Psyllid ID: psy6814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKILSLRFNDPGFYKNAS
Secondary Structure (PSIPRED)
cEEEEHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEEEEEEEHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHEEEHEEEHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccc
Coil and Loop (DISEMBL)
LKIKFSYLGSLVITLSILFIFIpayvfssiepnwsyldSLYFCFISIttiglgdyipglsyLGSLVITLSILFIFIpayvfssiepnwsyldSLYFCFISIttiglgdyipgespqqeFKSLYKIIVSVYLILSLLFTMFVLKtfhaipelkIMKILSlrfndpgfyknas
Flexible Loop (DISEMBL)
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKIlslrfndpgfyknas
Low Complexity Region (SEG)
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKiivsvylilsllFTMFVLKTFHAIPELKIMKILSLRFNDPGFYKNAS
Disordered region (IsUnstruct)
**IKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKILSLRFNDPGFY****
Disordered Region (DISOPRED)
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKI***************
Disordered Region (DISEMBL)
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKILSLRFNDPGFYKNAS
Disordered Region (DISPRO)
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKILSLRFNDP*******
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRRooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LKIKFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKILSLRFNDPGFYKNAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q0P5A0	336	Potassium channel subfami	yes	N/A	0.532	0.270	0.521	5e-21
Q5UE96	336	Potassium channel subfami	yes	N/A	0.532	0.270	0.521	8e-21
Q5RD07	336	Potassium channel subfami	yes	N/A	0.526	0.267	0.516	9e-21
O00180	336	Potassium channel subfami	yes	N/A	0.526	0.267	0.516	9e-21
Q8R454	336	Potassium channel subfami	no	N/A	0.526	0.267	0.516	1e-20
Q9Z2T2	336	Potassium channel subfami	no	N/A	0.526	0.267	0.516	1e-20
O08581	336	Potassium channel subfami	no	N/A	0.526	0.267	0.516	1e-20
Q9Y257	313	Potassium channel subfami	no	N/A	0.695	0.380	0.369	1e-20
Q94526	1001	Open rectifier potassium	yes	N/A	0.497	0.084	0.372	7e-10
Q96T55	309	Potassium channel subfami	no	N/A	0.456	0.252	0.395	1e-08

>sp|Q0P5A0|KCNK1_BOVIN Potassium channel subfamily K member 1 OS=Bos taurus GN=KCNK1 PE=2 SV=1

 Score =  100 bits (248), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 69/92 (75%), Gaps = 1/92 (1%)

Query: 66  VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKI 125
           V+T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI
Sbjct: 189 VVTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKI 247

Query: 126 IVSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
            ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 248 GITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weakly inward rectifying potassium channel.
Bos taurus (taxid: 9913)

>sp|Q5UE96|KCNK1_RABIT Potassium channel subfamily K member 1 OS=Oryctolagus cuniculus GN=KCNK1 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 69/92 (75%), Gaps = 1/92 (1%)

Query: 66  VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKI 125
           +IT+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI
Sbjct: 189 LITVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKI 247

Query: 126 IVSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
            ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 248 GITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weakly inward rectifying potassium channel.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5RD07|KCNK1_PONAB Potassium channel subfamily K member 1 OS=Pongo abelii GN=KCNK1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 67  ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKII 126
           +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI 
Sbjct: 190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query: 127 VSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 249 ITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weakly inward rectifying potassium channel.

Pongo abelii (taxid: 9601)

>sp|O00180|KCNK1_HUMAN Potassium channel subfamily K member 1 OS=Homo sapiens GN=KCNK1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 67  ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKII 126
           +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI 
Sbjct: 190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query: 127 VSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 249 ITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weakly inward rectifying potassium channel.

Homo sapiens (taxid: 9606)

>sp|Q8R454|KCNK1_CAVPO Potassium channel subfamily K member 1 OS=Cavia porcellus GN=KCNK1 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 67  ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKII 126
           +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI 
Sbjct: 190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query: 127 VSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 249 ITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weakly inward rectifying potassium channel.

Cavia porcellus (taxid: 10141)

>sp|Q9Z2T2|KCNK1_RAT Potassium channel subfamily K member 1 OS=Rattus norvegicus GN=Kcnk1 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 67  ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKII 126
           +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI 
Sbjct: 190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query: 127 VSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 249 ITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weakly inward rectifying potassium channel.

Rattus norvegicus (taxid: 10116)

>sp|O08581|KCNK1_MOUSE Potassium channel subfamily K member 1 OS=Mus musculus GN=Kcnk1 PE=1 SV=2

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 68/91 (74%), Gaps = 1/91 (1%)

Query: 67  ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKII 126
           +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI 
Sbjct: 190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query: 127 VSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           ++ YL+L L+  + VL+TF  + ELK  + +
Sbjct: 249 ITCYLLLGLIAMLVVLETFCELHELKKFRKM 279

Weak inwardly rectifying potassium channel.

Mus musculus (taxid: 10090)

>sp|Q9Y257|KCNK6_HUMAN Potassium channel subfamily K member 6 OS=Homo sapiens GN=KCNK6 PE=1 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 19/138 (13%)

Query: 15  LSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSILFI 74
           LS+L   +P    S +   W +      C+  +  +G+             V+T+  L  
Sbjct: 145 LSLLLTHVP---LSWLSMRWGWDPRRAACWHLVALLGV-------------VVTVCFL-- 186

Query: 75  FIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILS 134
            +PA +F+ +E  WS+LD+ YFCFIS++TIGLGDY+PGE+P Q +++LYK++V+VYL L 
Sbjct: 187 -VPAVIFAHLEEAWSFLDAFYFCFISLSTIGLGDYVPGEAPGQPYRALYKVLVTVYLFLG 245

Query: 135 LLFTMFVLKTFHAIPELK 152
           L+  + VL+TF  + +L 
Sbjct: 246 LVAMVLVLQTFRHVSDLH 263

Exhibits outward rectification in a physiological K(+) gradient and mild inward rectification in symmetrical K(+) conditions.

Homo sapiens (taxid: 9606)

>sp|Q94526|ORK1_DROME Open rectifier potassium channel protein 1 OS=Drosophila melanogaster GN=Ork1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/94 (37%), Positives = 57/94 (60%), Gaps = 9/94 (9%)

Query: 57  PGLSYLGSLVITLS---ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIP-- 111
           P L  + ++VI L     LF+ +P++VF+  E NW Y  SLY+ +++ TTIG GDY+P  
Sbjct: 169 PQLGLITTVVIALIPGIALFLLLPSWVFTYFE-NWPYSISLYYSYVTTTTIGFGDYVPTF 227

Query: 112 GESPQQEFKS---LYKIIVSVYLILSLLFTMFVL 142
           G +  +EF     +Y+I V V+ I SL + + ++
Sbjct: 228 GANQPKEFGGWFVVYQIFVIVWFIFSLGYLVMIM 261

Background potassium channel. Rectification is dependent on external potassium concentration. Acts as an outwardly rectifying channel but as external potassium levels increase, this is reversed.

Drosophila melanogaster (taxid: 7227)

>sp|Q96T55|KCNKG_HUMAN Potassium channel subfamily K member 16 OS=Homo sapiens GN=KCNK16 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 3/81 (3%)

Query: 59  LSYLG-SLVITLSILFIFI-PAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQ 116
           L  LG +L +TL  L I I P  VFS +E  WS+ +  YF FI+++TIG GDY+ G  P 
Sbjct: 167 LQVLGLALFLTLGTLVILIFPPMVFSHVE-GWSFSEGFYFAFITLSTIGFGDYVVGTDPS 225

Query: 117 QEFKSLYKIIVSVYLILSLLF 137
           + + S+Y+ + +++++L L +
Sbjct: 226 KHYISVYRSLAAIWILLGLAW 246

Outward rectifying potassium channel. Produces rapidly activating and non-inactivating outward rectifier K(+) currents.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
47228939	132	unnamed protein product [Tetraodon nigro	0.491	0.636	0.535	7e-22
321457297	369	hypothetical protein DAPPUDRAFT_218276 [	0.614	0.284	0.467	7e-22
357625402	363	hypothetical protein KGM_17995 [Danaus p	0.584	0.275	0.49	2e-21
432905942	335	PREDICTED: potassium channel subfamily K	0.538	0.274	0.516	5e-21
328702860	313	PREDICTED: potassium channel subfamily K	0.725	0.396	0.346	5e-21
410901515	334	PREDICTED: potassium channel subfamily K	0.497	0.254	0.529	6e-21
348507008	335	PREDICTED: potassium channel subfamily K	0.584	0.298	0.480	1e-20
91077788	330	PREDICTED: similar to TWiK family of pot	0.345	0.178	0.597	1e-20
270001497	365	hypothetical protein TcasGA2_TC000334 [T	0.345	0.161	0.597	1e-20
339238251	330	potassium channel subfamily K member 1 [	0.538	0.278	0.521	2e-20

>gi|47228939|emb|CAG09454.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 68/84 (80%)

Query: 72  LFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYL 131
           LF+ IPA VFS++E NW++LDS YFCFIS++TIGLGDY+PGE+  Q+++ +YK+ ++VYL
Sbjct: 10  LFLLIPAAVFSALEDNWNFLDSFYFCFISLSTIGLGDYVPGEAANQKYREMYKMAITVYL 69

Query: 132 ILSLLFTMFVLKTFHAIPELKIMK 155
           IL L+  + VL+TF  + +LK ++
Sbjct: 70  ILGLIVMLVVLETFCELQQLKQLR 93

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321457297|gb|EFX68386.1| hypothetical protein DAPPUDRAFT_218276 [Daphnia pulex]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 75/107 (70%), Gaps = 2/107 (1%)

Query: 65  LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
           +   L + F  +PA VF+ +EP+W+YLDS+Y+CFIS+TTIGLGDYIPG+SP Q  + LYK
Sbjct: 187 IATVLVVFFFLVPAGVFNVLEPDWNYLDSIYYCFISLTTIGLGDYIPGDSPNQPLRPLYK 246

Query: 125 IIVSVYLILSLLFTMFVLKTFHAIPELKIMKILSLRFNDPGFYKNAS 171
           I  +VYL++ L+F +  L  F+ IP+L +  +  L+ ++  +  NAS
Sbjct: 247 IGTTVYLLIGLVFMVLTLTVFYEIPQLNVGSVFLLKSDE--YLANAS 291

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625402|gb|EHJ75861.1| hypothetical protein KGM_17995 [Danaus plexippus]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 69/100 (69%)

Query: 59  LSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQE 118
           L +L  +V+ L + F+ +PA +F S+EP W YLDS Y+CFIS+TTIGLGDYIPG+ P Q 
Sbjct: 194 LVHLMIIVMILVVFFLMVPAAIFDSLEPEWDYLDSFYYCFISLTTIGLGDYIPGDYPDQP 253

Query: 119 FKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKILS 158
           ++ LYK+  + YLI+ L F M  L  F+ IP+L +  + S
Sbjct: 254 YRPLYKVAATFYLIIGLTFLMLTLTVFYDIPQLNLSTVFS 293

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432905942|ref|XP_004077486.1| PREDICTED: potassium channel subfamily K member 1-like [Oryzias latipes]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 70/93 (75%), Gaps = 1/93 (1%)

Query: 73  FIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLI 132
           F  IPA +FS++E NW++L+S YFCFIS++TIGLGDY+PGE+  Q+F+ LYK+ ++VYLI
Sbjct: 195 FFLIPAAIFSALEENWNFLESFYFCFISLSTIGLGDYVPGEAANQKFRELYKVGITVYLI 254

Query: 133 LSLLFTMFVLKTFHAIPELK-IMKILSLRFNDP 164
           L L+  + VL+TF  + +LK + K+  LR   P
Sbjct: 255 LGLIVMLVVLETFCELQQLKQLRKMFYLRKEKP 287

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328702860|ref|XP_001943901.2| PREDICTED: potassium channel subfamily K member 1-like [Acyrthosiphon pisum]

 Score =  105 bits (263), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 55/179 (30%)

Query: 29  SIEPNWSYLDSLYFCFISITTIGLGD---------------------------------- 54
           S EPNWS+  SL+F    ITTIG G                                   
Sbjct: 83  SGEPNWSFGQSLFFACTVITTIGYGHVTPLSQEGKLFCMLYALFGIPLTLVLLTALVDRL 142

Query: 55  YIPGLSYL---------------------GSLVITLSILFIFIPAYVFSSIEPNWSYLDS 93
            IP   YL                     G+++ TL  LF+ +PA +F+ +EP W+Y+DS
Sbjct: 143 MIPTTKYLHFLNSRLGHLYPPFTIRLLHFGTILGTLIFLFLLLPAAMFTYLEPEWNYMDS 202

Query: 94  LYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELK 152
           LY+CFIS+TTIGLGDYIPG++P Q+++ LYK++++ YL++ L+  M  L  ++ I +L 
Sbjct: 203 LYYCFISLTTIGLGDYIPGDAPDQKYRPLYKLMITGYLVVGLVCVMLTLSIYYDIRQLN 261

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410901515|ref|XP_003964241.1| PREDICTED: potassium channel subfamily K member 1-like [Takifugu rubripes]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 67/85 (78%)

Query: 73  FIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLI 132
           F+ IPA VFS++E NW++LDS YFCFIS++TIGLGDY+PGE+  Q ++ LYK+ ++VYLI
Sbjct: 195 FLLIPAAVFSALEDNWNFLDSFYFCFISLSTIGLGDYVPGEAANQNYRELYKMGITVYLI 254

Query: 133 LSLLFTMFVLKTFHAIPELKIMKIL 157
           L L+  + VL+TF  + +LK ++ +
Sbjct: 255 LGLIVMLVVLETFCELQQLKQLRKM 279

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348507008|ref|XP_003441049.1| PREDICTED: potassium channel subfamily K member 1-like [Oreochromis niloticus]

 Score =  104 bits (260), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 75/104 (72%), Gaps = 4/104 (3%)

Query: 62  LGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKS 121
           LG L ++    F  IPA +FS++E NW++L+S YFCFIS++TIGLGDY+PGE+  Q+F+ 
Sbjct: 187 LGMLAVSC---FFLIPAAIFSALEENWNFLESFYFCFISLSTIGLGDYVPGEAANQKFRE 243

Query: 122 LYKIIVSVYLILSLLFTMFVLKTFHAIPELK-IMKILSLRFNDP 164
           LYK+ ++VYLIL L+  + VL+TF  + +LK + K+  L+   P
Sbjct: 244 LYKVGITVYLILGLIVMLVVLETFCELQQLKQLRKMFYLKKEKP 287

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91077788|ref|XP_969244.1| PREDICTED: similar to TWiK family of potassium channels family member (twk-46) [Tribolium castaneum]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 58/77 (75%)

Query: 77  PAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLL 136
           PA VF+SIEP W YLDSLY+CFIS+TTIGLGDYIPG+SP Q ++ LYKI  + YL + + 
Sbjct: 188 PAAVFASIEPEWDYLDSLYYCFISLTTIGLGDYIPGDSPDQPYRPLYKIATTGYLFMGIT 247

Query: 137 FTMFVLKTFHAIPELKI 153
           F M  L  F+ IP+L +
Sbjct: 248 FMMLTLAVFYDIPQLNL 264

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001497|gb|EEZ97944.1| hypothetical protein TcasGA2_TC000334 [Tribolium castaneum]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/77 (59%), Positives = 58/77 (75%)

Query: 77  PAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLL 136
           PA VF+SIEP W YLDSLY+CFIS+TTIGLGDYIPG+SP Q ++ LYKI  + YL + + 
Sbjct: 223 PAAVFASIEPEWDYLDSLYYCFISLTTIGLGDYIPGDSPDQPYRPLYKIATTGYLFMGIT 282

Query: 137 FTMFVLKTFHAIPELKI 153
           F M  L  F+ IP+L +
Sbjct: 283 FMMLTLAVFYDIPQLNL 299

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339238251|ref|XP_003380680.1| potassium channel subfamily K member 1 [Trichinella spiralis] gi|316976404|gb|EFV59705.1| potassium channel subfamily K member 1 [Trichinella spiralis]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/94 (52%), Positives = 67/94 (71%), Gaps = 2/94 (2%)

Query: 66  VITLSILF--IFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
           +ITL IL     +PA VF SIE NW+YLD+ Y+CF+S+TTIGLGDYIPG+ P Q+F+ +Y
Sbjct: 184 MITLLILMSLFVLPAAVFQSIEDNWTYLDAFYYCFVSLTTIGLGDYIPGDKPNQKFREIY 243

Query: 124 KIIVSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           KI+ + YLI+ LL  M  L   + +PEL + + L
Sbjct: 244 KIMTTGYLIIGLLGMMLFLSVVYEVPELNVSRFL 277

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
UNIPROTKB|Q0P5A0	336	KCNK1 "Potassium channel subfa	0.502	0.255	0.494	6.4e-25
UNIPROTKB|F1RGV1	336	KCNK1 "Uncharacterized protein	0.502	0.255	0.494	6.4e-25
ZFIN|ZDB-GENE-070620-26	338	kcnk1a "potassium channel, sub	0.549	0.278	0.447	8.9e-25
UNIPROTKB|F1NP03	336	KCNK1 "Uncharacterized protein	0.497	0.252	0.488	1.2e-24
UNIPROTKB|O00180	336	KCNK1 "Potassium channel subfa	0.497	0.252	0.488	2.4e-24
MGI|MGI:109322	336	Kcnk1 "potassium channel, subf	0.497	0.252	0.488	2.4e-24
RGD|621447	336	Kcnk1 "potassium channel, subf	0.497	0.252	0.488	2.4e-24
WB|WBGene00006696	319	twk-46 [Caenorhabditis elegans	0.549	0.294	0.458	2e-21
ZFIN|ZDB-GENE-090312-78	337	kcnk1b "potassium channel, sub	0.684	0.347	0.389	8.2e-21
RGD|621450	313	Kcnk6 "potassium channel, subf	0.608	0.332	0.409	1.4e-18

UNIPROTKB|Q0P5A0 KCNK1 "Potassium channel subfamily K member 1" [Bos taurus (taxid:9913)]

 Score = 217 (81.4 bits), Expect = 6.4e-25, Sum P(3) = 6.4e-25
 Identities = 43/87 (49%), Positives = 58/87 (66%)

Query:    66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKX 125
             V+T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK 
Sbjct:   189 VVTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKI 247

Query:   126 XXXXXXXXXXXFTMFVLKTFHAIPELK 152
                          + VL+TF  + ELK
Sbjct:   248 GITCYLLLGLIAMLVVLETFCELHELK 274

GO:0005768 "endosome" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

UNIPROTKB|F1RGV1 KCNK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 217 (81.4 bits), Expect = 6.4e-25, Sum P(3) = 6.4e-25
 Identities = 43/87 (49%), Positives = 58/87 (66%)

Query:    66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKX 125
             V+T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK 
Sbjct:   189 VVTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKI 247

Query:   126 XXXXXXXXXXXFTMFVLKTFHAIPELK 152
                          + VL+TF  + ELK
Sbjct:   248 GITCYLLLGLIAMLVVLETFCELHELK 274

GO:0005768 "endosome" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070620-26 kcnk1a "potassium channel, subfamily K, member 1a" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 8.9e-25, Sum P(3) = 8.9e-25
 Identities = 43/96 (44%), Positives = 61/96 (63%)

Query:    66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKX 125
             +IT+S  F+ IPA +FS +E  W++L+S YFCFIS++TIGLGDY+PGE   Q F+ LYK 
Sbjct:   189 IITVSCFFL-IPAIIFSVLEEEWNFLESFYFCFISLSTIGLGDYVPGEGYHQRFRELYKL 247

Query:   126 XXXXXXXXXXXFTMFVLKTFHAIPELK-IMKILSLR 160
                          + VL+TF  + +LK + K+  LR
Sbjct:   248 GITFYLILGLIAMLVVLETFCELQQLKKLRKMFYLR 283

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1NP03 KCNK1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
 Identities = 42/86 (48%), Positives = 57/86 (66%)

Query:    67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKXX 126
             IT+S  F FIPA +FS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK  
Sbjct:   190 ITVSCFF-FIPAAIFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query:   127 XXXXXXXXXXFTMFVLKTFHAIPELK 152
                         + VL+TF  + ELK
Sbjct:   249 ITCYLLLGLIAMLVVLETFCELHELK 274

GO:0016021 "integral to membrane" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

UNIPROTKB|O00180 KCNK1 "Potassium channel subfamily K member 1" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
 Identities = 42/86 (48%), Positives = 57/86 (66%)

Query:    67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKXX 126
             +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK  
Sbjct:   190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query:   127 XXXXXXXXXXFTMFVLKTFHAIPELK 152
                         + VL+TF  + ELK
Sbjct:   249 ITCYLLLGLIAMLVVLETFCELHELK 274

GO:0005768 "endosome" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0035094 "response to nicotine" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=TAS

GO:0006813 "potassium ion transport" evidence=TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

MGI|MGI:109322 Kcnk1 "potassium channel, subfamily K, member 1" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
 Identities = 42/86 (48%), Positives = 57/86 (66%)

Query:    67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKXX 126
             +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK  
Sbjct:   190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query:   127 XXXXXXXXXXFTMFVLKTFHAIPELK 152
                         + VL+TF  + ELK
Sbjct:   249 ITCYLLLGLIAMLVVLETFCELHELK 274

GO:0005216 "ion channel activity" evidence=IEA

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005768 "endosome" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IC

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0031526 "brush border membrane" evidence=ISO

GO:0034765 "regulation of ion transmembrane transport" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

RGD|621447 Kcnk1 "potassium channel, subfamily K, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 213 (80.0 bits), Expect = 2.4e-24, Sum P(3) = 2.4e-24
 Identities = 42/86 (48%), Positives = 57/86 (66%)

Query:    67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKXX 126
             +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK  
Sbjct:   190 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 248

Query:   127 XXXXXXXXXXFTMFVLKTFHAIPELK 152
                         + VL+TF  + ELK
Sbjct:   249 ITCYLLLGLIAMLVVLETFCELHELK 274

GO:0005244 "voltage-gated ion channel activity" evidence=IEA

GO:0005267 "potassium channel activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IDA

GO:0005768 "endosome" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0031526 "brush border membrane" evidence=IDA

GO:0035094 "response to nicotine" evidence=IEP

WB|WBGene00006696 twk-46 [Caenorhabditis elegans (taxid:6239)]

 Score = 227 (85.0 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 44/96 (45%), Positives = 62/96 (64%)

Query:    59 LSYLGSLVITLSILFIF-IPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQ 117
             L ++G +  +L +LF+F IPA+VFSSIE +WSYLD+ Y+CF+S+TTIGLGD+ PG+ P Q
Sbjct:   188 LIHVGVVFASL-LLFVFAIPAWVFSSIETDWSYLDAFYYCFVSLTTIGLGDFEPGDDPNQ 246

Query:   118 EFKSLYKXXXXXXXXXXXXFTMFVLKTFHAIPELKI 153
              F+ LYK              M  L T + IP+  +
Sbjct:   247 SFRGLYKIGATVYLMGGLCCMMLFLATLYDIPQFNL 282

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-090312-78 kcnk1b "potassium channel, subfamily K, member 1b" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
 Identities = 46/118 (38%), Positives = 67/118 (56%)

Query:    48 TTIGLGDYIPGLSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLG 107
             T  GL   +  L +   L +     F  IPA +FS++E NW++L+S YFCFIS++TIGLG
Sbjct:   170 TRWGLSKPLVALVHATLLAVVAVSCFFLIPAAIFSALEENWNFLESFYFCFISLSTIGLG 229

Query:   108 DYIPGESPQQEFKSLYKXXXXXXXXXXXXFTMFVLKTFHAIPELK-IMKILSLRFNDP 164
             DY+PGE+  Q F+ LYK              + VL+TF  + +LK + K+  L+   P
Sbjct:   230 DYVPGEAFNQRFRELYKLGITVYLLLGLIAMLVVLETFCELQQLKQLRKMFYLKKEKP 287

GO:0005267 "potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0071805 "potassium ion transmembrane transport" evidence=IEA

RGD|621450 Kcnk6 "potassium channel, subfamily K, member 6" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 43/105 (40%), Positives = 67/105 (63%)

Query:    61 YLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFK 120
             +L +L++ +  +F  IPA VF+ +E  WS+LD+ YFCFIS++TIGLGDY+PGE+P Q ++
Sbjct:   172 HLVALLMVIVAIFFLIPAAVFAYLEEAWSFLDAFYFCFISLSTIGLGDYVPGEAPGQPYR 231

Query:   121 SLYKXXXXXXXXXXXXFTMFVLKTFHAIPELK-IMKILSLRFNDP 164
             SLYK              + VL+TF  + +L  + +++ L   DP
Sbjct:   232 SLYKVLVTAYLFLGLVAMVLVLQTFRRVSDLHGLTELILLPDPDP 276

GO:0005267 "potassium channel activity" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RD07	KCNK1_PONAB	No assigned EC number	0.5164	0.5263	0.2678	yes	N/A
Q0P5A0	KCNK1_BOVIN	No assigned EC number	0.5217	0.5321	0.2708	yes	N/A
O00180	KCNK1_HUMAN	No assigned EC number	0.5164	0.5263	0.2678	yes	N/A
Q5UE96	KCNK1_RABIT	No assigned EC number	0.5217	0.5321	0.2708	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	171
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	8e-06
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	1e-05

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 41.4 bits (98), Expect = 8e-06
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 66  VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKI 125
           ++ L +L      Y        W +LD+LYF F+++TTIG GD +P            ++
Sbjct: 1   ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLT-------DAGRL 53

Query: 126 IVSVYLILSLLFTMFVLKTF 145
              +Y+++ +   +  L   
Sbjct: 54  FTIIYILIGIPLFLLFLAVL 73

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 19/73 (26%), Positives = 33/73 (45%)

Query: 12 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSI 71
          ++ L +L      Y        W +LD+LYF F+++TTIG GD +P         I   +
Sbjct: 1  ILLLLVLIFGTVYYSLEEEGWGWDFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYIL 60

Query: 72 LFIFIPAYVFSSI 84
          + I +     + +
Sbjct: 61 IGIPLFLLFLAVL 73

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG4404|consensus	350		99.97
KOG1418|consensus	433		99.82
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.52
PRK10537	393	voltage-gated potassium channel; Provisional	99.19
KOG4404|consensus	350		99.16
KOG1418|consensus	433		99.07
KOG3713|consensus	477		99.06
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	98.87
KOG1419|consensus	654		98.84
KOG1545|consensus	507		98.64
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.61
KOG1420|consensus	1103		98.19
KOG3713|consensus	477		98.02
KOG0498|consensus	727		97.95
PRK10537	393	voltage-gated potassium channel; Provisional	97.87
KOG1545|consensus	507		97.85
KOG3193|consensus	1087		97.81
KOG4390|consensus	632		97.76
KOG3684|consensus	489		97.66
KOG1419|consensus	654		97.52
KOG0501|consensus	971		97.38
KOG4390|consensus	632		97.3
PLN03192	823	Voltage-dependent potassium channel; Provisional	96.9
KOG1420|consensus	1103		96.31
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	96.05
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	95.72
KOG0501|consensus	971		94.99
KOG3193|consensus	1087		94.83
KOG3684|consensus	489		92.42
KOG3827|consensus	400		92.17
KOG0500|consensus	536		87.26
KOG0498|consensus	727		86.3
PF00520	200	Ion_trans: Ion transport protein calcium channel s	82.25

>KOG4404|consensus

Probab=99.97  E-value=3.1e-31  Score=220.28  Aligned_cols=141  Identities=35%  Similarity=0.690  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhccccC---------------------------------------------CCCCCccCc
Q psy6814           5 FSYLGSLVITLSILFIFIPAYVFSSI---------------------------------------------EPNWSYLDS   39 (171)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~~~w~~~~a   39 (171)
                      =+++..+++.+.+.|+++||.+|..-                                             ..+|+|.+|
T Consensus         5 qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF~Ga   84 (350)
T KOG4404|consen    5 QNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKFAGA   84 (350)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCccccccccccCcc
Confidence            36777888889999999999999643                                             149999999


Q ss_pred             eeeeeeeEeccccCCCCcc-------------------c----------------------cccc---------h---hh
Q psy6814          40 LYFCFISITTIGLGDYIPG-------------------L----------------------SYLG---------S---LV   66 (171)
Q Consensus        40 ~yF~~~~lTTiGyGd~~Pg-------------------l----------------------~~~g---------~---l~   66 (171)
                      |||+.|++||||||+.+|+                   |                      ++.|         |   +.
T Consensus        85 FYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~~l~~i~  164 (350)
T KOG4404|consen   85 FYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVYNLVLIL  164 (350)
T ss_pred             eEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHHHHHHHH
Confidence            9999999999999999993                   0                      1111         1   23


Q ss_pred             hhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCC-CcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          67 ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESP-QQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        67 ~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~-~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .....+.++.|+.+|+..| +|+|+||+||||||+|||||||+|+.++. ....+|.|+.+..+||++|+++++.++|.+
T Consensus       165 ~~~~~~~i~~gaa~fs~~E-~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~Nll  243 (350)
T KOG4404|consen  165 FTACILLICCGAAMFSSVE-GWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLL  243 (350)
T ss_pred             HHHHHHHHHhhHHHhhccc-CcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHH
Confidence            3344677789999999999 99999999999999999999999999873 335678999999999999999999999976


Q ss_pred             H
Q psy6814         146 H  146 (171)
Q Consensus       146 ~  146 (171)
                      +
T Consensus       244 v  244 (350)
T KOG4404|consen  244 V  244 (350)
T ss_pred             H
Confidence            6

>KOG1418|consensus

Probab=99.82  E-value=5.6e-21  Score=163.07  Aligned_cols=112  Identities=35%  Similarity=0.690  Sum_probs=88.4

Q ss_pred             CCCCCccCceeeeeeeEeccccCCCCc----c------------------ccccch------------------------
Q psy6814          31 EPNWSYLDSLYFCFISITTIGLGDYIP----G------------------LSYLGS------------------------   64 (171)
Q Consensus        31 ~~~w~~~~a~yF~~~~lTTiGyGd~~P----g------------------l~~~g~------------------------   64 (171)
                      .++|+|.+|+|||+|++|||||||++|    |                  +.++|+                        
T Consensus       111 ~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~~  190 (433)
T KOG1418|consen  111 TQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSLRKLYRRRHVELQRDRIRS  190 (433)
T ss_pred             CcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            357999999999999999999999999    2                  011110                        


Q ss_pred             ----------------------------hhhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCC
Q psy6814          65 ----------------------------LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQ  116 (171)
Q Consensus        65 ----------------------------l~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~  116 (171)
                                                  ..+..+++++..++.++...| +|+|+||+||+++|+|||||||++|.+..+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~w~f~~~~Yf~fisltTIG~GD~vp~~~~~  269 (433)
T KOG1418|consen  191 NLRRSIGLRNRSVELGIELLDELRFILLLLLGISLVYLSPGSLLFSLQE-QWSFIEAFYFSFISLTTIGFGDIVPRTLLG  269 (433)
T ss_pred             hhhccccchhcccccchhhccCcceehhhhheeeEEEecccceeeecee-ceeeEeeeeEEEEEeeeecCCccccCCCcc
Confidence                                        112223456677788888888 799999999999999999999999999876


Q ss_pred             cc-cccchhhhhhHHHHHHHHHHHHHHH
Q psy6814         117 QE-FKSLYKIIVSVYLILSLLFTMFVLK  143 (171)
Q Consensus       117 ~~-~~~~~~~~~~~~i~~Gl~~~~~~~~  143 (171)
                      .. +...++....+++.+|+..++....
T Consensus       270 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~  297 (433)
T KOG1418|consen  270 RFRREELVDPLASVWILSGLALLALVLL  297 (433)
T ss_pred             eeeccccccchhHHHHHhhhhHHHHHhh
Confidence            43 2233468899999999999999884

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.52  E-value=9.8e-16  Score=104.52  Aligned_cols=71  Identities=30%  Similarity=0.702  Sum_probs=56.4

Q ss_pred             HHHhhhhhhhcc---cCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814          72 LFIFIPAYVFSS---IEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI  148 (171)
Q Consensus        72 i~i~iga~if~~---~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~  148 (171)
                      ..+..++..+..   .| +|++.|++||+++|+|||||||+.|.++.+       |++++++++.|+.+++..++.+.+.
T Consensus         5 ~~l~~~~~~~~~~~~~~-~~~~~da~yfs~~t~tTvGyGDi~p~t~~g-------r~~~~~~~~~G~~~~~~~~~~~~~~   76 (79)
T PF07885_consen    5 LVLAFGAIFFYISEGSE-KWSFIDALYFSFVTITTVGYGDIVPQTPAG-------RIFTIIYMLIGIFLFALFLSVLASV   76 (79)
T ss_dssp             HHHHHHHHHHHHTTSSS-TTSHHHHHHHHHHHHTT---SSSSTSSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHhcccCCCccCCccch-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555544   33 899999999999999999999999997665       9999999999999999999988876


Q ss_pred             hH
Q psy6814         149 PE  150 (171)
Q Consensus       149 ~~  150 (171)
                      .+
T Consensus        77 l~   78 (79)
T PF07885_consen   77 LT   78 (79)
T ss_dssp             HH
T ss_pred             hc
Confidence            55

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>PRK10537 voltage-gated potassium channel; Provisional

Probab=99.19  E-value=2.3e-11  Score=105.87  Aligned_cols=68  Identities=16%  Similarity=0.359  Sum_probs=57.9

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhhcc
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA-IPELKIMKILSLRF  161 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~-~~~~~~~~~~~~~~  161 (171)
                      .+++.||+||+++|+||+||||+.|.+..+       |++++.+++.|++++++.++.+.. ..+.++++..+.++
T Consensus       166 ~~s~~dA~y~svvt~tTvGyGdi~p~t~~g-------rl~~i~~ii~Gi~vf~~~is~i~~p~i~~~l~~~~~~~~  234 (393)
T PRK10537        166 IESLSTAFYFSIVTMSTVGYGDIVPVSESA-------RLFTISVIILGITVFATSISAIFGPVIRGNLKRLVKGRI  234 (393)
T ss_pred             CCCHHHHHHhhheeeecccCCCCCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            379999999999999999999999999776       999999999999999999987765 56656666655443

>KOG4404|consensus

Probab=99.16  E-value=3.6e-11  Score=100.84  Aligned_cols=53  Identities=47%  Similarity=0.893  Sum_probs=45.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCc
Q psy6814           4 KFSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIP   57 (171)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~P   57 (171)
                      +....+.+..+...+-++.||.+|... |+|+|.||.|||++|+|||||||.++
T Consensus       156 S~~~l~~i~~~~~~~~i~~gaa~fs~~-E~Wsyfds~YyCFITltTIGFGDyVa  208 (350)
T KOG4404|consen  156 SVYNLVLILFTACILLICCGAAMFSSV-EGWSYFDSYYYCFITLTTIGFGDYVA  208 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHhhcc-cCcchhhhhheeeeeeeeccccchhh
Confidence            344556666777778889999999974 89999999999999999999999999

>KOG1418|consensus

Probab=99.07  E-value=1.1e-10  Score=99.76  Aligned_cols=64  Identities=22%  Similarity=0.511  Sum_probs=58.3

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELKIMKIL  157 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~~~~~~  157 (171)
                      .|+|.+|+|||++++|||||||++|.+..|       |+++++|.++|+.++...++.+.+.....+.+..
T Consensus       113 ~W~f~~al~fs~tv~TTIGYG~i~P~T~~G-------r~~~i~YaliGIPl~li~l~~~g~~l~~~~~~~~  176 (433)
T KOG1418|consen  113 QWSFSSALLFSITVITTIGYGNIAPRTDAG-------RLFTILYALVGIPLMLLILADIGKFLADSLRKLY  176 (433)
T ss_pred             ceecchhHhhhhheeeeccCCcccCCcCcc-------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999888       9999999999999999999988887776655544

>KOG3713|consensus

Probab=99.06  E-value=2.4e-10  Score=100.36  Aligned_cols=51  Identities=18%  Similarity=0.430  Sum_probs=46.2

Q ss_pred             cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814          90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA  147 (171)
Q Consensus        90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~  147 (171)
                      .--++||++||+|||||||.+|.|.+|       |+++..-++.|+.++++-+..+.+
T Consensus       378 IPa~~WWaiVTMTTVGYGDm~P~T~~G-------klvas~cil~GVLvlAlPItiIv~  428 (477)
T KOG3713|consen  378 IPAGFWWAVVTMTTVGYGDMVPVTVLG-------KLVASLCILCGVLVLALPITIIVN  428 (477)
T ss_pred             ccchhheeeEEEeeecccCccccccch-------HHHHHHHHHHhHHHhhcchHhHhh
Confidence            346789999999999999999999998       999999999999999998876664

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=98.87  E-value=2.6e-10  Score=77.57  Aligned_cols=33  Identities=45%  Similarity=1.046  Sum_probs=26.8

Q ss_pred             CCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          31 EPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .|+|++.||+||+++++|||||||+.|. ++.||
T Consensus        20 ~~~~~~~da~yfs~~t~tTvGyGDi~p~-t~~gr   52 (79)
T PF07885_consen   20 SEKWSFIDALYFSFVTITTVGYGDIVPQ-TPAGR   52 (79)
T ss_dssp             SSTTSHHHHHHHHHHHHTT---SSSSTS-SHHHH
T ss_pred             cccCCHHHHHHHHHHHHhcccCCCccCC-ccchH
Confidence            4699999999999999999999999997 56666

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG1419|consensus

Probab=98.84  E-value=1.8e-09  Score=96.11  Aligned_cols=68  Identities=24%  Similarity=0.426  Sum_probs=57.2

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH-----hhHHHHHHHHhhccCC
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA-----IPELKIMKILSLRFND  163 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~-----~~~~~~~~~~~~~~~~  163 (171)
                      +|.||+||..||+|||||||.+|.+..|       |+++..+.++|+..++..-+.+.+     +.|.+=.+++.++|+.
T Consensus       269 TyADALWWG~ITltTIGYGDk~P~TWlG-------r~laa~fsligiSFFALPAGILGSGfALKVQeq~RQKHf~rrr~p  341 (654)
T KOG1419|consen  269 TYADALWWGVITLTTIGYGDKTPQTWLG-------RLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQKHFNRRRNP  341 (654)
T ss_pred             hHHHHHHhhheeEEeeccCCcCcccchh-------HHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHHHHHHhhcch
Confidence            6899999999999999999999999988       999999999999999988877764     4454456666666643

>KOG1545|consensus

Probab=98.64  E-value=6e-09  Score=89.09  Aligned_cols=52  Identities=25%  Similarity=0.438  Sum_probs=45.7

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA  147 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~  147 (171)
                      +.-||+||+++|+|||||||.+|.+..|       |++..+..+.|+..+++-+-++++
T Consensus       393 SIPdaFWwavVTMTTVGYGDm~P~TvgG-------KIVGslCAiaGVLTiALPVPVIVs  444 (507)
T KOG1545|consen  393 SIPDAFWWAVVTMTTVGYGDMVPVTVGG-------KIVGSLCAIAGVLTIALPVPVIVS  444 (507)
T ss_pred             cCcccceEEEEEEEeeccccceecccCc-------eehhhHHhhhhheEecccccEEEe
Confidence            4579999999999999999999999877       999999999999888887765553

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.61  E-value=6.7e-09  Score=97.77  Aligned_cols=54  Identities=20%  Similarity=0.538  Sum_probs=48.5

Q ss_pred             cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814          90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE  150 (171)
Q Consensus        90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~  150 (171)
                      |..|+||+++|+|||||||++|.+..+       ++++++++++|+++.++.++.+.+++.
T Consensus       251 Yi~slYwai~TmtTVGYGDi~p~t~~E-------~i~~i~~ml~g~~~~a~~ig~i~~li~  304 (823)
T PLN03192        251 YISAIYWSITTMTTVGYGDLHAVNTIE-------MIFIIFYMLFNLGLTAYLIGNMTNLVV  304 (823)
T ss_pred             HHHHHHHHHHHHhhccCCCcCCCccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445899999999999999999999876       999999999999999999988887543

>KOG1420|consensus

Probab=98.19  E-value=2.7e-06  Score=76.85  Aligned_cols=69  Identities=14%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             HhhhhhhhcccCC---c---------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHH
Q psy6814          74 IFIPAYVFSSIEP---N---------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFV  141 (171)
Q Consensus        74 i~iga~if~~~e~---~---------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~  141 (171)
                      .+.++.+.+..|+   .         .+|.|++||-++|++||||||+--.+..|       |.|.+++++.|++..+..
T Consensus       261 wltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg-------rlfmvffil~glamfasy  333 (1103)
T KOG1420|consen  261 WLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG-------RLFMVFFILGGLAMFASY  333 (1103)
T ss_pred             HHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh-------HHHHHHHHHHHHHHHHhh
Confidence            3455556665553   2         37889999999999999999999999887       999999999999999988


Q ss_pred             HHHHHHhh
Q psy6814         142 LKTFHAIP  149 (171)
Q Consensus       142 ~~~i~~~~  149 (171)
                      +-.+.+++
T Consensus       334 vpeiieli  341 (1103)
T KOG1420|consen  334 VPEIIELI  341 (1103)
T ss_pred             hHHHHHHH
Confidence            87666654

>KOG3713|consensus

Probab=98.02  E-value=7.8e-06  Score=72.31  Aligned_cols=62  Identities=23%  Similarity=0.471  Sum_probs=42.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhhhccccCCC-----CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814           2 KIKFSYLGSLVITLSILFIFIPAYVFSSIEP-----NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      |++.--+..+++.+.+.-.++.+++++.+.+     --+.+-++.+|++|+|||||||++|. +..|+
T Consensus       339 r~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~~FtSIPa~~WWaiVTMTTVGYGDm~P~-T~~Gk  405 (477)
T KOG3713|consen  339 RRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDTKFTSIPAGFWWAVVTMTTVGYGDMVPV-TVLGK  405 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccchhheeeEEEeeecccCcccc-ccchH
Confidence            4444445555555555555566666654321     34788999999999999999999996 56666

>KOG0498|consensus

Probab=97.95  E-value=1.2e-06  Score=81.23  Aligned_cols=54  Identities=20%  Similarity=0.458  Sum_probs=48.6

Q ss_pred             cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814          90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE  150 (171)
Q Consensus        90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~  150 (171)
                      |.-|+||++.|+||+||||..|.+...       ++|+++++++|+.+.+++++++..+++
T Consensus       295 Y~~aLyw~l~tLstvG~g~~~s~~~~E-------~iFsi~~mi~GllL~A~lIGNmt~~iq  348 (727)
T KOG0498|consen  295 YVYALYWGLSTLSTVGYGLVHANNMGE-------KIFSIFIMLFGLLLFAYLIGNMTALLQ  348 (727)
T ss_pred             HHHHHHHHhhHhhhccCCccCCCCcHH-------HHHHHHHHHHhHHHHHHHHhhHHHhHH
Confidence            567899999999999999999998765       999999999999999999988877554

>PRK10537 voltage-gated potassium channel; Provisional

Probab=97.87  E-value=1.5e-05  Score=69.66  Aligned_cols=32  Identities=31%  Similarity=0.585  Sum_probs=28.0

Q ss_pred             CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ..|++.||+||+++|+||+||||+.|. +..|+
T Consensus       165 ~~~s~~dA~y~svvt~tTvGyGdi~p~-t~~gr  196 (393)
T PRK10537        165 PIESLSTAFYFSIVTMSTVGYGDIVPV-SESAR  196 (393)
T ss_pred             CCCCHHHHHHhhheeeecccCCCCCCC-CHHHH
Confidence            568999999999999999999999995 44455

>KOG1545|consensus

Probab=97.85  E-value=1.8e-05  Score=68.06  Aligned_cols=55  Identities=27%  Similarity=0.476  Sum_probs=34.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhccccC-CC----CCCccCceeeeeeeEeccccCCCCc
Q psy6814           3 IKFSYLGSLVITLSILFIFIPAYVFSSI-EP----NWSYLDSLYFCFISITTIGLGDYIP   57 (171)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~w~~~~a~yF~~~~lTTiGyGd~~P   57 (171)
                      ++.--+..++..+++..+++...++... ++    --+.+|||.|+++|+|||||||..|
T Consensus       356 aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVGYGDm~P  415 (507)
T KOG1545|consen  356 ASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVGYGDMVP  415 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeecccccee
Confidence            3333334444444444444444444322 11    3488999999999999999999999

>KOG3193|consensus

Probab=97.81  E-value=2.4e-05  Score=70.48  Aligned_cols=72  Identities=18%  Similarity=0.382  Sum_probs=48.4

Q ss_pred             hHHHHHHhhhhhhhcccC----CccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHH
Q psy6814          68 TLSILFIFIPAYVFSSIE----PNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLK  143 (171)
Q Consensus        68 ~llli~i~iga~if~~~e----~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~  143 (171)
                      ..+++.++.+.....++.    +..+.+.++||.++|++||||||.+|.-.++       ++-+.+.+.+.+.++.--+.
T Consensus       192 s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~s-------ql~~vi~icval~~ip~q~~  264 (1087)
T KOG3193|consen  192 SVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWAS-------QLCVVILICVALGLIPKQLD  264 (1087)
T ss_pred             HHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchh-------hHHHHHHHHHHHhccHHHHH
Confidence            334455555554444332    2467899999999999999999999998877       45555556566655555444


Q ss_pred             HHH
Q psy6814         144 TFH  146 (171)
Q Consensus       144 ~i~  146 (171)
                      .+.
T Consensus       265 ~l~  267 (1087)
T KOG3193|consen  265 ELG  267 (1087)
T ss_pred             HHH
Confidence            433

>KOG4390|consensus

Probab=97.76  E-value=1.2e-06  Score=75.82  Aligned_cols=49  Identities=20%  Similarity=0.452  Sum_probs=42.8

Q ss_pred             cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .-.|+||+++|+||.||||.+|.+-.|       |++..+..+.|+.++++-+-++
T Consensus       357 IPaaFWYTIVTmTTLGYGDMVp~TIaG-------KIfGsiCSLSGVLVIALPVPvI  405 (632)
T KOG4390|consen  357 IPAAFWYTIVTMTTLGYGDMVPSTIAG-------KIFGSICSLSGVLVIALPVPVI  405 (632)
T ss_pred             CcHhHhhheeeeeeccccccchHHHHH-------HHhhhhhcccceEEEeccccEE
Confidence            457899999999999999999999887       9999999999998888776433

>KOG3684|consensus

Probab=97.66  E-value=1e-05  Score=71.04  Aligned_cols=87  Identities=18%  Similarity=0.280  Sum_probs=66.7

Q ss_pred             HHHHHhhhhhhhcccCC-------ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814          70 SILFIFIPAYVFSSIEP-------NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL  142 (171)
Q Consensus        70 lli~i~iga~if~~~e~-------~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~  142 (171)
                      .+.++++.++++..-|+       .-.+.+++|+..+|+-+|||||++|.+.-|       |-.+++--++|.+..+.++
T Consensus       261 tl~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycG-------r~v~l~tGivGa~~sallv  333 (489)
T KOG3684|consen  261 TLSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCG-------RGVALLTGIVGAGCSSLLV  333 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCcccc-------chHHHHhhhhhhhHHHHHH
Confidence            34555666666665553       224789999999999999999999999988       8889999999999999999


Q ss_pred             HHHHHhhHHH-HHHHHhhccCC
Q psy6814         143 KTFHAIPELK-IMKILSLRFND  163 (171)
Q Consensus       143 ~~i~~~~~~~-~~~~~~~~~~~  163 (171)
                      .++.+=.|.+ -+|+....++|
T Consensus       334 AvisRKLeLt~aEKhVhNFMmD  355 (489)
T KOG3684|consen  334 AVIARKLELTKAEKHVHNFMMD  355 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888755554 55555444444

>KOG1419|consensus

Probab=97.52  E-value=9e-05  Score=66.65  Aligned_cols=31  Identities=42%  Similarity=0.760  Sum_probs=27.3

Q ss_pred             CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          33 NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        33 ~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      -=+|.||+.|..+|+|||||||.+|. ..+|+
T Consensus       267 F~TyADALWWG~ITltTIGYGDk~P~-TWlGr  297 (654)
T KOG1419|consen  267 FPTYADALWWGVITLTTIGYGDKTPQ-TWLGR  297 (654)
T ss_pred             chhHHHHHHhhheeEEeeccCCcCcc-cchhH
Confidence            34899999999999999999999996 55666

>KOG0501|consensus

Probab=97.38  E-value=0.00011  Score=66.83  Aligned_cols=52  Identities=29%  Similarity=0.579  Sum_probs=45.2

Q ss_pred             cccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814          90 YLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI  148 (171)
Q Consensus        90 ~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~  148 (171)
                      |..++||++.++||||||++.|.++..       |+|.+..+++|-.+-+..++.+..+
T Consensus       424 YissLYfTMt~mttvGFGNiA~~TD~E-------KiF~v~mMii~aLLYAtIFG~vTTI  475 (971)
T KOG0501|consen  424 YISSLYFTMTCMTTVGFGNIAPNTDNE-------KIFGVCMMIIGALLYATIFGHVTTI  475 (971)
T ss_pred             ehhhhhhhhhhhhcccccccCCCccHH-------HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            568899999999999999999999876       9999999999988888888655543

>KOG4390|consensus

Probab=97.30  E-value=0.00017  Score=62.85  Aligned_cols=57  Identities=28%  Similarity=0.490  Sum_probs=46.5

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhhhccccCC-----CCCCccCceeeeeeeEeccccCCCCc
Q psy6814           1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIE-----PNWSYLDSLYFCFISITTIGLGDYIP   57 (171)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~w~~~~a~yF~~~~lTTiGyGd~~P   57 (171)
                      ||.|-+-+.-++..+..+-++++..+|+...     +--+.+.||.|+++|+||.||||.+|
T Consensus       317 LKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp  378 (632)
T KOG4390|consen  317 LKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVP  378 (632)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccch
Confidence            4556667777788888888899999998532     13378899999999999999999999

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=96.90  E-value=0.00045  Score=65.42  Aligned_cols=21  Identities=29%  Similarity=0.653  Sum_probs=19.7

Q ss_pred             CceeeeeeeEeccccCCCCcc
Q psy6814          38 DSLYFCFISITTIGLGDYIPG   58 (171)
Q Consensus        38 ~a~yF~~~~lTTiGyGd~~Pg   58 (171)
                      .|+||+++|+|||||||++|-
T Consensus       253 ~slYwai~TmtTVGYGDi~p~  273 (823)
T PLN03192        253 SAIYWSITTMTTVGYGDLHAV  273 (823)
T ss_pred             HHHHHHHHHHhhccCCCcCCC
Confidence            389999999999999999995

>KOG1420|consensus

Probab=96.31  E-value=0.0056  Score=55.98  Aligned_cols=78  Identities=24%  Similarity=0.403  Sum_probs=51.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHHhhhhccccCC---C---------CCCccCceeeeeeeEeccccCCCCccccccchhhhh
Q psy6814           1 LKIKFSYLGSLVITLSILFIFIPAYVFSSIE---P---------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVIT   68 (171)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~l~~~   68 (171)
                      ||++-+.++.=++.+++..++-+|..-+..|   +         .-+|.+..||..+|++|+||||+... ..+|++   
T Consensus       242 lktsssirl~qlvsifisvwltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~-t~lgrl---  317 (1103)
T KOG1420|consen  242 LKTSSSIRLVQLVSIFISVWLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCK-TTLGRL---  317 (1103)
T ss_pred             HhccchhhHHHHHHHHHHHHHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeeh-hhhhHH---
Confidence            5677777788788888766555554432221   2         34789999999999999999999986 444552   


Q ss_pred             HHHHHHhhhhhhhc
Q psy6814          69 LSILFIFIPAYVFS   82 (171)
Q Consensus        69 llli~i~iga~if~   82 (171)
                      ++..+++.|.++|.
T Consensus       318 fmvffil~glamfa  331 (1103)
T KOG1420|consen  318 FMVFFILGGLAMFA  331 (1103)
T ss_pred             HHHHHHHHHHHHHH
Confidence            23334444544444

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=96.05  E-value=0.0025  Score=54.75  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=17.4

Q ss_pred             CccCceeeeeeeEeccccCCCC
Q psy6814          35 SYLDSLYFCFISITTIGLGDYI   56 (171)
Q Consensus        35 ~~~~a~yF~~~~lTTiGyGd~~   56 (171)
                      +|.+||+|+..|.||||||...
T Consensus        84 ~f~~aF~FSveT~tTIGYG~~~  105 (336)
T PF01007_consen   84 SFTSAFLFSVETQTTIGYGSRY  105 (336)
T ss_dssp             THHHHHHHHHHHHTT---SSSE
T ss_pred             chhhheeEEEEEEEEeccCCcc
Confidence            8999999999999999999843

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=95.72  E-value=0.00062  Score=58.45  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=36.1

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      +|.+|++||+-|.||||||...|..+-     |...++..+-.++|+.+.+..++.+
T Consensus        84 ~f~~aF~FSveT~tTIGYG~~~~~~~c-----~~a~~l~~~q~~~g~l~~a~~~Glv  135 (336)
T PF01007_consen   84 SFTSAFLFSVETQTTIGYGSRYPTPEC-----PYAIFLVTIQSLVGLLLDAFMTGLV  135 (336)
T ss_dssp             THHHHHHHHHHHHTT---SSSEB-CSH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhheeEEEEEEEEeccCCcccCCCc-----chhHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999995444321     2225667788888988888877754

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0501|consensus

Probab=94.99  E-value=0.01  Score=54.30  Aligned_cols=24  Identities=42%  Similarity=0.948  Sum_probs=22.0

Q ss_pred             CccCceeeeeeeEeccccCCCCcc
Q psy6814          35 SYLDSLYFCFISITTIGLGDYIPG   58 (171)
Q Consensus        35 ~~~~a~yF~~~~lTTiGyGd~~Pg   58 (171)
                      -|.+|+||+++.+|||||||++|.
T Consensus       423 ~YissLYfTMt~mttvGFGNiA~~  446 (971)
T KOG0501|consen  423 AYISSLYFTMTCMTTVGFGNIAPN  446 (971)
T ss_pred             eehhhhhhhhhhhhcccccccCCC
Confidence            467899999999999999999995

>KOG3193|consensus

Probab=94.83  E-value=0.035  Score=50.71  Aligned_cols=28  Identities=29%  Similarity=0.737  Sum_probs=25.5

Q ss_pred             CCCCCccCceeeeeeeEeccccCCCCcc
Q psy6814          31 EPNWSYLDSLYFCFISITTIGLGDYIPG   58 (171)
Q Consensus        31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pg   58 (171)
                      ...-+...++||.++|++|+||||..|.
T Consensus       213 ~k~i~lf~s~y~v~vtfstvgygd~~pd  240 (1087)
T KOG3193|consen  213 GKRIDLFTSFYFVMVTFSTVGYGDWYPD  240 (1087)
T ss_pred             CceeeeeeeEEEEEEEEeeccccccccc
Confidence            3467999999999999999999999995

>KOG3684|consensus

Probab=92.42  E-value=0.035  Score=49.30  Aligned_cols=47  Identities=28%  Similarity=0.640  Sum_probs=35.3

Q ss_pred             HHHHHhhhhccccCC-------CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          17 ILFIFIPAYVFSSIE-------PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        17 ~~~~~~~~~~~~~~~-------~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +.++++.+-++..+|       +.=++.++..+-.+|+-+|||||++|+ +.+|+
T Consensus       262 l~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~-TycGr  315 (489)
T KOG3684|consen  262 LSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPN-TYCGR  315 (489)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCC-ccccc
Confidence            345566665554332       233588999999999999999999998 88887

>KOG3827|consensus

Probab=92.17  E-value=0.32  Score=42.43  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=21.2

Q ss_pred             CccCceeeeeeeEeccccCCCCc
Q psy6814          35 SYLDSLYFCFISITTIGLGDYIP   57 (171)
Q Consensus        35 ~~~~a~yF~~~~lTTiGyGd~~P   57 (171)
                      +|.+||.|++.|=||||||.-.+
T Consensus       112 sf~sAFLFSiETQtTIGYG~R~v  134 (400)
T KOG3827|consen  112 SFTSAFLFSIETQTTIGYGFRYV  134 (400)
T ss_pred             chhhhheeeeeeeeeeecccccc
Confidence            78999999999999999997766

>KOG0500|consensus

Probab=87.26  E-value=0.24  Score=44.52  Aligned_cols=49  Identities=22%  Similarity=0.375  Sum_probs=35.5

Q ss_pred             cceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814          92 DSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI  148 (171)
Q Consensus        92 da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~  148 (171)
                      -++|||-.|+||+|  |..|.....+      -.|.++=.++|+.+++..++.++++
T Consensus       186 ~S~YWStLTlTTiG--e~P~P~t~~e------y~F~I~d~LiGvliFAtIvG~VGsm  234 (536)
T KOG0500|consen  186 YSLYWSTLTLTTIG--EQPPPVTSSE------YAFVIVDTLIGVLIFATIVGNVGSM  234 (536)
T ss_pred             HHHHHHhhhhhhcc--CCCCCCcCch------hhHHHHHHHHHHHHHhhhhccHhHH
Confidence            47899999999997  3322222221      5778888899999999998766654

>KOG0498|consensus

Probab=86.30  E-value=0.17  Score=47.63  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             cCceeeeeeeEeccccCCCCcc
Q psy6814          37 LDSLYFCFISITTIGLGDYIPG   58 (171)
Q Consensus        37 ~~a~yF~~~~lTTiGyGd~~Pg   58 (171)
                      .-|+||+++++||+||||.+|.
T Consensus       296 ~~aLyw~l~tLstvG~g~~~s~  317 (727)
T KOG0498|consen  296 VYALYWGLSTLSTVGYGLVHAN  317 (727)
T ss_pred             HHHHHHHhhHhhhccCCccCCC
Confidence            3479999999999999999994

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=82.25  E-value=0.12  Score=38.80  Aligned_cols=54  Identities=30%  Similarity=0.461  Sum_probs=34.4

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhh-hHHHHHHHHHHHHHHHH
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIV-SVYLILSLLFTMFVLKT  144 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~-~~~i~~Gl~~~~~~~~~  144 (171)
                      ++.+|+|+.+.++|+.|+||..|.....  .++...++. .+.++.++.++.+.++.
T Consensus       145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~nlliav  199 (200)
T PF00520_consen  145 SFGESLYWLFQTMTGEGWGDVMPSCMSA--RSWLAVIFFISFIIIVSILLLNLLIAV  199 (200)
T ss_dssp             SHHHHHHHHHHHHTTTTCCCCHHHHHHT--TSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCccccccccccc--cchhHhHHhhhhhhhHHHHHHHHHHhc
Confidence            5678999999999999999999972100  011225555 44444555666665543

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
3ukm_A	280	Crystal Structure Of The Human Two Pore Domain Pota		4e-17
3um7_A	309	Crystal Structure Of The Human Two Pore Domain K+ I		1e-07

>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium Ion Channel K2p1 (Twik-1) Length = 280

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 67  ITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKXX 126
           +T+S  F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYK  
Sbjct: 180 VTVSCFF-FIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIG 238
Query: 127 XXXXXXXXXXFTMFVLKTFHAIPELKIMK 155
                       + VL+TF  + ELK  +
Sbjct: 239 ITCYLLLGLIAMLVVLETFCELHELKKFR 267

>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion Channel Traak (K2p4.1) Length = 309

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 71  ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQE 118
           +LF+  P +VF  +E +WS L+++YF  +++TT+G GDY+ G  P+Q+
Sbjct: 207 LLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	7e-18
3um7_A	309	Potassium channel subfamily K member 4; potassium	2e-12
3um7_A	309	Potassium channel subfamily K member 4; potassium	2e-08
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	2e-08
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	3e-07
1lnq_A	336	MTHK channels, potassium channel related protein;	6e-07
1lnq_A	336	MTHK channels, potassium channel related protein;	8e-06
3ouf_A	97	Potassium channel protein; ION channel, membrane,	2e-05
3ouf_A	97	Potassium channel protein; ION channel, membrane,	5e-05
2q67_A	114	Potassium channel protein; inverted teepee, helix	3e-05
2q67_A	114	Potassium channel protein; inverted teepee, helix	4e-05
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	6e-05
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	2e-04
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	4e-04
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	5e-04

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280

 Score = 77.6 bits (190), Expect = 7e-18
 Identities = 50/147 (34%), Positives = 79/147 (53%)

Query: 11  LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
             I  S++ I       +++    +   +           G    +  + +   L     
Sbjct: 123 FCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTV 182

Query: 71  ILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVY 130
             F FIPA VFS +E +W++L+S YFCFIS++TIGLGDY+PGE   Q+F+ LYKI ++ Y
Sbjct: 183 SCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCY 242

Query: 131 LILSLLFTMFVLKTFHAIPELKIMKIL 157
           L+L L+  + VL+TF  + ELK  + +
Sbjct: 243 LLLGLIAMLVVLETFCELHELKKFRKM 269

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 66  VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKI 125
           ++   +LF+  P +VF  +E +WS L+++YF  +++TT+G GDY+ G  P+Q+    Y+ 
Sbjct: 202 LLIGCLLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD-SPAYQP 259

Query: 126 IVSVYLILSLLFTMFVLKTFHAIPELKIMKIL 157
           +V  +++L L +   VL T      +   +  
Sbjct: 260 LVWFWILLGLAYFASVLTTIGNWLRVVSRRTR 291

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Length = 309

 Score = 51.4 bits (122), Expect = 2e-08
 Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 12  VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLSI 71
           ++   +LF+  P +VF  +E +WS L+++YF  +++TT+G GDY+ G            +
Sbjct: 202 LLIGCLLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPL 260

Query: 72  LFIFI 76
           ++ +I
Sbjct: 261 VWFWI 265

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 2/91 (2%)

Query: 65  LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
           ++  L+ L +      +S++E     LD+LYF  +++TT+G G++ P     + F  LY 
Sbjct: 29  VLFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILY- 86

Query: 125 IIVSVYLILSLLFTMFVLKTFHAIPELKIMK 155
           I + + L+   +  + V     +I   +  +
Sbjct: 87  IFIGIGLVFGFIHKLAVNVQLPSILSNRKKE 117

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
          ++  L+ L +      +S++E     LD+LYF  +++TT+G G++ P  +  G +   L 
Sbjct: 29 VLFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLTTVGDGNFSP-QTDFGKVFTILY 86

Query: 71 ILF 73
          I  
Sbjct: 87 IFI 89

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 47.1 bits (112), Expect = 6e-07
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 5  FSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS 64
               + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P  + LG 
Sbjct: 16 LKVPATRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSP-STPLGM 73

Query: 65 LV-ITLSILFIFIPAYVFSSI 84
             +TL +L I   A     +
Sbjct: 74 YFTVTLIVLGIGTFAVAVERL 94

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 3/99 (3%)

Query: 59  LSYLGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQE 118
           L    + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P       
Sbjct: 16  LKVPATRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLGMY 74

Query: 119 FKSLYKI--IVSVYLILSLLFTMFVLKTFHAIPELKIMK 155
           F     +  I +  + +  L    + +    +  L  + 
Sbjct: 75  FTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGLIDVA 113

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 65  LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
           ++  L+IL +      +S++E     +D+LYF  +++TT+G GD+ P     + F  LY 
Sbjct: 9   VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILY- 66

Query: 125 IIVSVYLILSLLFTMFV 141
           I + + L+   +  + V
Sbjct: 67  IFIGIGLVFGFIHKLAV 83

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
          ++  L+IL +      +S++E     +D+LYF  +++TT+G GD+ P  +  G +   L 
Sbjct: 9  VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGYGDFSP-QTDFGKIFTILY 66

Query: 71 ILF 73
          I  
Sbjct: 67 IFI 69

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 65  LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYK 124
           ++  L+IL +      +S++E     +D+LYF  +++TT+G G++ P     + F  LY 
Sbjct: 26  VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILY- 83

Query: 125 IIVSVYLILSLLFTMFV 141
           I + + L+   +  + V
Sbjct: 84  IFIGIGLVFGFIHKLAV 100

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 11 LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITLS 70
          ++  L+IL +      +S++E     +D+LYF  +++TT+G G++ P   +     I   
Sbjct: 26 VLFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYI 84

Query: 71 ILFIFIPAYVFSSI 84
           + I +       +
Sbjct: 85 FIGIGLVFGFIHKL 98

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITL 69
          + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P          TL
Sbjct: 4  TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTL 62

Query: 70 SILFIFIPAYVFSSI 84
           +L I   A     +
Sbjct: 63 IVLGIGTFAVAVERL 77

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 64  SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
           + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P       F    
Sbjct: 4   TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTL 62

Query: 124 KII 126
            ++
Sbjct: 63  IVL 65

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 1  LKIKFSYLGSLVITLSILFIFI----PAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYI 56
                 L  +++  S L +      P     +         +L++   + TT+G GD  
Sbjct: 8  AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYP------RALWWSVETATTVGYGDLY 61

Query: 57 PGLSY---LGSLVITLSILFIFIPAYVFSS 83
          P   +   +  +V+   I    +     ++
Sbjct: 62 PVTLWGRLVAVVVMVAGITSFGLVTAALAT 91

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 12/84 (14%), Positives = 29/84 (34%), Gaps = 13/84 (15%)

Query: 13  ITLSILFIFIPAYVFSSI----------EPNWSYLDSLYFCFISITTIGLGDYIPGLSY- 61
              + + + I     S +              +Y  +L++   + TT+G GD  P   + 
Sbjct: 35  AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 94

Query: 62  --LGSLVITLSILFIFIPAYVFSS 83
             +  +V+   I    +     ++
Sbjct: 95  RLVAVVVMVAGITSFGLVTAALAT 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.97
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.95
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.67
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.64
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.63
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.62
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.61
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.59
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.58
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.55
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.54
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.51
1lnq_A	336	MTHK channels, potassium channel related protein;	99.43
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.33
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.27
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	99.22
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	99.17
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.14
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.13
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	99.1
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.09
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.05
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.04
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.04
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.0
1xl4_A	301	Inward rectifier potassium channel; integral membr	98.95
1p7b_A	333	Integral membrane channel and cytosolic domains; t	98.95
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	98.93
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	98.83
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.82
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	98.77
2a9h_A	155	Voltage-gated potassium channel; potassium channel	98.76
1lnq_A	336	MTHK channels, potassium channel related protein;	98.61
1p7b_A	333	Integral membrane channel and cytosolic domains; t	98.47
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	98.44
1xl4_A	301	Inward rectifier potassium channel; integral membr	98.36
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	98.34
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	98.32
3sya_A	340	G protein-activated inward rectifier potassium CH;	98.23
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.04
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	97.89
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	97.71
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	97.67
3sya_A	340	G protein-activated inward rectifier potassium CH;	97.45
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	97.37
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	96.01

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.97  E-value=4.2e-33  Score=230.41  Aligned_cols=134  Identities=43%  Similarity=0.812  Sum_probs=109.7

Q ss_pred             CCCCccCceeeeeeeEeccccCCCCcc----------------------c--------------------cccch-----
Q psy6814          32 PNWSYLDSLYFCFISITTIGLGDYIPG----------------------L--------------------SYLGS-----   64 (171)
Q Consensus        32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pg----------------------l--------------------~~~g~-----   64 (171)
                      ++|+|.||+||+++|+|||||||++|.                      +                    ++++.     
T Consensus        90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  169 (280)
T 3ukm_A           90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVV  169 (280)
T ss_dssp             CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC------CCHHH
T ss_pred             CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence            579999999999999999999999992                      0                    11220     


Q ss_pred             -------hhhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHH
Q psy6814          65 -------LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLF  137 (171)
Q Consensus        65 -------l~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~  137 (171)
                             +.+.++++++++++.+++..|++|++.||+|||++|+|||||||++|.+++++++.+.||+++++|+++|+++
T Consensus       170 ~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~  249 (280)
T 3ukm_A          170 AIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIA  249 (280)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHH
Confidence                   2234456777899999999887899999999999999999999999999999888888999999999999999


Q ss_pred             HHHHHHHHHHhhHHH-HHHHHhhccCCcC
Q psy6814         138 TMFVLKTFHAIPELK-IMKILSLRFNDPG  165 (171)
Q Consensus       138 ~~~~~~~i~~~~~~~-~~~~~~~~~~~~~  165 (171)
                      +++.++.+.++.+.+ +++.++++|+.++
T Consensus       250 ~~~~~~~i~~~~~~~~l~~~~~~~~~~~~  278 (280)
T 3ukm_A          250 MLVVLETFCELHELKKFRKMFYVKKDKDE  278 (280)
T ss_dssp             HHHHHHHHHTSHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence            999999999987777 8888887775554

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.95  E-value=6.4e-30  Score=214.01  Aligned_cols=117  Identities=31%  Similarity=0.648  Sum_probs=97.6

Q ss_pred             CCCCccCceeeeeeeEeccccCCCCcc----------------------c----------------------cccc----
Q psy6814          32 PNWSYLDSLYFCFISITTIGLGDYIPG----------------------L----------------------SYLG----   63 (171)
Q Consensus        32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pg----------------------l----------------------~~~g----   63 (171)
                      ++|+|.||+||+++|+|||||||++|.                      +                      .+++    
T Consensus       112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~  191 (309)
T 3um7_A          112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPE  191 (309)
T ss_dssp             -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CC
T ss_pred             CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchh
Confidence            359999999999999999999999992                      0                      0111    


Q ss_pred             h--------hhhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHH
Q psy6814          64 S--------LVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSL  135 (171)
Q Consensus        64 ~--------l~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl  135 (171)
                      +        ..+..+++++++++.+++..| +|++.||+|||++|+|||||||++|.++.++. +|.||+++++|++.|+
T Consensus       192 ~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E-~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~-~~~y~~~~~~~il~Gl  269 (309)
T 3um7_A          192 LVRVLSAMLFLLIGCLLFVLTPTFVFCYME-DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQD-SPAYQPLVWFWILLGL  269 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-CCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCC-CSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHhheeccccCCCCCCCccccc-cchHHHHHHHHHHHHH
Confidence            0        112234567788999999988 99999999999999999999999999998865 4679999999999999


Q ss_pred             HHHHHHHHHHHHhhH
Q psy6814         136 LFTMFVLKTFHAIPE  150 (171)
Q Consensus       136 ~~~~~~~~~i~~~~~  150 (171)
                      +++++.++.+.+..+
T Consensus       270 ~~~a~~~~~i~~~~~  284 (309)
T 3um7_A          270 AYFASVLTTIGNWLR  284 (309)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887654

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.67  E-value=2.5e-18  Score=121.24  Aligned_cols=82  Identities=24%  Similarity=0.509  Sum_probs=70.7

Q ss_pred             hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .+..+.+.++.++..++..| +|++.||+||+++|+|||||||++|.++.+       |++++++++.|+.+++..++.+
T Consensus        10 ~~~~~~~~~~~g~~~~~~~e-~~~~~~a~yf~~~T~tTvGyGdi~P~t~~g-------r~~~~~~~~~G~~~~~~~i~~i   81 (97)
T 3ouf_A           10 LFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGYGDFSPQTDFG-------KIFTILYIFIGIGLVFGFIHKL   81 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667778888888777 899999999999999999999999998776       9999999999999999999999


Q ss_pred             HHhhHHH-HHH
Q psy6814         146 HAIPELK-IMK  155 (171)
Q Consensus       146 ~~~~~~~-~~~  155 (171)
                      .+..+.+ +++
T Consensus        82 ~~~~~~~~~~~   92 (97)
T 3ouf_A           82 AVNVQLPSILS   92 (97)
T ss_dssp             HHHTHHHHHHH
T ss_pred             HHHHhHHHHHH
Confidence            9877654 444

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.64  E-value=7.7e-18  Score=115.22  Aligned_cols=75  Identities=24%  Similarity=0.399  Sum_probs=67.0

Q ss_pred             hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .+.+++..++.++..++..| +|++.||+||+++|+|||||||++|.++.+       |++++++++.|+..+++.++.+
T Consensus         6 ~~~l~~~~~~~g~~~~~~~e-~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~-------r~~~~~~~~~G~~~~~~~~~~i   77 (82)
T 3ldc_A            6 ILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPHTPLG-------MYFTCTLIVLGIGTFAVAVERL   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34555677788999999888 999999999999999999999999998766       9999999999999999999988


Q ss_pred             HHh
Q psy6814         146 HAI  148 (171)
Q Consensus       146 ~~~  148 (171)
                      .+.
T Consensus        78 ~~~   80 (82)
T 3ldc_A           78 LEF   80 (82)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.63  E-value=3.3e-17  Score=116.41  Aligned_cols=82  Identities=13%  Similarity=0.080  Sum_probs=69.7

Q ss_pred             hhhHHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHH
Q psy6814          66 VITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTM  139 (171)
Q Consensus        66 ~~~llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~  139 (171)
                      .+..+++++++++.+++..|+.      +++.||+||+++|+|||||||++|.+..+       |++++++++.|+.+++
T Consensus        11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~l~G~~~~~   83 (103)
T 2k1e_A           11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG-------RKVAEQVMKAGIEVFA   83 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC-------THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH-------HHHHHHHHHHHHHHHH
Confidence            3445566777888888888832      48999999999999999999999999877       9999999999999999


Q ss_pred             HHHHHHHHhhHHHHH
Q psy6814         140 FVLKTFHAIPELKIM  154 (171)
Q Consensus       140 ~~~~~i~~~~~~~~~  154 (171)
                      +.++.+.+...++.+
T Consensus        84 ~~~~~i~~~~~~~~~   98 (103)
T 2k1e_A           84 LVTAALATDFVRREE   98 (103)
T ss_dssp             HTHHHHHTTGGGHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999987765533

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.62  E-value=1.3e-17  Score=120.72  Aligned_cols=77  Identities=22%  Similarity=0.481  Sum_probs=66.8

Q ss_pred             hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .+.++..++..|+.++...| +|++.||+||+++|+|||||||++|.++.+       |++++++++.|+.+++..++.+
T Consensus        27 ~~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~T~tTvGyGdi~P~t~~g-------r~~~~~~~~~G~~~~~~~~~~l   98 (114)
T 2q67_A           27 LFVLTILTLISGTIFYSTVE-GLRPIDALYFSVVTLTTVGAGNFSPQTDFG-------KIFTILYIFIGIGLVFGFIHKL   98 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHTSCCCSSCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhcceeCCCCccCCHhH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566778888888777 899999999999999999999999998766       9999999999999999999988


Q ss_pred             HHhhH
Q psy6814         146 HAIPE  150 (171)
Q Consensus       146 ~~~~~  150 (171)
                      .+..+
T Consensus        99 ~~~~~  103 (114)
T 2q67_A           99 AVNVQ  103 (114)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            87554

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.61  E-value=1.7e-17  Score=123.49  Aligned_cols=79  Identities=16%  Similarity=0.253  Sum_probs=67.6

Q ss_pred             hhHHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHH
Q psy6814          67 ITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMF  140 (171)
Q Consensus        67 ~~llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~  140 (171)
                      +..+++++++++.+++..|++      |++.||+||+++|+|||||||++|.+..+       |+++++++++|++++++
T Consensus        12 ~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~-------r~~~~~~~~~G~~~~~~   84 (139)
T 3eff_K           12 TVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RLVAVVVMVAGITSFGL   84 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH-------HHHHHHHHHHHHHHHHH
Confidence            445566777888888888843      99999999999999999999999998776       99999999999999999


Q ss_pred             HHHHHHHhhHHH
Q psy6814         141 VLKTFHAIPELK  152 (171)
Q Consensus       141 ~~~~i~~~~~~~  152 (171)
                      .++.+.+...++
T Consensus        85 ~~~~i~~~~~~~   96 (139)
T 3eff_K           85 VTAALATWFVGR   96 (139)
T ss_dssp             HHHHHTTTTTHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888754333

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.59  E-value=2.3e-17  Score=124.23  Aligned_cols=74  Identities=22%  Similarity=0.475  Sum_probs=64.8

Q ss_pred             hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .+.+++++++.++..+...| +|++.||+||+++|+|||||||++|.+..+       |++++++++.|+++++..++.+
T Consensus        30 ~~~~~~~~~~~g~~~~~~~e-~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~-------r~~~~~~~~~g~~~~~~~~~~~  101 (148)
T 3vou_A           30 LFVLTFLTLTSGTIFYSTVE-GLRPLDALYFSVVTLTTVGDGNFSPQTDFG-------KVFTILYIFIGIGLVFGFIHKL  101 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHTTCCCSSCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHccCCCCCCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666777888888777 899999999999999999999999998766       9999999999999999999887


Q ss_pred             HH
Q psy6814         146 HA  147 (171)
Q Consensus       146 ~~  147 (171)
                      .+
T Consensus       102 ~~  103 (148)
T 3vou_A          102 AV  103 (148)
T ss_dssp             HC
T ss_pred             HH
Confidence            75

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.58  E-value=3.8e-17  Score=121.79  Aligned_cols=56  Identities=23%  Similarity=0.495  Sum_probs=52.5

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP  149 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~  149 (171)
                      .|++.||+||+++|+|||||||++|.+..|       |++++++++.|+++++..++.+.+..
T Consensus        41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~~~g~~~~~~~~~~i~~~~   96 (137)
T 4h33_A           41 INNYPDALWWAIVTATTVGYGDIVPVTPIG-------RILASIMMLFGIAFIGMITSTITNFF   96 (137)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHcccCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999998776       99999999999999999999988754

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.55  E-value=1e-16  Score=121.99  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=66.0

Q ss_pred             hHHHHHHhhhhhhhcccCCcc-------ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHH
Q psy6814          68 TLSILFIFIPAYVFSSIEPNW-------SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMF  140 (171)
Q Consensus        68 ~llli~i~iga~if~~~e~~w-------s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~  140 (171)
                      ..+++++++++.+++..| +|       ++.||+||+++|+|||||||++|.+..|       |++++++++.|+.++++
T Consensus        57 ~~~~~~i~~~a~~~~~~E-~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g-------r~~~~~~~l~Gv~~~a~  128 (155)
T 2a9h_A           57 VLLVIVLLAGSYLAVLAE-RGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG-------RCVAVVVMVAGITSYGL  128 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-ccCCCCccCcccceeheeeeeeecccCCCCCCCChhH-------HHHHHHHHHHHHHHHHH
Confidence            344556677888888777 55       8999999999999999999999998766       99999999999999999


Q ss_pred             HHHHHHHhhHHH
Q psy6814         141 VLKTFHAIPELK  152 (171)
Q Consensus       141 ~~~~i~~~~~~~  152 (171)
                      .++.+.+...++
T Consensus       129 ~~~~i~~~~~~~  140 (155)
T 2a9h_A          129 VFAAVATWFVGR  140 (155)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHH
Confidence            999988866544

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.54  E-value=3.5e-16  Score=114.38  Aligned_cols=79  Identities=15%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814          69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL  142 (171)
Q Consensus        69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~  142 (171)
                      .+.+.+.+++.+++..|++      |++.||+||+++|+|||||||++|.++.|       |++++++++.|+..+++.+
T Consensus        35 ~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------r~~~~~~~~~Gi~~~~~~~  107 (122)
T 2ih3_C           35 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVT  107 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH-------HHHHHHHHHHHHHHHHHHH
Confidence            3445556777777777742      89999999999999999999999998776       9999999999999999999


Q ss_pred             HHHHHhhHHHHH
Q psy6814         143 KTFHAIPELKIM  154 (171)
Q Consensus       143 ~~i~~~~~~~~~  154 (171)
                      +.+.+..+++.+
T Consensus       108 ~~i~~~~~~~~~  119 (122)
T 2ih3_C          108 AALATWFVGREQ  119 (122)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999987775543

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.51  E-value=2.7e-16  Score=120.53  Aligned_cols=73  Identities=18%  Similarity=0.310  Sum_probs=63.2

Q ss_pred             HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814          69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL  142 (171)
Q Consensus        69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~  142 (171)
                      .+++++++++.+++..|++      |++.||+||+++|+|||||||++|.+..+       |+++++++++|++++++.+
T Consensus        41 ~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~-------r~~~~~~~l~G~~~~~~~~  113 (166)
T 3pjs_K           41 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RLVAVVVMVAGITSFGLVT  113 (166)
T ss_dssp             SSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTT-------TTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHH
Confidence            3455667778888887742      99999999999999999999999999887       9999999999999999999


Q ss_pred             HHHHHh
Q psy6814         143 KTFHAI  148 (171)
Q Consensus       143 ~~i~~~  148 (171)
                      +.+.+.
T Consensus       114 ~~i~~~  119 (166)
T 3pjs_K          114 AALATW  119 (166)
T ss_dssp             TTSSSS
T ss_pred             HHHHHH
Confidence            877653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=99.43  E-value=1.5e-15  Score=126.76  Aligned_cols=91  Identities=23%  Similarity=0.333  Sum_probs=67.2

Q ss_pred             hhhHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHH
Q psy6814          66 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTF  145 (171)
Q Consensus        66 ~~~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i  145 (171)
                      .+.+++++++.++.+|+..| +|++.||+||+++|+|||||||++|.+..+       |++++++++.|+.++++.++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~e-~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~-------r~~~~~~~~~g~~~~~~~~~~~   94 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLG-------MYFTVTLIVLGIGTFAVAVERL   94 (336)
T ss_dssp             STTTTTTSHHHHTTTTTTSS-SCCSSTTHHHHHHHHTTCCCSSCCCCCSSH-------HHHHTHHHHTTSTTTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHhhcccCCCCCCCCcCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566778888888888 899999999999999999999999998776       9999999999999999999999


Q ss_pred             HHhhHHH-HHHHHhhccCCc
Q psy6814         146 HAIPELK-IMKILSLRFNDP  164 (171)
Q Consensus       146 ~~~~~~~-~~~~~~~~~~~~  164 (171)
                      .+....+ .++..+++++++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~  114 (336)
T 1lnq_A           95 LEFLINREQMKLMGLIDVAK  114 (336)
T ss_dssp             TTTC----------------
T ss_pred             HHHHHHHHHHHHHhhhhhcc
Confidence            9865554 666666655543

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.33  E-value=8e-14  Score=110.30  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=65.4

Q ss_pred             HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814          69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL  142 (171)
Q Consensus        69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~  142 (171)
                      .+.+.+.+++..++..|++      |++.||+||+++|+|||||||++|.+..|       |++++++++.|+.++++.+
T Consensus       139 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~-------~~~~~~~~~~G~~~~~~~i  211 (223)
T 1orq_C          139 AVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG-------KVIGIAVMLTGISALTLLI  211 (223)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH-------HHHHHHHHHHHHHHHHHHH
Confidence            3445556677777777742      89999999999999999999999998666       9999999999999999999


Q ss_pred             HHHHHhhHHH
Q psy6814         143 KTFHAIPELK  152 (171)
Q Consensus       143 ~~i~~~~~~~  152 (171)
                      +.+.+..+++
T Consensus       212 ~~i~~~~~~~  221 (223)
T 1orq_C          212 GTVSNMFQKI  221 (223)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999887754

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.27  E-value=1.5e-13  Score=114.82  Aligned_cols=59  Identities=17%  Similarity=0.287  Sum_probs=54.3

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELK  152 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~  152 (171)
                      +|++.||+||+++|+|||||||++|.+..|       |+++++|+++|+.+++..++.+.+.....
T Consensus       113 ~w~~~~a~yf~~~t~tTvGYGdi~P~T~~g-------k~~~i~~~l~Gi~~~~~~~~~i~~~l~~~  171 (309)
T 3um7_A          113 AWDLGSAFFFSGTIITTIGYGNVALRTDAG-------RLFCIFYALVGIPLFGILLAGVGDRLGSS  171 (309)
T ss_dssp             CCSHHHHHHHHHHHHTSCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChhhhhHhhheeeeecccCCCCCCCccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            799999999999999999999999999877       99999999999999999998888765443

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=99.22  E-value=8.3e-13  Score=117.25  Aligned_cols=84  Identities=19%  Similarity=0.373  Sum_probs=63.3

Q ss_pred             HHHHhhhhhhhcc----cCC-ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHH-
Q psy6814          71 ILFIFIPAYVFSS----IEP-NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKT-  144 (171)
Q Consensus        71 li~i~iga~if~~----~e~-~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~-  144 (171)
                      ++.+++++.+|+.    .|+ +|+|.||+||+++|+|||||||++|.+..+       |++++++++.|+.++++.++. 
T Consensus        28 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~-------~~~~~~~~~~g~~~~~~~~~~~  100 (565)
T 4gx0_A           28 LVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAG-------YLFASIVTVSGVIFLDIILPFG  100 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444443    442 399999999999999999999999998766       999999999999999999987 


Q ss_pred             HHHhhHHH-HHHHHhhcc
Q psy6814         145 FHAIPELK-IMKILSLRF  161 (171)
Q Consensus       145 i~~~~~~~-~~~~~~~~~  161 (171)
                      +.+..... +++..+.++
T Consensus       101 ~~~~~~~~~~~~~~~~~~  118 (565)
T 4gx0_A          101 FVSMFLAPWIERRLRYHP  118 (565)
T ss_dssp             HHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            55544434 555555443

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=99.17  E-value=1.1e-12  Score=108.36  Aligned_cols=58  Identities=22%  Similarity=0.475  Sum_probs=53.3

Q ss_pred             CccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814          86 PNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE  150 (171)
Q Consensus        86 ~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~  150 (171)
                      ++|++.||+||+++|+|||||||++|.++.|       |+++++|+++|+.++...++.+.+...
T Consensus        90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~G-------k~f~~~~~l~Gi~~~~~~~~~~~~~l~  147 (280)
T 3ukm_A           90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGG-------KAFCIIYSVIGIPFTLLFLTAVVQRIT  147 (280)
T ss_dssp             CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhcchhheeeeeeccccCCcCCCCchh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999877       999999999999999999988876443

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.14  E-value=1.9e-12  Score=88.14  Aligned_cols=53  Identities=32%  Similarity=0.516  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +.++.+++.++..++..++. .|+|++.||+||+++|+|||||||++|. +..||
T Consensus         4 ~~~~~l~~~~~~~g~~~~~~-~e~~~~~~a~yf~~~T~tTvGyGdi~P~-t~~~r   56 (82)
T 3ldc_A            4 TRILLLVLAVIIYGTAGFHF-IEGESWTVSLYWTFVTIATVGYGDYSPH-TPLGM   56 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcccCCCCCCCC-CccHH
Confidence            45566666778888988876 4799999999999999999999999996 55556

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.13  E-value=4.5e-12  Score=88.98  Aligned_cols=55  Identities=27%  Similarity=0.544  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814           8 LGSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .+..++.++++++..|+..+.. .|+|++.||+||+++|+|||||||++|. +..||
T Consensus         6 ~~~~~~~~~~~~~~~g~~~~~~-~e~~~~~~a~yf~~~T~tTvGyGdi~P~-t~~gr   60 (97)
T 3ouf_A            6 EFQVLFVLTILTLISGTIFYST-VEGLRPIDALYFSVVTLTTVGYGDFSPQ-TDFGK   60 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHccCCCCCCCC-CccHH
Confidence            4455566666777888888875 5789999999999999999999999996 55555

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=99.10  E-value=6.7e-12  Score=105.36  Aligned_cols=76  Identities=14%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             HHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHH
Q psy6814          71 ILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKT  144 (171)
Q Consensus        71 li~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~  144 (171)
                      ++.+.+++.+++..|++      .++.||+||+++|+||+||||+.|.+..+       |++++++++.|+.++++.++.
T Consensus       137 ~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~-------~~~~~~~~~~g~~~~~~~~~~  209 (355)
T 3beh_A          137 GVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG-------RVLAGAVMMSGIGIFGLWAGI  209 (355)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666621      27899999999999999999999998766       999999999999999999998


Q ss_pred             HHHhhHHHH
Q psy6814         145 FHAIPELKI  153 (171)
Q Consensus       145 i~~~~~~~~  153 (171)
                      +.+..+++.
T Consensus       210 i~~~~~~~~  218 (355)
T 3beh_A          210 LATGFYQEV  218 (355)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887666553

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.09  E-value=1.2e-11  Score=91.66  Aligned_cols=55  Identities=22%  Similarity=0.424  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCC------CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814           9 GSLVITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~------w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +..++.++++++++++..+...+.+      |++.||+||+++|+|||||||++|. +..|+
T Consensus         8 ~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~-t~~~r   68 (139)
T 3eff_K            8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV-TLWGR   68 (139)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCC-SSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCC-CcCHH
Confidence            3444555556677777777655432      9999999999999999999999996 55555

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.05  E-value=1.5e-11  Score=88.75  Aligned_cols=53  Identities=26%  Similarity=0.591  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ..++.++++++.+|+..+.. .|+|++.||+||+++|+|||||||++|. +..|+
T Consensus        25 ~~~~~~~~~~~~~g~~~~~~-~e~~~~~~a~y~~~~T~tTvGyGdi~P~-t~~gr   77 (114)
T 2q67_A           25 QVLFVLTILTLISGTIFYST-VEGLRPIDALYFSVVTLTTVGAGNFSPQ-TDFGK   77 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHTSCCCSSCCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHhcceeCCCCccC-CHhHH
Confidence            44555666777888888875 4789999999999999999999999996 55555

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.04  E-value=2.6e-11  Score=90.89  Aligned_cols=54  Identities=26%  Similarity=0.500  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814           9 GSLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +.+++.++++++..|+..+.. .|+|++.||+||+++|+|||||||++|. +..|+
T Consensus        27 ~~~~~~~~~~~~~~g~~~~~~-~e~~~~~~a~y~~~~t~tTvGyGd~~p~-t~~~r   80 (148)
T 3vou_A           27 FQVLFVLTFLTLTSGTIFYST-VEGLRPLDALYFSVVTLTTVGDGNFSPQ-TDFGK   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHTTCCCSSCCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHccCCCCCCCC-CccHH
Confidence            344555666777888888775 5789999999999999999999999996 44445

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.04  E-value=2.7e-11  Score=89.95  Aligned_cols=43  Identities=28%  Similarity=0.513  Sum_probs=34.1

Q ss_pred             HhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          21 FIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        21 ~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ..++..+...++.|++.||+||+++|+|||||||++|. +..|+
T Consensus        29 ~~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~-t~~gr   71 (137)
T 4h33_A           29 IIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPV-TPIGR   71 (137)
T ss_dssp             HTHHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCC-CHhHH
Confidence            33444444456789999999999999999999999996 55555

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.00  E-value=1.2e-10  Score=82.35  Aligned_cols=52  Identities=21%  Similarity=0.186  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHhhhhccccCCC------CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          12 VITLSILFIFIPAYVFSSIEP------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .+.++++++++++..+...|.      .|++.||+||+++|+|||||||++|. +..||
T Consensus        11 ~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~-t~~gr   68 (103)
T 2k1e_A           11 AEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPV-TEEGR   68 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCC-SSSCT
T ss_pred             HHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCC-ChhHH
Confidence            334444556666666654322      25999999999999999999999996 55566

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=98.95  E-value=3.7e-11  Score=100.06  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=50.2

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP  149 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~  149 (171)
                      .+++.||+||+++|+|||||||++|.+..+       |++++++++.|+.++++.++.+.+..
T Consensus        80 ~~s~~~a~yfs~vT~tTvGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~~g~v~~~~  135 (301)
T 1xl4_A           80 PGSFTDAFFFSVQTMATIGYGKLIPIGPLA-------NTLVTLEALCGMLGLAVAASLIYARF  135 (301)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhhhheeccCCCCCcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            388999999999999999999999988665       99999999999999999988766544

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=98.95  E-value=7.1e-11  Score=99.61  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIP  149 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~  149 (171)
                      .+++.||+||+++|+|||||||++|.+..+       |++++++++.|+.++++.++.+....
T Consensus        94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~ig~i~~~~  149 (333)
T 1p7b_A           94 PPGFVGAFFFSVETLATVGYGDMHPQTVYA-------HAIATLEIFVGMSGIALSTGLVFARF  149 (333)
T ss_dssp             SSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHhHhhhheeeeecCCCCCcCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            358999999999999999999999998665       99999999999999999998776543

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=98.93  E-value=3.2e-11  Score=92.13  Aligned_cols=52  Identities=23%  Similarity=0.450  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhhhhccccCCCC------CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          12 VITLSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~------w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ++.++++++++++..+...+.+      |++.||+||+++|+|||||||++|. +..|+
T Consensus        38 ~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~-t~~~r   95 (166)
T 3pjs_K           38 ATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV-TLWGR   95 (166)
T ss_dssp             TSSSSTTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCC-SSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCC-CHhHH
Confidence            3344456667777777655432      9999999999999999999999996 55566

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=98.83  E-value=2.8e-10  Score=82.83  Aligned_cols=48  Identities=21%  Similarity=0.399  Sum_probs=35.0

Q ss_pred             HHHHHHhhhhccccCC------CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          16 SILFIFIPAYVFSSIE------PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        16 ~~~~~~~~~~~~~~~~------~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +++.+.+++..++..|      +.|++.||+||+++|+|||||||++|. +..|+
T Consensus        36 ~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~-t~~gr   89 (122)
T 2ih3_C           36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPV-TLWGR   89 (122)
T ss_dssp             HHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred             HHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCC-CccHH
Confidence            3344455555554332      239999999999999999999999996 44555

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.82  E-value=1.5e-10  Score=97.12  Aligned_cols=57  Identities=12%  Similarity=0.209  Sum_probs=51.1

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhH
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPE  150 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~  150 (171)
                      +|++.||+||+++|+|||||||+.|.+..+       |++++++++.|+.++++.++.+.+...
T Consensus        76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g-------r~~~~~~~l~G~~~~a~~~g~i~~~~~  132 (321)
T 2qks_A           76 PAGFGGAFFFSVETLATVGYGDMHPQTVYA-------HWIATLEIFVGMSSIALATGCAFIKMS  132 (321)
T ss_dssp             STTHHHHHHHHHHHHTTCCCCSSCBCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhheeeeeeEEeccccCCCcCcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            579999999999999999999999998766       999999999999999999987775443

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=98.77  E-value=4e-10  Score=99.82  Aligned_cols=57  Identities=25%  Similarity=0.360  Sum_probs=51.0

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHHH
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPELK  152 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~~  152 (171)
                      ++.||+||+++|+|||||||+.|.+..|       |++++++++.|+.++++.++.+.+..+..
T Consensus       375 s~~~a~y~~~vT~TTvGYGDi~P~t~~g-------r~f~~~~~l~G~~~l~l~iavI~~~f~~~  431 (514)
T 2r9r_B          375 SIPDAFWWAVVSMTTVGYGDMVPTTIGG-------KIVGSLCAIAGVLTIALPVPVIVSNFNYF  431 (514)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             chhhhhheeeeEEEecccCCCCCCCcch-------HhhehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999998665       89999999999999999999888755543

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=98.76  E-value=6.9e-10  Score=84.11  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhhhhccccCCC------CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          13 ITLSILFIFIPAYVFSSIEP------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +.++++++++++..++..|.      .+++.||+||+++|+|||||||++|. +..|+
T Consensus        56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~-t~~gr  112 (155)
T 2a9h_A           56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPV-TLWGR  112 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCC-ChhHH
Confidence            33444556667766654322      24899999999999999999999996 55555

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.61  E-value=9e-10  Score=91.66  Aligned_cols=51  Identities=35%  Similarity=0.597  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          12 VITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .+.++++++++++..+... |+|+|.+|+||+++|+|||||||++|. +..|+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~-e~~~~~~a~y~~~~t~tTvGyGd~~p~-t~~~r   73 (336)
T 1lnq_A           23 ILLLVLAVIIYGTAGFHFI-EGESWTVSLYWTFVTIATVGYGDYSPS-TPLGM   73 (336)
T ss_dssp             STTTTTTSHHHHTTTTTTS-SSCCSSTTHHHHHHHHTTCCCSSCCCC-CSSHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHhhcccCCCCCCC-CcCHH
Confidence            3344556778888888754 789999999999999999999999996 55555

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=98.47  E-value=3.1e-08  Score=83.51  Aligned_cols=58  Identities=14%  Similarity=0.273  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhccccCC------CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814           6 SYLGSLVITLSILFIFIPAYVFSSIE------PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ..++.+.+.++++.+++.+.++....      +.++|.+|+||+++|+|||||||++|. ...|+
T Consensus        61 ~~ll~~~~~~~l~~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~-t~~gr  124 (333)
T 1p7b_A           61 PVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQ-TVYAH  124 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCC-CHHHH
Confidence            33444444444444455566654322      257999999999999999999999995 44455

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=98.44  E-value=2.8e-08  Score=78.16  Aligned_cols=47  Identities=28%  Similarity=0.556  Sum_probs=34.3

Q ss_pred             HHHHHhhhhccccCCC------CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          17 ILFIFIPAYVFSSIEP------NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        17 ~~~~~~~~~~~~~~~~------~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ++.+.+++..++..|+      .|++.+|+||+++|+||+||||++|. +..|+
T Consensus       141 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~-t~~~~  193 (223)
T 1orq_C          141 MLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPA-TPIGK  193 (223)
T ss_dssp             HHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCC-CHhHH
Confidence            3344445555544333      28999999999999999999999996 44455

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=98.36  E-value=4.5e-08  Score=81.38  Aligned_cols=32  Identities=31%  Similarity=0.553  Sum_probs=27.5

Q ss_pred             CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +.|++.+|+||+++|+|||||||++|. ...|+
T Consensus        79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~-t~~gr  110 (301)
T 1xl4_A           79 RPGSFTDAFFFSVQTMATIGYGKLIPI-GPLAN  110 (301)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCSSSCCC-HHHHH
T ss_pred             CcCCHHHHHHHhhhheeccCCCCCcCC-CHHHH
Confidence            358999999999999999999999995 44445

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=98.34  E-value=5.1e-08  Score=86.39  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=28.7

Q ss_pred             CCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          31 EPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .+.|+|.+|+||+++|+|||||||++|. +..|+
T Consensus        47 ~~~~~~~~~~y~~~~t~tTvGygd~~p~-~~~~~   79 (565)
T 4gx0_A           47 GRAYSFMAGIYWTITVMTTLGFGDITFE-SDAGY   79 (565)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCCSSCCC-SHHHH
T ss_pred             CCCCchhhhhheeeeeeeeecCCCcCCC-CccHH
Confidence            4569999999999999999999999996 55555

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=98.32  E-value=1e-07  Score=79.95  Aligned_cols=31  Identities=19%  Similarity=0.460  Sum_probs=27.3

Q ss_pred             CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          33 NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        33 ~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .|+|.+|+||+++|+|||||||++|. ...|+
T Consensus        76 ~~s~~~a~y~s~vT~tTVGYGDi~P~-t~~gr  106 (321)
T 2qks_A           76 PAGFGGAFFFSVETLATVGYGDMHPQ-TVYAH  106 (321)
T ss_dssp             STTHHHHHHHHHHHHTTCCCCSSCBC-SHHHH
T ss_pred             CcchhheeeeeeEEeccccCCCcCcc-cHHHH
Confidence            68999999999999999999999995 44445

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=98.23  E-value=1.1e-07  Score=80.21  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=46.6

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA  147 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~  147 (171)
                      ++.|++||+++|+|||||||+.|.++-     |..++++.+.++.|+.+.+...+.+..
T Consensus        91 sf~~af~fSv~T~TTvGYGd~~p~~~~-----~~g~~l~~~~~l~G~~l~a~~~giv~a  144 (340)
T 3sya_A           91 GFVSAFLFSIETETTIGYGYRVITDKC-----PEGIILLLIQSVLGSIVNAFMVGCMFV  144 (340)
T ss_dssp             STTHHHHHHHHHHSCCCCSSSCBCTTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhhhheeeeeecCCCccCcCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999998532     234899999999999999998886654

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.04  E-value=3.3e-07  Score=77.50  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=45.3

Q ss_pred             ccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814          89 SYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA  147 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~  147 (171)
                      ++.|++||+++|+|||||||..|...-     |..++++.+.++.|+.+.+...+.+..
T Consensus        94 sf~~af~fSv~T~TTvGYGd~~p~~~~-----~~~~~l~~~~~l~G~~l~a~~~giv~a  147 (343)
T 3spc_A           94 GFVAAFLFSIETQTTIGYGFRCVTEEC-----PLAVFMVVVQSIVGCIIDSFMIGAIMA  147 (343)
T ss_dssp             SHHHHHHHHHHHHSCCCCSSSEECSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhheeeeeeEeecCCCccCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999999986321     334899999999999999998876553

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=97.89  E-value=1.2e-06  Score=73.20  Aligned_cols=30  Identities=30%  Similarity=0.647  Sum_probs=26.2

Q ss_pred             CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          34 WSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        34 w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .++.+|+||+++|+||+||||+.|. +..|+
T Consensus       160 ~~~~~s~y~~~~t~ttvGygd~~p~-t~~~~  189 (355)
T 3beh_A          160 GSIPQAMWWAVVTLSTTGYGDTIPQ-SFAGR  189 (355)
T ss_dssp             SSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred             ccHHHHHHHHHhheeecCCCCCCCC-ChhHH
Confidence            3899999999999999999999996 44455

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=97.71  E-value=4.1e-06  Score=74.11  Aligned_cols=30  Identities=33%  Similarity=0.629  Sum_probs=26.2

Q ss_pred             CCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          34 WSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        34 w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      .++.+|+||+++|+||+||||+.|. ...|+
T Consensus       374 ~s~~~a~y~~~vT~TTvGYGDi~P~-t~~gr  403 (514)
T 2r9r_B          374 PSIPDAFWWAVVSMTTVGYGDMVPT-TIGGK  403 (514)
T ss_dssp             SSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred             cchhhhhheeeeEEEecccCCCCCC-CcchH
Confidence            4899999999999999999999995 44455

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=97.67  E-value=3.3e-06  Score=68.66  Aligned_cols=60  Identities=10%  Similarity=0.176  Sum_probs=47.7

Q ss_pred             ccccceeEEEEEEeccccc-ccc-cCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHhhHH
Q psy6814          89 SYLDSLYFCFISITTIGLG-DYI-PGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAIPEL  151 (171)
Q Consensus        89 s~~da~Yf~~iT~tTIGfG-D~~-P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~~~~  151 (171)
                      ++.||+|+.++++||+||| |+. |.+..++   ...+.+..+.++.|+.++.+.++.+.+-.++
T Consensus       180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~---~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~  241 (285)
T 3rvy_A          180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYP---YAWVFFIPFIFVVTFVMINLVVAICVDAMAI  241 (285)
T ss_dssp             SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT---TTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC---hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999999 997 8876541   1236788888889999999999988875443

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=97.45  E-value=1.7e-05  Score=66.92  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=22.8

Q ss_pred             CCccCceeeeeeeEeccccCCCCc
Q psy6814          34 WSYLDSLYFCFISITTIGLGDYIP   57 (171)
Q Consensus        34 w~~~~a~yF~~~~lTTiGyGd~~P   57 (171)
                      -+|.+|+||+++|+|||||||+.|
T Consensus        90 ~sf~~af~fSv~T~TTvGYGd~~p  113 (340)
T 3sya_A           90 NGFVSAFLFSIETETTIGYGYRVI  113 (340)
T ss_dssp             CSTTHHHHHHHHHHSCCCCSSSCB
T ss_pred             cCHHHHHhhhheeeeeecCCCccC
Confidence            378999999999999999999999

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=97.37  E-value=4.6e-05  Score=64.32  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=22.2

Q ss_pred             CccCceeeeeeeEeccccCCCCc
Q psy6814          35 SYLDSLYFCFISITTIGLGDYIP   57 (171)
Q Consensus        35 ~~~~a~yF~~~~lTTiGyGd~~P   57 (171)
                      +|.+|+||++.|+|||||||..|
T Consensus        94 sf~~af~fSv~T~TTvGYGd~~p  116 (343)
T 3spc_A           94 GFVAAFLFSIETQTTIGYGFRCV  116 (343)
T ss_dssp             SHHHHHHHHHHHHSCCCCSSSEE
T ss_pred             CHHHHhheeeeeeEeecCCCccC
Confidence            78999999999999999999987

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=96.01  E-value=0.00084  Score=54.27  Aligned_cols=50  Identities=18%  Similarity=0.249  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHhhhhccccCCCC--CCccCceeeeeeeEeccccC-CCC-cc
Q psy6814           9 GSLVITLSILFIFIPAYVFSSIEPN--WSYLDSLYFCFISITTIGLG-DYI-PG   58 (171)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~--w~~~~a~yF~~~~lTTiGyG-d~~-Pg   58 (171)
                      +.++.+++.+|-.+|...|....++  -|+++|++.+++++||.||| |+. |.
T Consensus       152 ~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~  205 (285)
T 3rvy_A          152 IALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPL  205 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            3334444445555566666543333  38889999999999999999 997 73

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	5e-05
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	2e-04

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 10 SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGSLVITL 69
          + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P         +TL
Sbjct: 3  TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTL 61

Query: 70 SILFIFIPAYVFSSI 84
           +L I   A     +
Sbjct: 62 IVLGIGTFAVAVERL 76

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 8/85 (9%)

Query: 64  SLVITLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLY 123
           + ++ L +  I      F  IE   S+  SLY+ F++I T+G GDY P          L 
Sbjct: 3   TRILLLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPS-------TPLG 54

Query: 124 KIIVSVYLILSLLFTMFVLKTFHAI 148
                  ++L +      ++     
Sbjct: 55  MYFTVTLIVLGIGTFAVAVERLLEF 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.62
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.53
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.2
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.17
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.01
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	98.84
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	98.7
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	98.6
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	96.74
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	96.27

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.62  E-value=1.6e-18  Score=116.46  Aligned_cols=73  Identities=25%  Similarity=0.387  Sum_probs=65.2

Q ss_pred             hHHHHHHhhhhhhhcccCCccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814          68 TLSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA  147 (171)
Q Consensus        68 ~llli~i~iga~if~~~e~~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~  147 (171)
                      ..+..++..++..++..| +|++.||+||+++|+|||||||++|.++.+       |++++++++.|+..++..++.+.+
T Consensus         7 ~~~~~~~~~g~~~~~~~e-~~s~~dalyf~~~T~tTiGyGD~~P~t~~~-------r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2           7 LLVLAVIIYGTAGFHFIE-GESWTVSLYWTFVTIATVGYGDYSPSTPLG-------MYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             TTTTTSHHHHTTTTTTSS-SCCSSTTHHHHHHHHTTCCCSSCCCCCSSH-------HHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHhhheeeccCCCCCCCCcch-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566778899999888 899999999999999999999999999876       999999999999999999988776


Q ss_pred             h
Q psy6814         148 I  148 (171)
Q Consensus       148 ~  148 (171)
                      .
T Consensus        79 ~   79 (80)
T d1lnqa2          79 F   79 (80)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.53  E-value=2.8e-16  Score=109.95  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=61.7

Q ss_pred             HHHHHHhhhhhhhcccCCc------cccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHH
Q psy6814          69 LSILFIFIPAYVFSSIEPN------WSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVL  142 (171)
Q Consensus        69 llli~i~iga~if~~~e~~------ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~  142 (171)
                      ++++.++.++..+...|++      .++.||+||+++|+|||||||++|.+..|       |++++++++.|+.+++..+
T Consensus        14 ~~~~~~~~~s~~~~~~e~~~~~~~~~s~~~aly~~~vT~tTvGYGDi~P~t~~g-------r~~~~~~~~~Gi~~~~~~~   86 (103)
T d1r3jc_          14 LLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG-------RCVAVVVMVAGITSFGLVT   86 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCCcccCchhhhhhhheeeecccccCccccCChhH-------HHHHHHHHHHHHHHHHHHH
Confidence            3344455566655555421      46889999999999999999999999877       9999999999999999999


Q ss_pred             HHHHHhhHHH
Q psy6814         143 KTFHAIPELK  152 (171)
Q Consensus       143 ~~i~~~~~~~  152 (171)
                      +.+.+...++
T Consensus        87 ~~i~~~~~~~   96 (103)
T d1r3jc_          87 AALATWFVGR   96 (103)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9888765543

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.20  E-value=6.2e-13  Score=94.30  Aligned_cols=54  Identities=15%  Similarity=0.290  Sum_probs=48.7

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHA  147 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~  147 (171)
                      .+++.||+||+++|+|||||||+.|.+..+       |+++.+.++.|+.+.+..++.+.+
T Consensus        59 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~-------~~~~~~~~~~g~~~~a~~~g~i~~  112 (116)
T d1p7ba2          59 PPGFVGAFFFSVETLATVGYGDMHPQTVYA-------HAIATLEIFVGMSGIALSTGLVFA  112 (116)
T ss_dssp             SSSTHHHHHHHTTTTTTCCCSCCCCCSHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccccccccCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999998665       999999999999999998876654

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.17  E-value=5.3e-13  Score=94.61  Aligned_cols=55  Identities=22%  Similarity=0.316  Sum_probs=49.3

Q ss_pred             ccccccceeEEEEEEecccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHh
Q psy6814          87 NWSYLDSLYFCFISITTIGLGDYIPGESPQQEFKSLYKIIVSVYLILSLLFTMFVLKTFHAI  148 (171)
Q Consensus        87 ~ws~~da~Yf~~iT~tTIGfGD~~P~~~~~~~~~~~~~~~~~~~i~~Gl~~~~~~~~~i~~~  148 (171)
                      .+++.||+||+++|+|||||||++|.+..+       |+++.++++.|+...+..++.+..-
T Consensus        58 ~~~~~~a~yfs~~T~tTvGYGDi~P~t~~~-------r~~~~~~~~~G~~~~a~~~g~i~~~  112 (116)
T d1xl4a2          58 PGSFTDAFFFSVQTMATIGYGKLIPIGPLA-------NTLVTLEALCGMLGLAVAASLIYAR  112 (116)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCSSSCCCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCCCccccCCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999998665       9999999999999999988876543

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.01  E-value=4.4e-12  Score=84.37  Aligned_cols=48  Identities=35%  Similarity=0.555  Sum_probs=40.6

Q ss_pred             HHHHHHHhhhhccccCCCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          15 LSILFIFIPAYVFSSIEPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +++.++.+++..++. .|+||+.||+||+++|+|||||||++|. +..||
T Consensus         8 ~~~~~~~~g~~~~~~-~e~~s~~dalyf~~~T~tTiGyGD~~P~-t~~~r   55 (80)
T d1lnqa2           8 LVLAVIIYGTAGFHF-IEGESWTVSLYWTFVTIATVGYGDYSPS-TPLGM   55 (80)
T ss_dssp             TTTTSHHHHTTTTTT-SSSCCSSTTHHHHHHHHTTCCCSSCCCC-CSSHH
T ss_pred             HHHHHHHHHHHHHHH-HhCCCHHHHHHHHhhheeeccCCCCCCC-CcchH
Confidence            345677888888886 4789999999999999999999999996 55555

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.84  E-value=1.3e-10  Score=80.52  Aligned_cols=31  Identities=29%  Similarity=0.535  Sum_probs=27.2

Q ss_pred             CCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          33 NWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        33 ~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ..++.||+||+++|+||+||||++|. +..||
T Consensus        38 ~~s~~~aly~~~vT~tTvGYGDi~P~-t~~gr   68 (103)
T d1r3jc_          38 LITYPRALWWSVETATTVGYGDLYPV-TLWGR   68 (103)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCSSSCCC-SHHHH
T ss_pred             cCchhhhhhhheeeecccccCccccC-ChhHH
Confidence            35889999999999999999999996 55566

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=98.70  E-value=1.3e-09  Score=76.63  Aligned_cols=33  Identities=18%  Similarity=0.502  Sum_probs=28.4

Q ss_pred             CCCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          31 EPNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        31 ~~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      ++.|+|.||+||+.+|+|||||||++|. ...|+
T Consensus        57 ~~~~~~~~a~yfs~~T~tTvGYGDi~P~-t~~~~   89 (116)
T d1p7ba2          57 QSPPGFVGAFFFSVETLATVGYGDMHPQ-TVYAH   89 (116)
T ss_dssp             SSSSSTHHHHHHHTTTTTTCCCSCCCCC-SHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccccccccC-CcHHH
Confidence            3578999999999999999999999996 44455

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=98.60  E-value=2.2e-09  Score=75.44  Aligned_cols=32  Identities=31%  Similarity=0.553  Sum_probs=27.4

Q ss_pred             CCCCccCceeeeeeeEeccccCCCCccccccch
Q psy6814          32 PNWSYLDSLYFCFISITTIGLGDYIPGLSYLGS   64 (171)
Q Consensus        32 ~~w~~~~a~yF~~~~lTTiGyGd~~Pgl~~~g~   64 (171)
                      +.++|.||+||+++|+|||||||++|. ...|+
T Consensus        57 ~~~~~~~a~yfs~~T~tTvGYGDi~P~-t~~~r   88 (116)
T d1xl4a2          57 RPGSFTDAFFFSVQTMATIGYGKLIPI-GPLAN   88 (116)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCSSSCCC-HHHHH
T ss_pred             CCCCHHHHHHHHHHHHccCCCCccccC-CcHHH
Confidence            567999999999999999999999995 44444

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.74  E-value=1.2e-05  Score=49.29  Aligned_cols=36  Identities=19%  Similarity=0.441  Sum_probs=24.1

Q ss_pred             HHHHhhhhhhhcccCC-----cc-ccccceeEEEEEEecccc
Q psy6814          71 ILFIFIPAYVFSSIEP-----NW-SYLDSLYFCFISITTIGL  106 (171)
Q Consensus        71 li~i~iga~if~~~e~-----~w-s~~da~Yf~~iT~tTIGf  106 (171)
                      ++.+.+++......|+     +. +..||+||+++|+|||||
T Consensus        16 ~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          16 VIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeecccC
Confidence            3334444444444453     22 567999999999999998

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.27  E-value=0.00012  Score=44.61  Aligned_cols=19  Identities=26%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             CCccCceeeeeeeEecccc
Q psy6814          34 WSYLDSLYFCFISITTIGL   52 (171)
Q Consensus        34 w~~~~a~yF~~~~lTTiGy   52 (171)
                      =+.+||++++++|+|||||
T Consensus        39 ~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1          39 ITYPRALWWACETATTVGY   57 (57)
T ss_dssp             CSHHHHHHHHHHHHTTCCC
T ss_pred             cccchhhhhheeeeecccC
Confidence            3889999999999999998