Psyllid ID: psy6810

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MLSRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA
Secondary Structure (PSIPRED)
cccHHccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHEEEccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHEEcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mlsrfvmqhgkfdtigpvslgepiwvsdMAKCAQVMNRSVVLTWVMYQshragkirtndKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKsitpdqdkQSIKKCISDLKALAARA
Flexible Loop (DISEMBL)
mlsrfvmqhgkfdtigpvslgEPIWVSDMAKCAQVMNRSVVLTWVMYQShragkirtndkLASLKGAIenelwnqeRSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKsitpdqdkqsikKCISDLKALAARA
Low Complexity Region (SEG)
MLSRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA
Disordered region (IsUnstruct)
****FVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSIT**********************
Disordered Region (DISOPRED)
*LSRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELW****SKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQ*RISQKHMVSWVVSHVL*********QSIKKCISDLKALAA**
Disordered Region (DISEMBL)
********HGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA
Disordered Region (DISPRO)
*LSRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTWVMYQSHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q94516	243	ATP synthase subunit b, m	yes	N/A	0.642	0.444	0.518	3e-25
P24539	256	ATP synthase subunit b, m	yes	N/A	0.976	0.640	0.326	1e-19
Q9CQQ7	256	ATP synthase subunit b, m	yes	N/A	0.625	0.410	0.419	3e-18
Q5RFH9	256	ATP synthase subunit b, m	yes	N/A	0.625	0.410	0.419	3e-18
P19511	256	ATP synthase subunit b, m	yes	N/A	0.625	0.410	0.409	8e-18
P13619	256	ATP synthase subunit b, m	yes	N/A	0.625	0.410	0.390	2e-16

>sp|Q94516|AT5F1_DROME ATP synthase subunit b, mitochondrial OS=Drosophila melanogaster GN=ATPsyn-b PE=2 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query: 60  KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQA 119
           +L  L  AIE E   Q R+    +L EAK+ENI +QLEA FRERA+  Y +VK RL+YQ 
Sbjct: 132 ELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQV 191

Query: 120 ALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR 167
               ++RR+SQKHMV+W+ ++VL SI+P Q+K+++ KCI+DL ALA R
Sbjct: 192 ECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALR 239

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Drosophila melanogaster (taxid: 7227)

>sp|P24539|AT5F1_HUMAN ATP synthase subunit b, mitochondrial OS=Homo sapiens GN=ATP5F1 PE=1 SV=2

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 99/187 (52%), Gaps = 23/187 (12%)

Query: 5   FVMQHGKFDTIGPVSLGEPIWVSDMAK-----CAQVMNRSVVLTWVMYQSHRAGKI---- 55
           F   + K    GP  LG  + +  ++K      A+      VL  ++Y   + G      
Sbjct: 64  FQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVADF 123

Query: 56  --RTND-KLASL-----------KGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFR 101
             + N+ KLA L           + AI+ E   Q   + +  L++ +R NI M LE  +R
Sbjct: 124 ADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYR 183

Query: 102 ERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDL 161
           ER    Y++VKNRL+Y  +++++ RR  Q+HM++WV  HV++SI+  Q+K++I KCI+DL
Sbjct: 184 ERLYRVYKEVKNRLDYHISVQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADL 243

Query: 162 KALAARA 168
           K LA +A
Sbjct: 244 KLLAKKA 250

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Homo sapiens (taxid: 9606)

>sp|Q9CQQ7|AT5F1_MOUSE ATP synthase subunit b, mitochondrial OS=Mus musculus GN=Atp5f1 PE=1 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 71/105 (67%)

Query: 64  LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
           ++ AI+ E   Q   + +  L++ +R NI + LE  +RER   AY++VKNRL+Y  ++++
Sbjct: 146 IQDAIDMEKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQN 205

Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           + RR  ++HM+ WV  HV+KSI+  Q+K++I KCI DLK LA +A
Sbjct: 206 MMRRKEEEHMIDWVEKHVVKSISVQQEKETIAKCIEDLKLLAKKA 250

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Mus musculus (taxid: 10090)

>sp|Q5RFH9|AT5F1_PONAB ATP synthase subunit b, mitochondrial OS=Pongo abelii GN=ATP5F1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 71/105 (67%)

Query: 64  LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
           ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y   +++
Sbjct: 146 IQNAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHIYVQN 205

Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           + R+  Q+HMV+WV  HV++SI+  Q+K++I KCI+DLK LA +A
Sbjct: 206 MMRQKEQEHMVNWVEKHVVQSISTQQEKETIAKCIADLKLLAKKA 250

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Pongo abelii (taxid: 9601)

>sp|P19511|AT5F1_RAT ATP synthase subunit b, mitochondrial OS=Rattus norvegicus GN=Atp5f1 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 69/105 (65%)

Query: 64  LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
           ++ AI  E   Q   + +  L++ +R NI + LE  +RER   AY++VKNRL+Y  +++ 
Sbjct: 146 IQDAINREKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQD 205

Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           + RR   +HM++WV  HV++SI+  Q+K++I KCI DLK LA +A
Sbjct: 206 MMRRKEGEHMINWVEKHVIQSISAQQEKETIAKCIGDLKMLAKKA 250

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rattus norvegicus (taxid: 10116)

>sp|P13619|AT5F1_BOVIN ATP synthase subunit b, mitochondrial OS=Bos taurus GN=ATP5F1 PE=1 SV=2

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 71/105 (67%)

Query: 64  LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
           ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y  ++++
Sbjct: 146 IQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQN 205

Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           + R+  Q+HM++WV   V++SI+  Q+K++I KCI+DLK L+ +A
Sbjct: 206 MMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKKA 250

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core, and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
110671478	249	putative ATP synthase-like protein [Diap	0.660	0.445	1.0	3e-56
170039307	238	ATP synthase B chain, mitochondrial [Cul	0.654	0.462	0.554	7e-29
215259753	162	mitochondrial ATP synthase B chain [Cule	0.648	0.672	0.559	1e-28
215259855	139	mitochondrial ATP synthase B chain [Cule	0.648	0.784	0.550	3e-28
158302485	236	AGAP001138-PA [Anopheles gambiae str. PE	0.654	0.466	0.545	1e-27
312373023	237	hypothetical protein AND_18381 [Anophele	0.625	0.443	0.561	4e-27
157110513	238	mitochondrial ATP synthase b chain [Aede	0.654	0.462	0.509	6e-26
289742953	236	ATP synthase subunit b [Glossina morsita	0.648	0.461	0.541	1e-25
241680591	264	ATP synthase B chain, putative [Ixodes s	0.678	0.431	0.5	2e-25
67083945	264	putative ATP synthase-like protein [Ixod	0.678	0.431	0.5	2e-25

>gi|110671478|gb|ABG81990.1| putative ATP synthase-like protein [Diaphorina citri]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 58  NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
           NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY
Sbjct: 139 NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 198

Query: 118 QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA
Sbjct: 199 QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 249

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170039307|ref|XP_001847481.1| ATP synthase B chain, mitochondrial [Culex quinquefasciatus] gi|167862882|gb|EDS26265.1| ATP synthase B chain, mitochondrial [Culex quinquefasciatus]

 Score =  132 bits (331), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/110 (55%), Positives = 88/110 (80%)

Query: 59  DKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQ 118
           D +A L  AIE+E   Q R++ Q +L +AK+EN+ +QLEA +RERA+ AY++VK RL+YQ
Sbjct: 128 DNIAQLNQAIEDEKKEQWRAEGQTLLMQAKKENVALQLEAAYRERAMTAYREVKKRLDYQ 187

Query: 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
              +++ RRISQKHMV W+VS+V+KSITPDQ+K+++ KCI+DL A+AAR+
Sbjct: 188 VERQNVDRRISQKHMVDWIVSNVVKSITPDQEKETLNKCIADLGAIAARS 237

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215259753|gb|ACJ64368.1| mitochondrial ATP synthase B chain [Culex tarsalis]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 87/109 (79%)

Query: 59  DKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQ 118
           D +A L  AIE+E   Q R++ Q +L +AK+EN+ +QLEA +RERA+ AY++VK RL+YQ
Sbjct: 52  DNIAQLNQAIEDEKKEQWRAEGQTLLMQAKKENVALQLEAAYRERAMTAYREVKKRLDYQ 111

Query: 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR 167
              +++ RRISQKHMV W+VS+V+KSITPDQ+K+++ KCI+DL A+AAR
Sbjct: 112 VERQNVDRRISQKHMVDWIVSNVVKSITPDQEKETLNKCIADLGAIAAR 160

Source: Culex tarsalis

Species: Culex tarsalis

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|215259855|gb|ACJ64419.1| mitochondrial ATP synthase B chain [Culex tarsalis]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 87/109 (79%)

Query: 59  DKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQ 118
           D +A L  AIE+E   Q R++ Q +L +AK+EN+ +QLEA +RERA+ AY++V+ RL+YQ
Sbjct: 29  DNIAQLNQAIEDEKKEQWRAEGQTLLMQAKKENVALQLEAAYRERAMTAYREVEKRLDYQ 88

Query: 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR 167
              +++ RRISQKHMV W+VS+V+KSITPDQ+K+++ KCI+DL A+AAR
Sbjct: 89  VERQNVDRRISQKHMVDWIVSNVVKSITPDQEKETLNKCIADLGAIAAR 137

Source: Culex tarsalis

Species: Culex tarsalis

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158302485|ref|XP_322024.4| AGAP001138-PA [Anopheles gambiae str. PEST] gi|157012975|gb|EAA01034.4| AGAP001138-PA [Anopheles gambiae str. PEST]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 87/110 (79%)

Query: 59  DKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQ 118
           + +  L  AIE+E   Q R++ Q +L +AK+EN+ +QLEA +RERA+ AY++VK RL+YQ
Sbjct: 126 NNIQQLTQAIEDEKKEQWRAEGQTMLMQAKKENVALQLEAAYRERAMNAYREVKKRLDYQ 185

Query: 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
              +++ RRISQKHMV W+VS+V+KSITPDQ+K+++ KCI+DL ALAAR+
Sbjct: 186 VERQNVDRRISQKHMVDWIVSNVVKSITPDQEKENLNKCIADLGALAARS 235

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373023|gb|EFR20854.1| hypothetical protein AND_18381 [Anopheles darlingi]

 Score =  126 bits (316), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 85/105 (80%)

Query: 64  LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
           L  AIE+E   Q R++ Q +L +AK+EN+ +QLEA +RERA+ AY++VK RL+YQ   ++
Sbjct: 132 LTQAIEDEKKEQWRAEGQTMLMQAKKENVALQLEAAYRERAMNAYREVKKRLDYQVERQN 191

Query: 124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           + RRISQKHMV W+V++V+KSITPDQ+K+++ KCI+DL ALAAR+
Sbjct: 192 VDRRISQKHMVDWIVNNVVKSITPDQEKENLNKCIADLGALAARS 236

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110513|ref|XP_001651134.1| mitochondrial ATP synthase b chain [Aedes aegypti] gi|108878666|gb|EAT42891.1| AAEL005610-PA [Aedes aegypti]

 Score =  122 bits (305), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/110 (50%), Positives = 85/110 (77%)

Query: 59  DKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQ 118
           + +  L  A+E+E   Q R++ Q +L EAK+EN+ +QLEA +RERA+  Y++VK RL+YQ
Sbjct: 128 NNIQQLAQAMEDEKKEQWRAEGQTLLMEAKKENVALQLEAAYRERAMTVYREVKKRLDYQ 187

Query: 119 AALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
              +++ RRISQKHMV W+V +V+KSITP+Q+K+++ +CI+DL A+AARA
Sbjct: 188 VERQNVDRRISQKHMVDWIVKNVVKSITPEQEKETLSRCIADLGAIAARA 237

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742953|gb|ADD20224.1| ATP synthase subunit b [Glossina morsitans morsitans]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 81/109 (74%)

Query: 60  KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQA 119
           +L SLK +IE E   Q R++   +L +AK+EN+ +QLEA FRER +  Y +VK RL+YQ 
Sbjct: 127 ELKSLKDSIEAEKKEQWRAEGSLMLMDAKKENVALQLEAAFRERVMNVYNEVKRRLDYQV 186

Query: 120 ALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
               I+RR+SQKHMV+W+V++VL SITP Q+K ++ KCI+DL ALAARA
Sbjct: 187 ECRHIERRLSQKHMVNWIVNNVLSSITPQQEKDTLNKCIADLNALAARA 235

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241680591|ref|XP_002412695.1| ATP synthase B chain, putative [Ixodes scapularis] gi|215506497|gb|EEC15991.1| ATP synthase B chain, putative [Ixodes scapularis]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 87/120 (72%), Gaps = 6/120 (5%)

Query: 49  SHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAY 108
           S R G I        L+ AI+NE  +Q +++ Q +L+EAKREN+Q+QLEA FR+R +  Y
Sbjct: 151 SFRQGNI------DGLQEAIKNEERSQWQAQGQHMLFEAKRENVQLQLEAEFRKRQMTVY 204

Query: 109 QQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
            +VK RL+Y   +++I RR+ QKHMV W+V++V+KSITP Q+K +++KCI+DLK LAA A
Sbjct: 205 NEVKRRLDYHLEVQNITRRMQQKHMVDWIVNNVVKSITPQQEKDTLQKCIADLKGLAATA 264

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|67083945|gb|AAY66907.1| putative ATP synthase-like protein [Ixodes scapularis]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 87/120 (72%), Gaps = 6/120 (5%)

Query: 49  SHRAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAY 108
           S R G I        L+ AI+NE  +Q +++ Q +L+EAKREN+Q+QLEA FR+R +  Y
Sbjct: 151 SFRQGNI------DGLQEAIKNEERSQWQAQGQHMLFEAKRENVQLQLEAEFRKRQMTVY 204

Query: 109 QQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
            +VK RL+Y   +++I RR+ QKHMV W+V++V+KSITP Q+K +++KCI+DLK LAA A
Sbjct: 205 NEVKRRLDYHLEVQNITRRMQQKHMVDWIVNNVVKSITPQQEKDTLQKCIADLKGLAATA 264

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0019644	243	ATPsyn-b "ATP synthase, subuni	0.642	0.444	0.518	2.9e-25
UNIPROTKB|F1NSC1	228	ATP5F1 "Uncharacterized protei	0.660	0.486	0.504	5.3e-24
ZFIN|ZDB-GENE-041010-33	252	atp5f1 "ATP synthase, H+ trans	0.678	0.452	0.469	2.9e-23
UNIPROTKB|Q6P8D3	250	atp5f1 "ATP synthase, H+ trans	0.642	0.432	0.5	7.8e-23
UNIPROTKB|Q4R5Q2	256	Q4R5Q2 "Brain cDNA, clone: Qcc	0.642	0.421	0.398	2.7e-20
UNIPROTKB|P24539	256	ATP5F1 "ATP synthase subunit b	0.625	0.410	0.419	4.4e-20
UNIPROTKB|Q5QNZ2	195	ATP5F1 "ATP synthase subunit b	0.625	0.538	0.419	4.4e-20
UNIPROTKB|E2QW06	256	ATP5F1 "Uncharacterized protei	0.642	0.421	0.407	9.2e-20
MGI|MGI:1100495	256	Atp5f1 "ATP synthase, H+ trans	0.642	0.421	0.407	1.5e-19
UNIPROTKB|Q5RFH9	256	ATP5F1 "ATP synthase subunit b	0.642	0.421	0.407	2.5e-19

FB|FBgn0019644 ATPsyn-b "ATP synthase, subunit b" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 56/108 (51%), Positives = 77/108 (71%)

Query:    60 KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQA 119
             +L  L  AIE E   Q R+    +L EAK+ENI +QLEA FRERA+  Y +VK RL+YQ 
Sbjct:   132 ELKVLSDAIEAEKKEQWRADGALLLMEAKKENIALQLEAAFRERAMNVYSEVKRRLDYQV 191

Query:   120 ALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR 167
                 ++RR+SQKHMV+W+ ++VL SI+P Q+K+++ KCI+DL ALA R
Sbjct:   192 ECRHVERRLSQKHMVNWITTNVLASISPQQEKETLNKCIADLSALALR 239

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS;NAS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS;IBA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IBA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IBA

UNIPROTKB|F1NSC1 ATP5F1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 56/111 (50%), Positives = 77/111 (69%)

Query:    58 NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
             N+ + +L+ AIE E   Q R + ++ L++AKR NI M LEA +RER L  Y +VK RL+Y
Sbjct:   114 NEAIKALETAIEEEKKEQWRIEGRSYLFDAKRNNIAMLLEANYRERLLTVYNEVKKRLDY 173

Query:   118 QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             Q AL++++R+  Q HMV WV   V++SITP Q K+SI KCI DLKAL+  A
Sbjct:   174 QVALQNLKRQKEQDHMVQWVEKSVIQSITPQQQKESIAKCILDLKALSKSA 224

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-041010-33 atp5f1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 54/115 (46%), Positives = 79/115 (68%)

Query:    51 RAGKIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQ 110
             +A +++ +  +AS    IENE   Q R + +++L++AKR N+ M LE  +RER      +
Sbjct:   130 KAQEVK-DQSMASYAQGIENEKKEQWRVEGRSMLFDAKRNNVAMLLEINYRERLHMVTNE 188

Query:   111 VKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALA 165
             VK RL+YQ  L+++ RR+ Q+HMV+WV   V+KSITP Q+K+SI KCISDLK LA
Sbjct:   189 VKKRLDYQVELQNLHRRMEQEHMVNWVEQSVVKSITPQQEKESIAKCISDLKVLA 243

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA;IBA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA;IBA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IBA

UNIPROTKB|Q6P8D3 atp5f1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isoform 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 54/108 (50%), Positives = 74/108 (68%)

Query:    61 LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
             L +L+ AIE E   Q R + +  L++AKR N+ M LE  +RER L  Y +VK RL+YQ A
Sbjct:   139 LKNLERAIEEENKEQWRVEGRHHLFDAKRNNVTMLLEINYRERILNVYNEVKKRLDYQVA 198

Query:   121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             L+ +QRR  Q HM++WV  +V++SITP Q K+SI KCI+DLK L+  A
Sbjct:   199 LQHLQRRKEQDHMINWVEKNVIQSITPQQQKESIAKCITDLKVLSKTA 246

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

UNIPROTKB|Q4R5Q2 Q4R5Q2 "Brain cDNA, clone: QccE-10801, similar to human ATP synthase, H+ transporting, mitochondrial F0 complex,subunit b, isoform 1 (ATP5F1)," [Macaca fascicularis (taxid:9541)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 43/108 (39%), Positives = 75/108 (69%)

Query:    61 LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
             +  ++ AI+ E   Q  ++ +  L++ +R NI M LE  +RER    Y++VK+RL+Y  A
Sbjct:   143 IQQMQNAIDTEKSQQALTQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKSRLDYHIA 202

Query:   121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             ++++ RR  Q+HM++WV  HV++SI+ +Q+K+++ KCI+DLK LA +A
Sbjct:   203 VQNMTRRKEQEHMINWVEKHVVQSISAEQEKETVAKCIADLKLLAKKA 250

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|P24539 ATP5F1 "ATP synthase subunit b, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 44/105 (41%), Positives = 72/105 (68%)

Query:    64 LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
             ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y  ++++
Sbjct:   146 IQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQN 205

Query:   124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             + RR  Q+HM++WV  HV++SI+  Q+K++I KCI+DLK LA +A
Sbjct:   206 MMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADLKLLAKKA 250

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IBA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IBA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IBA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=NAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IC;TAS

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

UNIPROTKB|Q5QNZ2 ATP5F1 "ATP synthase subunit b, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 44/105 (41%), Positives = 72/105 (68%)

Query:    64 LKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALES 123
             ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y  ++++
Sbjct:    85 IQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHISVQN 144

Query:   124 IQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             + RR  Q+HM++WV  HV++SI+  Q+K++I KCI+DLK LA +A
Sbjct:   145 MMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADLKLLAKKA 189

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|E2QW06 ATP5F1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/108 (40%), Positives = 73/108 (67%)

Query:    61 LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
             +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y  +
Sbjct:   143 IQQIQDAIDTEKSQQALVQKRHYLFDVQRNNIAMALELTYRERLHRVYREVKNRLDYHIS 202

Query:   121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             ++++ RR  Q+HM++WV  HV++SI+  Q+K++I KCI+DLK LA +A
Sbjct:   203 VQNMMRRKEQEHMINWVEKHVVQSISAQQEKETIAKCIADLKLLAKKA 250

GO:0016887 "ATPase activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

MGI|MGI:1100495 Atp5f1 "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 44/108 (40%), Positives = 72/108 (66%)

Query:    61 LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
             +  ++ AI+ E   Q   + +  L++ +R NI + LE  +RER   AY++VKNRL+Y  +
Sbjct:   143 MKQIQDAIDMEKAQQALVQKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHIS 202

Query:   121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             ++++ RR  ++HM+ WV  HV+KSI+  Q+K++I KCI DLK LA +A
Sbjct:   203 VQNMMRRKEEEHMIDWVEKHVVKSISVQQEKETIAKCIEDLKLLAKKA 250

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISO;IBA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IBA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IBA

UNIPROTKB|Q5RFH9 ATP5F1 "ATP synthase subunit b, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 44/108 (40%), Positives = 72/108 (66%)

Query:    61 LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
             +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y   
Sbjct:   143 IQQIQNAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHIY 202

Query:   121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             ++++ R+  Q+HMV+WV  HV++SI+  Q+K++I KCI+DLK LA +A
Sbjct:   203 VQNMMRQKEQEHMVNWVEKHVVQSISTQQEKETIAKCIADLKLLAKKA 250

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94516	AT5F1_DROME	No assigned EC number	0.5185	0.6428	0.4444	yes	N/A
P24539	AT5F1_HUMAN	No assigned EC number	0.3262	0.9761	0.6406	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam05405	163	pfam05405, Mt_ATP-synt_B, Mitochondrial ATP syntha	6e-22

>gnl|CDD|191268 pfam05405, Mt_ATP-synt_B, Mitochondrial ATP synthase B chain precursor (ATP-synt_B)

 Score = 86.2 bits (214), Expect = 6e-22
 Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 1/106 (0%)

Query: 58  NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
           N    +LK  IE     Q   +   VL+E  +E + ++ EA  RE     Y+++K++L+ 
Sbjct: 58  NLHEKALKERIEYVKKLQSLVEETKVLFEVSKETVALEAEAFERELQAALYREIKSKLDT 117

Query: 118 QAALESIQRRISQKHMVSWVVSHVLKSITPDQ-DKQSIKKCISDLK 162
               ES  R+  Q H+V+WV+S VLK ++P Q  K+++++ I+DL+
Sbjct: 118 LVRKESSVRQREQDHLVNWVISSVLKELSPPQFQKKTLQESIADLE 163

The Fo sector of the ATP synthase is a membrane bound complex which mediates proton transport. It is composed of nine different polypeptide subunits (a, b, c, d, e, f, g F6, A6L). Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG3976|consensus	247		100.0
PF05405	163	Mt_ATP-synt_B: Mitochondrial ATP synthase B chain	100.0
KOG3976|consensus	247		91.42
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	91.28
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	91.16
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	90.76
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	89.97
CHL00019	184	atpF ATP synthase CF0 B subunit	88.98
PRK06231	205	F0F1 ATP synthase subunit B; Validated	88.94
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	82.87
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	80.7

>KOG3976|consensus

Probab=100.00  E-value=1.5e-53  Score=358.46  Aligned_cols=162  Identities=22%  Similarity=0.346  Sum_probs=153.9

Q ss_pred             chhhccccccccchhhhhhHHHHHHHHhhceeeeechHHH-----HHHHHHHHHhh------------------hhhhHH
Q psy6810           3 SRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVL-----TWVMYQSHRAG------------------KIRTND   59 (168)
Q Consensus         3 ~~f~~~~~KTG~tGp~~lg~gl~~y~iSkEiyVin~Eti~-----~~~~y~~~k~g------------------n~~R~~   59 (168)
                      +||+|||+|||+||||++|+||.+|+|||||||||+||+.     ++.+|+++++|                  +++|++
T Consensus        61 ~~f~~l~~ktGVtGpy~~~~gli~yaiSKEiyVie~e~~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~  140 (247)
T KOG3976|consen   61 EWFTFLYTKTGVTGPYLFGAGLIAYAISKELYVIEDESISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQA  140 (247)
T ss_pred             hhhhhhhccccccccchhhHHHHHHHHhcceEEEeecchhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999855     44567778866                  899999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6810          60 KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVS  139 (168)
Q Consensus        60 ~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~  139 (168)
                      |+++++|+||.+++.|+..+.++.|||++|||++||+|++||||++++++|+|+||||||++|+++||.||+||++.|.+
T Consensus       141 ~ik~i~d~id~~~sqq~~~~~~~~lfd~~keni~l~lE~~yre~~~~v~~E~K~~lDy~v~~e~~~rr~eqe~l~ksI~~  220 (247)
T KOG3976|consen  141 HIKAISDAIDTEKSQQALASKTEYLFDVSKENIALQLEATYREQLVRVAKEVKRRLDYWVETEASKRRLEQEQLLKSINS  220 (247)
T ss_pred             HHHHHHHHHhhHHHhHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcC-ChHHHHHHHHHHHHHHHHH
Q psy6810         140 HVLKSI-TPDQDKQSIKKCISDLKAL  164 (168)
Q Consensus       140 ~V~ksI-~pk~ek~~L~qcIadle~L  164 (168)
                      .|.|+. ++++++..|+++|++++.+
T Consensus       221 ~veke~~~k~fqd~~lq~~~~q~~~~  246 (247)
T KOG3976|consen  221 RVEKETSNKKFQDKVLQASIQQIEGL  246 (247)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhcc
Confidence            999988 9999999999999999875

>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=100.00  E-value=3.6e-42  Score=272.06  Aligned_cols=139  Identities=36%  Similarity=0.577  Sum_probs=105.3

Q ss_pred             HHHHHHhhceeeeechHHHHH-----HHHHHHHhh------------------hhhhHHHHHHHHHHHHHHhhhhHHHHH
Q psy6810          24 IWVSDMAKCAQVMNRSVVLTW-----VMYQSHRAG------------------KIRTNDKLASLKGAIENELWNQERSKA   80 (168)
Q Consensus        24 l~~y~iSkEiyVin~Eti~~~-----~~y~~~k~g------------------n~~R~~~i~~vk~~Ie~~k~~q~~~~~   80 (168)
                      |++|++||||||+||||++++     ++++.+++|                  |++|+.|+++++++|+++++++|++++
T Consensus         1 l~~~l~Skei~I~neE~~v~~~f~~f~~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~   80 (163)
T PF05405_consen    1 LFAYLISKEIYIYNEETLVALCFIIFIIFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIEQVKKEQSLVEG   80 (163)
T ss_dssp             ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ChhhHhcCeeeEECchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999998744     334445555                  899999999999999999999999999


Q ss_pred             HHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-ChHHHHHHHHHHHH
Q psy6810          81 QAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVSHVLKSI-TPDQDKQSIKKCIS  159 (168)
Q Consensus        81 ~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~~V~ksI-~pk~ek~~L~qcIa  159 (168)
                      +++||+++|||++|++|++||+|++.+++|+|+||||||++|++.|+.+|+||++||+++|.++| +|+.++++|++||+
T Consensus        81 ~~~l~~~~ke~~~~~~e~~~~~~~~~v~~evk~~Ld~~v~~e~~~r~~~Q~~l~~~v~~~V~~~i~~~k~~~~~l~~~I~  160 (163)
T PF05405_consen   81 TKMLFEASKENVALQLEAFYREQQAAVAQEVKRRLDYWVEYEQSVRRREQKHLVKWVISKVLKSITPPKFQKQILQQCIA  160 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-GGSHCCHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 55669999999999


Q ss_pred             HHH
Q psy6810         160 DLK  162 (168)
Q Consensus       160 dle  162 (168)
                      |||
T Consensus       161 ~lk  163 (163)
T PF05405_consen  161 DLK  163 (163)
T ss_dssp             HHH
T ss_pred             HcC
Confidence            997

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.

>KOG3976|consensus

Probab=91.42  E-value=6.7  Score=34.06  Aligned_cols=29  Identities=28%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             HHhhhcCChHHHHHHHHHHHHHHHHHhhh
Q psy6810         139 SHVLKSITPDQDKQSIKKCISDLKALAAR  167 (168)
Q Consensus       139 ~~V~ksI~pk~ek~~L~qcIadle~La~k  167 (168)
                      ++..++|+++++|+++++|++|...+++.
T Consensus       212 e~l~ksI~~~veke~~~k~fqd~~lq~~~  240 (247)
T KOG3976|consen  212 EQLLKSINSRVEKETSNKKFQDKVLQASI  240 (247)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            45678999999999999999999887754

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=91.28  E-value=6.4  Score=31.36  Aligned_cols=77  Identities=13%  Similarity=0.112  Sum_probs=52.4

Q ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HH---HHHHHhhh-cCChHHHHHHHHHHHHH
Q psy6810          89 RENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VS---WVVSHVLK-SITPDQDKQSIKKCISD  160 (168)
Q Consensus        89 kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~---wVi~~V~k-sI~pk~ek~~L~qcIad  160 (168)
                      .+++.-+++....+-......|+.+.+++.-.-=...|+....+|    ++   -+.+++.+ .+||+.+++++++.|.+
T Consensus        88 i~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~i~~  167 (173)
T PRK13460         88 VAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAK  167 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence            456666677777777778888888888877655555544444433    22   23334444 67999999999999999


Q ss_pred             HHHHh
Q psy6810         161 LKALA  165 (168)
Q Consensus       161 le~La  165 (168)
                      +..++
T Consensus       168 ~~~~~  172 (173)
T PRK13460        168 LGKLS  172 (173)
T ss_pred             ccccC
Confidence            88765

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=91.16  E-value=12  Score=34.43  Aligned_cols=77  Identities=16%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHH---H-hhhcC-ChHHHHHHHHHHHHH
Q psy6810          90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRIS----QKHMVSWVVS---H-VLKSI-TPDQDKQSIKKCISD  160 (168)
Q Consensus        90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~e----Q~~mv~wVi~---~-V~ksI-~pk~ek~~L~qcIad  160 (168)
                      +++.-+++..+-+-......|+.+.++.+-+--...|+..    +.++++-.+.   + +.++| +++.+++++++-|.+
T Consensus        74 ~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~~i~~  153 (445)
T PRK13428         74 EEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDRFLDE  153 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4445555555666666777777777777665555555444    3334333333   3 33478 688889999999999


Q ss_pred             HHHHhh
Q psy6810         161 LKALAA  166 (168)
Q Consensus       161 le~La~  166 (168)
                      |..+.+
T Consensus       154 l~~~~~  159 (445)
T PRK13428        154 LDAMAP  159 (445)
T ss_pred             hhccCC
Confidence            988764

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=90.76  E-value=7.2  Score=31.07  Aligned_cols=73  Identities=15%  Similarity=0.135  Sum_probs=45.7

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHhhh-cCChHHHHHHHHHHHHHHH
Q psy6810          91 NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM-------VSWVVSHVLK-SITPDQDKQSIKKCISDLK  162 (168)
Q Consensus        91 n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m-------v~wVi~~V~k-sI~pk~ek~~L~qcIadle  162 (168)
                      ++.-+++....+-...+..|+.+.++.+-.-=...++....++       +--+..++.+ +++++.++.++++.|.+|+
T Consensus        92 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l~  171 (175)
T PRK14472         92 EGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDLS  171 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence            3344445555555566667777777776655555555444333       2233344444 5699999999999999987


Q ss_pred             H
Q psy6810         163 A  163 (168)
Q Consensus       163 ~  163 (168)
                      .
T Consensus       172 ~  172 (175)
T PRK14472        172 T  172 (175)
T ss_pred             h
Confidence            3

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=89.97  E-value=11  Score=31.81  Aligned_cols=76  Identities=11%  Similarity=0.046  Sum_probs=46.4

Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHH---HHHHhhh-cCChHHHHHHHHHHHHHH
Q psy6810          90 ENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VSW---VVSHVLK-SITPDQDKQSIKKCISDL  161 (168)
Q Consensus        90 En~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~w---Vi~~V~k-sI~pk~ek~~L~qcIadl  161 (168)
                      +++.-+++....+-+..+..|+.+.++.+-.--...++...+.+    ++-   +..++.+ .++++.++.++++-|.+|
T Consensus        78 ~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~~l  157 (246)
T TIGR03321        78 TKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL  157 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Confidence            34444555555556666667777777666554444444444333    222   2233333 569999999999999999


Q ss_pred             HHHh
Q psy6810         162 KALA  165 (168)
Q Consensus       162 e~La  165 (168)
                      ..|.
T Consensus       158 ~~l~  161 (246)
T TIGR03321       158 RTLD  161 (246)
T ss_pred             hcCC
Confidence            8774

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=88.98  E-value=11  Score=30.39  Aligned_cols=75  Identities=11%  Similarity=0.096  Sum_probs=44.4

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHH----hhhcCChHHHHHHHHHHHHHHH
Q psy6810          91 NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM----VSWVVSH----VLKSITPDQDKQSIKKCISDLK  162 (168)
Q Consensus        91 n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m----v~wVi~~----V~ksI~pk~ek~~L~qcIadle  162 (168)
                      ++.-++|...-+-+..+..|+.+.+..+-.-=...++...+.+    ++-.++-    +.++|+|+.+++++++-|.+|.
T Consensus        98 ~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l~  177 (184)
T CHL00019         98 NGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLLG  177 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHHH
Confidence            3333444444444555556666666665555445554444443    3333332    2336799999999999999997


Q ss_pred             HHh
Q psy6810         163 ALA  165 (168)
Q Consensus       163 ~La  165 (168)
                      .+-
T Consensus       178 ~~~  180 (184)
T CHL00019        178 AMK  180 (184)
T ss_pred             hcc
Confidence            664

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=88.94  E-value=12  Score=30.98  Aligned_cols=63  Identities=21%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHH---HHHHHHhhh-cCChHHHHHHHHHHHHHHHH
Q psy6810         101 RERALFAYQQVKNRLEYQAALESIQRRIS----QKHMV---SWVVSHVLK-SITPDQDKQSIKKCISDLKA  163 (168)
Q Consensus       101 req~~~v~~EvK~rLDy~V~~e~~~R~~e----Q~~mv---~wVi~~V~k-sI~pk~ek~~L~qcIadle~  163 (168)
                      -+-......|+.+.+...-+-=...++..    +++++   --+-+++.+ .|+|+.+++.+++.|.+|+.
T Consensus       132 e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~~l~~  202 (205)
T PRK06231        132 SELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEFIRELEA  202 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHccc
Confidence            33344444555555544433333333333    23333   333344444 67999999999999988763

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=82.87  E-value=22  Score=28.33  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=21.9

Q ss_pred             HHHHHHHHhhh-cCChHHHHHHHHHHHHHHH
Q psy6810         133 MVSWVVSHVLK-SITPDQDKQSIKKCISDLK  162 (168)
Q Consensus       133 mv~wVi~~V~k-sI~pk~ek~~L~qcIadle  162 (168)
                      ++--+.+++.+ +|+|+.++.+++..|.++.
T Consensus       141 lA~~~a~kll~~~l~~~~~~~lI~~~i~~~~  171 (173)
T PRK13453        141 LSVLIASKVLRKEISEQDQKALVDKYLKEAG  171 (173)
T ss_pred             HHHHHHHHHHHhHcCHHHHHHHHHHHHHhhC
Confidence            44445555554 6799999999999998764

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=80.70  E-value=28  Score=27.93  Aligned_cols=74  Identities=18%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             hHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHH---Hh-hhcCChHHHHHHHHHHHHHHH
Q psy6810          91 NIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQK----HMVSWVVS---HV-LKSITPDQDKQSIKKCISDLK  162 (168)
Q Consensus        91 n~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~----~mv~wVi~---~V-~ksI~pk~ek~~L~qcIadle  162 (168)
                      ++.-+.+....+.+.....|+.+.++.--.--...|+...+    ++++-.++   ++ .+++||+.++.+++..|.++.
T Consensus       101 ~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~lid~~i~~l~  180 (184)
T PRK13455        101 AAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEVE  180 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence            33334455555556666666666655433333333333222    33333332   33 346799999999999999987


Q ss_pred             HH
Q psy6810         163 AL  164 (168)
Q Consensus       163 ~L  164 (168)
                      ..
T Consensus       181 ~~  182 (184)
T PRK13455        181 AR  182 (184)
T ss_pred             hh
Confidence            54

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2cly_A	214	Subcomplex Of The Stator Of Bovine Mitochondrial At		2e-17
4b2q_T	129	Model Of The Yeast F1fo-Atp Synthase Dimer Based On		1e-16
2wss_T	116	The Structure Of The Membrane Extrinsic Region Of B		2e-15

>pdb|2CLY|A Chain A, Subcomplex Of The Stator Of Bovine Mitochondrial Atp Synthase Length = 214

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 72/108 (66%)
Query: 61  LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
           +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y  +
Sbjct: 101 IKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHIS 160
Query: 121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           ++++ R+  Q+HM++WV   V++SI+  Q+K++I KCI+DLK L+ +A
Sbjct: 161 VQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKKA 208

>pdb|4B2Q|T Chain T, Model Of The Yeast F1fo-Atp Synthase Dimer Based On Subtomogram Average Length = 129

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 71/107 (66%)
Query: 61  LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
           +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y  +
Sbjct: 23  IKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHIS 82
Query: 121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAAR 167
           ++++ R+  Q+HM++WV   V++SI+  Q+K++I KCI+DLK L+ +
Sbjct: 83  VQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKK 129

>pdb|2WSS|T Chain T, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 116

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 69/108 (63%)
Query: 61  LASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAA 120
           +  ++ AI+ E   Q   + +  L++ +R NI   LE  +RER    Y++VKNRL+Y  +
Sbjct: 3   IKQIQDAIDXEKSQQALVQKRHYLFDVQRNNIAXALEVTYRERLHRVYREVKNRLDYHIS 62
Query: 121 LESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
           +++  R+  Q+H ++WV   V++SI+  Q+K++I KCI+DLK L+ +A
Sbjct: 63  VQNXXRQKEQEHXINWVEKRVVQSISAQQEKETIAKCIADLKLLSKKA 110

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2cly_A	214	ATP synthase B chain, mitochondrial; mitochondrion	2e-31
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-05

>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T* Length = 214

 Score =  111 bits (279), Expect = 2e-31
 Identities = 41/111 (36%), Positives = 72/111 (64%)

Query: 58  NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
              +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y
Sbjct: 98  QASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDY 157

Query: 118 QAALESIQRRISQKHMVSWVVSHVLKSITPDQDKQSIKKCISDLKALAARA 168
             +++++ R+  Q+HM++WV   V++SI+  Q+K++I KCI+DLK L+ +A
Sbjct: 158 HISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKETIAKCIADLKLLSKKA 208

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 8/27 (29%)

Query: 150 DKQSIKKCISDLK--------ALAARA 168
           +KQ++KK  + LK        ALA +A
Sbjct: 18  EKQALKKLQASLKLYADDSAPALAIKA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
2cly_A	214	ATP synthase B chain, mitochondrial; mitochondrion	100.0

>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*

Probab=100.00  E-value=4.9e-71  Score=458.62  Aligned_cols=166  Identities=31%  Similarity=0.514  Sum_probs=89.9

Q ss_pred             chhhccccccccchhhhhhHHHHHHHHhhceeeeechHHHHH-----HHHHHHHhh------------------hhhhHH
Q psy6810           3 SRFVMQHGKFDTIGPVSLGEPIWVSDMAKCAQVMNRSVVLTW-----VMYQSHRAG------------------KIRTND   59 (168)
Q Consensus         3 ~~f~~~~~KTG~tGp~~lg~gl~~y~iSkEiyVin~Eti~~~-----~~y~~~k~g------------------n~~R~~   59 (168)
                      +||++||+|||+||||++|+||++|+||||||||||||++++     ++|+++++|                  |++|++
T Consensus        20 ~wf~~l~~KTGvtGPY~~~~GL~~yliSKEiyVvneEt~~~~~~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~   99 (214)
T 2cly_A           20 EFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQA   99 (214)
T ss_dssp             -----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccchHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999999999997744     445667766                  999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy6810          60 KLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHMVSWVVS  139 (168)
Q Consensus        60 ~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~mv~wVi~  139 (168)
                      |+++++++|+++|++||+++++++|||++|||++|++|++||+|+++||+|||+||||||++|+++||.||+||++||++
T Consensus       100 ~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~~mv~wV~~  179 (214)
T 2cly_A          100 SIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEK  179 (214)
T ss_dssp             HHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcCChHHHHHHHHHHHHHHHHHhhhC
Q psy6810         140 HVLKSITPDQDKQSIKKCISDLKALAARA  168 (168)
Q Consensus       140 ~V~ksI~pk~ek~~L~qcIadle~La~k~  168 (168)
                      +|.|+|||+|+|++|++||+|||.|++++
T Consensus       180 ~V~k~it~~~ek~~L~~cIadlk~La~~~  208 (214)
T 2cly_A          180 RVVQSISAQQEKETIAKCIADLKLLSKKA  208 (214)
T ss_dssp             HHTC-------------------------
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d2clya1	105	f.52.1.1 (A:79-183) ATP synthase subunit b, mitoch	2e-25

>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: Membrane and cell surface proteins and peptides
fold: ATP synthase B chain-like
superfamily: ATP synthase B chain-like
family: ATP synthase B chain-like
domain: ATP synthase subunit b, mitochondrial
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.8 bits (228), Expect = 2e-25
 Identities = 28/86 (32%), Positives = 52/86 (60%)

Query: 58  NDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEY 117
              +  ++ AI+ E   Q   + +  L++ +R NI M LE  +RER    Y++VKNRL+Y
Sbjct: 20  QASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDY 79

Query: 118 QAALESIQRRISQKHMVSWVVSHVLK 143
             +++++ R+  Q+HM++WV   V++
Sbjct: 80  HISVQNMMRQKEQEHMINWVEKRVVQ 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d2clya1	105	ATP synthase subunit b, mitochondrial {Cow (Bos ta	100.0

>d2clya1 f.52.1.1 (A:79-183) ATP synthase subunit b, mitochondrial {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: ATP synthase B chain-like
superfamily: ATP synthase B chain-like
family: ATP synthase B chain-like
domain: ATP synthase subunit b, mitochondrial
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-38  Score=236.83  Aligned_cols=90  Identities=31%  Similarity=0.571  Sum_probs=89.2

Q ss_pred             hhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy6810          54 KIRTNDKLASLKGAIENELWNQERSKAQAVLYEAKRENIQMQLEAVFRERALFAYQQVKNRLEYQAALESIQRRISQKHM  133 (168)
Q Consensus        54 n~~R~~~i~~vk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~~lqlEa~yreq~~~v~~EvK~rLDy~V~~e~~~R~~eQ~~m  133 (168)
                      |++|++||++++++|+++|+++|+++++++|||++|||++|++|++||+|+++||+|||+||||||++|+++||.||+||
T Consensus        16 ~~~r~~~i~~l~~~Ie~~k~~q~~~~~~~~Lfda~kEnvalqlEa~yrerl~~v~~evK~rLDy~V~~e~~~Rr~eQ~hm   95 (105)
T d2clya1          16 EEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHM   95 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy6810         134 VSWVVSHVLK  143 (168)
Q Consensus       134 v~wVi~~V~k  143 (168)
                      ++||+++|.|
T Consensus        96 v~wV~~~V~K  105 (105)
T d2clya1          96 INWVEKRVVQ  105 (105)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999999986