||+.+|+++||++|||+..+++
T Consensus        98 ~~l~~~tlY~TlEPC~MC~~Ai~~a~I~rVvyga~~~d  135 (189)
T d2g84a1          98 DGLPACELVTSAEPCVMCFGAVIWSGVRSLVCAARSDD  135 (189)
T ss_dssp             TTSCCEEEEEEECCCHHHHHHHHHHCCSEEEEEECHHH
T ss_pred             ccccCcEEEeccCCChHHHHHHHHhcCCEEEEEeeCCC
Confidence            45679999999999999999999999999999987643

>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=6.1e-10  Score=82.10  Aligned_cols=98  Identities=24%  Similarity=0.289  Sum_probs=71.6

Q ss_pred             hhHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--
Q psy6804          89 LEWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--  164 (207)
Q Consensus        89 ~~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--  164 (207)
                      +++.+..+..|.++.+++..|  +++|||+|.+.||+|+ .|.|-....            ...  ++|||..||..+  
T Consensus         2 p~~~~~l~~~A~~a~~~AyaPYS~f~VGAa~~~~dG~i~-~G~NvEnas------------y~~--~iCAEr~Ai~~a~~   66 (136)
T d2fr5a1           2 PEHVQRLLLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENAC------------YPL--GVCAERTAIQKAIS   66 (136)
T ss_dssp             CHHHHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCcCCccCCcEEEEEEeCCCCEE-EEEeecccc------------ccc--ccchhheeeeeeec
Confidence            355677889999999999987  7899999999999987 999975431            011  799999999986  


Q ss_pred             -CCCCCCCcEEEEc------ccChHHHHHHHHHhCCCEEEEEecC
Q psy6804         165 -NSADTKRCKLYTS------LFPCNECAKVIIQSGIKEVIYMCDK  202 (207)
Q Consensus       165 -~~~~~~~~~ly~T------~ePC~~C~~ai~~agi~~vvy~~~~  202 (207)
                       +...+. ....++      ..||.+|.+.|.+.+-...+|....
T Consensus        67 ~g~~~~~-~~~~~~~~~~~~~~PCG~CRQ~l~E~~~~~~i~~~~~  110 (136)
T d2fr5a1          67 EGYKDFR-AIAISSDLQEEFISPCGACRQVMREFGTDWAVYMTKP  110 (136)
T ss_dssp             TTCCCEE-EEEEEESCSSSCCCCCHHHHHHHHHTCSSCEEEEECT
T ss_pred             cCCccEE-EEEeecccCCCCCCcchhhhHHHHhhCCCceEEEECC
Confidence             222221 122232      2499999999999886655565443

>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=3.7e-09  Score=78.21  Aligned_cols=90  Identities=23%  Similarity=0.316  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--C
Q psy6804          90 EWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--N  165 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~  165 (207)
                      +.-+...+.|++++.++..|  +++|||++...+|+|+ +|.|-....            ...  ++|||..||.++  .
T Consensus         8 ~~~~~L~~~a~~a~~~ayaPYS~f~VGAAl~t~~G~I~-~G~NvEnas------------~~~--~lCAEr~Ai~~a~~~   72 (141)
T d1r5ta_           8 RQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENAS------------YSN--CICAERSAMIQVLMA   72 (141)
T ss_dssp             HHHHHHHHHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCcCCccCCcEEEEEEeCCCCEE-EEEeecccc------------ccc--ccCHHHHHHHHHHHh
Confidence            34556788899999999987  7899999999999987 899975331            112  799999999876  2


Q ss_pred             -CCCCCCcEEEE------cccChHHHHHHHHHhCCC
Q psy6804         166 -SADTKRCKLYT------SLFPCNECAKVIIQSGIK  194 (207)
Q Consensus       166 -~~~~~~~~ly~------T~ePC~~C~~ai~~agi~  194 (207)
                       ........+.+      ...||.+|.+.|.+.+-+
T Consensus        73 g~~~~~~~~vv~~~~~~~~~sPCG~CRQ~l~E~~~~  108 (141)
T d1r5ta_          73 GHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVK  108 (141)
T ss_dssp             TCCSCCCEEEEEESCSSSCCCCCHHHHHHHHTTSCT
T ss_pred             cCCccceEEEEeecCCCCCCCchHHHHHHHHHhcCC
Confidence             22322222222      145999999999997643

>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Bacillus anthracis [TaxId: 1392]

Probab=98.95  E-value=2.7e-09  Score=77.33  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NS  166 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~  166 (207)
                      ++..++.|+++.+++..|  +++|||+|..+||+|+ .|.|-....            ...  ++|||..||.++   +.
T Consensus         3 ~~~L~~~A~~a~~~ayaPyS~f~VGAal~~~~G~i~-~G~NvEn~s------------~~~--~~CAEr~Ai~~a~~~g~   67 (124)
T d2d30a1           3 SKQLIQEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENAS------------YGL--CNCAERTALFKAVSEGD   67 (124)
T ss_dssp             HHHHHHHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCcCCccCCcEEEEEEeCCCCEE-EEEeecccc------------CCc--ccCHHHHHHHHHHhcCC
Confidence            456899999999999987  7899999999999986 999976431            112  789999999986   22


Q ss_pred             CCCCCcEEEEcc------cChHHHHHHHHHhC
Q psy6804         167 ADTKRCKLYTSL------FPCNECAKVIIQSG  192 (207)
Q Consensus       167 ~~~~~~~ly~T~------ePC~~C~~ai~~ag  192 (207)
                      ..+  ..+.+..      .||.+|.+.|.+.+
T Consensus        68 ~~~--~~i~v~~~~~~~~~PCG~CRQ~l~E~~   97 (124)
T d2d30a1          68 KEF--VAIAIVADTKRPVPPCGACRQVMVELC   97 (124)
T ss_dssp             CCE--EEEEEEESCSSCCCCCHHHHHHHHHHS
T ss_pred             cee--EEEEEEcCCCCccCCchHHHHHHHHhc
Confidence            222  2334443      69999999999875

>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: mono-domain cytidine deaminase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=9.6e-09  Score=74.94  Aligned_cols=93  Identities=18%  Similarity=0.309  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---CCC
Q psy6804          93 EYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---NSA  167 (207)
Q Consensus        93 ~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---~~~  167 (207)
                      +..++.|+++.+++..|  +++|||++.+.+|+|+ .|.|-....            ...  +.+||..||..+   +..
T Consensus         4 ~~L~~~A~~a~~~ayaPyS~f~VGAa~~~~~G~i~-~G~NvEnas------------~~~--~~CAEr~Ai~~a~~~g~~   68 (130)
T d1uwza_           4 QELITEALKARDMAYAPYSKFQVGAALLTKDGKVY-RGCNIENAA------------YSM--CNCAEATALFKAVSEGDT   68 (130)
T ss_dssp             HHHHHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSS------------GGG--CBCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHhCcCCccCCcEEEEEEeCCCCEE-EEeeecccc------------ccc--cccceehhhHHHHHhhhc
Confidence            45788899999999887  7899999999999987 999976432            011  789999999876   333


Q ss_pred             CCCCcEEEEc----ccChHHHHHHHHHhCC-CEEEEEe
Q psy6804         168 DTKRCKLYTS----LFPCNECAKVIIQSGI-KEVIYMC  200 (207)
Q Consensus       168 ~~~~~~ly~T----~ePC~~C~~ai~~agi-~~vvy~~  200 (207)
                      .+.-..+...    ..||.+|.+.|.+.+- ...++..
T Consensus        69 ~~~~i~v~~~~~~~~sPCG~CRQ~l~E~~~~~~~i~l~  106 (130)
T d1uwza_          69 EFQMLAVAADTPGPVSPCGACRQVISELCTKDVIVVLT  106 (130)
T ss_dssp             CEEEEEEEESCSSSCCCCHHHHHHHHHHSCTTCEEEEE
T ss_pred             ceeeEEEEcCCCCccCcCHHHHHHHHHhCCCCcEEEEE
Confidence            3322222222    3699999999998753 3334443

>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=3.8e-08  Score=72.89  Aligned_cols=89  Identities=21%  Similarity=0.271  Sum_probs=65.7

Q ss_pred             hHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--C
Q psy6804          90 EWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--N  165 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~  165 (207)
                      ++++..+.++-.++..+..|  +++|||++...+|+|. .|.|-...+-.          -..  ++|||..||..+  .
T Consensus        48 ~~~el~~~llp~Aa~~AyaPyS~F~VGAa~~~~~G~iy-~G~NvE~~nas----------~~~--sicAEr~Ai~~a~~~  114 (150)
T d1alna1          48 DEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGAT----------MQQ--TVHAEQSAISHAWLS  114 (150)
T ss_dssp             CHHHHHHHHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSC----------GGG--CBCHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHhccCCCCCCceEEEEEeCCCCEE-EEEeecccCCc----------cCC--CCCHHHHHHHHHHhc
Confidence            34566667677777888877  8999999999999976 99997643200          011  799999999976  2


Q ss_pred             CCCCCCcEEEEcccChHHHHHHHHHhC
Q psy6804         166 SADTKRCKLYTSLFPCNECAKVIIQSG  192 (207)
Q Consensus       166 ~~~~~~~~ly~T~ePC~~C~~ai~~ag  192 (207)
                      +.. +=-.++++..||.+|.+.|.+.+
T Consensus       115 G~~-~i~~i~v~~sPCG~CRQ~m~E~~  140 (150)
T d1alna1         115 GEK-ALAAITVNYTPCGHCRQFMNELN  140 (150)
T ss_dssp             TCC-CEEEEEESSCCCHHHHHHHTTBT
T ss_pred             CCC-ceeEEEEEcCCChhHHHHHHHhc
Confidence            221 23557889999999999998754

>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Blasticidin-S deaminase
species: Aspergillus terreus [TaxId: 33178]

Probab=98.64  E-value=1.8e-07  Score=67.24  Aligned_cols=92  Identities=16%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc---
Q psy6804          90 EWHEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK---  164 (207)
Q Consensus        90 ~~~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~---  164 (207)
                      +.++.+++.|.+.. .+..+  +++|||+|+.+||+|+ +|.|-..-               +. .+|||..||.++   
T Consensus         4 ~~~~~Li~~A~~~~-~~~~~~s~f~VGAa~l~~~G~i~-~G~NvEN~---------------s~-glCAEr~Ai~~a~~~   65 (123)
T d2z3ga1           4 QEESTLIERATATI-NSIPISEDYSVASAALSSDGRIF-TGVNVYHF---------------TG-GPCAELVVLGTAAAA   65 (123)
T ss_dssp             HHHHHHHHHHHHHH-HHSCCCSSSCEEEEEEETTSCEE-EEECCCCT---------------TT-CCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH-hcCCCCCCCCEEEEEEeCCCCEE-EEEcccCC---------------CC-ccchhhhHhhhhhhc
Confidence            45677888887654 34444  6899999999999987 99996521               11 589999999876   


Q ss_pred             CCCCCCCcEEEEc-----ccChHHHHHHHHHhCCCEEEEE
Q psy6804         165 NSADTKRCKLYTS-----LFPCNECAKVIIQSGIKEVIYM  199 (207)
Q Consensus       165 ~~~~~~~~~ly~T-----~ePC~~C~~ai~~agi~~vvy~  199 (207)
                      +...+....+...     ..||.+|.+.|.+.+-+.-++.
T Consensus        66 g~~~i~~i~~v~~~~~~~~sPCG~CRQ~l~Ef~~~~~vi~  105 (123)
T d2z3ga1          66 AAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIV  105 (123)
T ss_dssp             TCCCEEEEEEEETTTTEEECCCHHHHHHHHHHCTTCEEEE
T ss_pred             CCCceEEEEEEEcCCCCcCCccHHHHHHHHHhCCCCeEEE
Confidence            2222221111211     3699999999999754333343

>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Cytidine deaminase
domain: Two-domain cytidine deaminase
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.4e-07  Score=69.48  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhhCCCC--CCceEEEEEcCCCeEEEEeeeCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHcc--CCC
Q psy6804          92 HEYFMASAFLVAKRSKDP--VTRVGAVIVNEDNKIVGTGYNGMPIGCSDDEFPWDKNTHDELDMCHAEMNAILNK--NSA  167 (207)
Q Consensus        92 ~~~~m~~A~~~a~~s~~~--~~~vGaviv~~~g~ii~~g~N~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~~--~~~  167 (207)
                      ++.+++.|++++++|..|  +.+|||+|.++||+|+ .|+|-....            .++  ++|||..||..+  .+.
T Consensus        38 ~d~L~~~A~~aa~~ayaPYS~~~vGaal~~~~G~i~-~G~nvEnaa------------~~~--slcAE~~Ai~~av~~G~  102 (144)
T d1alna2          38 GDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAA------------FNP--TLPPLQGALILLNLKGY  102 (144)
T ss_dssp             SSHHHHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTT------------STT--CBCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccCCCCCCcceEEEEeCCCCEE-EEeeeeccc------------cCC--CccHHHHHHHHHHHcCC
Confidence            456899999999999987  7899999999999987 999976431            234  899999999876  455


Q ss_pred             CCCCcEEEEc-------ccChHHHHHHHHHhCCCEE
Q psy6804         168 DTKRCKLYTS-------LFPCNECAKVIIQSGIKEV  196 (207)
Q Consensus       168 ~~~~~~ly~T-------~ePC~~C~~ai~~agi~~v  196 (207)
                      .+.+....+.       ..||.+|...|...+-..+
T Consensus       103 ~~~~I~~~v~ve~~~~~is~~~~~r~~l~~~~~~~~  138 (144)
T d1alna2         103 DYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSI  138 (144)
T ss_dssp             CGGGEEEEEEEECTTCSSCCHHHHHHHHHHHTCCCE
T ss_pred             CccCEEEEEEEeCCCCCCCcHHHHHHHHHHhcCCCC
Confidence            5445443333       2478888888887664433