Psyllid ID: psy6851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------95
Protein Sequence
MTIQALKMRNQLSKQQPNLQFQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLHGLLVCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ
Secondary Structure (PSIPRED)
cccccEEEEEcccccccccccccccccccEEEcccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccEEEcccHHHHHHHcHHcHHHHHHHHHHHHHcccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccEEEEcccccEEEEEEEEEEccccccccEEEEcccccccHHHHHHHHHccccHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHcccccccccccHHcccccHHHHHHHHcHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEcccEEEEEEccccccccEEccccccccccccccHHHHcccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHccHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEHHHHccccccccccccccccccccccccHHHHHHccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccccHHHHHHHHHccccccHcccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEcccEEEEEEcccccccccccccccccHHHHHcccccccccEEEccccccccccccccccccEEEEEcccccccccccccccccccHHHHEEEEEEccEccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHcccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccHHHHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccEEEEcccEEEEEEEcccHHcccccccccccccHHHHHHcHHccccccccHHHHcccccHHHHHHHHHHHcccEEEEEEEccccccHHHccccccccHHHHcccccHHHHHHccccccEEEccHHHHHHHHcccEEEEEEEEEcccHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHcccEEEEcccEEEEEcccccccccccccHHHHHcccEEEccccccccHHHHHHHccccccccccccccccccccEEEHHHHHHHHccccEEEccccccccccccHHHHHHHHHHcccccEEEEEEcccccEEEEcccccccccccHHEHHHHHHHccHHEHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTIQALKMRNQlskqqpnlQFQHLNQLlprrlnpalklpflplpsigrpsavklvdKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEaqkkippsemfkmetdkysqfdetvlpptvltrvSEYIPEIVASYIEKIIANGlayesngsvyfnvnafdsqpnhyyaklvpeaygdtktlqegevrgyppwpariegladetpnrlKYHIFFYGtretgicrqdelfpytefkdkygKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIrnlkfpattvssfekWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIylrgtpnqllLRDIGAYVTKILTVFGcigdvknigfplggtgvestnleelvlpYLTILSEFRDNIRTEARLIKSTEILNQCDRlrdevlpnvgvrlediegksyiTFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESkmklvtdpdkLTMMKNILSNVQEAKqdisaqpegtinniknVTFQKLLTAVrdpfsdwldslhgssitdnsifatlpkhweAEFHKDMADLNKLLTAVRDPlsdwldslhgssitdnsifatlpkhweaefhkdmadlnvlpptvltrvSEYIPEivasaqtpkpaaakkaesssdddsssedekpavkapakpvahaaepaaakkaesssdddsssedekpavktpakpvaqaakpaaakkaesssdddsssedekpavkapakpvaqaakpgdlssqeasekrspndfalwkkskagepwwsspwgegrpgwhiECSVMAsavlgpqldihtggvdlkfphhdnelaqaeglpthdqeGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLHGLLVcfcfqglpthdqeGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ
Flexible Loop (DISEMBL)
mtiqalkmrnqlskqqpnLQFQHLNQLLPRRLNPALKLPflplpsigrpsavklvDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQeakeaqkkippsemfKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYlrgtpnqllLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKsteilnqcdrlrdevlpnvgvrlediegksyitfDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEkhvqeneiqtskiLKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDisaqpegtinniKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVasaqtpkpaaakkaesssdddsssedekpavkapakpvahaaepaaakkaesssdddsssedekpavktpakpvaqaakpaaakkaesssdddsssedekpavkapakpvaqaakpgdlssqeasekrspNDFALWkkskagepwwsspWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLHGLLVCFCFQGLPTHDQEGKELSKGLAKKLkklqltqekkyneyiasvq
Low Complexity Region (SEG)
MTIQALKMRNQLSKQQPNLQFQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLakekeakrlaeaekaaekerkkaelaaaqeakeaqkkIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVasaqtpkpaaakkaesssdddsssedekpavkapakpvahaaepaaakkaesssdddsssedekpavktpakpvaqaakpaaakkaesssdddsssedekpavkapakpvaqaakpGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEgkelskglakklkklqltqekkYNEYIASVQKATLHGLLVCFCFQGLPTHDQEgkelskglakklkklqltqekkYNEYIASVQ
Disordered region (IsUnstruct)
***********************LNQLLPRRLNPALKLPFLPLP*********************************************************************FDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTD***LTMM*NI*****************TINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV*************************************************************************************************************************************ALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP**********************************LTQEKKYNEYIASVQKATLHGLLVCFCFQGLP************************************
Disordered Region (DISOPRED)
*TIQALKMRNQLSKQQPNLQFQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE*****************PWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFP*********WTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIG*************EELVLPYLTILSEFRDNIRTEAR*******LNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN******VQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLP*********DMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE*****************************KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKK**LTQEKKYNEYIASVQKATLHGLLVCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ
Disordered Region (DISEMBL)
MTIQALKMRNQLSKQQPNLQFQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKE*******************************KIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASA********************************************************************************************************************************DFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLHGLLVCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ
Disordered Region (DISPRO)
MTIQALKMRNQLSKQQPNLQFQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLHGLLVCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIQALKMRNQLSKQQPNLQFQHLNQLLPRRLNPALKLPFLPLPSIGRPSAVKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRVHLSQKQQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQKATLHGLLVCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	948	2.2.26 [Sep-21-2011]
Q9ER72	831	Cysteine--tRNA ligase, cy	no	N/A	0.336	0.383	0.349	3e-55
Q7ZWR2	747	Cysteine--tRNA ligase, cy	N/A	N/A	0.336	0.427	0.347	4e-55
Q5M7N8	747	Cysteine--tRNA ligase, cy	yes	N/A	0.334	0.424	0.344	2e-54
Q7KN90	741	Cysteine--tRNA ligase, cy	yes	N/A	0.330	0.422	0.344	2e-52
Q291L4	741	Cysteine--tRNA ligase, cy	yes	N/A	0.332	0.425	0.341	4e-50
Q5F408	748	Cysteine--tRNA ligase, cy	yes	N/A	0.193	0.244	0.452	6e-44
Q4R550	748	Cysteine--tRNA ligase, cy	N/A	N/A	0.195	0.247	0.405	2e-41
P49589	748	Cysteine--tRNA ligase, cy	no	N/A	0.195	0.247	0.397	2e-40
P53852	767	Cysteine--tRNA ligase OS=	yes	N/A	0.100	0.123	0.583	5e-31
Q54KR1	660	Cysteine--tRNA ligase, cy	yes	N/A	0.094	0.136	0.681	1e-30

>sp|Q9ER72|SYCC_MOUSE Cysteine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Cars PE=1 SV=2

 Score =  217 bits (553), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 151/432 (34%), Positives = 203/432 (46%), Gaps = 113/432 (26%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+L +YF Y++ Y MNITDIDDKII+RARQNYLFE++ +E +   +++L
Sbjct: 151 ARSYISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQY-REQKPPATQLL 209

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKL 551
           KD+ + M  F  K+   TDPDK  M++ I ++V+ A + +      +++  + +   Q L
Sbjct: 210 KDVRDAMKPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVRSSLSGEEVDSKVQVL 269

Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
           L   +D  SDWLDS  GS +TDNSIF+ LPK WE EFHKDM  LN               
Sbjct: 270 LEEAKDLLSDWLDSTGGSEVTDNSIFSKLPKFWEEEFHKDMEALN--------------- 314

Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAA 671
                                           VLPP VLTRVSEY+PEIV   Q      
Sbjct: 315 --------------------------------VLPPDVLTRVSEYVPEIVNFVQKIVDNG 342

Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTP 731
              A + S                       A+ AA++K                   + 
Sbjct: 343 YGYASNGS------------------VYFDTAKFAASEK------------------HSY 366

Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK-PVAQAAKPGDLSSQEASEKRS 790
            K V +A      K  +    D S S D     ++P    + +A+KPG+           
Sbjct: 367 GKLVPEAV--GDQKALQEGEGDLSISADRLSEKRSPNDFALWKASKPGE----------- 413

Query: 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDN 850
           P+    W K   G P W           HIECS MA  +LG  +DIH GG DL+FPHHDN
Sbjct: 414 PSWPCPWGK---GRPGW-----------HIECSAMAGTLLGASMDIHGGGFDLRFPHHDN 459

Query: 851 ELAQAEGLPTHD 862
           ELAQ+E    +D
Sbjct: 460 ELAQSEAYFEND 471

Mus musculus (taxid: 10090)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6

>sp|Q7ZWR2|SYCC_XENLA Cysteine--tRNA ligase, cytoplasmic OS=Xenopus laevis GN=cars PE=2 SV=1

 Score =  217 bits (552), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 202/434 (46%), Gaps = 115/434 (26%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+L +YF Y++ Y MNITDIDDKIIKRARQ +LF+++ + N    S +L
Sbjct: 67  ARSYISFDILRRVLRDYFKYDVFYCMNITDIDDKIIKRARQRHLFQQYRESNPPH-SDLL 125

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA---KQDISAQPEGTINNIKNVTFQ 549
           +D+   +  F  ++    DPDK  M++ I + V  A    QD   +  G     K+   Q
Sbjct: 126 QDVNTALIPFLQRISETNDPDKKQMLERIQTAVSAALLPLQDALNKNTGAEELQKHS--Q 183

Query: 550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
            L+ A  D  SDWLD  HG+ I DNSIF+ LPK+WE E+HKDM  LN             
Sbjct: 184 VLMEAAVDLLSDWLDEKHGAQIADNSIFSQLPKYWEGEYHKDMEALN------------- 230

Query: 610 LDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKP 669
                                             VL P VLTRVSEY+PEIVA  Q    
Sbjct: 231 ----------------------------------VLTPDVLTRVSEYVPEIVAFVQKIVD 256

Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
                  + S   S+++         AK V    E    +KA    + D S         
Sbjct: 257 NGYGYVSNGSVYFSTAKFHDSENHFYAKLV---PEAVGDQKALQEGEGDLS--------- 304

Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789
                       +A + +E  S +D +              + +A+KPG+ S        
Sbjct: 305 -----------ISADRLSEKQSPNDFA--------------LWKASKPGEPS-------- 331

Query: 790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHD 849
                  W+      PW     G+GRPGWHIECS MA ++LG  +DIH GG DL+FPHHD
Sbjct: 332 -------WES-----PW-----GKGRPGWHIECSAMAGSILGESMDIHGGGFDLRFPHHD 374

Query: 850 NELAQAEGLPTHDQ 863
           NELAQ+E    +D 
Sbjct: 375 NELAQSEAYFDNDH 388

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q5M7N8|SYCC_XENTR Cysteine--tRNA ligase, cytoplasmic OS=Xenopus tropicalis GN=cars PE=2 SV=1

 Score =  214 bits (546), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 205/436 (47%), Gaps = 119/436 (27%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+L +YF Y++ Y MNITDIDDKIIKRARQ +LF+++ + N  + S +L
Sbjct: 67  ARSYISFDILRRVLRDYFKYDVFYCMNITDIDDKIIKRARQRHLFQQYRERNP-RPSDLL 125

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA---KQDISAQPEGTINNIKNVTFQ 549
           +D+   +  F  ++    DPDK  M++ I  +V  A    QD +         ++ ++ Q
Sbjct: 126 QDVSAALTPFLQRISEANDPDKRQMLERIHGSVSAALLPLQD-AVSSNARAEELERLS-Q 183

Query: 550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
           +L+ A  D  SDWLD  HG+ ITDNSIF+ LPKHWE+E+H+DM  LN             
Sbjct: 184 ELMEAAVDLLSDWLDEKHGAQITDNSIFSQLPKHWESEYHRDMEALN------------- 230

Query: 610 LDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKP 669
                                             VLPP VLTRVSEY+PEIVA  Q    
Sbjct: 231 ----------------------------------VLPPDVLTRVSEYVPEIVAFVQRIVD 256

Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA--ESSSDDDSSSEDEKPA 727
                  + S   S+++              HA+E     K   E+  D  +  E E   
Sbjct: 257 NGYGYVSNGSVYFSTAK-------------FHASEKHYYAKLVPEAVGDQKALQEGE--- 300

Query: 728 VKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
                               + S   D  SE + P   A    + +A+KPG+ S +    
Sbjct: 301 -------------------GDLSISADRLSEKQSPNDFA----LWKASKPGEPSWE---- 333

Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
             SP     W K + G              WHIECS MA ++LG  +DIH GG DL+FPH
Sbjct: 334 --SP-----WGKGRPG--------------WHIECSAMAGSILGESMDIHGGGFDLRFPH 372

Query: 848 HDNELAQAEGLPTHDQ 863
           HDNELAQ+E    +D 
Sbjct: 373 HDNELAQSEAYFDNDH 388

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q7KN90|SYCC_DROME Cysteine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-cys PE=1 SV=1

 Score =  208 bits (529), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/429 (34%), Positives = 202/429 (47%), Gaps = 116/429 (27%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQE-NEIQTSKI 491
            +SYI+FDILRRILS+YF YNI Y MNITDIDDKII+RARQN+LF+++  E  ++   ++
Sbjct: 59  ARSYISFDILRRILSDYFGYNIHYVMNITDIDDKIIRRARQNHLFDEYAAEAQKLPLDEL 118

Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDIS-AQPEGTINNIKNVTFQK 550
           L    EV+  F+      TDPDK  M+   L  + +A + ++ A  +G   + + ++ ++
Sbjct: 119 LGQQKEVLQRFQDTCAKNTDPDKKIMLDKTLQRMNDAVEALTKAVGKG---DEREISEKR 175

Query: 551 L--LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSD 608
           L  L   +DP SDWLDSL G+ I DN++F  LP++WE +FH DM  LN            
Sbjct: 176 LLYLNEAKDPISDWLDSLKGAQINDNAVFEALPRYWEDQFHNDMKSLN------------ 223

Query: 609 WLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPK 668
                                              +LPP VLTRVSEY+P+IV   Q   
Sbjct: 224 -----------------------------------ILPPDVLTRVSEYVPQIVTFIQ--- 245

Query: 669 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
                                   K     +A+AA  +         D +   + EK   
Sbjct: 246 ------------------------KIIDNGLAYAANNSV------YFDVNGFDKREKHHY 275

Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEK 788
              AK V +A      K  +    D S +ED           +++     D +  +AS+ 
Sbjct: 276 ---AKLVPEAY--GDTKSLQEGEGDLSIAEDR----------LSEKRSANDFALWKASKA 320

Query: 789 RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHH 848
             P   + W K   G P W           HIECS MAS + GP  DIHTGGVDLKFPHH
Sbjct: 321 GEPWWDSPWGK---GRPGW-----------HIECSAMASDIFGPTFDIHTGGVDLKFPHH 366

Query: 849 DNELAQAEG 857
           DNELAQ+E 
Sbjct: 367 DNELAQSEA 375

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q291L4|SYCC_DROPS Cysteine--tRNA ligase, cytoplasmic OS=Drosophila pseudoobscura pseudoobscura GN=Aats-cys PE=3 SV=1

 Score =  200 bits (509), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 146/427 (34%), Positives = 194/427 (45%), Gaps = 112/427 (26%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQEN-EIQTSKI 491
            +SYI+FDILRRIL++YF YNI Y MNITDIDDKIIKRARQN+LFE++  E+  +   ++
Sbjct: 59  ARSYISFDILRRILADYFGYNIHYVMNITDIDDKIIKRARQNHLFEEYAGESANLPLDQL 118

Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDI-SAQPEGTINNIKNVTFQK 550
           L    EV+  F+      TDPDK  M+   L  + +A   + +A  +G    I     Q 
Sbjct: 119 LGHQKEVLVRFQETCAKNTDPDKKVMLDKTLQRMNDAVVALTTAVSQGDEKGIAEKR-QH 177

Query: 551 LLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWL 610
            L   +DP ++WLD   G+ I DN++F +LP+ WE +FH DM  LN              
Sbjct: 178 YLNEAKDPIAEWLDGKKGAEINDNAVFESLPRFWEDQFHNDMKSLN-------------- 223

Query: 611 DSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPA 670
                                            +LPP VLTRVSEY+P+IVA  Q     
Sbjct: 224 ---------------------------------ILPPDVLTRVSEYVPQIVAFIQ----- 245

Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
                                 K     +A+A        A +S   D +  D K     
Sbjct: 246 ----------------------KIIDNGLAYA--------ANNSVYFDVNGFDRKEK-HH 274

Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790
            AK V +A      K  +    D S +ED           +++     D +  +AS+   
Sbjct: 275 YAKLVPEAY--GDTKSLQEGEGDLSVAEDR----------LSEKRSANDFALWKASKAGE 322

Query: 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDN 850
           P   + W +   G P W           HIECS MAS + G   DIHTGGVDLKFPHHDN
Sbjct: 323 PWWDSPWGR---GRPGW-----------HIECSAMASDIFGSTFDIHTGGVDLKFPHHDN 368

Query: 851 ELAQAEG 857
           ELAQ+E 
Sbjct: 369 ELAQSEA 375

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q5F408|SYCC_CHICK Cysteine--tRNA ligase, cytoplasmic OS=Gallus gallus GN=CARS PE=2 SV=1

 Score =  180 bits (456), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/230 (45%), Positives = 132/230 (57%), Gaps = 47/230 (20%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRRIL +YF +++ Y MNITDIDDKIIKR RQNYLFE++ ++N+   +++L
Sbjct: 68  ARSYISFDILRRILRDYFKFDVFYCMNITDIDDKIIKRTRQNYLFEQY-RKNKSTPAQLL 126

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL 552
           +D+      F  K+   TDPDK  M++ I + V+ A                   F  L 
Sbjct: 127 EDVKTASELFSVKLSETTDPDKRQMLEKIQNAVKSA-------------------FDPLQ 167

Query: 553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDS 612
            AV+                     A LP    +  H+       LL   +D LSDWLDS
Sbjct: 168 EAVQ---------------------AKLPAEEISRCHE------ILLEEAKDLLSDWLDS 200

Query: 613 LHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
             GS +TDNSIF+ LPK WE EFHKDM  LNVLPP VLTRVSEY+PEIVA
Sbjct: 201 KFGSQVTDNSIFSELPKFWEGEFHKDMEALNVLPPDVLTRVSEYVPEIVA 250

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q4R550|SYCC_MACFA Cysteine--tRNA ligase, cytoplasmic OS=Macaca fascicularis GN=CARS PE=2 SV=1

 Score =  171 bits (434), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/234 (40%), Positives = 127/234 (54%), Gaps = 49/234 (20%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+L +YF +++ Y MNITDIDDKIIKRARQN+LFE+++ E   + +++L
Sbjct: 68  ARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQYL-EKRPEAAQLL 126

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKL 551
           +D+   +  F  K+   TDPDK  M++ I   VQ A + +    +  +   + N   + L
Sbjct: 127 EDVQAALKPFSVKLNETTDPDKKQMLERIQHEVQLATEPLEKAVQSRLTGEEVNSCVEVL 186

Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
           L   +D  SDWLDS  GS +TDNSIF+ LPK WE EFH+DM  LN               
Sbjct: 187 LEEAKDLLSDWLDSTLGSDVTDNSIFSKLPKFWEGEFHRDMEALN--------------- 231

Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ 665
                                           VLPP VLTRVSEY+PEIV   Q
Sbjct: 232 --------------------------------VLPPDVLTRVSEYVPEIVNFVQ 253

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P49589|SYCC_HUMAN Cysteine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=CARS PE=1 SV=3

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 126/234 (53%), Gaps = 49/234 (20%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+L +YF +++ Y MNITDIDDKIIKRARQN+LFE++ +E   + +++L
Sbjct: 68  ARSYISFDILRRVLKDYFKFDVFYCMNITDIDDKIIKRARQNHLFEQY-REKRPEAAQLL 126

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKL 551
           +D+   +  F  K+   TDPDK  M++ I   VQ A + +    +  +   + N   + L
Sbjct: 127 EDVQAALKPFSVKLNETTDPDKKQMLERIQHAVQLATEPLEKAVQSRLTGEEVNSCVEVL 186

Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
           L   +D  SDWLDS  G  +TDNSIF+ LPK WE +FH+DM  LN               
Sbjct: 187 LEEAKDLLSDWLDSTLGCDVTDNSIFSKLPKFWEGDFHRDMEALN--------------- 231

Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ 665
                                           VLPP VLTRVSEY+PEIV   Q
Sbjct: 232 --------------------------------VLPPDVLTRVSEYVPEIVNFVQ 253

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|P53852|SYC_YEAST Cysteine--tRNA ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL247W PE=1 SV=1

 Score =  137 bits (344), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 63/108 (58%), Positives = 76/108 (70%), Gaps = 13/108 (12%)

Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
           G LS+   + K+S NDFALWK SKAGEP W SPWG+GRPGWHIECSVMAS +LG  +DIH
Sbjct: 325 GSLSNFADNGKKSNNDFALWKASKAGEPEWESPWGKGRPGWHIECSVMASDILGSNIDIH 384

Query: 838 TGGVDLKFPHHDNELAQAEGLPTHDQ-------------EGKELSKGL 872
           +GG+DL FPHHDNELAQ+E    + Q             EG+++SK L
Sbjct: 385 SGGIDLAFPHHDNELAQSEARFDNQQWINYFLHTGHLHIEGQKMSKSL 432

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|Q54KR1|SYCC_DICDI Cysteine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=cysS PE=3 SV=1

 Score =  136 bits (342), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 1/91 (1%)

Query: 774 AAKPGDLSSQEA-SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGP 832
           A   G L++  A SEKRS  DFALWKKSK GEP W+SPWGEGRPGWHIECS MAS +LG 
Sbjct: 207 AEGEGSLTATSAVSEKRSGFDFALWKKSKPGEPVWNSPWGEGRPGWHIECSAMASDLLGG 266

Query: 833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHDQ 863
            +DIH+GG DLKFPHHDNELAQ+E    + Q
Sbjct: 267 NIDIHSGGSDLKFPHHDNELAQSEAFYGNRQ 297

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	948
312374234	744	hypothetical protein AND_16292 [Anophele	0.332	0.423	0.400	8e-73
321453850	676	hypothetical protein DAPPUDRAFT_265305 [	0.333	0.467	0.391	2e-71
195382430	741	GJ21863 [Drosophila virilis] gi|19414473	0.333	0.426	0.361	2e-65
383855612	733	PREDICTED: cysteine--tRNA ligase, cytopl	0.329	0.425	0.377	3e-65
156547291	735	PREDICTED: cysteinyl-tRNA synthetase, cy	0.328	0.423	0.363	3e-65
321478384	730	hypothetical protein DAPPUDRAFT_303176 [	0.333	0.432	0.370	9e-64
157105607	735	cysteinyl-tRNA synthetase [Aedes aegypti	0.331	0.427	0.370	4e-63
17509797	908	Protein CARS-1, isoform b [Caenorhabditi	0.364	0.381	0.339	8e-62
17509795	909	Protein CARS-1, isoform a [Caenorhabditi	0.364	0.380	0.339	8e-62
308505978	770	CRE-CARS-1 protein [Caenorhabditis reman	0.364	0.449	0.334	2e-61

>gi|312374234|gb|EFR21828.1| hypothetical protein AND_16292 [Anopheles darlingi]

 Score =  282 bits (721), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 171/427 (40%), Positives = 216/427 (50%), Gaps = 112/427 (26%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENE-IQTSKI 491
            +SYI+FDILRR+LS+YF YN+ Y MNITDIDDKIIKRARQN+L+E++++E + +   ++
Sbjct: 59  ARSYISFDILRRVLSDYFGYNVLYVMNITDIDDKIIKRARQNHLYEQYLEEAKAVPLERL 118

Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDIS-AQPEGTINNIKNVTFQK 550
           L D  EVM AF   +   TD DK  MM  +L  +  A  ++S A   G    + N   ++
Sbjct: 119 LDDSQEVMAAFRENVARTTDTDKRAMMDRMLERLTVAVDNLSLAVGSGKAEQV-NQAKEQ 177

Query: 551 LLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWL 610
           LL   +DP S+ LDS  GSS+T+N+IF TLP++WE EFHKDM  LN              
Sbjct: 178 LLHDSKDPLSELLDSKRGSSVTENAIFETLPRYWEDEFHKDMRALN-------------- 223

Query: 611 DSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPA 670
                                            VLP  VLTRVSEY+PEIV         
Sbjct: 224 ---------------------------------VLPADVLTRVSEYVPEIVTY------- 243

Query: 671 AAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKT 730
                                       +    E   A +A  S   D +  D +P    
Sbjct: 244 ----------------------------IERIIERGLAYEANGSVYFDVARFDGRPE-HH 274

Query: 731 PAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS 790
            AK V +A     A++ +    D S+ ED     ++P                       
Sbjct: 275 YAKLVPEAY--GDARQLQEGEGDLSTGEDRLGEKRSP----------------------- 309

Query: 791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDN 850
            NDFALWK SKAGEPWW SPWG+GRPGWHIECS MASA+ G  LDIHTGGVDLKFPHHDN
Sbjct: 310 -NDFALWKASKAGEPWWDSPWGKGRPGWHIECSAMASAICGDYLDIHTGGVDLKFPHHDN 368

Query: 851 ELAQAEG 857
           ELAQ+E 
Sbjct: 369 ELAQSEA 375

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321453850|gb|EFX65049.1| hypothetical protein DAPPUDRAFT_265305 [Daphnia pulex]

 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 171/437 (39%), Positives = 222/437 (50%), Gaps = 121/437 (27%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQE-NEIQTSKI 491
            +SY++FDILRR+L +YF Y+ITY MNITDIDDKIIKRARQNYL+EK+  E +E++T  +
Sbjct: 53  ARSYMSFDILRRVLRDYFGYDITYVMNITDIDDKIIKRARQNYLYEKYAAESSELET--L 110

Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA----KQDISAQPEGTINNIKNVT 547
            KD+ E +G    +M + TDPDK  M + +L+ V  A     +  S   +G  ++ K+  
Sbjct: 111 RKDVEESVGRLAKQMAVTTDPDKKVMQETMLAKVTAAINKSAEITSKAADGLCHDAKSF- 169

Query: 548 FQKLLTAVRDPFSDWLDSL-HGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPL 606
              L+   +D  SDWLDS+ HG  ++DN+IFA+LP++WE EF+KDMA LN          
Sbjct: 170 ---LMAEAKDVLSDWLDSIKHGMDVSDNAIFASLPRYWEEEFYKDMAALN---------- 216

Query: 607 SDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQT 666
                                                VLP  V+TRVS+Y+PEIV     
Sbjct: 217 -------------------------------------VLPADVITRVSQYVPEIV----- 234

Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
                                           +A   E   A  A  S   D +  D + 
Sbjct: 235 ------------------------------DYIAKIMERGFAYSANGSVYFDVAKFDSQK 264

Query: 727 AVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEAS 786
             K  AK V +A     +K  +    D S SED     K+P                   
Sbjct: 265 NHKY-AKLVPEAY--GDSKALQEGEGDLSVSEDRLSEKKSP------------------- 302

Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
                NDFALWK SK+GEP W SPWG+GRPGWHIECSVMASA+LG  +D HTGGVDLKFP
Sbjct: 303 -----NDFALWKNSKSGEPSWDSPWGKGRPGWHIECSVMASAILGSSMDFHTGGVDLKFP 357

Query: 847 HHDNELAQAEGLPTHDQ 863
           HHDNELAQ+E    +D+
Sbjct: 358 HHDNELAQSEAYYDNDE 374

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195382430|ref|XP_002049933.1| GJ21863 [Drosophila virilis] gi|194144730|gb|EDW61126.1| GJ21863 [Drosophila virilis]

 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/426 (36%), Positives = 207/426 (48%), Gaps = 110/426 (25%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENE-IQTSKI 491
            +SYI+FDILRRIL+ YF YNI Y MNITDIDDKIIKRARQ +L+E++    E +   ++
Sbjct: 59  ARSYISFDILRRILANYFGYNIHYVMNITDIDDKIIKRARQYHLYEQYASGAEQLPLEQL 118

Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL 551
           L +  EV+   + K    TDPDK  M++ +L  + +A                    + L
Sbjct: 119 LNEQKEVLNQLQVKCDKNTDPDKKVMLEKMLQRMIDA-------------------LEAL 159

Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
             AV    +D +              A +  H+ AE               +DP+++WLD
Sbjct: 160 TQAVSSGNADEI--------------AKMRCHYLAE--------------AKDPIAEWLD 191

Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAA 671
              G+ + DN++F  LP++WE  FH DM  LN+LPP VLTRVSEY+P+IVA  Q      
Sbjct: 192 GKKGAHVNDNTVFEALPRYWEDHFHNDMKSLNILPPDVLTRVSEYVPQIVAFIQ------ 245

Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTP 731
                                           +   A +A  S   D +  D++      
Sbjct: 246 -----------------------------RIIDNGLAYEANGSVYFDVNGFDKRE----- 271

Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
                   K   AK    +  D +S ++ +  +   A  +++   P D +          
Sbjct: 272 --------KHHYAKLVPEAYGDTTSLQEGEGDLSVTADRLSEKRSPNDFA---------- 313

Query: 792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNE 851
               LWK SKAGEPWW SPWG GRPGWHIECS MAS + G   DIHTGGVDLKFPHHDNE
Sbjct: 314 ----LWKASKAGEPWWDSPWGHGRPGWHIECSAMASDIFGSIFDIHTGGVDLKFPHHDNE 369

Query: 852 LAQAEG 857
           LAQ+E 
Sbjct: 370 LAQSEA 375

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855612|ref|XP_003703304.1| PREDICTED: cysteine--tRNA ligase, cytoplasmic-like isoform 1 [Megachile rotundata]

 Score =  257 bits (656), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 161/426 (37%), Positives = 214/426 (50%), Gaps = 114/426 (26%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+LS+YF YN+ Y MNITDIDDKIIKRARQNYL+EK+++EN     +IL
Sbjct: 59  ARSYISFDILRRVLSDYFGYNVLYVMNITDIDDKIIKRARQNYLYEKYIEENH-ALDEIL 117

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDI-SAQPEGTINNIKNVTFQKL 551
            D   VM  FE  +K   D DK  M++ +L +V++A +++ +A      N IK    + L
Sbjct: 118 DDAKNVMCTFEDTVKTTNDVDKKCMLQKMLHDVEKAIENLENAVKLKDENKIKEYQ-ELL 176

Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
           L   RDP ++WLD   G+++T++SIF  L ++WEAEFHKDM  LN               
Sbjct: 177 LKEARDPLAEWLDKNKGATVTEHSIFTKLSQNWEAEFHKDMDSLN--------------- 221

Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAA 671
                                           VL P VLTRVSEYIPEI+A         
Sbjct: 222 --------------------------------VLKPNVLTRVSEYIPEIIAF-------- 241

Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTP 731
                                      V    E   A ++  S   D ++ D++      
Sbjct: 242 ---------------------------VKKIIENGVAYESNGSVYFDVAAFDKQDK-HYY 273

Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
           AK V +A               D+SS +E   V +  +  ++   P D +  ++S++  P
Sbjct: 274 AKLVPEAY-------------GDTSSLEEGEGVLSTHES-SEKRSPTDFALWKSSKEGEP 319

Query: 792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNE 851
                         WW SPWG+GRPGWHIECSVMAS + G  LDIHTGGVDLKFPHHDNE
Sbjct: 320 --------------WWDSPWGKGRPGWHIECSVMASIICGESLDIHTGGVDLKFPHHDNE 365

Query: 852 LAQAEG 857
           +AQAE 
Sbjct: 366 IAQAEA 371

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547291|ref|XP_001606432.1| PREDICTED: cysteinyl-tRNA synthetase, cytoplasmic-like [Nasonia vitripennis]

 Score =  256 bits (655), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/429 (36%), Positives = 210/429 (48%), Gaps = 118/429 (27%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+LS+YFN+++ Y MNITDIDDKIIKRARQN+L+E ++ EN     +IL
Sbjct: 59  ARSYISFDILRRVLSDYFNFDVVYVMNITDIDDKIIKRARQNHLYENYLAENH-SLDQIL 117

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQD----ISAQPEGTINNIKNVTF 548
            D   VM  FE+ +K  TDPDK TM + +L  V+E+ +     + +  +  I   ++V  
Sbjct: 118 SDAKSVMQTFENTVKTTTDPDKRTMYERMLIRVKESIEKLEVAVKSNNQAQIKECQDV-- 175

Query: 549 QKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSD 608
             LL   +DP SDWLD   G ++T++SIF+ L +HWE +FHKDM  L             
Sbjct: 176 --LLKESKDPLSDWLDKKKGDTVTEHSIFSKLSQHWENDFHKDMDAL------------- 220

Query: 609 WLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPK 668
                                             NV  P VLTRVSEY+PEIVA  +   
Sbjct: 221 ----------------------------------NVWRPNVLTRVSEYVPEIVAFIE--- 243

Query: 669 PAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAV 728
                                   K  A  +A+                     +   +V
Sbjct: 244 ------------------------KIIANGLAY---------------------ESNGSV 258

Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEK 788
               K   ++ K   AK    +  D SS ++ +  +   A  +++     D +  ++S+ 
Sbjct: 259 YFDVKAFDKSEKHYYAKLVPEAYGDTSSLQEGEGDLSVSADRLSEKRSVTDFALWKSSKA 318

Query: 789 RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHH 848
             P              WW SPWG+GRPGWHIECSVMASA+ G  LDIHTGGVDLKFPHH
Sbjct: 319 GEP--------------WWDSPWGKGRPGWHIECSVMASAICGESLDIHTGGVDLKFPHH 364

Query: 849 DNELAQAEG 857
           DNELAQAE 
Sbjct: 365 DNELAQAEA 373

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478384|gb|EFX89341.1| hypothetical protein DAPPUDRAFT_303176 [Daphnia pulex]

 Score =  251 bits (642), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 161/434 (37%), Positives = 215/434 (49%), Gaps = 118/434 (27%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKH-VQENEIQTSKI 491
            +SY++FDILRR+L +YF Y+ITY MNITDIDDKIIKRARQNYL+EK+  Q +E++T  +
Sbjct: 52  ARSYMSFDILRRVLRDYFGYDITYVMNITDIDDKIIKRARQNYLYEKYAAQMSELET--L 109

Query: 492 LKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA--KQDISAQPEGTINNIKNVTFQ 549
             D+ E +     +M   TDPDK  M + +L+ V  A  K   + + +  ++ +K+    
Sbjct: 110 QTDVKESVDRLTKQMAGTTDPDKKVMQEKMLAKVTAAIDKFTETIKLDQGLSEVKSF--- 166

Query: 550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
            LL   +D  SDWLDS HG  ++DN+IFA+LP+HWE EF+KDMA LN             
Sbjct: 167 -LLAEAKDVLSDWLDSKHGMDVSDNAIFASLPRHWEEEFYKDMAALN------------- 212

Query: 610 LDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKP 669
                                             VLP  V+TRVSEY+PEIV        
Sbjct: 213 ----------------------------------VLPADVITRVSEYVPEIV-------- 230

Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
                                        ++   E   A  A  S   + S  D +   K
Sbjct: 231 ---------------------------DYISRIIERGLAYSANGSVYFNVSKFDSQKNHK 263

Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789
             AK V +A     +K  +    D S SED           +++   P D +  + S+  
Sbjct: 264 Y-AKLVPEAY--GDSKALQEGEGDLSVSEDR----------LSEKKSPNDFALWKTSKSG 310

Query: 790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHD 849
            P+              W SPWG+GRPGWHIECSVMASA+LG  +DIHTGGVDLKFPHHD
Sbjct: 311 EPS--------------WDSPWGKGRPGWHIECSVMASAILGSSMDIHTGGVDLKFPHHD 356

Query: 850 NELAQAEGLPTHDQ 863
           NELAQ+E    +D+
Sbjct: 357 NELAQSEAYYDNDE 370

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157105607|ref|XP_001648945.1| cysteinyl-tRNA synthetase [Aedes aegypti] gi|108880067|gb|EAT44292.1| AAEL004345-PA [Aedes aegypti]

 Score =  249 bits (637), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 158/426 (37%), Positives = 205/426 (48%), Gaps = 112/426 (26%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKIL 492
            +SYI+FDILRR+L++YF YN+ Y MNITDIDDKIIKRARQNYL+E++V E       +L
Sbjct: 60  ARSYISFDILRRVLTDYFGYNVLYVMNITDIDDKIIKRARQNYLYERYV-ERTTSLETLL 118

Query: 493 KDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDIS-AQPEGTINNIKNVTFQKL 551
            D  EVM AF+  +   TDPDK  MM+ +L  +  A  +++ A   G    +K     + 
Sbjct: 119 DDNKEVMEAFQGNLSKTTDPDKKAMMERMLEKLTAAVDNLTIAVKTGEEGKVKEAQ-SRF 177

Query: 552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLD 611
           L   +DP SD LD   G+S+ +NSIF TLP++WE EFHKDM  LN               
Sbjct: 178 LEDSKDPLSDLLDKKEGASVNENSIFETLPRYWEDEFHKDMNALN--------------- 222

Query: 612 SLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAA 671
                                           VL P VLTRVSEY+P+IV   Q      
Sbjct: 223 --------------------------------VLAPDVLTRVSEYVPQIVEYIQK----- 245

Query: 672 AKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTP 731
                                           +   A +A  S   D +  D++      
Sbjct: 246 ------------------------------IIDNGLAYEANGSVYFDVAGFDKREK-HYY 274

Query: 732 AKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP 791
           AK V +A     AK  +    D S++ED           +++   P D +  + S+   P
Sbjct: 275 AKLVPEAY--GDAKSLQEGEGDLSTTEDR----------LSEKRSPNDFALWKNSKAGEP 322

Query: 792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNE 851
                         WW+SPWG+GRPGWHIECS MAS + G  LDIHTGGVDLKFPHHDNE
Sbjct: 323 --------------WWNSPWGKGRPGWHIECSAMASDICGDYLDIHTGGVDLKFPHHDNE 368

Query: 852 LAQAEG 857
           LAQ+E 
Sbjct: 369 LAQSEA 374

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17509797|ref|NP_491014.1| Protein CARS-1, isoform b [Caenorhabditis elegans] gi|351062878|emb|CCD70916.1| Protein CARS-1, isoform b [Caenorhabditis elegans]

 Score =  245 bits (626), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 214/463 (46%), Gaps = 117/463 (25%)

Query: 409 ILNQCDRLRDEVLPNVGVRLEDI-------------EGKSYITFDILRRILSEYFNYNIT 455
           + N   R ++  +PN G R+                  +SY++ DILRR+  +YF Y++ 
Sbjct: 185 VYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVE 244

Query: 456 YAMNITDIDDKIIKRARQNYLFEKHVQENEIQ-TSKILKDIGEVMGAFESKMKLVTDPDK 514
           + MNITD+DDKIIKRARQ++L + +  E++     K+ +D+   +  F++K +   DPDK
Sbjct: 245 FIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCEDVVAALEHFKTKFETEMDPDK 304

Query: 515 LTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDN 574
             M + +   +++ +Q  SA  E                                    +
Sbjct: 305 KKMFEVM---IKKVQQQSSALEEAMK-------------------------------AQD 330

Query: 575 SIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAE 634
           SI     K              +LL   RD LS+WLD  HG  + D+S+F  L K +E E
Sbjct: 331 SIATEEAK-------------GRLLNESRDVLSEWLDHNHGKDVRDHSVFDDLAKTYEKE 377

Query: 635 FHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA 694
           F  DMA LNVLP  VLTRVSEY+PE++   +                           K 
Sbjct: 378 FLADMARLNVLPVDVLTRVSEYVPEVITYVK---------------------------KI 410

Query: 695 PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
            +   A+AAE            D S   D K   + P    A+    A  + +E    + 
Sbjct: 411 ISNGYAYAAE------------DGSVYFDTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNM 458

Query: 755 SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEG 814
             SE E                   +S      KRSPNDFALWK SK GEP+W S WG G
Sbjct: 459 KESEGEL-----------------SMSDDRLKSKRSPNDFALWKSSKDGEPFWPSEWGNG 501

Query: 815 RPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEG 857
           RPGWHIECSVM+SA+ G +LDIH GG DLKFPHHDNE+AQ E 
Sbjct: 502 RPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEA 544

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|17509795|ref|NP_491013.1| Protein CARS-1, isoform a [Caenorhabditis elegans] gi|351062877|emb|CCD70915.1| Protein CARS-1, isoform a [Caenorhabditis elegans]

 Score =  245 bits (626), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 214/463 (46%), Gaps = 117/463 (25%)

Query: 409 ILNQCDRLRDEVLPNVGVRLEDI-------------EGKSYITFDILRRILSEYFNYNIT 455
           + N   R ++  +PN G R+                  +SY++ DILRR+  +YF Y++ 
Sbjct: 186 VYNSLTRQKEVFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVE 245

Query: 456 YAMNITDIDDKIIKRARQNYLFEKHVQENEIQ-TSKILKDIGEVMGAFESKMKLVTDPDK 514
           + MNITD+DDKIIKRARQ++L + +  E++     K+ +D+   +  F++K +   DPDK
Sbjct: 246 FIMNITDVDDKIIKRARQSHLLKSYFNESQAPPVMKVCEDVVAALEHFKTKFETEMDPDK 305

Query: 515 LTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDN 574
             M + +   +++ +Q  SA  E                                    +
Sbjct: 306 KKMFEVM---IKKVQQQSSALEEAMK-------------------------------AQD 331

Query: 575 SIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAE 634
           SI     K              +LL   RD LS+WLD  HG  + D+S+F  L K +E E
Sbjct: 332 SIATEEAK-------------GRLLNESRDVLSEWLDHNHGKDVRDHSVFDDLAKTYEKE 378

Query: 635 FHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA 694
           F  DMA LNVLP  VLTRVSEY+PE++   +                           K 
Sbjct: 379 FLADMARLNVLPVDVLTRVSEYVPEVITYVK---------------------------KI 411

Query: 695 PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
            +   A+AAE            D S   D K   + P    A+    A  + +E    + 
Sbjct: 412 ISNGYAYAAE------------DGSVYFDTKAFEQNPKHFYAKLVPEAYGEDSEQLLKNM 459

Query: 755 SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEG 814
             SE E                   +S      KRSPNDFALWK SK GEP+W S WG G
Sbjct: 460 KESEGEL-----------------SMSDDRLKSKRSPNDFALWKSSKDGEPFWPSEWGNG 502

Query: 815 RPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEG 857
           RPGWHIECSVM+SA+ G +LDIH GG DLKFPHHDNE+AQ E 
Sbjct: 503 RPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEA 545

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|308505978|ref|XP_003115172.1| CRE-CARS-1 protein [Caenorhabditis remanei] gi|308259354|gb|EFP03307.1| CRE-CARS-1 protein [Caenorhabditis remanei]

 Score =  244 bits (622), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 155/463 (33%), Positives = 212/463 (45%), Gaps = 117/463 (25%)

Query: 409 ILNQCDRLRDEVLPNVGVRLEDI-------------EGKSYITFDILRRILSEYFNYNIT 455
           + N   R ++  +PN G R+                  +SY++ DILRR+  +YF Y++ 
Sbjct: 32  VYNSLTRQKEIFVPNEGKRVRWYICGPTVYDSSHMGHARSYLSLDILRRVFRDYFGYDVE 91

Query: 456 YAMNITDIDDKIIKRARQNYLFEKHVQENEI-QTSKILKDIGEVMGAFESKMKLVTDPDK 514
           + MNITD+DDKIIKRARQ++L + +  E++     K+ +D+   +  F+ K     DPDK
Sbjct: 92  FIMNITDVDDKIIKRARQSHLLKSYFNESQAPSVIKVCEDVLAALEHFDKKFVNEVDPDK 151

Query: 515 LTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDN 574
             M++ ++  VQ+                       L TA++   S  ++   G      
Sbjct: 152 KKMLEVMIKKVQDQSN-------------------ALETAMKAQDSIAIEEAKG------ 186

Query: 575 SIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAE 634
                                 +LL   RD LS+WLD  HG  + D+S+F  L K +E E
Sbjct: 187 ----------------------RLLNESRDVLSEWLDHNHGKDVRDHSVFDDLAKTYEKE 224

Query: 635 FHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA 694
           F  DMA LNVLP  VLTRVSEY+PE++   +                           K 
Sbjct: 225 FLADMARLNVLPVDVLTRVSEYVPEVITYVK---------------------------KI 257

Query: 695 PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
                A+AAE  +                    V    K   Q  K   AK    +  DD
Sbjct: 258 INNGYAYAAEDGS--------------------VYFDTKAFEQNPKHFYAKLVPEAYGDD 297

Query: 755 SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEG 814
           S             K + +      +S +    KR+P DFALWK SK GEP+WSS WG G
Sbjct: 298 SEQ---------LLKNMREGEGELSMSDERLKSKRNPTDFALWKSSKDGEPFWSSEWGNG 348

Query: 815 RPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEG 857
           RPGWHIECSVM+SA+ G +LDIH GG DLKFPHHDNE+AQ E 
Sbjct: 349 RPGWHIECSVMSSAICGSKLDIHAGGFDLKFPHHDNEIAQVEA 391

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	948
FB|FBgn0027091	741	Aats-cys "Cysteinyl-tRNA synth	0.183	0.234	0.469	1.9e-60
RGD|1310747	748	Cars "cysteinyl-tRNA synthetas	0.194	0.245	0.469	1.6e-68
UNIPROTKB|D4A452	831	Cars "Cysteinyl-tRNA synthetas	0.194	0.221	0.469	5.3e-68
MGI|MGI:1351477	831	Cars "cysteinyl-tRNA synthetas	0.197	0.225	0.455	7.7e-67
UNIPROTKB|A4FUC8	832	CARS "CARS protein" [Bos tauru	0.197	0.224	0.450	6.8e-66
UNIPROTKB|F1RYA3	829	CARS "Uncharacterized protein"	0.188	0.215	0.453	7.1e-66
UNIPROTKB|Q4R550	748	CARS "Cysteine--tRNA ligase, c	0.188	0.239	0.439	1.5e-54
UNIPROTKB|F1PU34	831	CARS "Uncharacterized protein"	0.197	0.225	0.445	7.9e-65
UNIPROTKB|Q291L4	741	Aats-cys "Cysteine--tRNA ligas	0.185	0.237	0.461	1.9e-59
UNIPROTKB|A8MVQ3	738	CARS "Cysteinyl-tRNA synthetas	0.188	0.242	0.439	1.3e-54

FB|FBgn0027091 Aats-cys "Cysteinyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 1.9e-60, Sum P(3) = 1.9e-60
 Identities = 86/183 (46%), Positives = 120/183 (65%)

Query:   260 MKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSAL 319
             + EFFLNVKD  R++         F+ WT+ +  L  +F   +  VHA+LCDN+DTRSAL
Sbjct:   451 LNEFFLNVKDLTRHV-LSEEPRRQFDAWTEVEAALQKKFSNAQVQVHASLCDNIDTRSAL 509

Query:   320 DSIRDCISQVNIYLRGTP---NQLLLRDIGAYVTKILTVFGCI-GDVKNIGFPL-GGTGV 374
             D+IR+ +S  N+Y+R      N LLLR++  Y+T +L VFG I G    IGFP+ GG+G 
Sbjct:   510 DAIRELVSVSNVYIRDNKTRLNSLLLRNVATYITDLLHVFGAISGPRGGIGFPVSGGSGA 569

Query:   375 EST--NLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432
             ++   +LE  VLPY+  L+EFR  +R +A+ +K+ +IL  CD LRD VLPN+GVRLED +
Sbjct:   570 QAAGADLETTVLPYVQSLAEFRYLVREQAKTLKAFDILKLCDDLRDNVLPNLGVRLEDKD 629

Query:   433 -GK 434
              GK
Sbjct:   630 IGK 632

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISS;IBA;NAS

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IBA;NAS

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IBA

RGD|1310747 Cars "cysteinyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 427 (155.4 bits), Expect = 1.6e-68, Sum P(3) = 1.6e-68
 Identities = 91/194 (46%), Positives = 126/194 (64%)

Query:   434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
             +SYI+FDILRR+L +YF Y++ Y MNITDIDDKII+RARQNYLFE++ +E +   +++LK
Sbjct:    69 RSYISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQY-REQKPSAAQLLK 127

Query:   494 DIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA----KQDISAQPEGTINNIKNVTFQ 549
             D+G+ M  F  K+   TDPDK  M++ I ++V+ A    +Q + + P G    + +   Q
Sbjct:   128 DVGDAMKPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVHSNPSG--EEVDS-RVQ 184

Query:   550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
              LL   +D  SDWLDS  GS +TDNSIF+ LPK WE EFHKDM  LN L   V   +S++
Sbjct:   185 VLLEEAKDLLSDWLDSTGGSEVTDNSIFSKLPKFWEEEFHKDMEALNVLPPDVLTRVSEY 244

Query:   610 LDSLHG--SSITDN 621
             +  +      I DN
Sbjct:   245 VPEIVNFVQKIVDN 258

GO:0000049 "tRNA binding" evidence=IEA;ISO

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISO;IBA

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IBA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=ISO;IBA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

UNIPROTKB|D4A452 Cars "Cysteinyl-tRNA synthetase (Predicted), isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 427 (155.4 bits), Expect = 5.3e-68, Sum P(3) = 5.3e-68
 Identities = 91/194 (46%), Positives = 126/194 (64%)

Query:   434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
             +SYI+FDILRR+L +YF Y++ Y MNITDIDDKII+RARQNYLFE++ +E +   +++LK
Sbjct:   152 RSYISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQY-REQKPSAAQLLK 210

Query:   494 DIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEA----KQDISAQPEGTINNIKNVTFQ 549
             D+G+ M  F  K+   TDPDK  M++ I ++V+ A    +Q + + P G    + +   Q
Sbjct:   211 DVGDAMKPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVHSNPSG--EEVDS-RVQ 267

Query:   550 KLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDW 609
              LL   +D  SDWLDS  GS +TDNSIF+ LPK WE EFHKDM  LN L   V   +S++
Sbjct:   268 VLLEEAKDLLSDWLDSTGGSEVTDNSIFSKLPKFWEEEFHKDMEALNVLPPDVLTRVSEY 327

Query:   610 LDSLHG--SSITDN 621
             +  +      I DN
Sbjct:   328 VPEIVNFVQKIVDN 341

GO:0004817 "cysteine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IEA

MGI|MGI:1351477 Cars "cysteinyl-tRNA synthetase" [Mus musculus (taxid:10090)]

 Score = 420 (152.9 bits), Expect = 7.7e-67, Sum P(3) = 7.7e-67
 Identities = 87/191 (45%), Positives = 124/191 (64%)

Query:   434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
             +SYI+FDILRR+L +YF Y++ Y MNITDIDDKII+RARQNYLFE++ +E +   +++LK
Sbjct:   152 RSYISFDILRRVLRDYFQYDVFYCMNITDIDDKIIRRARQNYLFEQY-REQKPPATQLLK 210

Query:   494 DIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIK-NVTFQKLL 552
             D+ + M  F  K+   TDPDK  M++ I ++V+ A + +      +++  + +   Q LL
Sbjct:   211 DVRDAMKPFSVKLSETTDPDKRQMLERIQNSVKLATEPLEQAVRSSLSGEEVDSKVQVLL 270

Query:   553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDS 612
                +D  SDWLDS  GS +TDNSIF+ LPK WE EFHKDM  LN L   V   +S+++  
Sbjct:   271 EEAKDLLSDWLDSTGGSEVTDNSIFSKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPE 330

Query:   613 LHG--SSITDN 621
             +      I DN
Sbjct:   331 IVNFVQKIVDN 341

GO:0000049 "tRNA binding" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISO;IBA

GO:0005524 "ATP binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IBA

GO:0006412 "translation" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=ISO;IBA

GO:0016874 "ligase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A4FUC8 CARS "CARS protein" [Bos taurus (taxid:9913)]

 Score = 420 (152.9 bits), Expect = 6.8e-66, Sum P(3) = 6.8e-66
 Identities = 86/191 (45%), Positives = 123/191 (64%)

Query:   434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
             +SYI+FDILRR+L +YF +++ Y MNITDIDDKIIKRARQN+L E++ +E + Q +++L+
Sbjct:   153 RSYISFDILRRVLRDYFKFDVFYCMNITDIDDKIIKRARQNFLLERY-RETQPQAAQLLE 211

Query:   494 DIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDIS-AQPEGTINNIKNVTFQKLL 552
             D+   +  F +K++   DPDK  M++ +   V +A + +  A   G      +   Q LL
Sbjct:   212 DVRAALQPFSAKLQETVDPDKKQMLERLQHAVAQAAEPLEGALRAGQAGQELDGRVQALL 271

Query:   553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDS 612
                +D  SDWLDS+HGS +TDNSIF+ LPK WEAEFHKDM  LN L   V   +S+++  
Sbjct:   272 EEAKDVLSDWLDSMHGSEVTDNSIFSELPKFWEAEFHKDMEALNVLPPDVLTRVSEYVPE 331

Query:   613 LHG--SSITDN 621
             +      I DN
Sbjct:   332 IVDFVQKIVDN 342

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|F1RYA3 CARS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 418 (152.2 bits), Expect = 7.1e-66, Sum P(3) = 7.1e-66
 Identities = 82/181 (45%), Positives = 119/181 (65%)

Query:   434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
             +SY++FDILRR+L +YF +++ Y MNITD+DDKII+RARQNYLFE++ +E +   +++L+
Sbjct:   151 RSYVSFDILRRVLRDYFRFDVFYCMNITDVDDKIIRRARQNYLFERY-REKQPSAAQLLE 209

Query:   494 DIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDIS-AQPEGTINNIKNVTFQKLL 552
             D+   +  F +K+K  TDPDK  M++ +   V  A + +  A     +    +   Q LL
Sbjct:   210 DVHAALQPFAAKLKETTDPDKKQMLERLERAVTRAAEPLEEAVRASLVGEELDGRVQVLL 269

Query:   553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDS 612
                +D  SDWLDS HGS +TDNSIF+ LPK WEAEFHKDM  LN L   V   +S+++  
Sbjct:   270 AEAKDLLSDWLDSTHGSEVTDNSIFSQLPKFWEAEFHKDMEALNVLPPDVLTRVSEYVPE 329

Query:   613 L 613
             +
Sbjct:   330 I 330

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004817 "cysteine-tRNA ligase activity" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q4R550 CARS "Cysteine--tRNA ligase, cytoplasmic" [Macaca fascicularis (taxid:9541)]

 Score = 408 (148.7 bits), Expect = 1.5e-54, Sum P(3) = 1.5e-54
 Identities = 83/189 (43%), Positives = 118/189 (62%)

Query:   251 QQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 310
             + +L+    + EFFLNVKD +R    P      FEKW + + EL+  F   K  +H ALC
Sbjct:   450 ESALQYEKFLNEFFLNVKDILRA---PVDITGQFEKWGEEEAELNKNFYDKKTAIHEALC 506

Query:   311 DNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKN 364
             DN+DTR+ ++ +R  +SQ N+Y+      R  PN+ LL +I  Y+T +L +FG I +  +
Sbjct:   507 DNVDTRTVMEEMRALVSQCNLYMAARKAMRKRPNRALLENIALYLTHMLKIFGAIEEESS 566

Query:   365 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 424
             +GFP+GG+G  S NLE  V+PYL +LSEFR+ +R  AR  K  E+L   D LRD++LP +
Sbjct:   567 LGFPVGGSGT-SLNLESTVMPYLQVLSEFREGVRKIAREQKVPEVLQLSDALRDDILPEL 625

Query:   425 GVRLEDIEG 433
             GVR ED EG
Sbjct:   626 GVRFEDPEG 634

GO:0000049 "tRNA binding" evidence=ISS

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|F1PU34 CARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 412 (150.1 bits), Expect = 7.9e-65, Sum P(3) = 7.9e-65
 Identities = 85/191 (44%), Positives = 122/191 (63%)

Query:   434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILK 493
             +SYI+FDILRR+L +YF Y++ Y MNITD+DDKIIKRARQNYLFE++ +E + + +++L+
Sbjct:   152 RSYISFDILRRVLRDYFGYDVFYCMNITDVDDKIIKRARQNYLFEEY-REKQPRAAQLLE 210

Query:   494 DIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTIN-NIKNVTFQKLL 552
             D+   +  F  K++  TDPDK  M++ I   VQ A + +    +  +   + +   + LL
Sbjct:   211 DVHAALKLFSVKLQETTDPDKKHMLERIQHTVQLAAEPLERAVQNDLPAEVADSCAEVLL 270

Query:   553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDS 612
                +D  SDWLDS  GS +TDNSIF+ LPK WE EFHKDM  LN L   V   +S+++  
Sbjct:   271 EEAKDLLSDWLDSTLGSEVTDNSIFSKLPKFWEEEFHKDMEALNVLPPDVLTRVSEYVPE 330

Query:   613 LHG--SSITDN 621
             +      I DN
Sbjct:   331 IVNFVQKIVDN 341

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004817 "cysteine-tRNA ligase activity" evidence=IEA

UNIPROTKB|Q291L4 Aats-cys "Cysteine--tRNA ligase, cytoplasmic" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 404 (147.3 bits), Expect = 1.9e-59, Sum P(3) = 1.9e-59
 Identities = 85/184 (46%), Positives = 120/184 (65%)

Query:   260 MKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSAL 319
             + EFFLNVKD  R++         F+ WT  +  L  +F  ++  VHAALCDN+DTRSAL
Sbjct:   451 LNEFFLNVKDLTRHV-LSEEPRRQFDAWTDVEAALQKKFSSSQVQVHAALCDNVDTRSAL 509

Query:   320 DSIRDCISQVNIYLRGTP---NQLLLRDIGAYVTKILTVFGCI-GDVKNIGFPL-GGTGV 374
             D+IR+ +S  N+Y+R      N LLLR++  Y+T +L VFG I G    IGFP+ GG G 
Sbjct:   510 DAIRELVSASNVYIRDNKSRLNSLLLRNVATYITDLLHVFGAIAGPRGGIGFPVSGGAGP 569

Query:   375 EST--NLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE 432
             ++   +LE  VLPY+  L+EFR+ +R +A+ +K+ +IL  CD LRD +LPN+GVRLED +
Sbjct:   570 QAAGGDLETTVLPYVQTLAEFRNLVREQAKALKAFDILKLCDDLRDNILPNLGVRLEDKD 629

Query:   433 GKSY 436
             G  +
Sbjct:   630 GGKF 633

GO:0000049 "tRNA binding" evidence=ISS

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|A8MVQ3 CARS "Cysteinyl-tRNA synthetase, isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 401 (146.2 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
 Identities = 83/189 (43%), Positives = 116/189 (61%)

Query:   251 QQSLKLVVIMKEFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALC 310
             + +L+    + EFFLNVKD +R    P      FEKW + + EL+  F   K  +H ALC
Sbjct:   440 ESALQYEKFLNEFFLNVKDILRA---PVDITGQFEKWGEEEAELNKNFYDKKTAIHKALC 496

Query:   311 DNMDTRSALDSIRDCISQVNIYL------RGTPNQLLLRDIGAYVTKILTVFGCIGDVKN 364
             DN+DTR+ ++ +R  +SQ N+Y+      R  PNQ LL +I  Y+T +L +FG + +  +
Sbjct:   497 DNVDTRTVMEEMRALVSQCNLYMAARKAVRKRPNQALLENIALYLTHMLKIFGAVEEDSS 556

Query:   365 IGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV 424
             +GFP+GG G  S +LE  V+PYL +LSEFR+ +R  AR  K  EIL   D LRD +LP +
Sbjct:   557 LGFPVGGPGT-SLSLEATVMPYLQVLSEFREGVRKIAREQKVPEILQLSDALRDNILPEL 615

Query:   425 GVRLEDIEG 433
             GVR ED EG
Sbjct:   616 GVRFEDHEG 624

GO:0004817 "cysteine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.16	LOW CONFIDENCE prediction!
3rd Layer	6.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	948
PRK00260	463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	5e-45
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	2e-44
COG0215	464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	4e-43
pfam01406	301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	1e-39
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	3e-37
TIGR00435	464	TIGR00435, cysS, cysteinyl-tRNA synthetase	4e-35
PLN02946	557	PLN02946, PLN02946, cysteine-tRNA ligase	2e-30
PRK14535	699	PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi	1e-26
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	1e-23
PRK12418	384	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro	5e-23
cd00672	213	cd00672, CysRS_core, catalytic core domain of cyst	7e-23
PRK14536	490	PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi	7e-21
TIGR03447	411	TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi	9e-21
cd05834	83	cd05834, HDGF_related, The PWWP domain is an essen	2e-18
cd00672	213	cd00672, CysRS_core, catalytic core domain of cyst	8e-18
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	3e-17
pfam01406	301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	2e-15
COG0215	464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	8e-15
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	9e-15
PRK00260	463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	1e-14
TIGR00435	464	TIGR00435, cysS, cysteinyl-tRNA synthetase	1e-14
PRK14534	481	PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi	1e-13
PRK00260	463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	3e-13
pfam01406	301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	4e-12
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	5e-12
COG0215	464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	5e-12
TIGR00435	464	TIGR00435, cysS, cysteinyl-tRNA synthetase	1e-11
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	2e-09
pfam00855	74	pfam00855, PWWP, PWWP domain	3e-09
pfam01406	301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	2e-08
COG0215	464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	4e-08
cd05162	87	cd05162, PWWP, The PWWP domain, named for a conser	1e-07
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	3e-07
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	5e-07
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	7e-07
PRK00260	463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	8e-07
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	9e-07
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	9e-07
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-06
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	1e-06
COG0215	464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	2e-06
cd00672	213	cd00672, CysRS_core, catalytic core domain of cyst	2e-06
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	2e-06
PLN02946	557	PLN02946, PLN02946, cysteine-tRNA ligase	5e-06
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	5e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
PLN02946	557	PLN02946, PLN02946, cysteine-tRNA ligase	1e-05
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	1e-05
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	1e-05
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	1e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-05
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	4e-05
pfam03546	519	pfam03546, Treacle, Treacher Collins syndrome prot	4e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-05
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	1e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14900	1052	PRK14900, valS, valyl-tRNA synthetase; Provisional	2e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	3e-04
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	3e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	3e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	3e-04
PTZ00399	651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	4e-04
TIGR00435	464	TIGR00435, cysS, cysteinyl-tRNA synthetase	4e-04
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	4e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-04
cd05836	86	cd05836, N_Pac_NP60, The PWWP domain is an essenti	4e-04
smart00293	63	smart00293, PWWP, domain with conserved PWWP motif	4e-04
PRK13808	333	PRK13808, PRK13808, adenylate kinase; Provisional	5e-04
PRK12373	400	PRK12373, PRK12373, NADH dehydrogenase subunit E;	5e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	5e-04
PLN02946	557	PLN02946, PLN02946, cysteine-tRNA ligase	6e-04
PRK14536	490	PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi	6e-04
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-04
pfam03546	519	pfam03546, Treacle, Treacher Collins syndrome prot	7e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-04
COG3064	387	COG3064, TolA, Membrane protein involved in colici	7e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	8e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	8e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	0.001
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	0.001
PRK12727	559	PRK12727, PRK12727, flagellar biosynthesis regulat	0.001
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK00260	463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	0.002
PRK14535	699	PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi	0.002
PRK07735	430	PRK07735, PRK07735, NADH dehydrogenase subunit C;	0.002
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	0.002
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.002
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	0.002
pfam05793	528	pfam05793, TFIIF_alpha, Transcription initiation f	0.002
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.003
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.003
PRK12799	421	PRK12799, motB, flagellar motor protein MotB; Revi	0.003
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004

>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated

 Score =  169 bits (430), Expect = 5e-45
 Identities = 49/75 (65%), Positives = 56/75 (74%)

Query: 784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDL 843
            A EKR P DFALWK +K GEP W SPWG+GRPGWHIECS M++  LG   DIH GG DL
Sbjct: 171 VAEEKRDPLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADL 230

Query: 844 KFPHHDNELAQAEGL 858
            FPHH+NE+AQ+E  
Sbjct: 231 IFPHHENEIAQSEAA 245

Length = 463

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score =  171 bits (435), Expect = 2e-44
 Identities = 59/86 (68%), Positives = 66/86 (76%), Gaps = 1/86 (1%)

Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIH 837
           G L    + EKRSPNDFALWK SK GEP W SPWG+GRPGWHIECS MAS +LG  +DIH
Sbjct: 214 GALGKV-SGEKRSPNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIH 272

Query: 838 TGGVDLKFPHHDNELAQAEGLPTHDQ 863
           +GG+DLKFPHHDNELAQ+E      Q
Sbjct: 273 SGGIDLKFPHHDNELAQSEAYFDKHQ 298

Length = 651

>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score =  163 bits (415), Expect = 4e-43
 Identities = 47/76 (61%), Positives = 56/76 (73%)

Query: 783 QEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVD 842
           +   EKR+P DF LWK +K GEP W SPWG+GRPGWHIECS M++  LG   DIH GG D
Sbjct: 171 EVDEEKRNPLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSD 230

Query: 843 LKFPHHDNELAQAEGL 858
           L FPHH+NE+AQ+E  
Sbjct: 231 LIFPHHENEIAQSEAA 246

Length = 464

>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain

 Score =  149 bits (377), Expect = 1e-39
 Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 2/77 (2%)

Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
           KR P DFALWK SK GEP W SPWG+GRPGWHIECS MA   LG Q+DIH GGVDLKFPH
Sbjct: 162 KRDPLDFALWKASKEGEPSWDSPWGKGRPGWHIECSAMARKYLGSQIDIHGGGVDLKFPH 221

Query: 848 HDNELAQAEGLPTHDQE 864
           H+NE+AQ+E     DQ+
Sbjct: 222 HENEIAQSEAA--FDQQ 236

This family includes only cysteinyl tRNA synthetases. Length = 301

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score =  149 bits (378), Expect = 3e-37
 Identities = 70/186 (37%), Positives = 96/186 (51%), Gaps = 21/186 (11%)

Query: 262 EFFLNVKDHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDS 321
            FF NVK  +R        ++S +KWTQ D EL+  F +TK+ VHAAL DN DT  AL +
Sbjct: 370 NFFANVKIKLRES-----ELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEALQA 424

Query: 322 IRDCISQVNIYLRG--TPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNL 379
           ++  IS  N YL     P+  LLR +  YVTKIL++FG +     +G           + 
Sbjct: 425 LQKLISATNTYLNSGEQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQ------GQNST 478

Query: 380 EELVLPYLTILSEFRDNIRTEARLI--------KSTEILNQCDRLRDEVLPNVGVRLEDI 431
            E   P L  L  FRD +R  A+          K  ++L  CD+LRDE LPN+G+R+ED 
Sbjct: 479 SENFKPLLEALLRFRDEVRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDK 538

Query: 432 EGKSYI 437
                +
Sbjct: 539 PDGPSV 544

Length = 651

>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase

 Score =  139 bits (353), Expect = 4e-35
 Identities = 48/77 (62%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
           KR+  DF LWK SK GEP W SPWG+GRPGWHIECS M    LG Q+DIH GGVDL FPH
Sbjct: 174 KRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPH 233

Query: 848 HDNELAQAEGLPTHDQE 864
           H+NE+AQ+E      ++
Sbjct: 234 HENEIAQSEAA--FGKQ 248

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464

>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase

 Score =  126 bits (319), Expect = 2e-30
 Identities = 47/70 (67%), Positives = 57/70 (81%)

Query: 786 SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF 845
           S K++P DFALWK +K GEP+W SPWG GRPGWHIECS M++A LG   DIH GG+DL F
Sbjct: 230 SRKKNPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVF 289

Query: 846 PHHDNELAQA 855
           PHH+NE+AQ+
Sbjct: 290 PHHENEIAQS 299

Length = 557

>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional

 Score =  116 bits (292), Expect = 1e-26
 Identities = 51/87 (58%), Positives = 59/87 (67%), Gaps = 4/87 (4%)

Query: 779 DLSSQEASE----KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQL 834
           DL + E  E    KR P DF LWK +KAGEP W SPWG GRPGWHIECS M+  + G   
Sbjct: 388 DLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTF 447

Query: 835 DIHTGGVDLKFPHHDNELAQAEGLPTH 861
           DIH GG DL+FPHH+NE+AQ+ G   H
Sbjct: 448 DIHGGGADLQFPHHENEIAQSVGATGH 474

Length = 699

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score =  107 bits (268), Expect = 1e-23
 Identities = 43/71 (60%), Positives = 51/71 (71%), Gaps = 2/71 (2%)

Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEA 177
           V PP V+TRVSEY+PEIV  +I+KII NG AYESNGSVYF+V AF  +  H Y KL PE+
Sbjct: 145 VRPPDVITRVSEYVPEIV-DFIQKIIDNGFAYESNGSVYFDVEAF-RKAGHVYPKLEPES 202

Query: 178 YGDTKTLQEGE 188
             D   + EGE
Sbjct: 203 VADEDRIAEGE 213

Length = 651

>gnl|CDD|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional

 Score =  101 bits (255), Expect = 5e-23
 Identities = 39/71 (54%), Positives = 45/71 (63%)

Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
           KR P D  LW+ ++ GEP W SP+G GRPGWHIECS +A   LG   DI  GG DL FPH
Sbjct: 169 KRDPLDALLWRAARPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPH 228

Query: 848 HDNELAQAEGL 858
           H+   A AE  
Sbjct: 229 HEFSAAHAEAA 239

Length = 384

>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase

 Score = 97.3 bits (243), Expect = 7e-23
 Identities = 27/41 (65%), Positives = 30/41 (73%)

Query: 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGL 858
           WHIECS MA   LG   DIH GGVDL FPHH+NE+AQ+E  
Sbjct: 113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAA 153

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213

>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional

 Score = 96.9 bits (241), Expect = 7e-21
 Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 786 SEKRSPNDFALW-KKSKAGEP--WWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVD 842
           + KR+P+DF LW  +SK       W SPWG G PGWHIECS M+   LG Q DIH GGVD
Sbjct: 183 TNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVD 242

Query: 843 LKFPHHDNELAQAEG 857
               HH NE+AQ E 
Sbjct: 243 HIRVHHTNEIAQCEA 257

Length = 490

>gnl|CDD|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

 Score = 95.6 bits (238), Expect = 9e-21
 Identities = 39/71 (54%), Positives = 45/71 (63%)

Query: 788 KRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH 847
           KR P D  LW+ ++ GEP W SP+G GRPGWHIECS +A   LG   DI  GG DL FPH
Sbjct: 196 KRDPLDALLWRAAREGEPSWDSPFGRGRPGWHIECSAIALNRLGAGFDIQGGGSDLIFPH 255

Query: 848 HDNELAQAEGL 858
           H+   A AE  
Sbjct: 256 HEFSAAHAEAA 266

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 411

>gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 27/59 (45%), Positives = 39/59 (66%)

Query: 187 GEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVRV 245
            +V+GYP WPAR++   D  P   KY ++F+GT ET   + ++LFPYTE K K+GK + 
Sbjct: 11  AKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHETAFLKPEDLFPYTENKKKFGKPKK 69

This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. Length = 83

>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase

 Score = 82.6 bits (205), Expect = 8e-18
 Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
            ++Y+ FD+LRR L E   Y + Y  NITDIDDKIIKRAR+  L  K V +   +
Sbjct: 39  ARTYVVFDVLRRYL-EDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTK 92

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 86.2 bits (214), Expect = 3e-17
 Identities = 31/54 (57%), Positives = 42/54 (77%), Gaps = 2/54 (3%)

Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYL--FEKHVQENE 485
           ++Y+TFDI+RRIL +YF Y++ Y MNITDIDDKIIKRAR+  L  F +  ++ E
Sbjct: 80  RTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWE 133

Length = 651

>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
            +S + FD+LRR L +   Y++ +  N TDIDDKIIKRA+Q     + +    I 
Sbjct: 28  ARSAVAFDVLRRYL-QALGYDVQFVQNFTDIDDKIIKRAQQQGESFRELAARFIT 81

This family includes only cysteinyl tRNA synthetases. Length = 301

>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 77.7 bits (192), Expect = 8e-15
 Identities = 28/55 (50%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
            ++Y+ FD+LRR L  Y  Y +TY  NITDIDDKII RAR+  L  + V E  I 
Sbjct: 41  ARTYVVFDVLRRYL-RYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIA 94

Length = 464

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 78.1 bits (193), Expect = 9e-15
 Identities = 34/72 (47%), Positives = 43/72 (59%)

Query: 49  PSAVKLVDKETLAKEKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMET 108
           PS  KL DKE L +EKE K   + +K   K +K+ E    +  K  + KIPP+E FK + 
Sbjct: 542 PSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQE 601

Query: 109 DKYSQFDETVLP 120
           DKYS FDET LP
Sbjct: 602 DKYSAFDETGLP 613

Length = 651

>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated

 Score = 77.1 bits (191), Expect = 1e-14
 Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
            +S++ FD+LRR L  Y  Y +TY  NITDIDDKIIKRA + 
Sbjct: 42  ARSFVVFDVLRRYL-RYLGYKVTYVRNITDIDDKIIKRANEE 82

Length = 463

>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase

 Score = 77.0 bits (190), Expect = 1e-14
 Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
            ++ I FD+LRR L  Y  Y + Y  NITDIDDKIIKRAR+N      V E  I+
Sbjct: 40  ARTAIVFDVLRRYL-RYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIE 93

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464

>gnl|CDD|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 36/72 (50%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 788 KRSPNDFALW---KKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
           KR+ +DF LW    K K  E  W SPWG G P WH+EC+ M        LDIH GGVD  
Sbjct: 185 KRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHI 244

Query: 845 FPHHDNELAQAE 856
             HH NE+A AE
Sbjct: 245 GVHHINEIAIAE 256

Length = 481

>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated

 Score = 72.8 bits (180), Expect = 3e-13
 Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)

Query: 85  LAAAQEAKEAQKKIPPSEMFKMETDKY-SQFDET-----VLPPTVLTRVSEYIPEIVASY 138
           +  A E  E+ K++         T++Y + F E      VLPP +  R +E+IPEI+   
Sbjct: 76  IKRANEEGESIKEL---------TERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIE-L 125

Query: 139 IEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173
           IE++I  G AYE++G VYF+V  F       Y KL
Sbjct: 126 IERLIDKGHAYEADGDVYFDVRKFPD-----YGKL 155

Length = 463

>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 12/107 (11%)

Query: 85  LAAAQEAKEAQKKIPPSEMFKMETDKYSQFDE-TVLPPTVLTRVSEYIPEIVASYIEKII 143
           +  AQ+  E+ +++      +  T      D   VLPP +  RV+E+I EI+  +IE++I
Sbjct: 62  IKRAQQQGESFRELAA----RFITAYTKDMDALNVLPPDLEPRVTEHIDEII-EFIERLI 116

Query: 144 ANGLAYES-NGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEV 189
             G AY S NG VYF+V++F       Y KL  +     +    GEV
Sbjct: 117 KKGYAYVSDNGDVYFDVSSF-----PDYGKLSGQNLEQLEAGARGEV 158

This family includes only cysteinyl tRNA synthetases. Length = 301

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 69.3 bits (170), Expect = 5e-12
 Identities = 27/45 (60%), Positives = 31/45 (68%)

Query: 622 SIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQT 666
           SIF  L + WE EF +DM  LNV PP V+TRVSEY+PEIV   Q 
Sbjct: 123 SIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQK 167

Length = 651

>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 68.8 bits (169), Expect = 5e-12
 Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 23/102 (22%)

Query: 73  EKAAEKERKKAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDETVLPPTVLTRVSEYIP 132
            +A E+     E+A    A            F+   D  +     VLPP +  R +E+I 
Sbjct: 76  NRAREEGLSIREVAERYIA----------AFFED-MDALN-----VLPPDIEPRATEHID 119

Query: 133 EIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL 173
           EI+  +IEK+I  G AY + +G VYF+V+ F       Y KL
Sbjct: 120 EIIE-FIEKLIEKGYAYVADDGDVYFDVSKFKD-----YGKL 155

Length = 464

>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase

 Score = 68.2 bits (167), Expect = 1e-11
 Identities = 84/391 (21%), Positives = 137/391 (35%), Gaps = 117/391 (29%)

Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL--- 173
           VLPP +  R +E+I EI+  +IE++I  G AY S NG VYF+V+ F       Y KL   
Sbjct: 104 VLPPDLEPRATEHIDEII-EFIEQLIEKGYAYVSDNGDVYFDVSKFKD-----YGKLSKQ 157

Query: 174 ------------VPEAYGDT------KTLQEGEV-------RGYPPWPARIEGLADETPN 208
                       V EA  +       K+ +EGE        +G P W      + D+   
Sbjct: 158 DLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKY-- 215

Query: 209 RLKYHIFFYGTRETGICRQDELFPYTE---------FKDKYGKVRVH----------LSQ 249
            L   I  +G         D +FP+ E         F  +  K  +H          +S+
Sbjct: 216 -LGDQIDIHGG------GVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSK 268

Query: 250 KQQSLKLVV---------IMKEFFLNVKDHIRN-LKFP--------------ATTVSSFE 285
              +   V          I++ F L+V  H R+ L F                  +   +
Sbjct: 269 SLGNFFTVRDVLKNYDPEILRYFLLSV--HYRSPLDFSEELLEAAKNALERLYKALRVLD 326

Query: 286 KWTQADLELSTRFIQTKNNVHA----ALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLL 341
                    S      +    A    A+ D+++T +AL  + +    +N+      +  L
Sbjct: 327 TSLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVSKADAAL 386

Query: 342 LRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGV--ESTNLEELVLPYLTILSEFRDNIRT 399
           L         ++ +   +G +  +       G   +   +E L+              R+
Sbjct: 387 LI------EHLIFLESRLGLLLGLPSKPVQAGSNDDLGEIEALIEE------------RS 428

Query: 400 EARLIKSTEILNQCDRLRDEVLPNVGVRLED 430
            AR  K      + D +RDE L   G+ LED
Sbjct: 429 IARKEKD---FAKADEIRDE-LAKKGIVLED 455

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 60.4 bits (146), Expect = 2e-09
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 11/143 (7%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA----KKAESSSDD 717
           A+A+    A AK+    +++ +  E+E    KA AK  A A   AAA    K AE+    
Sbjct: 133 AAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGT 192

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK- 776
           +  +E+EK   K  A   A+A   A AK+  S  + DS  ED K    A AK  A AA  
Sbjct: 193 EEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAAR 252

Query: 777 ------PGDLSSQEASEKRSPND 793
                  G    +   E+ S N 
Sbjct: 253 AKTKGAEGKKEEEPKQEEPSVNQ 275

Length = 430

>gnl|CDD|216154 pfam00855, PWWP, PWWP domain

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 187 GEVRGYPPWPARIEGLADETPNRL----KYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++G+P WPARI     ETP  +    +  + F+G  +T       L P     +K+ K
Sbjct: 10  AKMKGFPWWPARIVSQK-ETPTSIRKDNRVKVQFFGDHKTAWVSPKRLKPLDVDIEKFHK 68

The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. The domain binds to Histone-4 methylated at lysine-20, H4K20me, suggesting that it is methyl-lysine recognition motif. Removal of two conserved aromatic residues in a hydrophobic cavity created by this domain within the full-lemgth protein, Pdp1, abolishes the interaction o f the protein with H4K20me3. In fission yeast, Set9 is the sole enzyme that catalyzes all three states of H4K20me, and Set9-mediated H4K20me is required for efficient recruitment of checkpoint protein Crb2 to sites of DNA damage. The methylation of H4K20 is involved in a diverse array of cellular processes, such as organising higher-order chromatin, maintaining genome stability, and regulating cell-cycle progression. Length = 74

>gnl|CDD|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain

 Score = 57.0 bits (138), Expect = 2e-08
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
           F  L   +   + KDM  LNVLPP +  RV+E+I EI+
Sbjct: 72  FRELAARFITAYTKDMDALNVLPPDLEPRVTEHIDEII 109

This family includes only cysteinyl tRNA synthetases. Length = 301

>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 56.5 bits (137), Expect = 4e-08
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 620 DNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
           +      + + + A F +DM  LNVLPP +  R +E+I EI+ 
Sbjct: 81  EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIE 123

Length = 464

>gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 187 GEVRGYPPWPARIEGLADETPNRL------KYHIFFYGTRETGICRQDELFPYTEFKDKY 240
            +++GYP WPA +     ++          K  + F+G +       + L P+TE K+  
Sbjct: 9   AKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKESE 68

Query: 241 GKVR 244
            K  
Sbjct: 69  AKQS 72

The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors. Length = 87

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 53.8 bits (129), Expect = 3e-07
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
           A A+    A  K AE+    +  +E+EK   KA A   A A   A AK+  S  + DS  
Sbjct: 173 AKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGD 232

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
           ED K      AK     AK AAA +A++   +    E+ K    +  +P
Sbjct: 233 EDAKAKAIAAAK-----AKAAAAARAKTKGAEGKKEEEPKQEEPSVNQP 276

Length = 430

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 53.0 bits (128), Expect = 5e-07
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVK 729
           A AKKA   + +  + E+  P   A A  +A A     AKKA   +      E       
Sbjct: 557 AKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAK----AKKAAQQAASAEPEEQVAEVDP 612

Query: 730 TPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR 789
             A   A  A+  A K  + ++ +     D + A  A A   A+A K      Q  +E  
Sbjct: 613 KKAAVAAAIARAKAKKAEQQANAEPEEPVDPRKAAVAAAIARAKARKAAQ--QQANAEPE 670

Query: 790 SPND 793
              D
Sbjct: 671 EAED 674

Length = 695

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 52.3 bits (125), Expect = 7e-07
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 1/127 (0%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
           A+A+    A AK+    +++ +  E      KA A   A AA  A  K+  +    +   
Sbjct: 99  AAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEE 158

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA-AKPGDL 780
           E +K   K  A   A+A   A AK+  + + + +    E+   KA AK  A A AK   L
Sbjct: 159 ETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKAKAAAAAKAKAAAL 218

Query: 781 SSQEASE 787
           + Q+AS+
Sbjct: 219 AKQKASQ 225

Length = 430

>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated

 Score = 52.4 bits (127), Expect = 8e-07
 Identities = 18/36 (50%), Positives = 25/36 (69%)

Query: 627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
           L + + A FH+DM  LNVLPP +  R +E+IPEI+ 
Sbjct: 89  LTERYIAAFHEDMDALNVLPPDIEPRATEHIPEIIE 124

Length = 463

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 52.3 bits (125), Expect = 9e-07
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 10/140 (7%)

Query: 659 EIVASAQTPKPAAAKKAESSS-------DDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA 711
           ++       + AAA KA++++         +  +E+EK   KA A   A A   A AK+ 
Sbjct: 53  DMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQK 112

Query: 712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPV 771
              +++   +E+EK A K  A   A+A   A AK+    +++ +  E+E    KA AK  
Sbjct: 113 REGTEE--VTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAA 170

Query: 772 AQA-AKPGDLSSQEASEKRS 790
           A A AK   L+ Q+A+E   
Sbjct: 171 AAAKAKAAALAKQKAAEAGE 190

Length = 430

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 52.3 bits (126), Expect = 9e-07
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
           A      A  +A  +    +++ D K A       VA A   A AKKA   + +  + E+
Sbjct: 521 AAREARKAQARARQAEKQAAAAADPKKAA------VAAAIARAKAKKAAQQAANAEAEEE 574

Query: 724 EKPAVKTPAKPVAQA-AKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
             P     A  +A+A AK AA + A +  ++  +  D K A  A A   A+A K    ++
Sbjct: 575 VDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKKAAVAAAIARAKAKKAEQQAN 634

Query: 783 QEASE 787
            E  E
Sbjct: 635 AEPEE 639

Length = 695

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 15/139 (10%)

Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPA--AAKKAESSSDDDSSSEDE 724
            K AA   A  S    +S++ +  A K   K  A  A  A  AAK A  ++    + +  
Sbjct: 199 AKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAK--KAKKTA 256

Query: 725 KPAVKTPAKPVAQAAKPAA--AKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
           K A+K  AK V +AAK AA  A KA   +           A K  AK   +A K     S
Sbjct: 257 KKALKKAAKAVKKAAKKAAKAAAKAAKGA---------AKATKGKAKAKKKAGKKAAAGS 307

Query: 783 QEASEKRSPNDFALWKKSK 801
           +  +  ++P   A  KK+K
Sbjct: 308 KAKATAKAPKRGAKGKKAK 326

Length = 333

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 52.2 bits (125), Expect = 1e-06
 Identities = 45/182 (24%), Positives = 61/182 (33%), Gaps = 33/182 (18%)

Query: 646  PPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSED--EKPAV--------KAP 695
                +    + +P   A+A+  KP A+    S SDDD          A         K  
Sbjct: 1281 QSAKMEETVKAVPARRAAAR-KKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPA 1339

Query: 696  AKPVAHAAEPAAAKKAESSS--------------DDDSSSEDEKPAVKTPAKPVAQ---- 737
            A     A  PAAAKK   ++               +      EK   K  A P  +    
Sbjct: 1340 AANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRASPFNKKSGS 1399

Query: 738  -AAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS---SQEASEKRSPND 793
               + A  K+ ESS +   SS  EK  +   AKP  Q A     +   S   SE    +D
Sbjct: 1400 VLGRAATNKETESSENVSGSSSSEKDEIDVSAKPRPQRANRKQTTYVLSDSESESADDSD 1459

Query: 794  FA 795
            F 
Sbjct: 1460 FD 1461

Length = 1465

>gnl|CDD|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 51.1 bits (123), Expect = 2e-06
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 298 FIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFG 357
             + +     AL D+ +T  AL  + +   ++N  L    +    + + + +  +L + G
Sbjct: 340 LKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKS--DAKAVLSALKALLAILG 397

Query: 358 CIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR 417
               +K +G        E  + +E +      L E R   R         +     D +R
Sbjct: 398 ----LKVLGLFPQSGAQEDESDDEEIE----ALIEERLEARKA-------KNWALADEIR 442

Query: 418 DEVLPNVGVRLED 430
           DE L  +G+ LED
Sbjct: 443 DE-LLALGIILED 454

Length = 464

>gnl|CDD|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 620 DNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRV 653
           +   +  +  ++  EF +DM  LNVLPP V+ RV
Sbjct: 79  EGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV 112

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Length = 213

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 50.7 bits (121), Expect = 2e-06
 Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 652 RVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAH------AAEP 705
           RV   +    A      PAA   A+ +S    S+  +    KA    V+       AA+ 
Sbjct: 189 RVLAAVGAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKA 248

Query: 706 AAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVK 765
           A   K  +      +++  K A K  AK  A+AAK AA      +     + +      K
Sbjct: 249 AKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308

Query: 766 APAKPVAQAAKPGDLSSQEASEKRS 790
           A A   A         +++ ++KR+
Sbjct: 309 AKATAKAPKRGAKGKKAKKVTKKRA 333

Length = 333

>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase

 Score = 49.9 bits (119), Expect = 5e-06
 Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 434 KSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSK--- 490
           + Y+TFD+L R L ++  Y + Y  N TD+DDKII RA +       + E+ I  S+   
Sbjct: 100 RVYVTFDVLYRYL-KHLGYEVRYVRNFTDVDDKIIARANE-------LGEDPISLSRRYC 151

Query: 491 --ILKDIGEVMGAFESKMKLVTD--PDKLTMMKNILSN 524
              L D+  +     S    V+D  P  + M+K IL N
Sbjct: 152 EEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDN 189

Length = 557

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 49.9 bits (120), Expect = 5e-06
 Identities = 34/110 (30%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 670 AAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD-DSSSEDEKPAV 728
           A AKKA   +      E         A  VA A   A AKKAE  ++       D + A 
Sbjct: 589 AKAKKAAQQAASAEPEEQVAEVDPKKAA-VAAAIARAKAKKAEQQANAEPEEPVDPRKAA 647

Query: 729 KTPAKPVAQAAKPAAAKKAESSSDDDS--SSEDEKPAVKAPAKPVAQAAK 776
                 VA A   A A+KA     +     +ED K A  A A   A+A K
Sbjct: 648 ------VAAAIARAKARKAAQQQANAEPEEAEDPKKAAVAAAIARAKAKK 691

Length = 695

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 7e-06
 Identities = 39/156 (25%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
           A A    PAA   A +++    +S    P V AP     H A P A     S   D   +
Sbjct: 617 APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDA-----SDGGDGWPA 671

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
           +    A   P    A AA  A A  A +                A   P  QA  P    
Sbjct: 672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP----------AATPPAGQADDPAAQP 721

Query: 782 SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817
            Q A    +P+  A        EP    P   G P 
Sbjct: 722 PQAAQGASAPSPAADDPVPLPPEP-DDPPDPAGAPA 756

Length = 824

>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 22/44 (50%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 119 LPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF 162
           LPP+V  RVS++IP+I+   I++I+ NG AY  +G VYF+V+ F
Sbjct: 164 LPPSVEPRVSDHIPQII-DMIKQILDNGCAYRVDGDVYFSVDKF 206

Length = 557

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)

Query: 687 DEKPAVKAPAKPVAH---AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPA- 742
           + K A K PA        +A+  +A K  S      ++   K A KT AK   +A K A 
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAK 257

Query: 743 -AAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSK 801
            A KKA  +          K A K  AK  A+AAK    +++  ++ +          SK
Sbjct: 258 KALKKAAKAV---------KKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSK 308

Query: 802 A 802
           A
Sbjct: 309 A 309

Length = 333

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 23/132 (17%), Positives = 43/132 (32%), Gaps = 9/132 (6%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEP----AAAKKAESSSDD 717
             A+  +      AES         +  PAV+  ++      +P      A  A     +
Sbjct: 333 VKAEVAEVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAE 392

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
            +S+  E+PA            +P   +KA    D    ++ ++ AV  P    A+    
Sbjct: 393 AASAAPEEPAALASEAH--DETEPEVPEKAAPIPD---PAKPDELAVAGPGDDPAEPDGI 447

Query: 778 GDLSSQEASEKR 789
                  +  +R
Sbjct: 448 RRQDDFSSRRRR 459

Length = 460

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 48.8 bits (116), Expect = 1e-05
 Identities = 34/162 (20%), Positives = 59/162 (36%), Gaps = 26/162 (16%)

Query: 652 RVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKP-------VAHAA 703
           R SEY+ +    A   +PA      +++   S++    P     P +P        A  A
Sbjct: 286 RGSEYVVD---EALEREPAEL----AAAAVASAASAVGPVGPGEPNQPDDVAEAVKAEVA 338

Query: 704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPA 763
           E      AES         +  PAV+  ++   +  +P      ++ +     +E    A
Sbjct: 339 EVTDEVAAESVVQVADRDGESTPAVEETSEADIEREQPGDLA-GQAPAAHQVDAEA---A 394

Query: 764 VKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
             AP +P A A++  D +  E  EK +P            +P
Sbjct: 395 SAAPEEPAALASEAHDETEPEVPEKAAP-------IPDPAKP 429

Length = 460

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVK---APAKPVAHAAEPAAAKKAESSSDD 717
            A+     PAA     ++   D +++ + P      A A   +   E  A   A+S S  
Sbjct: 419 AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSAS 478

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
             +S+    A   PA   A  +    A   ++ +   +S ED   A   PA P A+   P
Sbjct: 479 APASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPA-PEARPPTP 537

Query: 778 G 778
            
Sbjct: 538 A 538

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.1 bits (117), Expect = 1e-05
 Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 8/138 (5%)

Query: 661 VASAQTPKPAAAKKAE-------SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAES 713
             +A  PK AAA  A        + +   ++   +  A      P   A   A+A     
Sbjct: 406 AGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAK-ANARASADSRCD 464

Query: 714 SSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQ 773
             D    ++    +      P   A +PA    A S++   +  +   PA  +     A 
Sbjct: 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAA 524

Query: 774 AAKPGDLSSQEASEKRSP 791
           AA P   +        +P
Sbjct: 525 AAPPAPEARPPTPAAAAP 542

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 9/123 (7%)

Query: 689 KPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAE 748
            P  +A A   A A     A          ++     P     A      A PAA     
Sbjct: 382 APGARAAAAVGASAVPAVTAVTG-------AAGAALAPKAAAAAAATRAEAPPAAPAPPA 434

Query: 749 SSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWS 808
           ++   D +++ + P         +  ++  +  +Q  ++  S    A    +     +  
Sbjct: 435 TADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGS--ASAPASDAPPDAAFEP 492

Query: 809 SPW 811
           +P 
Sbjct: 493 APR 495

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 21/144 (14%), Positives = 40/144 (27%), Gaps = 5/144 (3%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
            +       A+     ++   ++     P   A A      A PAA     ++   D ++
Sbjct: 384 GARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAA 443

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
           + + P         +  ++         +     S     PA  AP     + A      
Sbjct: 444 DGDAPVPAKANARASADSRCDERDAQPPA----DSGSASAPASDAPPDAAFEPAPRAAAP 499

Query: 782 SQEASEKRSPNDFALWKKSKAGEP 805
           S        P+  A    S+   P
Sbjct: 500 SAATP-AAVPDARAPAAASREDAP 522

Length = 830

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 46.8 bits (111), Expect = 4e-05
 Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 17/140 (12%)

Query: 663 SAQTPKPAAAKKAESS-SDDDSSSEDEKPAVKAPAKPVA---------------HAAEPA 706
           S +  + AAA++A ++ +   +++    PA +    P+A                AA+PA
Sbjct: 262 SPERKERAAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPA 321

Query: 707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKA 766
           AA KA     D      EK A K        A KPA      +SS  D        A + 
Sbjct: 322 AADKAADKPAD-RPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAART 380

Query: 767 PAKPVAQAAKPGDLSSQEAS 786
           PA+    AA   D     AS
Sbjct: 381 PARARDAAAPDADTPPGGAS 400

Length = 413

>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle

 Score = 46.8 bits (110), Expect = 4e-05
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 10/122 (8%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
             A+  KP   ++   SS +DS SE+E PA K P +       P    KA S+   +S  
Sbjct: 13  TQAKAEKP---EEDSESSSEDSDSEEEMPAAKNPPQAKPSGKSPQV--KAASAPAKESPQ 67

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
           +   P     A P A      A ++   SS+++S SE E P         AQ AKP   +
Sbjct: 68  KGAPPVTPGKAGPAA----AQAGEEEAKSSEEESDSEGETPTAATLTTSPAQ-AKPLGKN 122

Query: 782 SQ 783
           SQ
Sbjct: 123 SQ 124

Length = 519

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (112), Expect = 5e-05
 Identities = 30/137 (21%), Positives = 44/137 (32%), Gaps = 12/137 (8%)

Query: 653 VSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE 712
           V        ++        A+    S    + + D  P       P A A   A      
Sbjct: 449 VPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVP 508

Query: 713 SSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSS-----------SEDEK 761
            +    ++S ++ PA   P  P A+   PAAA  A  +    ++           S D  
Sbjct: 509 DARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRG 568

Query: 762 PAVKAPAKPVA-QAAKP 777
               A AKP A  AA P
Sbjct: 569 ARAAAAAKPAAAPAAAP 585

Length = 830

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAV-KAPAKPVAHAAEPAAAKKAESSSDDDS 719
           V     P+   A    + +   +++  +  A  KAPAKP A +  PAA    + +    +
Sbjct: 118 VEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSPRPAAKAAPKPTETITA 177

Query: 720 SSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
               +K      A           AKK        
Sbjct: 178 ----KKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208

Length = 209

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 2e-04
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 8/149 (5%)

Query: 649 VLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708
           VL R+  + P   A A  P          ++   ++   +  A  APA   A AA   AA
Sbjct: 357 VLLRLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAA 416

Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
             A +             A    A P A  A   AA     +    ++ E     V+   
Sbjct: 417 PPAAAPP--------APVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP 468

Query: 769 KPVAQAAKPGDLSSQEASEKRSPNDFALW 797
           +P   +A P   ++  A+      +  +W
Sbjct: 469 EPAVASAAPAPAAAPAAARLTPTEEGDVW 497

Length = 618

>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional

 Score = 45.0 bits (106), Expect = 2e-04
 Identities = 35/146 (23%), Positives = 50/146 (34%), Gaps = 10/146 (6%)

Query: 647  PTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPA 706
                 R +  I       Q   PAA  +    +    S+E    AV       A  A  A
Sbjct: 908  ANSARRDTMEIQNEQKPTQD-GPAAEAQPAQENTVVESAEKAVAAVSE----AAQQAATA 962

Query: 707  AAKKAESSSDDDSSSEDEKPAVKTPAKPVA---QAAKPAAAKKAESSSDDDSSSEDEK-P 762
             A   E  + +       +   K  A   A   + AK A AKKA +       +  +K  
Sbjct: 963  VASGIEKVA-EAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKV 1021

Query: 763  AVKAPAKPVAQAAKPGDLSSQEASEK 788
            A KAPAK VA+       + + A + 
Sbjct: 1022 AKKAPAKKVARKPAAKKAAKKPARKA 1047

Length = 1052

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 44.2 bits (105), Expect = 3e-04
 Identities = 32/103 (31%), Positives = 43/103 (41%), Gaps = 25/103 (24%)

Query: 851 ELAQAEGLPTHDQEGKELSKGLAKKLKKLQL-------TQEKKYNEYIASVQKATLHGLL 903
              Q        QE K+  K   +KL+K ++        QE KY+               
Sbjct: 563 LKEQKRLRKLKKQEEKK--KKELEKLEKAKIPPAEFFKRQEDKYSA-------------- 606

Query: 904 VCFCFQGLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIAS 946
             F   GLPTHD +G+E+SK   KKL K    Q K + EY+A 
Sbjct: 607 --FDETGLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAK 647

Length = 651

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 44.6 bits (106), Expect = 3e-04
 Identities = 28/133 (21%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKA-PAKPVAHAAEPAAAKKAESSSDDDSS 720
           A  +    AA  + ++     +     K   +   +  +A      A  +A  +    ++
Sbjct: 482 AKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAA 541

Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE--DEKPAVKAPAKPVAQAAKPG 778
           + D K A       VA A   A AKKA   + +  + E  D K A  A A   A+A K  
Sbjct: 542 AADPKKAA------VAAAIARAKAKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAA 595

Query: 779 DLSSQEASEKRSP 791
             ++    E++  
Sbjct: 596 QQAASAEPEEQVA 608

Length = 695

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.5 bits (105), Expect = 3e-04
 Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 10/135 (7%)

Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
               A+     P AA  A       +++  E P         A   + AA   A   +  
Sbjct: 401 AVTGAAGAALAPKAAAAA-------AATRAEAPPAAPAPPATADRGDDAADGDAPVPAKA 453

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
           ++ +  +    +  A+P A +   +A     S +  D++ E    A    A   A     
Sbjct: 454 NARASADSRCDERDAQPPADSGSASAPA---SDAPPDAAFEPAPRAAAPSAATPAAVPDA 510

Query: 778 GDLSSQEASEKRSPN 792
              ++    +  +  
Sbjct: 511 RAPAAASREDAPAAA 525

Length = 830

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 676 ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPV 735
           +++S  + ++E++   V  P +P+     P A      +    +++     A K PAKP 
Sbjct: 98  KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157

Query: 736 AQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP--VAQAAKPGDLSSQEA 785
           A++ +PAA    + +    +    +  A   P        A K       +A
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTKA 209

Length = 209

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 3/136 (2%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHA---AEPAAAKKAESSSDDD 718
           A+ +  +   A    +++    +  + K A  A  K  A A   AE  AAKKA + +   
Sbjct: 127 AALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKK 186

Query: 719 SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPG 778
           + +E    A     K     AK  AA +A+  +  ++ +   K A +A A     AA   
Sbjct: 187 AEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKA 246

Query: 779 DLSSQEASEKRSPNDF 794
              +  A      +D 
Sbjct: 247 AEKAAAAKAAAEVDDL 262

Length = 387

>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional

 Score = 43.9 bits (104), Expect = 4e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query: 857 GLPTHDQEGKELSKGLAKKLKKLQLTQEKKYNEYIASVQK 896
           GLPTHD +G+E+SK   KKL K    Q K + EY+A   K
Sbjct: 611 GLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGK 650

Length = 651

>gnl|CDD|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
             + +DM  LNVLPP +  R +E+I EI+
Sbjct: 93  EAYFEDMKALNVLPPDLEPRATEHIDEII 121

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln) [Protein synthesis, tRNA aminoacylation]. Length = 464

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 44.1 bits (104), Expect = 4e-04
 Identities = 46/191 (24%), Positives = 64/191 (33%), Gaps = 36/191 (18%)

Query: 662  ASAQTPKPAAA----KKAESS-----SDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAE 712
             S Q PK  A     KKA  S     +   S+ E E  A     K  A A + A A   E
Sbjct: 1197 VSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKE 1256

Query: 713  SSSDDD------------------SSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDD 754
               +D+                   S++ E+     PA+  A   KP A+    S SDDD
Sbjct: 1257 KEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSDDD 1316

Query: 755  ---------SSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
                      +   +K   + PA    +AAKP   + +            L +  K  E 
Sbjct: 1317 DDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAAAKKRGPATVQSGQKLLTEMLKPAEA 1376

Query: 806  WWSSPWGEGRP 816
               SP  + R 
Sbjct: 1377 IGISPEKKVRK 1387

Length = 1465

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 44.1 bits (105), Expect = 4e-04
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 677 SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVA 736
             S    ++     A  A A   A AA+  AA      +    ++   KPA    A   A
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAA-PPKPA----AAAAA 92

Query: 737 QAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQ 773
            AA  A    A +++   ++ EDE   ++  A  VA+
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAK 129

Length = 1228

>gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 187 GEVRGYPPWPARI--EGLADETPNRLK--YHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++G+PPWP RI       + P      + +FF+G+      +++ + PY E K++  K
Sbjct: 9   AKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENHAWIKEENIKPYHEHKEEMIK 68

Query: 243 V 243
           +
Sbjct: 69  L 69

In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes. Length = 86

>gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 187 GEVRGYPPWPARIEGLADETPNRLK-------YHIFFYGTRETGICRQDELFPYT 234
            +++G+P WPA +        N +K       Y + F+G ++T      +LFP T
Sbjct: 9   AKMKGFPWWPALVISPKMTPDNIMKRKSDENLYPVLFFGDKDTAWIPSSKLFPLT 63

conservation of Pro-Trp-Trp-Pro residues. Length = 63

>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEK 761
            A+ AA   A  S    +S++ +  A K   K   +AAK A + K  + +   ++ + +K
Sbjct: 198 NAKKAAKTPAAKSGAKKASAKAKSAAKKVSKK---KAAKTAVSAKKAAKTAAKAAKKAKK 254

Query: 762 PAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEP 805
            A KA  K      K    +++ A++       A   K+KA + 
Sbjct: 255 TAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKK 298

Length = 333

>gnl|CDD|237082 PRK12373, PRK12373, NADH dehydrogenase subunit E; Provisional

 Score = 43.3 bits (102), Expect = 5e-04
 Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 667 PKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKP 726
                A KA +    D+    +   V   A     AA    ++ A   S D  +      
Sbjct: 203 KARYNASKALAEDIGDTVKRIDGTEVPLLAPWQGDAAPVPPSEAARPKSADAET----NA 258

Query: 727 AVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
           A+KTPA     AAK A A +A+  S   ++     PA K  AK  A AAKP
Sbjct: 259 ALKTPATAPKAAAKNAKAPEAQPVSGTAAAE----PAPKEAAKAAAAAAKP 305

Length = 400

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 5e-04
 Identities = 28/149 (18%), Positives = 52/149 (34%), Gaps = 3/149 (2%)

Query: 661 VASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
            ASAQ      A  A   +          P            ++  AA++    +   + 
Sbjct: 378 AASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATK 437

Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA---AKP 777
           ++  +PA  + A+PV  A +  A+ +   S+ + + ++ E    KA      +    A P
Sbjct: 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATP 497

Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPW 806
             L      EK       L  ++   +PW
Sbjct: 498 KALKKALEHEKTPELAAKLAAEAIERDPW 526

Length = 647

>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase

 Score = 43.4 bits (102), Expect = 6e-04
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV 661
           +L + +  EF  DMA L+ LPP+V  RVS++IP+I+
Sbjct: 145 SLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQII 180

Length = 557

>gnl|CDD|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional

 Score = 43.0 bits (101), Expect = 6e-04
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 18/80 (22%)

Query: 121 PTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGD 180
           P+++   +E+I +++A  I+++ A G  Y + G+VYF++  F S     Y  L   A   
Sbjct: 119 PSIVCNATEHIQDMIA-LIKRLEARGHTYCAGGNVYFDIRTFPS-----YGSL---ASAA 169

Query: 181 TKTLQEGEVRGYPPWPARIE 200
            + LQ G         ARIE
Sbjct: 170 VEDLQAG---------ARIE 180

Length = 490

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 19/114 (16%), Positives = 39/114 (34%)

Query: 657 IPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSD 716
           +P+  A  + PK   A K  +  D+D     ++      AKP     E +      +   
Sbjct: 8   LPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKK 67

Query: 717 DDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKP 770
               +E    + +       ++A+   +   +S +    S E+E+P        
Sbjct: 68  SSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIA 121

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 7e-04
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 649 VLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA 708
           +L R+      +  +     PAAA  + +++   ++      A  A A P   AA   A 
Sbjct: 374 LLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAP 433

Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
             A + +    +         +P    A +A+PA A    ++ +  ++     PA  APA
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPA--PAAAPEPTAAPAPAPPAAPAPA 491

Query: 769 KPVAQAAKPG 778
              A  A P 
Sbjct: 492 AAPAAPAAPA 501

Length = 824

>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle

 Score = 43.0 bits (100), Expect = 7e-04
 Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 690 PAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAES 749
           PA      P A  A+    ++   SS +DS SE+E PA K P +       P    KA S
Sbjct: 2   PAPPGKTGPAATQAKAEKPEEDSESSSEDSDSEEEMPAAKNPPQAKPSGKSPQV--KAAS 59

Query: 750 SSDDDSSSEDEKPAVKAPAKPVA-QAAKPGDLSSQEASE 787
           +   +S  +   P     A P A QA +    SS+E S+
Sbjct: 60  APAKESPQKGAPPVTPGKAGPAAAQAGEEEAKSSEEESD 98

Length = 519

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 7e-04
 Identities = 53/263 (20%), Positives = 78/263 (29%), Gaps = 34/263 (12%)

Query: 644 VLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHA- 702
              P      +   P   A A    PAA   A              PA  A A+ VA A 
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA--------------PAAAAAARAVAAAP 423

Query: 703 --AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDE 760
               PA    A +                 PA   A AA+PAAA     ++   ++    
Sbjct: 424 ARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARA 483

Query: 761 KPAVKAPAKPVAQAAKP-GDLSSQEASEKRSPND--FALWKKSKAGEPWWSSPWGEGRPG 817
            PA  A   P      P  +L  + AS   +  D   A W      +P  + P       
Sbjct: 484 APA--AAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETL 541

Query: 818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKGLAKKLK 877
                +   +A   P+    T  V    P      + +      D +   L+  L  +  
Sbjct: 542 -----APAPAAAPAPRAAAATEPVVAPRP---PRASASGLPDMFDGDWPALAARLPVR-- 591

Query: 878 KLQLTQEKKYNEYIASVQKATLH 900
              L Q+      +A V+  T+ 
Sbjct: 592 --GLAQQLARQSELAGVEGDTVR 612

Length = 700

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 42.6 bits (100), Expect = 7e-04
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 665 QTPKPAAAKKAESSSDDDSSSED-EKPAVKAPAKPVAHA---AEPAAAKKAESSSDDDSS 720
           Q  K AA +K ++ +    ++ +  K    A AK  A     A   A  KAE+++    +
Sbjct: 137 QARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKA 196

Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL 780
             + K A +         AK  A KKAE+++++ +++E +K A KA A   A AAK  + 
Sbjct: 197 EAEAKAAAEKAKA--EAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAER 254

Query: 781 SSQEAS 786
            +  A+
Sbjct: 255 KAAAAA 260

Length = 387

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 42.7 bits (100), Expect = 8e-04
 Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 7/133 (5%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
             A+  K   A+  +  + +      ++     PA  V   +E    ++        + +
Sbjct: 328 DVAEAVKAEVAEVTDEVAAESVVQVADRDGESTPA--VEETSEADIEREQPGDLAGQAPA 385

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
             +  A    A P   AA  + A         + ++    PA   P +     A PGD  
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPA--KPDELAV--AGPGD-D 440

Query: 782 SQEASEKRSPNDF 794
             E    R  +DF
Sbjct: 441 PAEPDGIRRQDDF 453

Length = 460

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 42.6 bits (99), Expect = 8e-04
 Identities = 46/144 (31%), Positives = 59/144 (40%), Gaps = 4/144 (2%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
           A+A   + AAAKKA + S    S++   PA KA A P   AA PA A  A + +    + 
Sbjct: 195 AAAAAKQKAAAKKAAAPSGK-KSAKAAAPA-KAAAAPAKAAAPPAKAAAAPAKAAAAPAK 252

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS 781
               PA K  A P   AA PA A    + +    +     PA KA A P   AA P   +
Sbjct: 253 AAAPPA-KAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA-KAAAAPAKAAAAPAKAA 310

Query: 782 SQEASEKRSPNDFALWKKSKAGEP 805
           +  A     P   A      A  P
Sbjct: 311 AAPAKAAAPPAKAAAPPAKAATPP 334

Length = 357

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 25/117 (21%), Positives = 35/117 (29%), Gaps = 12/117 (10%)

Query: 663 SAQTPKPAAA--KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSS 720
            A +    A   K AE ++  +     E P       P    A  AA   A   +     
Sbjct: 98  KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157

Query: 721 SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
           ++  +PA K   KP        A K A +           KP     A P  +  K 
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAA----------PKPTADKTATPAKKTTKK 204

Length = 209

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 42.1 bits (100), Expect = 0.001
 Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 20/122 (16%)

Query: 648 TVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAA 707
           TV   V + +  I   A     AAA  A +++    ++   +    A A+    A  PAA
Sbjct: 66  TVT--VGQVLGRIDEGAAAGAAAAAAAAAAAA----AAAPAQAQAAAAAEQSNDALSPAA 119

Query: 708 AKKAESSSDDDSS-----------SEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSS 756
            K A  +  D S+            ED    +   A   A  A PAAA  A + +   + 
Sbjct: 120 RKLAAENGLDASAVKGTGKGGRVTKED---VLAALAAAAAAPAAPAAAAPAAAPAPLGAR 176

Query: 757 SE 758
            E
Sbjct: 177 PE 178

Length = 407

>gnl|CDD|237182 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional

 Score = 42.3 bits (99), Expect = 0.001
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 4/129 (3%)

Query: 652 RVSEYIPEIVASAQTPKPAAAKKAESS-SDDDSSSEDEKPAVKAPAKPVA--HAAEPAAA 708
           R +E I EIVA++   +    +  E++ SD  +++    PA +AP KP A  HA    +A
Sbjct: 33  RTAEGI-EIVAASNYDEELVQRALETARSDTPATAAAPAPAPQAPTKPAAPVHAPLKLSA 91

Query: 709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPA 768
               S     +S+ ++  A     +PV+   +  AA    ++S    +++    A     
Sbjct: 92  NANMSQRQRVASAAEDMIAAMALRQPVSVPRQAPAAAPVRAASIPSPAAQALAHAAAVRT 151

Query: 769 KPVAQAAKP 777
            P  + A  
Sbjct: 152 APRQEHALS 160

Length = 559

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.0 bits (98), Expect = 0.001
 Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 29/156 (18%)

Query: 661 VASAQTPK----PAAAKKAESSS-----------DDDSSSEDEKPAVKAPAKPVAHAAEP 705
               QT      P+  K A   S           D    ++      +  AK +  A+E 
Sbjct: 404 QTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWEDAPDEAQTAAGTAQTSAKSIQTASEA 463

Query: 706 AAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAA--------------KPAAAKKAESSS 751
               + + S +  + +E + P  + P++   QA                PA         
Sbjct: 464 ETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFP 523

Query: 752 DDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASE 787
           D+D   ED         +  A A   G  + +EA  
Sbjct: 524 DNDCPPEDGAEIPPPDWEHAAPADTAGGGADEEAEA 559

Length = 709

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 35/164 (21%), Positives = 50/164 (30%), Gaps = 15/164 (9%)

Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
           P    ++     + A  +  ++   SS E+   A  +P      +  PAAA         
Sbjct: 152 PPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSE----DEKPAVKAPAKPVAQ 773
             S+    PA   PA         +AA  A +SS D SSSE       P  + P    A 
Sbjct: 212 PISASASSPA---PAPG------RSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAP 262

Query: 774 AAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG 817
              P  +         S         S +     S       PG
Sbjct: 263 ITLPTRIWEASGWNGPSSR--PGPASSSSSPRERSPSPSPSSPG 304

Length = 1352

>gnl|CDD|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated

 Score = 41.2 bits (98), Expect = 0.002
 Identities = 32/166 (19%), Positives = 52/166 (31%), Gaps = 33/166 (19%)

Query: 269 DHIRNLKFPATTVSSFEKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQ 328
           + + N           E       E   RFI        A+ D+ +T  AL  + +   +
Sbjct: 317 ERLYNALAETALGEDDEALLAELEEFKERFI-------EAMDDDFNTPEALAVLFELARE 369

Query: 329 VNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLT 388
           +N  L     +            +  V G +   +   F      +    +E L+     
Sbjct: 370 INRALETKDKEAAAALAALLR-ALADVLG-LEQDEEALFEAAADELLDAEIEALI----- 422

Query: 389 ILSEFRDNIRTEARLIK----STEILNQCDRLRDEVLPNVGVRLED 430
                    R EAR  K    +       D +RDE L  +G+ LED
Sbjct: 423 -------EERQEARKAKDFALA-------DAIRDE-LAALGIVLED 453

Length = 463

>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 21/38 (55%), Positives = 26/38 (68%), Gaps = 1/38 (2%)

Query: 437 ITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
           + FD++ R L E   Y +TY  NITDIDDKII RA +N
Sbjct: 271 VVFDMIARWLRE-CGYPLTYVRNITDIDDKIIARAAEN 307

Length = 699

>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 36/142 (25%), Positives = 58/142 (40%), Gaps = 9/142 (6%)

Query: 664 AQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSED 723
           ++  +    K+     +DD + E+ K    A AK  A AA  A  K+  +       +E+
Sbjct: 35  SKLEEENREKEKALPKNDDMTIEEAKRRAAAAAK--AKAAALAKQKREGTEE----VTEE 88

Query: 724 EKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA---KPGDL 780
           EK   K  A   A+A   A AK+    +++ +  E      KA A   A+AA   K    
Sbjct: 89  EKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKRE 148

Query: 781 SSQEASEKRSPNDFALWKKSKA 802
            ++E +E+    D    K   A
Sbjct: 149 GTEEVTEEEEETDKEKAKAKAA 170

Length = 430

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 5/96 (5%)

Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
            +I           A  A     + +S+  E+PA  A         EP   +KA    D 
Sbjct: 369 ADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAH--DETEPEVPEKAAPIPD- 425

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDD 753
              ++ ++ AV  P    A+           S    
Sbjct: 426 --PAKPDELAVAGPGDDPAEPDGIRRQDDFSSRRRR 459

Length = 460

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 3/134 (2%)

Query: 662 ASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
             A+  K  AA +A        + +  + A KA  +  A A   AA KKAE+ +   +  
Sbjct: 147 KKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP---G 778
              +   K  A+  A+AA    A   +  +   + ++    A KA  +  A AA     G
Sbjct: 207 AKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAALDDIFG 266

Query: 779 DLSSQEASEKRSPN 792
            LSS + + K    
Sbjct: 267 GLSSGKNAPKTGGG 280

Length = 387

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.6 bits (97), Expect = 0.002
 Identities = 41/158 (25%), Positives = 61/158 (38%), Gaps = 19/158 (12%)

Query: 663 SAQTP-KPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSS 721
           SAQT  K  AAKK +           E    + P +  + AA P+  K A   S+ +++ 
Sbjct: 381 SAQTAEKETAAKKPQPRP--------EAETAQTPVQTASAAAMPSEGKTAGPVSNQENN- 431

Query: 722 EDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVA---QAAKPG 778
            D  P    P      AA  A      S+    ++SE E P     +K  A   +   P 
Sbjct: 432 -DVPPWEDAPD-EAQTAAGTAQT----SAKSIQTASEAETPPENQVSKNKAADNETDAPL 485

Query: 779 DLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRP 816
                E   + +PND A+  ++ A E      +G G P
Sbjct: 486 SEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFP 523

Length = 709

>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)

 Score = 41.9 bits (98), Expect = 0.002
 Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 8/120 (6%)

Query: 676 ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPV 735
            S+S +D    ++K + + PAKP     E +   + E + ++   S+      K   K  
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG----KKLKKLK 345

Query: 736 AQAAKPAAAKKAESSSDDDSSSEDEK--PAVKAPAKPVAQAAKPGD--LSSQEASEKRSP 791
            +               DDS  + E     V A  +   +  +P D   SS   S    P
Sbjct: 346 GKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGPARP 405

Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II. Length = 528

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 27/105 (25%), Positives = 32/105 (30%), Gaps = 12/105 (11%)

Query: 646 PPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEP 705
                       P   ASA    PAAA  A  ++          PA  APA   A A   
Sbjct: 395 AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA----------PAAAAPAAAPAAAPAA 444

Query: 706 AAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESS 750
            A   A +     +      P    P   VA AA   AA  A + 
Sbjct: 445 VAL--APAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 0.003
 Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 13/98 (13%)

Query: 686 EDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAK 745
            D  P   A     A AA  AA+  A + +    ++    P          + A  AAA 
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 746 KAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQ 783
            A               A  A A   A AA   +    
Sbjct: 94  AA-------------PAAPPAAAAAAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.003
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 9/132 (6%)

Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
           P  +  A      +++   +SS          P+   P+ P +  A  +    + SSS  
Sbjct: 266 PTRIWEASGWNGPSSRPGPASSSSSPRERSPSPS---PSSPGSGPAPSSPRASSSSSSSR 322

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAK---PVAQA 774
           +SSS        +       A  P  +     S        D     K P     P + A
Sbjct: 323 ESSSSSTSS---SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPA 379

Query: 775 AKPGDLSSQEAS 786
           A  G  + + A 
Sbjct: 380 ASAGRPTRRRAR 391

Length = 1352

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 22/126 (17%), Positives = 33/126 (26%), Gaps = 9/126 (7%)

Query: 663 SAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSE 722
           S Q     A          + +   +  A  APA     A  P A  K         ++ 
Sbjct: 187 SKQVEVTTAGDLLPPGQAREQAQGAKS-ATAAPATVPQAAPLPQAQPKK--------AAT 237

Query: 723 DEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS 782
           +E+           + A  AA         DD   E E+            A K  +  +
Sbjct: 238 EEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEGVT 297

Query: 783 QEASEK 788
               E 
Sbjct: 298 VTPVEG 303

Length = 423

>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed

 Score = 40.9 bits (95), Expect = 0.003
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 668 KPAAAKKAESSSDDDSSSEDEKPAVKAPAK-PVAHAAEPAAAKKAE----SSSDDDSSSE 722
            P AA    S+    S+      A+ +PA  P +   + A   +A     SS+    S  
Sbjct: 299 VPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDV 358

Query: 723 DEKPAVKTPA-KPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA 774
                V  PA +PV    +P +  + + SS  + +S    P    PA P +  
Sbjct: 359 TLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNI 411

Length = 421

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 15/68 (22%), Positives = 22/68 (32%)

Query: 685 SEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAA 744
                P   APA   A  AE    +K ++++         KP     AKP   A      
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 745 KKAESSSD 752
               + +D
Sbjct: 179 PTPVARAD 186

Length = 418

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	948
KOG2007|consensus	586		100.0
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PTZ00399	651	cysteinyl-tRNA-synthetase; Provisional	100.0
PF01406	300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	100.0
PLN02946	557	cysteine-tRNA ligase	100.0
COG0215	464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	100.0
KOG2007|consensus	586		100.0
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	100.0
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14534	481	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	100.0
PLN02946	557	cysteine-tRNA ligase	100.0
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	100.0
PTZ00399	651	cysteinyl-tRNA-synthetase; Provisional	100.0
PRK14535	699	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14536	490	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14534	481	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK00260	463	cysS cysteinyl-tRNA synthetase; Validated	100.0
PRK12418	384	cysteinyl-tRNA synthetase; Provisional	100.0
TIGR03447	411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	100.0
TIGR00435	465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
PF01406	300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	100.0
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	100.0
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	99.95
PRK11893	511	methionyl-tRNA synthetase; Reviewed	99.93
PRK11893	511	methionyl-tRNA synthetase; Reviewed	99.86
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	99.81
cd00672	213	CysRS_core catalytic core domain of cysteinyl tRNA	99.78
cd00668	312	Ile_Leu_Val_MetRS_core catalytic core domain of is	99.75
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	99.71
cd00814	319	MetRS_core catalytic core domain of methioninyl-tR	99.55
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	99.52
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	99.46
PLN02224	616	methionine-tRNA ligase	99.46
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	99.44
PRK12268	556	methionyl-tRNA synthetase; Reviewed	99.43
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	99.43
cd07963	156	Anticodon_Ia_Cys Anticodon-binding domain of cyste	99.4
PRK12267	648	methionyl-tRNA synthetase; Reviewed	99.37
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.33
PLN02224	616	methionine-tRNA ligase	99.32
cd00812	314	LeuRS_core catalytic core domain of leucyl-tRNA sy	99.27
PRK01611	507	argS arginyl-tRNA synthetase; Reviewed	99.26
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	99.25
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	99.22
TIGR00398	530	metG methionyl-tRNA synthetase. The methionyl-tRNA	99.17
cd00802	143	class_I_aaRS_core catalytic core domain of class I	99.16
PRK12268	556	methionyl-tRNA synthetase; Reviewed	99.14
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	99.07
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	99.01
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	98.93
PLN02610	801	probable methionyl-tRNA synthetase	98.87
PF09190	63	DALR_2: DALR domain; InterPro: IPR015273 The amino	98.85
smart00840	56	DALR_2 This DALR domain is found in cysteinyl-tRNA	98.79
PRK12267	648	methionyl-tRNA synthetase; Reviewed	98.77
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	98.75
cd00818	338	IleRS_core catalytic core domain of isoleucyl-tRNA	98.73
PRK04156	567	gltX glutamyl-tRNA synthetase; Provisional	98.58
cd00817	382	ValRS_core catalytic core domain of valyl-tRNA syn	98.5
KOG0436|consensus	578		98.45
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	98.38
PLN02843	974	isoleucyl-tRNA synthetase	98.29
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	98.2
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	98.2
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	98.19
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	98.09
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	98.06
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	98.06
TIGR00395	938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	98.05
cd00671	212	ArgRS_core catalytic core domain of arginyl-tRNA s	98.02
cd07955	81	Anticodon_Ia_Cys_like Anticodon-binding domain of	97.99
cd09287	240	GluRS_non_core catalytic core domain of non-discri	97.97
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	97.9
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	97.88
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	97.79
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	97.74
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	97.74
PLN02959	1084	aminoacyl-tRNA ligase	97.74
PLN02943	958	aminoacyl-tRNA ligase	97.73
PRK12451	562	arginyl-tRNA synthetase; Reviewed	97.62
PRK12300	897	leuS leucyl-tRNA synthetase; Reviewed	97.54
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	97.51
PLN02882	1159	aminoacyl-tRNA ligase	97.47
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	97.46
PTZ00419	995	valyl-tRNA synthetase-like protein; Provisional	97.17
COG0143	558	MetG Methionyl-tRNA synthetase [Translation, ribos	97.16
PLN02843	974	isoleucyl-tRNA synthetase	96.98
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	96.95
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	96.85
PF09334	391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	96.82
PLN02563	963	aminoacyl-tRNA ligase	96.65
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	96.64
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	96.58
PRK00390	805	leuS leucyl-tRNA synthetase; Validated	96.51
TIGR00422	861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	96.44
cd00674	353	LysRS_core_class_I catalytic core domain of class	96.42
PLN02959	1084	aminoacyl-tRNA ligase	96.41
TIGR00396	842	leuS_bact leucyl-tRNA synthetase, eubacterial and	96.37
PRK05729	874	valS valyl-tRNA synthetase; Reviewed	96.26
PRK05743	912	ileS isoleucyl-tRNA synthetase; Reviewed	96.25
PLN02610	801	probable methionyl-tRNA synthetase	96.24
KOG0437|consensus	1080		96.08
PRK13208	800	valS valyl-tRNA synthetase; Reviewed	95.94
PLN02381	1066	valyl-tRNA synthetase	95.5
PRK13804	961	ileS isoleucyl-tRNA synthetase; Provisional	94.94
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	94.88
PF00133	601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	94.69
KOG0436|consensus	578		94.32
cd00802	143	class_I_aaRS_core catalytic core domain of class I	94.04
PRK06039	975	ileS isoleucyl-tRNA synthetase; Reviewed	94.02
COG0018	577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	93.67
cd00674	353	LysRS_core_class_I catalytic core domain of class	93.54
TIGR00392	861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	93.26
PRK14900	1052	valS valyl-tRNA synthetase; Provisional	93.1
PLN02286	576	arginine-tRNA ligase	93.07
KOG0432|consensus	995		92.4
cd09287	240	GluRS_non_core catalytic core domain of non-discri	92.29
COG0495	814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	91.85
PLN02882	1159	aminoacyl-tRNA ligase	91.6
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	91.35
TIGR00463	560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	90.77
TIGR00467	515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	90.46
PTZ00427	1205	isoleucine-tRNA ligase, putative; Provisional	90.07
COG1384	521	LysS Lysyl-tRNA synthetase (class I) [Translation,	89.85
PLN02563	963	aminoacyl-tRNA ligase	88.76
COG0060	933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	88.27
KOG0433|consensus	937		88.14
cd07958	117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	87.54
cd07957	129	Anticodon_Ia_Met Anticodon-binding domain of methi	85.35
PRK00750	510	lysK lysyl-tRNA synthetase; Reviewed	85.26
KOG0437|consensus	1080		84.97
KOG0435|consensus	876		83.17
cd07375	117	Anticodon_Ia_like Anticodon-binding domain of clas	81.57
TIGR00456	566	argS arginyl-tRNA synthetase. This model recognize	81.2
COG0525	877	ValS Valyl-tRNA synthetase [Translation, ribosomal	80.62
KOG0432|consensus	995		80.31

>KOG2007|consensus

Probab=100.00  E-value=7e-101  Score=851.87  Aligned_cols=298  Identities=47%  Similarity=0.758  Sum_probs=257.8

Q ss_pred             hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851         405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA  471 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra  471 (948)
                      +.|+||||+||.|++|+|..|..|+         |.    |||+||+||||||||+|||||+|+|||||||||||||+||
T Consensus        33 ~~L~lYNslTr~Ke~fip~~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDKII~RA  112 (586)
T KOG2007|consen   33 TELKLYNSLTRQKEVFIPNNGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDKIIKRA  112 (586)
T ss_pred             CeEEEeeccccccceeeeCCCCeEEEEEecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchhHHHHHHh
Confidence            4679999999999999999866555         76    9999999999999999999999999999999999999999


Q ss_pred             HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851         472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL  551 (948)
Q Consensus       472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (948)
                      |.+...+     .+                                              +                   
T Consensus       113 r~~~m~e-----~~----------------------------------------------~-------------------  122 (586)
T KOG2007|consen  113 RKEEMGE-----KP----------------------------------------------L-------------------  122 (586)
T ss_pred             hhhhhcc-----ch----------------------------------------------h-------------------
Confidence            9431100     00                                              0                   


Q ss_pred             hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851         552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW  631 (948)
Q Consensus       552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~  631 (948)
                                                                +++                         ..|    .+|
T Consensus       123 ------------------------------------------~l~-------------------------~~F----~~~  131 (586)
T KOG2007|consen  123 ------------------------------------------SLS-------------------------ERF----CYY  131 (586)
T ss_pred             ------------------------------------------hHH-------------------------HHH----HHH
Confidence                                                      000                         012    289


Q ss_pred             HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851         632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK  710 (948)
Q Consensus       632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk  710 (948)
                      |++|+.||++|||+|||++||||||||+||.|||+||+||+ |.++||||||+.+                         
T Consensus       132 e~eF~~DM~~LnvLpPtv~tRVSeyvp~II~fIqkIIdnG~aY~~dGsVYFdv~k-------------------------  186 (586)
T KOG2007|consen  132 EEEFLQDMAALNVLPPTVQTRVSEYVPQIIKFIQKIIDNGYAYAVDGSVYFDVDK-------------------------  186 (586)
T ss_pred             HHHHHHHHHHhCCCCCcccchhhhchHHHHHHHHHHHhCCceeeeCCcEEEeccc-------------------------
Confidence            99999999999999999999999999999999999999999 9999999999998                         


Q ss_pred             cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851         711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS  790 (948)
Q Consensus       711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~  790 (948)
                            ++          +.|+|++... +                               .+.+|+|+++   ++.|||
T Consensus       187 ------f~----------~~YgKL~G~~-~-------------------------------~~~~gEg~l~---ds~KR~  215 (586)
T KOG2007|consen  187 ------FP----------HSYGKLVGQR-K-------------------------------NLQEGEGVLS---DSRKRS  215 (586)
T ss_pred             ------cc----------chhhhhcCch-h-------------------------------hcccCcCccc---cccCCC
Confidence                  54          4799997321 0                               4567778776   689999


Q ss_pred             CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851         791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------  862 (948)
Q Consensus       791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------  862 (948)
                      |+||||||++|+|||+|+||||+|||||||||||||+.+||.+||||+||+||+|||||||||||||++.++        
T Consensus       216 p~DFALWKAsK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~~~~~~wVnYflH  295 (586)
T KOG2007|consen  216 PADFALWKASKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAAFDDSQWVNYFLH  295 (586)
T ss_pred             hhhhhhhhhcCCCCCCCCCCCCCCCCCceeeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHHhcCCccceeEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999998766        


Q ss_pred             -----CCCccccchhhhH------hhhH---H------------------------HHHHHHHHHHHHHHHHHhhccccc
Q psy6851         863 -----QEGKELSKGLAKK------LKKL---Q------------------------LTQEKKYNEYIASVQKATLHGLLV  904 (948)
Q Consensus       863 -----~~g~kmsKsl~n~------l~~~---~------------------------~~~~~~~~~~~~~~~~~~~~~~~~  904 (948)
                           |+|+||||||+||      |++|   |                        +++|+.+++||..|+++++...  
T Consensus       296 tGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~--  373 (586)
T KOG2007|consen  296 TGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAK--  373 (586)
T ss_pred             cCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence                 8999999999999      5555   2                        6999999999999999998843  


Q ss_pred             cccCCCCCCcchhhhhHHHHHH
Q psy6851         905 CFCFQGLPTHDQEGKELSKGLA  926 (948)
Q Consensus       905 ~~~f~kw~~~~~E~~~~~~~~~  926 (948)
                        .|++|+..|   .+|.+.|.
T Consensus       374 --~~~~~~~~e---~~l~~~~~  390 (586)
T KOG2007|consen  374 --PFEKLSEKE---AELLEDFG  390 (586)
T ss_pred             --hhhccChHH---HHHHHhhh
Confidence              378999888   45554444

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-90  Score=775.93  Aligned_cols=248  Identities=41%  Similarity=0.701  Sum_probs=220.0

Q ss_pred             hhhhhhhhcccccccCCCC---------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHH
Q psy6851         406 STEILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRAR  472 (948)
Q Consensus       406 ~LKLyNSldr~ReeflP~~---------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~  472 (948)
                      +|+||||+||.+++|.|..         |++|+|.    |+||||+||+|||+|+ |.||.|+|||||||||||||+||+
T Consensus         1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~-~~Gy~V~yV~NiTDIDDKIi~rA~   79 (464)
T COG0215           1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIINRAR   79 (464)
T ss_pred             CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHH-HhCCeEEEEeccccccHHHHHHHH
Confidence            3689999999999999876         5566666    9999999999999999 889999999999999999999999


Q ss_pred             hcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhh
Q psy6851         473 QNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL  552 (948)
Q Consensus       473 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (948)
                      ++++        .                                                                   
T Consensus        80 ~~g~--------~-------------------------------------------------------------------   84 (464)
T COG0215          80 EEGL--------S-------------------------------------------------------------------   84 (464)
T ss_pred             HhCC--------C-------------------------------------------------------------------
Confidence            9853        0                                                                   


Q ss_pred             hhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHH
Q psy6851         553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWE  632 (948)
Q Consensus       553 ~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~  632 (948)
                                                                                             +.+++++|+
T Consensus        85 -----------------------------------------------------------------------~~ev~~~~i   93 (464)
T COG0215          85 -----------------------------------------------------------------------IREVAERYI   93 (464)
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   014678999


Q ss_pred             HHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851         633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK  710 (948)
Q Consensus       633 ~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk  710 (948)
                      ++|++||++|||++|+++||||+|||+||++|++|+++|| |.+ +|+|||+|++                         
T Consensus        94 ~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~~G~VYFdv~~-------------------------  148 (464)
T COG0215          94 AAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVADDGDVYFDVSK-------------------------  148 (464)
T ss_pred             HHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEecCCcEEEeccc-------------------------
Confidence            9999999999999999999999999999999999999999 997 7999999999                         


Q ss_pred             cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851         711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS  790 (948)
Q Consensus       711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~  790 (948)
                            +.           .|++++....-           +                   .+..|.+   ...+.+|||
T Consensus       149 ------f~-----------~YG~LS~~~~l-----------e-------------------~l~~gar---~~~~~~Krn  178 (464)
T COG0215         149 ------FK-----------DYGKLSGRDSL-----------E-------------------ELQAGAR---VEVDEEKRN  178 (464)
T ss_pred             ------ch-----------hhHhhcCCCCh-----------h-------------------HHhhccc---cccccccCC
Confidence                  64           79999753211           1                   1222222   222467999


Q ss_pred             CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851         791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------  862 (948)
Q Consensus       791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------  862 (948)
                      |.||+|||++|||||+|+||||+||||||||||||+.++||++|||||||+||+|||||||||||||++|..        
T Consensus       179 p~DFvLWK~sk~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea~~g~~~~a~yWmH  258 (464)
T COG0215         179 PLDFVLWKAAKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAATGVKPFAKYWMH  258 (464)
T ss_pred             chhheeeccCCCCCCCCCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccCCCcccHHHHHHhhhCCCcceeEeEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999933        


Q ss_pred             -----CCCccccchhhhH
Q psy6851         863 -----QEGKELSKGLAKK  875 (948)
Q Consensus       863 -----~~g~kmsKsl~n~  875 (948)
                           |+|+|||||||||
T Consensus       259 ~G~l~i~geKMSKSLGNf  276 (464)
T COG0215         259 NGFLNIDGEKMSKSLGNF  276 (464)
T ss_pred             cceeeecCcCcccccCCe
Confidence                 8999999999999

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional

Probab=100.00  E-value=1.5e-81  Score=741.10  Aligned_cols=284  Identities=47%  Similarity=0.775  Sum_probs=244.0

Q ss_pred             hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851         405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA  471 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra  471 (948)
                      +.|+||||+||.+++|+|..|..|.         |.    |+||||+||||||+|+|||||+|+|||||||||||||+||
T Consensus        38 ~~l~lyNtlt~~k~~f~p~~~~~v~~Y~CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A  117 (651)
T PTZ00399         38 TGLKVNNSLTGGKVEFVPQNGRQVRWYTCGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRA  117 (651)
T ss_pred             CceEEEECCCCCccccccCCCCeeEEEEeCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHH
Confidence            4579999999999999998866655         54    9999999999999999999999999999999999999999


Q ss_pred             HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851         472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL  551 (948)
Q Consensus       472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (948)
                      +++++                                                                           
T Consensus       118 ~~~g~---------------------------------------------------------------------------  122 (651)
T PTZ00399        118 REEKL---------------------------------------------------------------------------  122 (651)
T ss_pred             HHhCC---------------------------------------------------------------------------
Confidence            98753                                                                           


Q ss_pred             hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851         552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW  631 (948)
Q Consensus       552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~  631 (948)
                                                                                            +||.+|+++|
T Consensus       123 ----------------------------------------------------------------------~~~~el~~~~  132 (651)
T PTZ00399        123 ----------------------------------------------------------------------SIFLELARKW  132 (651)
T ss_pred             ----------------------------------------------------------------------CcHHHHHHHH
Confidence                                                                                  0233578999


Q ss_pred             HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851         632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK  710 (948)
Q Consensus       632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk  710 (948)
                      +++|++||++|||++|+++||||+|||+||++|++|+++|+ |+.+||||||+++                         
T Consensus       133 ~~~f~~d~~~Lni~~p~~~~r~tehi~~ii~~i~~Li~~G~aY~~~gsvyFd~~~-------------------------  187 (651)
T PTZ00399        133 EKEFFEDMKALNVRPPDVITRVSEYVPEIVDFIQKIIDNGFAYESNGSVYFDVEA-------------------------  187 (651)
T ss_pred             HHHHHHHHHHcCCCCCccccCcCccHHHHHHHHHHHHHCCCEEEECCeEEEEchh-------------------------
Confidence            99999999999999999999999999999999999999999 9999999999999                         


Q ss_pred             cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851         711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS  790 (948)
Q Consensus       711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~  790 (948)
                            +...       .+.|++++|....           +.                 ..+..|+|.++. ..+.|||
T Consensus       188 ------f~~~-------~~~Yg~L~p~~~~-----------~~-----------------~~~~~g~~~l~~-~~~~Kr~  225 (651)
T PTZ00399        188 ------FRKA-------GHVYPKLEPESVA-----------DE-----------------DRIAEGEGALGK-VSGEKRS  225 (651)
T ss_pred             ------cccc-------hhhHHhhChhhcC-----------CH-----------------HHHhcccCCccc-cCcCCCC
Confidence                  5421       1479998765432           11                 023345543321 1247999


Q ss_pred             CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851         791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------  862 (948)
Q Consensus       791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------  862 (948)
                      |.||||||.++||||.|+||||.||||||||||||++++||.+|||||||+||+|||||||||||||++|+.        
T Consensus       226 ~~DFaLWk~~kpgep~W~SpwG~GrPGWHiECsam~~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H  305 (651)
T PTZ00399        226 PNDFALWKASKPGEPSWDSPWGKGRPGWHIECSAMASNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLH  305 (651)
T ss_pred             CccHHhhCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999972        


Q ss_pred             -----CCCccccchhhhH------hhhHH---------------------------HHHHHHHHHHHHHHHHHhhc
Q psy6851         863 -----QEGKELSKGLAKK------LKKLQ---------------------------LTQEKKYNEYIASVQKATLH  900 (948)
Q Consensus       863 -----~~g~kmsKsl~n~------l~~~~---------------------------~~~~~~~~~~~~~~~~~~~~  900 (948)
                           ++|+|||||||||      |++|.                           ...+..|.+||.+|...++.
T Consensus       306 ~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~  381 (651)
T PTZ00399        306 SGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLLFLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRE  381 (651)
T ss_pred             EEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                 8999999999999      34440                           44566799999999877654

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=1.7e-82  Score=684.42  Aligned_cols=229  Identities=46%  Similarity=0.772  Sum_probs=182.6

Q ss_pred             CCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHH
Q psy6851         424 VGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVM  499 (948)
Q Consensus       424 ~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~  499 (948)
                      +|++|+|.    |+||||+||||||+|+ ++||+|+|||||||||||||+||++++.          +            
T Consensus        14 CGPTVYd~~HiGhaR~~v~~D~l~R~L~-~~g~~V~~V~NiTDiDDKii~~A~~~g~----------~------------   70 (300)
T PF01406_consen   14 CGPTVYDYAHIGHARTYVFFDVLRRYLE-YLGYDVTYVMNITDIDDKIIKRAREEGV----------S------------   70 (300)
T ss_dssp             EEEBTTS--BHHHHHHHHHHHHHHHHHH-HTT-EEEEEEEEB-SSHHHHHHHHHTTS-----------------------
T ss_pred             CCCCCCCCCCCcceeeeeeHHHHHHHHH-HcCCeEEEEEeccccchHHHHHHHhccC----------C------------
Confidence            46666666    9999999999999999 7999999999999999999999999742          0            


Q ss_pred             HHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhhhccCCCccccccccCCCCcccccccc
Q psy6851         500 GAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFAT  579 (948)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~  579 (948)
                                                                                                      
T Consensus        71 --------------------------------------------------------------------------------   70 (300)
T PF01406_consen   71 --------------------------------------------------------------------------------   70 (300)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHH
Q psy6851         580 LPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPE  659 (948)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~  659 (948)
                                                                  ..+|+++|+++|++||++|||++|+++||||||||+
T Consensus        71 --------------------------------------------~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~  106 (300)
T PF01406_consen   71 --------------------------------------------PQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPE  106 (300)
T ss_dssp             --------------------------------------------HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHH
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHH
Confidence                                                        014789999999999999999999999999999999


Q ss_pred             HHHHHhCcccCCC-cccC-CcccccCCCCCccccccCCCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCccccc
Q psy6851         660 IVASAQTPKPAAA-KKAE-SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQ  737 (948)
Q Consensus       660 ii~~i~~l~~~g~-Y~~~-gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~  737 (948)
                      ||++|++|+++|+ |+++ ||||||+++                               +.           .|++++..
T Consensus       107 ii~~i~~Li~~G~AY~~~~g~VYFdv~~-------------------------------~~-----------~YG~Ls~~  144 (300)
T PF01406_consen  107 IIELIEKLIDKGHAYESEDGSVYFDVSK-------------------------------FP-----------DYGKLSNQ  144 (300)
T ss_dssp             HHHHHHHHHHTTSEEEETTSEEEE-CCG-------------------------------ST-----------TTTTTTT-
T ss_pred             HHHHHHHHHHCCCeEEcCCCcEEEeecc-------------------------------cc-----------cccccccc
Confidence            9999999999999 9987 999999998                               43           79998764


Q ss_pred             ccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCCCCCcceeeccCCCCCcccCCCCCCCCc
Q psy6851         738 AAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPG  817 (948)
Q Consensus       738 a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPg  817 (948)
                      ...                               .+..+..   ...+++|+||.||||||++++|||+|+||||+||||
T Consensus       145 ~~~-------------------------------~l~~~~~---~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPG  190 (300)
T PF01406_consen  145 DLE-------------------------------DLEAGAR---VEVDYEKRNPRDFALWKAAKPGEPSWDSPWGKGRPG  190 (300)
T ss_dssp             SHH-------------------------------HHHHCHH---HTT-TTSSSTT-EEEEEE--TTS--B--TTSSEEE-
T ss_pred             chh-------------------------------hHHhhhh---cccccccCCCcceeeeecccccCCcccCCCccCcCc
Confidence            321                               1222211   111378999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------------CCCccccchhhhH
Q psy6851         818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------QEGKELSKGLAKK  875 (948)
Q Consensus       818 WHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------~~g~kmsKsl~n~  875 (948)
                      ||||||||+.++||.+|||||||+||+|||||||||||||+++++            ++|+|||||||||
T Consensus       191 WHiECsam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~  260 (300)
T PF01406_consen  191 WHIECSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNF  260 (300)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT--
T ss_pred             eeeehHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCE
Confidence            999999999999999999999999999999999999999999866            8999999999999

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.

>PLN02946 cysteine-tRNA ligase

Probab=100.00  E-value=3.5e-79  Score=706.04  Aligned_cols=249  Identities=38%  Similarity=0.641  Sum_probs=220.5

Q ss_pred             hhhhhhhhhhcccccccCCCCC---------Ceeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHH
Q psy6851         404 IKSTEILNQCDRLRDEVLPNVG---------VRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKR  470 (948)
Q Consensus       404 ~~~LKLyNSldr~ReeflP~~G---------~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~r  470 (948)
                      .+.|+||||+++.+++|.|..+         ++|+|.    |+|+||+||||||+|+ |+||+|+|||||||||||||++
T Consensus        57 ~~~l~lyNTltr~ke~f~P~~~~~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr-~~Gy~V~~V~niTDiDDKIi~~  135 (557)
T PLN02946         57 GRELHLYNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLK-HLGYEVRYVRNFTDVDDKIIAR  135 (557)
T ss_pred             CCceEEEECCCCCeeccccCCCCceeEEEeCCccCCCCccccchhhHHHHHHHHHHH-hcCCcEEEEECCCCccCHHHHH
Confidence            3568999999999999998764         455554    9999999999999998 9999999999999999999999


Q ss_pred             HHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhh
Q psy6851         471 ARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQK  550 (948)
Q Consensus       471 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  550 (948)
                      |++++.          +                                                               
T Consensus       136 A~~~g~----------~---------------------------------------------------------------  142 (557)
T PLN02946        136 ANELGE----------D---------------------------------------------------------------  142 (557)
T ss_pred             HHHcCC----------C---------------------------------------------------------------
Confidence            998742          0                                                               


Q ss_pred             hhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHH
Q psy6851         551 LLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKH  630 (948)
Q Consensus       551 ~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~  630 (948)
                                                                                               ..+|+++
T Consensus       143 -------------------------------------------------------------------------~~ela~~  149 (557)
T PLN02946        143 -------------------------------------------------------------------------PISLSRR  149 (557)
T ss_pred             -------------------------------------------------------------------------HHHHHHH
Confidence                                                                                     0146889


Q ss_pred             HHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhh
Q psy6851         631 WEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK  709 (948)
Q Consensus       631 ~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~ak  709 (948)
                      |+++|++||++|||.+|+++||||+||++||++|++|+++|+ |+.+|+|||||++                        
T Consensus       150 y~~~f~~d~~~LnI~~p~~~pratehi~~ii~~i~~Li~kG~aY~~~g~VYFdv~~------------------------  205 (557)
T PLN02946        150 YCEEFLSDMAYLHCLPPSVEPRVSDHIPQIIDMIKQILDNGCAYRVDGDVYFSVDK------------------------  205 (557)
T ss_pred             HHHHHHHHHHHCCCCCCCeecCcchhHHHHHHHHHHHHHCCCEEEECCeEEEecCc------------------------
Confidence            999999999999999999999999999999999999999999 9999999999998                        


Q ss_pred             hcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCC
Q psy6851         710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR  789 (948)
Q Consensus       710 k~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~  789 (948)
                             +.           .|++++.....                               .+..|..   ++.+.+|+
T Consensus       206 -------f~-----------~YG~Ls~~~l~-------------------------------~l~~g~r---v~~~~~K~  233 (557)
T PLN02946        206 -------FP-----------EYGKLSGRKLE-------------------------------DNRAGER---VAVDSRKK  233 (557)
T ss_pred             -------ch-----------hhhhcCCCChh-------------------------------HhhcCCC---CCcccccC
Confidence                   54           69999753221                               2223322   12245899


Q ss_pred             CCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-------
Q psy6851         790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------  862 (948)
Q Consensus       790 ~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------  862 (948)
                      ||.||||||++|+|||+|+||||+||||||||||||+++|||.+|||||||+||+||||||||||+||++++.       
T Consensus       234 np~DFaLWK~~k~ge~~W~SPWG~GRPGWHIECSaMs~~~lG~~~DIH~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H  313 (557)
T PLN02946        234 NPADFALWKAAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMDLVFPHHENEIAQSCAACCDSNISYWIH  313 (557)
T ss_pred             CccccceeccCCCCCCCccCCCCCCCCcHHHHHHHHHHHHcCCCeeEeccccccCCCcccchHHHHHHHhCCCCCceeeE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999987765       


Q ss_pred             -----CCCccccchhhhH
Q psy6851         863 -----QEGKELSKGLAKK  875 (948)
Q Consensus       863 -----~~g~kmsKsl~n~  875 (948)
                           ++|+|||||+|||
T Consensus       314 ~G~v~~~G~KMSKSlGN~  331 (557)
T PLN02946        314 NGFVTVDSEKMSKSLGNF  331 (557)
T ss_pred             eeEEEeCCCCcCCcCCCc
Confidence                 7999999999999

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.8e-77  Score=670.05  Aligned_cols=317  Identities=24%  Similarity=0.347  Sum_probs=255.6

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCCC--
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPN--  167 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g~--  167 (948)
                      |++.|+++.+++++|+++|.+||.  ||+||+++||||+|||+|| +||++||++||||++ +|+|||||++|++||.  
T Consensus        78 A~~~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI-~~I~~LiekG~AY~~~~G~VYFdv~~f~~YG~LS  156 (464)
T COG0215          78 AREEGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEII-EFIEKLIEKGYAYVADDGDVYFDVSKFKDYGKLS  156 (464)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHH-HHHHHHHHCCceEEecCCcEEEecccchhhHhhc
Confidence            444555666666667778888887  9999999999999999999 799999999999998 7999999999999653  


Q ss_pred             -C--------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccc
Q psy6851         168 -H--------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGI  224 (948)
Q Consensus       168 -~--------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~  224 (948)
                       .              .-.|.+|.||+|||+++||||.|+||||.          |||||||||       ||++ ||||
T Consensus       157 ~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~W~SPWG~----------GRPGWHIECSaM~~~~LG~~~DIHg  226 (464)
T COG0215         157 GRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPSWDSPWGK----------GRPGWHIECSAMSTKYLGETFDIHG  226 (464)
T ss_pred             CCCChhHHhhccccccccccCCchhheeeccCCCCCCCCCCCCCC----------CCCchhHHHHHHHHHHhCCCcceec
Confidence             0              12466789999999999999999999995          999999999       9999 9999


Q ss_pred             ccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCC
Q psy6851         225 CRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKF  276 (948)
Q Consensus       225 GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~  276 (948)
                      ||+||+|||||||                 +|+|||+|+|+|||||||||+||+++          |+++++|||+ ++|
T Consensus       227 GG~DLiFPHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~f  306 (464)
T COG0215         227 GGSDLIFPHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDF  306 (464)
T ss_pred             CcccccCCCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCcccc
Confidence            9999999999997                 78999999999999999999999986          3559999999 999


Q ss_pred             ChhhhH----HHHhhHHHhHHHhH--------HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHH
Q psy6851         277 PATTVS----SFEKWTQADLELST--------RFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRD  344 (948)
Q Consensus       277 s~~~l~----~~~r~~~ad~eL~~--------~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~  344 (948)
                      |++.|+    .++||...-..+..        ...+...+|.+||+||||||.||++|+++++.+|..++.+..  ....
T Consensus       307 see~L~~A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~--~~~~  384 (464)
T COG0215         307 SEELLEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKS--DAKA  384 (464)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhcccc--chHH
Confidence            999886    45666655332211        345677889999999999999999999999999888775533  2234


Q ss_pred             HHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCC
Q psy6851         345 IGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNV  424 (948)
Q Consensus       345 i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~  424 (948)
                      ++..+..++.+||+  ...++ +...+.. .+..    ....|+.|++.|.++|+.       |.|..+|++|+.| ...
T Consensus       385 ~~~~~~~~~~~lg~--~~l~~-~~~~~~~-~~~~----~~~~i~~Li~~R~~aR~~-------K~~~~AD~iRd~L-~~~  448 (464)
T COG0215         385 VLSALKALLAILGL--KVLGL-FPQSGAQ-EDES----DDEEIEALIEERLEARKA-------KNWALADEIRDEL-LAL  448 (464)
T ss_pred             HHHHHHHHHHHhCc--hhhcc-ccccccc-cccc----hHHHHHHHHHHHHHHHHh-------hCHHHHHHHHHHH-HHC
Confidence            55667777777775  11110 1111000 0111    224689999998888887       9999999999997 689


Q ss_pred             CCeeeecCCcceEE
Q psy6851         425 GVRLEDIEGKSYIT  438 (948)
Q Consensus       425 G~~V~D~hARTyVs  438 (948)
                      |+.|+|++.+|.|.
T Consensus       449 Gi~leD~~~gt~w~  462 (464)
T COG0215         449 GIILEDTPDGTTWR  462 (464)
T ss_pred             CcEEEECCCCeEEE
Confidence            99999998777764

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.9e-77  Score=694.60  Aligned_cols=248  Identities=38%  Similarity=0.633  Sum_probs=217.9

Q ss_pred             hhhhhhhhhcccccccCCCC---------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851         405 KSTEILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA  471 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~---------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra  471 (948)
                      ++|+||||++|.+++|.|..         |++|+|.    |+|+||+||||+|+|+ ++||+|+|||||||||||||.+|
T Consensus       226 ~~l~lyNTltr~ke~f~P~~~~~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr-~~Gy~V~fV~NiTD~DDKII~~A  304 (699)
T PRK14535        226 PMTTIYNTLTRQKEPFAPIDPENVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLR-ECGYPLTYVRNITDIDDKIIARA  304 (699)
T ss_pred             CceEEEECCCCCeeccccCCCCceEEEecCCcCCCCCcccchhHHHHHHHHHHHHH-HcCCceEEEeCCcccchHHHHHH
Confidence            56899999999999999876         5555565    9999999999999999 89999999999999999999999


Q ss_pred             HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851         472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL  551 (948)
Q Consensus       472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (948)
                      ++++.          +                                                                
T Consensus       305 ~e~G~----------s----------------------------------------------------------------  310 (699)
T PRK14535        305 AENGE----------T----------------------------------------------------------------  310 (699)
T ss_pred             HHcCC----------C----------------------------------------------------------------
Confidence            98742          0                                                                


Q ss_pred             hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851         552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW  631 (948)
Q Consensus       552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~  631 (948)
                                                                                              ..+++++|
T Consensus       311 ------------------------------------------------------------------------p~ela~~y  318 (699)
T PRK14535        311 ------------------------------------------------------------------------IGELTARF  318 (699)
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    01367899


Q ss_pred             HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhh
Q psy6851         632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK  709 (948)
Q Consensus       632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~ak  709 (948)
                      +++|++||.+|||.+|++.||||+||++||++|++|+++|+ |+. +|+|||||++                        
T Consensus       319 ~~~F~~d~~~LnI~~p~~~praTeHI~~ii~lI~~LidkG~AYe~~~gsVYFdV~~------------------------  374 (699)
T PRK14535        319 IQAMHEDADALGVLRPDIEPKATENIPQMIAMIETLIQNGKAYPAANGDVYYAVRE------------------------  374 (699)
T ss_pred             HHHHHHHHHHcCCCCCcEeeCccchHHHHHHHHHHHHHCCCEEEeCCCCEEEeccc------------------------
Confidence            99999999999999999999999999999999999999999 975 7899999998                        


Q ss_pred             hcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCC
Q psy6851         710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR  789 (948)
Q Consensus       710 k~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~  789 (948)
                             +.           .|++++....            +                   .+..|++   ++.+..||
T Consensus       375 -------f~-----------~YG~LS~~~~------------~-------------------~l~~g~r---ve~d~~Kr  402 (699)
T PRK14535        375 -------FA-----------AYGQLSGKSL------------D-------------------DLRAGER---VEVDGFKR  402 (699)
T ss_pred             -------cc-----------ccccccCCCh------------H-------------------HhcCCCc---cccccccC
Confidence                   54           6999875311            1                   1222322   11235699


Q ss_pred             CCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC--------
Q psy6851         790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH--------  861 (948)
Q Consensus       790 ~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~--------  861 (948)
                      ||.||||||++++|||.|+||||+|||||||||||||.++||.+|||||||+||+|||||||||||||++|+        
T Consensus       403 np~DFaLWK~sk~Gep~W~SPWG~GRPGWHIECSAMs~~~LG~~~DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~  482 (699)
T PRK14535        403 DPLDFVLWKAAKAGEPAWESPWGNGRPGWHIECSAMSENLFGDTFDIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQ  482 (699)
T ss_pred             CccccceeccCCCCCCCccCCCCCCCCchHHHHHHHHHHHcCCcceeECCccccCCCCCccHHHHHHHhhCCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998775        


Q ss_pred             --------C------------CCCccccchhhhH
Q psy6851         862 --------D------------QEGKELSKGLAKK  875 (948)
Q Consensus       862 --------~------------~~g~kmsKsl~n~  875 (948)
                              +            ++|+|||||+|||
T Consensus       483 ~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~  516 (699)
T PRK14535        483 THHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNF  516 (699)
T ss_pred             ccccccccccccEEEECCeEeeCCCccCCCCCCc
Confidence                    1            8999999999999

>KOG2007|consensus

Probab=100.00  E-value=1e-75  Score=651.28  Aligned_cols=318  Identities=39%  Similarity=0.591  Sum_probs=271.3

Q ss_pred             hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCC-CCC----
Q psy6851          95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDS-QPN----  167 (948)
Q Consensus        95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~-~g~----  167 (948)
                      +.+.++.+.|..+.+.|.+||.  ||+||||+||||||||+|| .||++||+|||||+++|||||||.+|+. ||.    
T Consensus       119 e~~~~l~~~F~~~e~eF~~DM~~LnvLpPtv~tRVSeyvp~II-~fIqkIIdnG~aY~~dGsVYFdv~kf~~~YgKL~G~  197 (586)
T KOG2007|consen  119 EKPLSLSERFCYYEEEFLQDMAALNVLPPTVQTRVSEYVPQII-KFIQKIIDNGYAYAVDGSVYFDVDKFPHSYGKLVGQ  197 (586)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhCCCCCcccchhhhchHHHH-HHHHHHHhCCceeeeCCcEEEecccccchhhhhcCc
Confidence            3456677777778899999998  9999999999999999999 7999999999999999999999999993 321    


Q ss_pred             -----------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccccccc
Q psy6851         168 -----------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQD  228 (948)
Q Consensus       168 -----------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~D  228 (948)
                                 ..-+|.+|.||||||++|+|||.|+||||.          |||||||||       ||.+ |||+||+|
T Consensus       198 ~~~~~~gEg~l~ds~KR~p~DFALWKAsK~gEP~WeSPWG~----------GRPGWHIECSaMas~~lG~~lDIH~GG~D  267 (586)
T KOG2007|consen  198 RKNLQEGEGVLSDSRKRSPADFALWKASKPGEPSWESPWGK----------GRPGWHIECSAMASAILGSQLDIHGGGID  267 (586)
T ss_pred             hhhcccCcCccccccCCChhhhhhhhhcCCCCCCCCCCCCC----------CCCCceeeeHHHHHHhhccccceecCccc
Confidence                       013445578999999999999999999995          999999999       8999 99999999


Q ss_pred             ccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHHHhh-cCCChhh
Q psy6851         229 ELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDHIRN-LKFPATT  280 (948)
Q Consensus       229 L~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~hyR~-l~~s~~~  280 (948)
                      |.|||||||                 .|+|||+|.|+||||||+|||||++++          ++|..+||+ |+|++..
T Consensus       268 L~FPHHeNEiAQ~eA~~~~~~wVnYflHtGhL~i~g~KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~  347 (586)
T KOG2007|consen  268 LAFPHHENEIAQSEAAFDDSQWVNYFLHTGHLTINGEKMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDST  347 (586)
T ss_pred             ccCCCcccHHHHHHHHhcCCccceeEEEcCeeeeccchhhhhhccceeHHHHHHhcCHHHHHHHHHHHHhcCcCCchHHH
Confidence            999999997                 689999999999999999999999863          458999999 9999874


Q ss_pred             hH-------HH-----------------HhhHHHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         281 VS-------SF-----------------EKWTQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       281 l~-------~~-----------------~r~~~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                      +.       .+                 +.|...+.++...+..++.+|+.||||||+||.++.++.+|++.+|.||...
T Consensus       348 m~~a~q~e~~~~~ff~~~~al~~~~~~~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~  427 (586)
T KOG2007|consen  348 MEQALQLEKSLNNFFLDVKALLRGAKPFEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRES  427 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhccChHHHHHHHhhhhHHHHHHHHHHhccccHHHHHHHHHHHhhhhHHHHHh
Confidence            32       11                 1223345566777888999999999999999999999999999999998753


Q ss_pred             ---CCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Q psy6851         337 ---PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQC  413 (948)
Q Consensus       337 ---~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSl  413 (948)
                         +...++..|..||+.++.|||+.....        .   ....+..++|+|+.|++||..+|+.|+....-.+...|
T Consensus       428 ~~~~~~~~L~~I~~yIt~~l~ifG~~e~~g--------~---q~~~e~~~m~~v~~L~~fr~~vRe~a~~~~~~~iL~l~  496 (586)
T KOG2007|consen  428 GERPNSALLKAIASYITKLLKIFGLSEGKG--------Q---QYVLEATVMPYVQSLSEFREKVREVAREKKVPEILELC  496 (586)
T ss_pred             ccccchHHHHHHHHHHHHHHHHhCCCcccc--------c---ccccccchhHHHHHHHHHHHHHHHHHHhcchHHHHHHh
Confidence               556789999999999999999975111        0   11124456789999999999999999977666899999


Q ss_pred             cccccccCCCCCCeeeecCCc
Q psy6851         414 DRLRDEVLPNVGVRLEDIEGK  434 (948)
Q Consensus       414 dr~ReeflP~~G~~V~D~hAR  434 (948)
                      |.+|+..++..|+.++|.+..
T Consensus       497 d~lR~~~l~~~g~~led~~g~  517 (586)
T KOG2007|consen  497 DTLRDSDLLELGVRLEDRKGS  517 (586)
T ss_pred             HHHHHhhHHHhhhHHHhCCch
Confidence            999999889999999988743

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=100.00  E-value=6.9e-76  Score=659.03  Aligned_cols=251  Identities=30%  Similarity=0.512  Sum_probs=216.9

Q ss_pred             hhhhhhhhhhcccccccCCCC-------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHH
Q psy6851         404 IKSTEILNQCDRLRDEVLPNV-------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRAR  472 (948)
Q Consensus       404 ~~~LKLyNSldr~ReeflP~~-------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~  472 (948)
                      .+.|+||||++|.+++|.|..       |.+|+|.    |+|+||.+|||+|+|+ +.||+|+|||||||||||||++|+
T Consensus        15 ~~~l~lyntlt~~~~~f~p~~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr-~~G~~V~fV~nitD~dDKIi~~A~   93 (411)
T TIGR03447        15 GPPLRLFDTADGQVRPVEPGPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWR-DAGHRVHYVQNVTDVDDPLFERAE   93 (411)
T ss_pred             CCceEEEECCCCCeeeccCCCcceEEEeCCccCCCcccccchHHHHHHHHHHHHH-hcCCceEEeeCCCchhHHHHHHHH
Confidence            456899999999999999821       4444454    9999999999999999 789999999999999999999999


Q ss_pred             hcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhh
Q psy6851         473 QNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL  552 (948)
Q Consensus       473 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (948)
                      +++.          +                                                                 
T Consensus        94 ~~g~----------t-----------------------------------------------------------------   98 (411)
T TIGR03447        94 RDGV----------D-----------------------------------------------------------------   98 (411)
T ss_pred             HcCC----------C-----------------------------------------------------------------
Confidence            8742          0                                                                 


Q ss_pred             hhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHH
Q psy6851         553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWE  632 (948)
Q Consensus       553 ~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~  632 (948)
                                                                                             ..+++++|+
T Consensus        99 -----------------------------------------------------------------------~~ela~~y~  107 (411)
T TIGR03447        99 -----------------------------------------------------------------------WRELGTSQI  107 (411)
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   013678999


Q ss_pred             HHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCC----cccccCCCCCccccccCCCCCcccccchhh
Q psy6851         633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAES----SSDDDSSSEDEKPAVKAPAKPVAHAAEPAA  707 (948)
Q Consensus       633 ~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~g----svyfdvssede~pa~k~~~k~~~~~~~~~~  707 (948)
                      ++|++||++|||.+|+.+||||+||++|+++|++|+++|+ |+.+|    |||||+++                      
T Consensus       108 ~~f~~d~~~Lni~~~d~~~RaTe~i~~ii~~i~~L~~kG~aY~~~~~~~~~VYFdv~~----------------------  165 (411)
T TIGR03447       108 DLFREDMEALRVLPPRDYIGAVESIDEVIEMVEKLLAAGAAYEVEGPEYPDVYFSIEA----------------------  165 (411)
T ss_pred             HHHHHHHHHcCCCCCCcccCCCCCHHHHHHHHHHHHHCCCEEecCCCCcCcEEEeccc----------------------
Confidence            9999999999999999999999999999999999999999 98876    89999999                      


Q ss_pred             hhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhcc--CCCCCCcccc
Q psy6851         708 AKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA--KPGDLSSQEA  785 (948)
Q Consensus       708 akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~--~~~~~~~~~~  785 (948)
                               +.           .|++++.....                               .+..  +...... .+
T Consensus       166 ---------~~-----------~YG~Ls~~~~~-------------------------------~~~~~~~~~~~~~-~~  193 (411)
T TIGR03447       166 ---------TE-----------QFGYESGYDRA-------------------------------TMLELFAERGGDP-DR  193 (411)
T ss_pred             ---------hh-----------ccccccCCCHH-------------------------------HHHhhhcccccCc-cc
Confidence                     54           68998642111                               1111  1110111 13


Q ss_pred             ccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC-C--
Q psy6851         786 SEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH-D--  862 (948)
Q Consensus       786 ~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~-~--  862 (948)
                      ++|+||.||||||++++|||+|+||||+||||||||||||+.++||.+|||||||+||+||||||||||++|++++ +  
T Consensus       194 ~~K~~p~DFaLWK~~~~~e~~w~spwG~GRPGWHiECsam~~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~  273 (411)
T TIGR03447       194 PGKRDPLDALLWRAAREGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMA  273 (411)
T ss_pred             ccCCCCcccceeCCCCCCCCCccCCCCCCCChhHHHHHHHHHHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999999987 3  


Q ss_pred             ----------CCCccccchhhhH
Q psy6851         863 ----------QEGKELSKGLAKK  875 (948)
Q Consensus       863 ----------~~g~kmsKsl~n~  875 (948)
                                ++|+|||||||||
T Consensus       274 ~~w~H~g~l~~~G~KMSKSlGN~  296 (411)
T TIGR03447       274 RHYVHAGMIGLDGEKMSKSLGNL  296 (411)
T ss_pred             eEEEECCEECcCCCCccCcCCCC
Confidence                      8999999999999

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=7.5e-75  Score=663.57  Aligned_cols=247  Identities=32%  Similarity=0.530  Sum_probs=216.0

Q ss_pred             hhhhhhhhcccccccCCCC---------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccc---------
Q psy6851         406 STEILNQCDRLRDEVLPNV---------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDI---------  463 (948)
Q Consensus       406 ~LKLyNSldr~ReeflP~~---------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi---------  463 (948)
                      +|+||||+++.+++|.|..         |++|+|.    |+|+||+||||+|+|+ |+||+|+||||||||         
T Consensus         2 ~l~lyntlt~~ke~f~p~~~~~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De   80 (490)
T PRK14536          2 ALRLYNTLGRQQEEFQPIEHGHVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADS   80 (490)
T ss_pred             ceEEEecCCCCeeccccCCCCceEEEeeCCccCCCcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcC
Confidence            4799999999999999876         4455555    9999999999999998 999999999999999         


Q ss_pred             -hHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCcccc
Q psy6851         464 -DDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINN  542 (948)
Q Consensus       464 -DDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  542 (948)
                       |||||++|++++.          +                                                       
T Consensus        81 ~ddKii~~A~~~g~----------~-------------------------------------------------------   95 (490)
T PRK14536         81 GEDKMVKSAQEHGK----------S-------------------------------------------------------   95 (490)
T ss_pred             CChHHHHHHHHcCC----------C-------------------------------------------------------
Confidence             9999999987642          0                                                       


Q ss_pred             ccchhhhhhhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccc
Q psy6851         543 IKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNS  622 (948)
Q Consensus       543 ~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~  622 (948)
                                                                                                      
T Consensus        96 --------------------------------------------------------------------------------   95 (490)
T PRK14536         96 --------------------------------------------------------------------------------   95 (490)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccc
Q psy6851         623 IFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAH  701 (948)
Q Consensus       623 ~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~  701 (948)
                       ..+++++|+++|++||++|||.+|+++||||+||++|+++|++|+++|+ |+.+||||||+++                
T Consensus        96 -~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii~~i~~L~~kG~aY~~~~~vyFdv~~----------------  158 (490)
T PRK14536         96 -VLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMIALIKRLEARGHTYCAGGNVYFDIRT----------------  158 (490)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHHHHHHHHHHCCCEEEECCeEEEeCCc----------------
Confidence             0146789999999999999999999999999999999999999999999 9999999999988                


Q ss_pred             ccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851         702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS  781 (948)
Q Consensus       702 ~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~  781 (948)
                                     +.           .|++++.....                               .+..|.. + 
T Consensus       159 ---------------~~-----------~YG~Ls~~~~~-------------------------------~l~~g~~-v-  179 (490)
T PRK14536        159 ---------------FP-----------SYGSLASAAVE-------------------------------DLQAGAR-I-  179 (490)
T ss_pred             ---------------cc-----------chhhhcCCCHH-------------------------------HhhcCCc-C-
Confidence                           53           69988643211                               1222221 1 


Q ss_pred             ccccccCCCCCCcceeeccC--CC-CCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhcc
Q psy6851         782 SQEASEKRSPNDFALWKKSK--AG-EPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGL  858 (948)
Q Consensus       782 ~~~~~~K~~~~DfaLwk~~k--~~-ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~  858 (948)
                       +.+..|+||.||||||+++  ++ +|.|+||||+||||||||||||+.+|||.+|||||||+||+|||||||||||||+
T Consensus       180 -~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~GRPGWHIECsaMs~~~lg~~~DIH~GG~DliFPHHeneiAqs~a~  258 (490)
T PRK14536        180 -EHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGRGYPGWHIECSAMSMKYLGEQCDIHIGGVDHIRVHHTNEIAQCEAA  258 (490)
T ss_pred             -CCCCCCCCchhchhcccccCCCCCCCcccCCCCCCCCChHHHHHHHHHHHcCCceeEEeccccCCCcchhhHHHHHHHh
Confidence             1245899999999999865  44 6899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC------------CCCccccchhhhH
Q psy6851         859 PTHD------------QEGKELSKGLAKK  875 (948)
Q Consensus       859 ~~~~------------~~g~kmsKsl~n~  875 (948)
                      +|++            ++|+|||||+|||
T Consensus       259 ~g~~~~~~w~h~g~l~~~g~KMSKSlGN~  287 (490)
T PRK14536        259 TGKPWVRYWLHHEFLLMNKGKMSKSAGQF  287 (490)
T ss_pred             cCCCcceEEEEcCEEeecCccccccCCCc
Confidence            8876            8999999999999

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=3e-73  Score=648.15  Aligned_cols=248  Identities=30%  Similarity=0.439  Sum_probs=217.9

Q ss_pred             hhhhhhhhhcccccccCCCC-------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccc----------
Q psy6851         405 KSTEILNQCDRLRDEVLPNV-------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDI----------  463 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~-------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi----------  463 (948)
                      ++|+||||++|.+++|.|..       |++|+|.    |+|+||+||||+|+|+ +.||+|+||||||||          
T Consensus         1 ~~l~lynTltr~ke~f~p~~~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~-~~G~~V~~v~NiTDIghltg~~D~g   79 (481)
T PRK14534          1 MLLKLYNTKTKDLSELKNFSDVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLR-LLKYNVNYAMNITDIGHLTGDFDDG   79 (481)
T ss_pred             CceEEEEcCCCCeeecccCCceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHH-HcCCceEEEEeccccccccCCccCC
Confidence            35799999999999998863       7777776    9999999999999999 899999999999999          


Q ss_pred             hHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccc
Q psy6851         464 DDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNI  543 (948)
Q Consensus       464 DDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (948)
                      |||||++|++++.          +                                                        
T Consensus        80 ddKIi~~A~~~g~----------~--------------------------------------------------------   93 (481)
T PRK14534         80 EDKVVKAARERGL----------T--------------------------------------------------------   93 (481)
T ss_pred             CcHHHHHHHHcCC----------C--------------------------------------------------------
Confidence            9999999998752          0                                                        


Q ss_pred             cchhhhhhhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCcccccc
Q psy6851         544 KNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSI  623 (948)
Q Consensus       544 ~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~  623 (948)
                                                                                                      
T Consensus        94 --------------------------------------------------------------------------------   93 (481)
T PRK14534         94 --------------------------------------------------------------------------------   93 (481)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccc
Q psy6851         624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHA  702 (948)
Q Consensus       624 f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~  702 (948)
                      ..+++++|++.|++||++|||.+|+++||||+||++||++|++|+++|+ |+.+|+||||+++                 
T Consensus        94 ~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i~~i~~L~~kG~aY~~~~~vyFdv~~-----------------  156 (481)
T PRK14534         94 VYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMIEVVKVLEENGFTYFVNGNVYFDTSC-----------------  156 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHHHHHHHHHHCCCEEEECCeEEEeccc-----------------
Confidence            0136789999999999999999999999999999999999999999999 9999999999998                 


Q ss_pred             cchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhc--cCCCCC
Q psy6851         703 AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA--AKPGDL  780 (948)
Q Consensus       703 ~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~--~~~~~~  780 (948)
                                    +.           .|++++.....                               .+.  .+.+  
T Consensus       157 --------------~~-----------~YG~ls~~~l~-------------------------------~l~~~~~~~--  178 (481)
T PRK14534        157 --------------FK-----------SYGQMAGINLN-------------------------------DFKDMSVSR--  178 (481)
T ss_pred             --------------cc-----------chhhhcCCCHH-------------------------------HHhhhccCc--
Confidence                          53           68888642110                               111  1211  


Q ss_pred             CccccccCCCCCCcceeecc---CCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhc
Q psy6851         781 SSQEASEKRSPNDFALWKKS---KAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEG  857 (948)
Q Consensus       781 ~~~~~~~K~~~~DfaLwk~~---k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~  857 (948)
                       ...+..|+||.||+|||.+   ++++|.|+||||.||||||||||||+.++||.+|||||||+||+|||||||+|||+|
T Consensus       179 -v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~GrPgWHiECsam~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a  257 (481)
T PRK14534        179 -VEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKSTLDIHLGGVDHIGVHHINEIAIAEC  257 (481)
T ss_pred             -CCcccCCCCcccchhcCcCCcCCCCCCeecCCCCCcCCcHHHHHHHHHHHHcCCcceEEecccccCCCcchhHHHHHhh
Confidence             1123579999999999975   899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC------------CCCccccchhhhH
Q psy6851         858 LPTHD------------QEGKELSKGLAKK  875 (948)
Q Consensus       858 ~~~~~------------~~g~kmsKsl~n~  875 (948)
                      ++|.+            ++|+|||||+|||
T Consensus       258 ~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~  287 (481)
T PRK14534        258 YLNKKWCDMFVHGEFLIMEYEKMSKSNNNF  287 (481)
T ss_pred             hcCCCcceEEEEecEEEecCceecccCCCc
Confidence            98766            8999999999999

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=9.8e-73  Score=630.34  Aligned_cols=231  Identities=31%  Similarity=0.545  Sum_probs=201.7

Q ss_pred             CCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHH
Q psy6851         424 VGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVM  499 (948)
Q Consensus       424 ~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~  499 (948)
                      .|++|+|.    |+|+||+||||+|+|+ +.||+|.|||||||||||||++|++++.          +            
T Consensus        15 CGpTvY~~~HIGh~r~~V~~Dvl~R~lr-~~G~~V~~V~nitD~ddKIi~~A~~~G~----------~------------   71 (384)
T PRK12418         15 CGITPYDATHLGHAATYLAFDLVNRVWR-DAGHDVHYVQNVTDVDDPLLERAARDGV----------D------------   71 (384)
T ss_pred             cCCCCCCCCccchhHHHHHHHHHHHHHH-HcCCceEEEEecCCcchHHHHHHHHcCC----------C------------
Confidence            57788866    9999999999999999 8999999999999999999999998753          0            


Q ss_pred             HHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhhhccCCCccccccccCCCCcccccccc
Q psy6851         500 GAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFAT  579 (948)
Q Consensus       500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~  579 (948)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (384)
T PRK12418         72 --------------------------------------------------------------------------------   71 (384)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHH
Q psy6851         580 LPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPE  659 (948)
Q Consensus       580 ~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~  659 (948)
                                                                  ..+++++|+++|++||++|||++|+.+||||+||++
T Consensus        72 --------------------------------------------~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~  107 (384)
T PRK12418         72 --------------------------------------------WRDLAEREIALFREDMEALRVLPPRDYVGAVESIPE  107 (384)
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHH
Confidence                                                        013678999999999999999999999999999999


Q ss_pred             HHHHHhCcccCCC-cccCC----cccccCCCCCccccccCCCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcc
Q psy6851         660 IVASAQTPKPAAA-KKAES----SSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKP  734 (948)
Q Consensus       660 ii~~i~~l~~~g~-Y~~~g----svyfdvssede~pa~k~~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~  734 (948)
                      |+++|++|+++|+ |+.++    |||||+++                               +.           .|+++
T Consensus       108 ~~~~i~~L~~kG~aY~~~~~~~~~VYFdv~~-------------------------------~~-----------~YG~l  145 (384)
T PRK12418        108 VVELVEKLLASGAAYVVDDEEYPDVYFSVDA-------------------------------TP-----------QFGYE  145 (384)
T ss_pred             HHHHHHHHHHCCCEEEeCCCCCccEEEecCc-------------------------------hh-----------hcccc
Confidence            9999999999999 98877    99999998                               43           68888


Q ss_pred             cccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhcc--CCCCCCccccccCCCCCCcceeeccCCCCCcccCCCC
Q psy6851         735 VAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAA--KPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWG  812 (948)
Q Consensus       735 ~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~--~~~~~~~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg  812 (948)
                      +.....                               .+..  +...... .+++||||.||||||++++|||.|+||||
T Consensus       146 s~~~~~-------------------------------~~~~~~~~~~~~~-~~~~K~~p~DFaLWK~~~~~~~~w~spwG  193 (384)
T PRK12418        146 SGYDRA-------------------------------TMLELFAERGGDP-DRPGKRDPLDALLWRAARPGEPSWPSPFG  193 (384)
T ss_pred             cCCCHH-------------------------------HHHhhhcccccCc-ccccCCCcccceeeccCCCCCCcccCCCC
Confidence            642110                               1111  1110011 13579999999999999999999999999


Q ss_pred             CCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC-C------------CCCccccchhhhH
Q psy6851         813 EGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH-D------------QEGKELSKGLAKK  875 (948)
Q Consensus       813 ~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~-~------------~~g~kmsKsl~n~  875 (948)
                      +|||||||||||||.++||.+||||+||+||+||||||||||++|++++ +            ++|+|||||||||
T Consensus       194 ~GRPGWHiECsam~~~~lg~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~  269 (384)
T PRK12418        194 PGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNL  269 (384)
T ss_pred             CCCChhHHHHHHHHHHHcCCCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCc
Confidence            9999999999999999999999999999999999999999999999987 3            8999999999999

>PLN02946 cysteine-tRNA ligase

Probab=100.00  E-value=4.8e-68  Score=613.57  Aligned_cols=329  Identities=21%  Similarity=0.277  Sum_probs=260.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCC
Q psy6851          89 QEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQP  166 (948)
Q Consensus        89 ~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g  166 (948)
                      -...|.+.|+++.++++++++.|.++|.  ||.+|+++||||+||++|| +||++|++|||||+.+|+|||||++|++||
T Consensus       132 Ii~~A~~~g~~~~ela~~y~~~f~~d~~~LnI~~p~~~pratehi~~ii-~~i~~Li~kG~aY~~~g~VYFdv~~f~~YG  210 (557)
T PLN02946        132 IIARANELGEDPISLSRRYCEEFLSDMAYLHCLPPSVEPRVSDHIPQII-DMIKQILDNGCAYRVDGDVYFSVDKFPEYG  210 (557)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHCCCCCCCeecCcchhHHHHH-HHHHHHHHCCCEEEECCeEEEecCcchhhh
Confidence            3455667788888888888889999988  9999999999999999999 799999999999999999999999999986


Q ss_pred             C----------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cc
Q psy6851         167 N----------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ET  222 (948)
Q Consensus       167 ~----------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-di  222 (948)
                      .                .+-.|.+|.||+|||++++|||.|+||||.          |||||||||       ||.+ ||
T Consensus       211 ~Ls~~~l~~l~~g~rv~~~~~K~np~DFaLWK~~k~ge~~W~SPWG~----------GRPGWHIECSaMs~~~lG~~~DI  280 (557)
T PLN02946        211 KLSGRKLEDNRAGERVAVDSRKKNPADFALWKAAKEGEPFWDSPWGP----------GRPGWHIECSAMSAAYLGHSFDI  280 (557)
T ss_pred             hcCCCChhHhhcCCCCCcccccCCccccceeccCCCCCCCccCCCCC----------CCCcHHHHHHHHHHHHcCCCeeE
Confidence            4                123678899999999999999999999995          999999999       9998 99


Q ss_pred             ccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHHHhh-cC
Q psy6851         223 GICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDHIRN-LK  275 (948)
Q Consensus       223 h~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~hyR~-l~  275 (948)
                      |+||+||+|||||||                +|+|+|+++|+|||||+||++++++++          .++++|||+ ++
T Consensus       281 H~GG~DL~FPHHENEiAQsea~~g~~~a~yW~H~G~v~~~G~KMSKSlGN~itl~dll~~y~~dalR~~lLs~hyr~~l~  360 (557)
T PLN02946        281 HGGGMDLVFPHHENEIAQSCAACCDSNISYWIHNGFVTVDSEKMSKSLGNFFTIRQVIDLYHPLALRLFLLGTHYRSPIN  360 (557)
T ss_pred             eccccccCCCcccchHHHHHHHhCCCCCceeeEeeEEEeCCCCcCCcCCCcCCHHHHHHhcCccceeeeeeccCCCCCcE
Confidence            999999999999997                688999999999999999999999873          347899999 99


Q ss_pred             CChhhhH----HHHhhHHHhH--------------------HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q psy6851         276 FPATTVS----SFEKWTQADL--------------------ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI  331 (948)
Q Consensus       276 ~s~~~l~----~~~r~~~ad~--------------------eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~  331 (948)
                      |+++.|.    .+.++...-.                    .+...+..+.+.|.+||+||||||.||++||++++.+|.
T Consensus       361 fs~e~L~~a~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlntp~Al~~l~~~vk~~N~  440 (557)
T PLN02946        361 YSDVQLESASERIFYIYQTLHDCEESLQQHDSTFEKDSVPPDTLNCINKFHDEFVTSMSDDLHTPVALAALSEPLKTIND  440 (557)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            9998765    2222221100                    011234457789999999999999999999999999999


Q ss_pred             hhcCCC------CHHHHHHHHHHHHHHHhHcccccccccCCCCCC--CCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhh
Q psy6851         332 YLRGTP------NQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLG--GTGVESTNLEELVLPYLTILSEFRDNIRTEARL  403 (948)
Q Consensus       332 yLd~~~------~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~--~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~  403 (948)
                      +++...      ....+..+..++..|++||||....... +...  ........+.+   ..|+.|++.|.++|+.   
T Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vLGl~~~~~~~-~~~~~~~~~~~~~~~~~---~~i~~li~~R~~aR~~---  513 (557)
T PLN02946        441 LLHTRKGKKQEKRLESLAALEKKIRDVLSVLGLMPTSYSE-ALQQLREKALRRAKLTE---EQVLQKIEERTVARKN---  513 (557)
T ss_pred             HhhhcccccccchHHHHHHHHHHHHHHHHHcCCCchhhhh-hhhhhhhhhhhcccCCH---HHHHHHHHHHHHHHhc---
Confidence            886431      1123555677899999999995421000 0000  00000000110   1267788876666666   


Q ss_pred             hhhhhhhhhhcccccccCCCCCCeeeecCCcceEEeh
Q psy6851         404 IKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYITFD  440 (948)
Q Consensus       404 ~~~LKLyNSldr~ReeflP~~G~~V~D~hARTyVsfD  440 (948)
                          |.|..+|++|+++ ...|+.|+|+..+|.|..-
T Consensus       514 ----Kdf~~AD~IR~~L-~~~Gi~l~Dt~~Gt~w~~~  545 (557)
T PLN02946        514 ----KEYEKSDAIRKDL-AAVGIALMDSPDGTTWRPA  545 (557)
T ss_pred             ----cCHHHHHHHHHHH-HHCCCEEEECCCCceEEEc
Confidence                9999999999998 6889999999777877643

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=100.00  E-value=2.3e-68  Score=610.10  Aligned_cols=246  Identities=41%  Similarity=0.652  Sum_probs=216.2

Q ss_pred             hhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHh
Q psy6851         407 TEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ  473 (948)
Q Consensus       407 LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~  473 (948)
                      |+||||++|.+++|.|..+.+|.         +.    |+|+||++||++|+|+ +.||+|+|||||||||||||.+|++
T Consensus         1 l~lyntlt~~~e~f~p~~~~~v~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr-~~G~~V~~v~n~tD~ddkIi~~A~~   79 (465)
T TIGR00435         1 LKLYNTLTRQKEEFEPLVQGKVKMYVCGPTVYDYCHIGHARTAIVFDVLRRYLR-YLGYKVQYVQNITDIDDKIIKRARE   79 (465)
T ss_pred             CeeEeCCCCCeeccccCCCCcceEEEecCccCCCcccccchHHHHHHHHHHHHH-HcCCcEEEEEeeCCccHHHHHHHHH
Confidence            57999999999999987755444         43    9999999999999999 8999999999999999999999998


Q ss_pred             cchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhh
Q psy6851         474 NYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLT  553 (948)
Q Consensus       474 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (948)
                      +++       .+                                                                    
T Consensus        80 ~g~-------~~--------------------------------------------------------------------   84 (465)
T TIGR00435        80 NGE-------SV--------------------------------------------------------------------   84 (465)
T ss_pred             cCC-------CH--------------------------------------------------------------------
Confidence            753       00                                                                    


Q ss_pred             hccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHH
Q psy6851         554 AVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEA  633 (948)
Q Consensus       554 a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~  633 (948)
                                                                                             .+++++|.+
T Consensus        85 -----------------------------------------------------------------------~e~a~~~~~   93 (465)
T TIGR00435        85 -----------------------------------------------------------------------YEVSERFIE   93 (465)
T ss_pred             -----------------------------------------------------------------------HHHHHHHHH
Confidence                                                                                   135789999


Q ss_pred             HHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccC-CcccccCCCCCccccccCCCCCcccccchhhhhhc
Q psy6851         634 EFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAE-SSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA  711 (948)
Q Consensus       634 ~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~-gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk~  711 (948)
                      .|++||++|||.+|+.++|+|+|++.|+++|++|+++|+ |..+ |+||||+++                          
T Consensus        94 ~f~~dl~~LgI~~d~~~~raT~hi~~i~~~i~~L~ekG~aY~~~~g~vyfdv~~--------------------------  147 (465)
T TIGR00435        94 AYFEDMKALNVLPPDLEPRATEHIDEIIEFIEQLIEKGYAYVSDNGDVYFDVSK--------------------------  147 (465)
T ss_pred             HHHHHHHHhCCCCCcCCccccccHHHHHHHHHHHHHCCCEEEecCCcEEEeccc--------------------------
Confidence            999999999999999999999999999999999999999 9988 999999988                          


Q ss_pred             CCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCCC
Q psy6851         712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP  791 (948)
Q Consensus       712 eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~~  791 (948)
                           +.           .|++++.....                               .+..|.+.   ..+..|+||
T Consensus       148 -----~~-----------~yG~ls~~~~~-------------------------------~~~~~~~~---~~~~~K~~p  177 (465)
T TIGR00435       148 -----FK-----------DYGKLSKQDLD-------------------------------QLEAGARV---DVDEAKRNK  177 (465)
T ss_pred             -----cc-----------hhccCCCCCHH-------------------------------HHhccccc---CcccccCCC
Confidence                 43           68998642110                               12223221   113569999


Q ss_pred             CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC---------
Q psy6851         792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD---------  862 (948)
Q Consensus       792 ~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~---------  862 (948)
                      .||||||++++|||.|+||||.||||||||||||+.++||.++|||+||+||+||||+||+|||+|++|.+         
T Consensus       178 ~DF~Lwk~~~~~~~~w~spwG~grpgWhiecsam~~~~lg~~~Dih~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g  257 (465)
T TIGR00435       178 LDFVLWKSSKEGEPKWDSPWGKGRPGWHIECSAMNDKYLGDQIDIHGGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNG  257 (465)
T ss_pred             CCceeeCCCCCCCCCCcCCCCCCCCCcHhHHHHHHHHhcCCCceeeccccccccchHHHHHHHHHHhcCCCCCcEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999998865         


Q ss_pred             ---CCCccccchhhhH
Q psy6851         863 ---QEGKELSKGLAKK  875 (948)
Q Consensus       863 ---~~g~kmsKsl~n~  875 (948)
                         ++|+|||||+|||
T Consensus       258 ~v~~~g~KMSKS~GN~  273 (465)
T TIGR00435       258 FLMIDNEKMSKSLGNF  273 (465)
T ss_pred             EEEecCccccccCCCc
Confidence               7999999999999

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=100.00  E-value=2.5e-68  Score=609.70  Aligned_cols=248  Identities=42%  Similarity=0.706  Sum_probs=217.6

Q ss_pred             hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851         405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA  471 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra  471 (948)
                      ++|+||||+++.+++|.|..+..|.         +.    |+|+||.+|||+|+|+ +.||+|.|||||||||||||++|
T Consensus         1 ~~l~~~ntl~~~~~~f~p~~~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr-~~G~~V~~v~~~tD~ddki~~~A   79 (463)
T PRK00260          1 MMLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLR-YLGYKVTYVRNITDIDDKIIKRA   79 (463)
T ss_pred             CceEEEECCCCceeecccCCCCcceEEEeCCccCCCcccccchhHHHHHHHHHHHH-hcCCceEEeecCCCCcHHHHHHH
Confidence            4689999999999999987654443         33    9999999999999999 99999999999999999999999


Q ss_pred             HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851         472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL  551 (948)
Q Consensus       472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (948)
                      ++.+.          .                                                                
T Consensus        80 ~~~g~----------~----------------------------------------------------------------   85 (463)
T PRK00260         80 NEEGE----------S----------------------------------------------------------------   85 (463)
T ss_pred             HHcCC----------C----------------------------------------------------------------
Confidence            87631          0                                                                


Q ss_pred             hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851         552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW  631 (948)
Q Consensus       552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~  631 (948)
                                                                                              ..+++++|
T Consensus        86 ------------------------------------------------------------------------~~e~~~~~   93 (463)
T PRK00260         86 ------------------------------------------------------------------------IKELTERY   93 (463)
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    01467899


Q ss_pred             HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851         632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK  710 (948)
Q Consensus       632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk  710 (948)
                      +++|.+||++|||.+|+.++|+|+|+++|+++|++|+++|+ |..+|+||||+++                         
T Consensus        94 ~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~~~i~~L~~kG~aY~~~~~Vyfdv~~-------------------------  148 (463)
T PRK00260         94 IAAFHEDMDALNVLPPDIEPRATEHIPEIIELIERLIDKGHAYEADGDVYFDVRK-------------------------  148 (463)
T ss_pred             HHHHHHHHHHcCCCCCCccccccccHHHHHHHHHHHHHCCCEEEecCeEEEeccc-------------------------
Confidence            99999999999999999999999999999999999999999 9999999999998                         


Q ss_pred             cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851         711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS  790 (948)
Q Consensus       711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~  790 (948)
                            +.           .|++++.....                               .+..|..   ...+..|+|
T Consensus       149 ------~~-----------~yg~ls~~~~~-------------------------------~~~~~~~---~~~~~~K~~  177 (463)
T PRK00260        149 ------FP-----------DYGKLSGRNLD-------------------------------ELQAGAR---VEVAEEKRD  177 (463)
T ss_pred             ------cc-----------ccccCCCCCHH-------------------------------HHhccCc---CCcccCCCC
Confidence                  53           69998753211                               1222211   112457999


Q ss_pred             CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851         791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------  862 (948)
Q Consensus       791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------  862 (948)
                      |.||||||++++|+|.|+||||+||||||||||||+.++||.+||||+||+||+||||+||||||+|++|.+        
T Consensus       178 ~~DF~Lwk~~~~~~~~w~s~~g~grpgWhiecsam~~~~lg~~~Dih~gG~DlifpHh~neiaqs~a~~g~p~~~~w~H~  257 (463)
T PRK00260        178 PLDFALWKAAKPGEPSWESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADLIFPHHENEIAQSEAATGKPFANYWMHN  257 (463)
T ss_pred             ccccceecCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhcCCCcceecCccccCCCchHhHHHHHHHhcCCCcceEEEEc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998854        


Q ss_pred             ----CCCccccchhhhH
Q psy6851         863 ----QEGKELSKGLAKK  875 (948)
Q Consensus       863 ----~~g~kmsKsl~n~  875 (948)
                          ++|+|||||+||+
T Consensus       258 g~v~~~G~KMSKS~GN~  274 (463)
T PRK00260        258 GFVTVNGEKMSKSLGNF  274 (463)
T ss_pred             cEEccCCCcccCcCCCC
Confidence                8999999999998

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional

Probab=100.00  E-value=6.5e-67  Score=617.05  Aligned_cols=332  Identities=35%  Similarity=0.538  Sum_probs=268.7

Q ss_pred             HHHHHhcCCC-hHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCC
Q psy6851          90 EAKEAQKKIP-PSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQP  166 (948)
Q Consensus        90 ~~~a~e~g~~-~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g  166 (948)
                      +..|.+.|++ +.++++++++.|.+||.  ||++|+++||||+|||+|| +||++||+|||||+++|||||||++|++. 
T Consensus       114 i~~A~~~g~~~~~el~~~~~~~f~~d~~~Lni~~p~~~~r~tehi~~ii-~~i~~Li~~G~aY~~~gsvyFd~~~f~~~-  191 (651)
T PTZ00399        114 IKRAREEKLSIFLELARKWEKEFFEDMKALNVRPPDVITRVSEYVPEIV-DFIQKIIDNGFAYESNGSVYFDVEAFRKA-  191 (651)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCcCccHHHHH-HHHHHHHHCCCEEEECCeEEEEchhcccc-
Confidence            4445666777 77777778888988888  9999999999999999999 79999999999999999999999999832 


Q ss_pred             CCC--------------------------ccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----
Q psy6851         167 NHY--------------------------YAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF----  216 (948)
Q Consensus       167 ~~~--------------------------YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc----  216 (948)
                      +|.                          +.|.+|.||+|||.++||||.|+||||.          |||||||||    
T Consensus       192 ~~~Yg~L~p~~~~~~~~~~~g~~~l~~~~~~Kr~~~DFaLWk~~kpgep~W~SpwG~----------GrPGWHiECsam~  261 (651)
T PTZ00399        192 GHVYPKLEPESVADEDRIAEGEGALGKVSGEKRSPNDFALWKASKPGEPSWDSPWGK----------GRPGWHIECSAMA  261 (651)
T ss_pred             hhhHHhhChhhcCCHHHHhcccCCccccCcCCCCCccHHhhCCCCCCCCCCCCCCCC----------CCCCchHHHHHHH
Confidence            222                          3455678999999999999999999995          999999999    


Q ss_pred             ---eccC-ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH----------HH
Q psy6851         217 ---YGTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FL  265 (948)
Q Consensus       217 ---LG~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l  265 (948)
                         ||.+ |||+||+||+|||||||                 +|+|||+++|+||||||||||++.++          |.
T Consensus       262 ~~~lg~~~DIh~gG~DL~FPHHeNEiAQseA~~~~~~~v~y~~H~G~L~i~G~KMSKSLGNfItp~dlLekygaDaLR~~  341 (651)
T PTZ00399        262 SNILGDPIDIHSGGIDLKFPHHDNELAQSEAYFDKHQWVNYFLHSGHLHIKGLKMSKSLKNFITIRQALSKYTARQIRLL  341 (651)
T ss_pred             HHHcCCcceeeccCCCCCCCcchhHHHHHHHhhCCCCCCcEEEEEEEEEeccchhhhcCCCcccHHHHHHHcChHHHHHH
Confidence               8998 99999999999999997                 57899999999999999999999875          23


Q ss_pred             HHHHHHhh-cCCChhhhHHH-----------HhhH---------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHH
Q psy6851         266 NVKDHIRN-LKFPATTVSSF-----------EKWT---------------QADLELSTRFIQTKNNVHAALCDNMDTRSA  318 (948)
Q Consensus       266 ~ls~hyR~-l~~s~~~l~~~-----------~r~~---------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~A  318 (948)
                      +|+.|||+ ++|+++.+...           .++.               ..+..+...+..+...|.+||+||||||.|
T Consensus       342 lLs~~~~~dldFS~e~l~~a~~~~~~l~n~~~rl~s~l~~~~~~~~~~~~~~d~~Ll~~l~~~~~~v~~Am~Ddfnt~~A  421 (651)
T PTZ00399        342 FLLHKWDKPMNYSDESMDEAIEKDKVFFNFFANVKIKLRESELTSPQKWTQHDFELNELFEETKSAVHAALLDNFDTPEA  421 (651)
T ss_pred             HHhcCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            36789999 99998865411           1111               112223445667889999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHH
Q psy6851         319 LDSIRDCISQVNIYLRGT--PNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDN  396 (948)
Q Consensus       319 LaaLfeLVraiN~yLd~~--~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~  396 (948)
                      ++.|++|++.+|.|++..  .+..++..+..+|+.|+.||||......+||....      ...+.+.++|+.|+++|++
T Consensus       422 l~~L~eLv~~~N~yi~~~~~~~~~ll~~v~~~l~~~l~ILGl~~~~~m~~~~~~~------~~~~~~~~~i~~l~~~R~~  495 (651)
T PTZ00399        422 LQALQKLISATNTYLNSGEQPSAPLLRSVAQYVTKILSIFGLVEGSDGLGSQGQN------STSENFKPLLEALLRFRDE  495 (651)
T ss_pred             HHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHhcccCCcchhhccccccc------cchhhhHHHHHHHHHHHHH
Confidence            999999999999999632  34456778899999999999996544444442211      1122335789999999999


Q ss_pred             HHHHHhh--------hhhhhhhhhhcccccccCCCCCCeeeecCCc-ceEEe
Q psy6851         397 IRTEARL--------IKSTEILNQCDRLRDEVLPNVGVRLEDIEGK-SYITF  439 (948)
Q Consensus       397 iR~~AR~--------~~~LKLyNSldr~ReeflP~~G~~V~D~hAR-TyVsf  439 (948)
                      +|+.|+.        ....++|..||++|++-++..|+.|+|...+ |.|.+
T Consensus       496 ~R~~a~~~~~~~~~~~~~~~~~~~~D~iRd~~L~~~Gi~l~D~~~g~~~~~~  547 (651)
T PTZ00399        496 VRDAAKAEMKLISLDKKKKQLLQLCDKLRDEWLPNLGIRIEDKPDGPSVWKL  547 (651)
T ss_pred             HHHHHHhccccccchhhhhhHHHHHHHHHHHHHHHCCCEEEEcCCCceEEEE
Confidence            9988776        3345899999999995338999999999655 45544

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2e-65  Score=595.88  Aligned_cols=318  Identities=23%  Similarity=0.298  Sum_probs=252.3

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCC
Q psy6851          88 AQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDS  164 (948)
Q Consensus        88 ~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~  164 (948)
                      +-...|.+.|+++.++++++++.|.++|.  ||.+|+++||||+||++|| +||++|+++||||+. +|||||||++|++
T Consensus       299 KII~~A~e~G~sp~ela~~y~~~F~~d~~~LnI~~p~~~praTeHI~~ii-~lI~~LidkG~AYe~~~gsVYFdV~~f~~  377 (699)
T PRK14535        299 KIIARAAENGETIGELTARFIQAMHEDADALGVLRPDIEPKATENIPQMI-AMIETLIQNGKAYPAANGDVYYAVREFAA  377 (699)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcEeeCccchHHHHH-HHHHHHHHCCCEEEeCCCCEEEecccccc
Confidence            34555667788888888888889998888  9999999999999999999 799999999999986 7899999999999


Q ss_pred             CCC----------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-
Q psy6851         165 QPN----------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-  220 (948)
Q Consensus       165 ~g~----------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-  220 (948)
                      ||.                ..-+|.+|.||+|||++++|||.|+||||.          |||||||||       ||.+ 
T Consensus       378 YG~LS~~~~~~l~~g~rve~d~~Krnp~DFaLWK~sk~Gep~W~SPWG~----------GRPGWHIECSAMs~~~LG~~~  447 (699)
T PRK14535        378 YGQLSGKSLDDLRAGERVEVDGFKRDPLDFVLWKAAKAGEPAWESPWGN----------GRPGWHIECSAMSENLFGDTF  447 (699)
T ss_pred             cccccCCChHHhcCCCccccccccCCccccceeccCCCCCCCccCCCCC----------CCCchHHHHHHHHHHHcCCcc
Confidence            874                112488899999999999999999999995          999999999       9998 


Q ss_pred             ccccccccccCCccccc--------------------------------cccccEEEcccchhhcchhHHHHHHH-----
Q psy6851         221 ETGICRQDELFPYTEFK--------------------------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----  263 (948)
Q Consensus       221 dih~GG~DL~FPHHEne--------------------------------~h~G~l~i~geKMSKSLGN~vti~ef-----  263 (948)
                      |||+||+||+|||||||                                +|+|+|+++|+|||||+||+++++++     
T Consensus       448 DIHgGG~DLiFPHHENEiAQseA~~g~~~~~~~~~~~~~~~~~~~aryWmHnG~V~vdGeKMSKSLGN~it~~dlLe~yg  527 (699)
T PRK14535        448 DIHGGGADLQFPHHENEIAQSVGATGHTCGHHHAQTHHGQSIASHVKYWLHNGFIRVDGEKMSKSLGNFFTIREVLKQYD  527 (699)
T ss_pred             eeECCccccCCCCCccHHHHHHHhhCCCcccccccccccccccccccEEEECCeEeeCCCccCCCCCCcCCHHHHHHhCC
Confidence            99999999999999986                                23467788899999999999999875     


Q ss_pred             -----HHHHHHHHhh-cCCChhhhH----HHHhhHHHhHHH-------hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy6851         264 -----FLNVKDHIRN-LKFPATTVS----SFEKWTQADLEL-------STRFIQTKNNVHAALCDNMDTRSALDSIRDCI  326 (948)
Q Consensus       264 -----~l~ls~hyR~-l~~s~~~l~----~~~r~~~ad~eL-------~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV  326 (948)
                           |.++++|||+ ++|+++.+.    .++|+...-..+       ...+..+.+.|.+||+||||||.||++||+++
T Consensus       528 pdalRl~lLsshYRspL~fS~e~Le~Ak~~l~Rl~~~l~~~~~~~~~~~~~l~~~~~~f~~AL~DDlntp~Ala~L~~lv  607 (699)
T PRK14535        528 PEVVRFFILRAHYRSPLNYSDAHLDDAKGALTRLYTTLKNTPAAEFMLSENVNDYTRRFYAAMNDDFGTVEAVAVLFELA  607 (699)
T ss_pred             HHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence                 3447899999 999998876    344554432221       12345678899999999999999999999999


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6851         327 SQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKS  406 (948)
Q Consensus       327 raiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~  406 (948)
                      +.+|..+.        ..+...+..++.||||....... |...+.  .......   ..|+.|++.|.++|+.      
T Consensus       608 k~iN~~~~--------~~~~~~l~~~~~vLGl~~~~~~~-~~~~~~--~~~~~~~---~~i~~Li~~R~~AR~~------  667 (699)
T PRK14535        608 GEVNKTND--------AQLAGCLKALGGIIGLLQRDPTE-FLQGGA--ASDGLSN---EEIEDLIARRKQARAD------  667 (699)
T ss_pred             HHHHHHHH--------HHHHHHHHHHHhhcCCCccchhh-hhhccc--ccccCCH---HHHHHHHHHHHHHHHh------
Confidence            99998631        12344567788999995322111 111000  0001111   1377888887777766      


Q ss_pred             hhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851         407 TEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT  438 (948)
Q Consensus       407 LKLyNSldr~ReeflP~~G~~V~D~hARTyVs  438 (948)
                       |.|..+|++|+++ ...|+.|+|+..+|.|.
T Consensus       668 -Kdfa~AD~IRd~L-~~~GI~veDt~~Gt~W~  697 (699)
T PRK14535        668 -KNWAESDRIRDLL-NEHKIILEDNAGGTTWR  697 (699)
T ss_pred             -CCHHHHHHHHHHH-HHCCCEEEEcCCCceEe
Confidence             9999999999998 68999999997777764

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=5e-63  Score=566.35  Aligned_cols=311  Identities=18%  Similarity=0.212  Sum_probs=245.3

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN---  167 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~---  167 (948)
                      |++.|+++.++++++++.|.++|.  ||.+|+++||||+||++|| +||++|+++||||+++|||||||.+|++||.   
T Consensus        89 A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~rat~hi~~ii-~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~Ls~  167 (490)
T PRK14536         89 AQEHGKSVLEIAAHYTAAFFRDTARLNIERPSIVCNATEHIQDMI-ALIKRLEARGHTYCAGGNVYFDIRTFPSYGSLAS  167 (490)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCcccHHHHHH-HHHHHHHHCCCEEEECCeEEEeCCcccchhhhcC
Confidence            345577777777777778888887  9999999999999999999 7999999999999999999999999999864   


Q ss_pred             -------------CCccccCCcccccccccc--CC-CCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccc
Q psy6851         168 -------------HYYAKLVPEAYGDTKTLQ--EG-EVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETG  223 (948)
Q Consensus       168 -------------~~YgKL~P~DFaLWK~ak--~g-Ep~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih  223 (948)
                                   ...+|.+|.||+|||..+  ++ +|.|+||||.          |||||||||       ||.+ |||
T Consensus       168 ~~~~~l~~g~~v~~~~~K~np~DFaLWK~~~~~~~~~~~W~SpWG~----------GRPGWHIECsaMs~~~lg~~~DIH  237 (490)
T PRK14536        168 AAVEDLQAGARIEHDTNKRNPHDFVLWFTRSKFENHALTWDSPWGR----------GYPGWHIECSAMSMKYLGEQCDIH  237 (490)
T ss_pred             CCHHHhhcCCcCCCCCCCCCchhchhcccccCCCCCCCcccCCCCC----------CCCChHHHHHHHHHHHcCCceeEE
Confidence                         124678899999999875  44 5789999995          999999999       8998 999


Q ss_pred             cccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cC
Q psy6851         224 ICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LK  275 (948)
Q Consensus       224 ~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~  275 (948)
                      +||.||+|||||||                +|+|+|+++|+|||||+||+++++++           |.++++|||+ ++
T Consensus       238 ~GG~DliFPHHeneiAqs~a~~g~~~~~~w~h~g~l~~~g~KMSKSlGN~itl~dll~~g~~~~alR~~lls~~yr~~l~  317 (490)
T PRK14536        238 IGGVDHIRVHHTNEIAQCEAATGKPWVRYWLHHEFLLMNKGKMSKSAGQFLTLSSLQEKGFQPLDYRFFLLGGHYRSQLA  317 (490)
T ss_pred             eccccCCCcchhhHHHHHHHhcCCCcceEEEEcCEEeecCccccccCCCcccHHHHHhcCCCHHHHHHHHHhCCCCCCCC
Confidence            99999999999997                68899999999999999999999875           3458999999 99


Q ss_pred             CChhhhH----HHHhhHHHhHH---------------------------HhHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q psy6851         276 FPATTVS----SFEKWTQADLE---------------------------LSTRFIQTKNNVHAALCDNMDTRSALDSIRD  324 (948)
Q Consensus       276 ~s~~~l~----~~~r~~~ad~e---------------------------L~~~l~el~e~F~aAL~DDFNTP~ALaaLfe  324 (948)
                      |+++.+.    .+.|+...-..                           +...+..+.++|.+||+||||||.||++||+
T Consensus       318 Fs~e~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlntp~Al~~l~~  397 (490)
T PRK14536        318 FSWEALKTAKAARRSLVRRVARVVDAARATTGSVRGTLAECAAERVAESRASESELLLTDFRAALEDDFSTPKALSELQK  397 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccchhhhhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            9998765    33443332111                           1122345778999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHccccc-ccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhh
Q psy6851         325 CISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIG-DVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARL  403 (948)
Q Consensus       325 LVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~-~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~  403 (948)
                      +++.+|..         ...+...++.++.||||.. ...........  ..... .+    .|+.|++.|.++|+.   
T Consensus       398 ~~~~~n~~---------~~~~~~~~~~~~~vLGl~~~~~~~~~~~~~~--~~~~~-~~----~i~~li~~R~~aR~~---  458 (490)
T PRK14536        398 LVKDTSVP---------PSLCLSVLQAMDTVLGLGLIQEATASLSAQV--PAGPS-EE----EIGQLIEARAHARQT---  458 (490)
T ss_pred             HHHHhhhh---------HHHHHHHHHHHHhhcCcccccchhhhhhhcc--cccCC-HH----HHHHHHHHHHHHHHh---
Confidence            99999962         1235667888999999952 11000000000  00000 11    277888877777766   


Q ss_pred             hhhhhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851         404 IKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT  438 (948)
Q Consensus       404 ~~~LKLyNSldr~ReeflP~~G~~V~D~hARTyVs  438 (948)
                          |.|..+|++|+.+ ...|+.|+|+..+|.|.
T Consensus       459 ----kdf~~AD~iR~~L-~~~Gi~l~Dt~~Gt~w~  488 (490)
T PRK14536        459 ----KDFPLADEIRDKL-KAEGIELEDTHLGTIWK  488 (490)
T ss_pred             ----CCHHHHHHHHHHH-HHCCCEEEEcCCCceEE
Confidence                9999999999998 67899999997667663

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2.1e-62  Score=559.29  Aligned_cols=313  Identities=16%  Similarity=0.219  Sum_probs=246.1

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC
Q psy6851          90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN  167 (948)
Q Consensus        90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~  167 (948)
                      +..|++.|+++.++++++++.|.++|.  ||.+|+++||||+||++|| +||++|+++||||+++|+|||||.+|++||.
T Consensus        84 i~~A~~~g~~~~e~a~~~~~~f~~d~~~Lni~~~~~~p~atehi~~~i-~~i~~L~~kG~aY~~~~~vyFdv~~~~~YG~  162 (481)
T PRK14534         84 VKAARERGLTVYEISRFFTEAFFDDCKKLNIVYPDKVLVASEYIPIMI-EVVKVLEENGFTYFVNGNVYFDTSCFKSYGQ  162 (481)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCceecCccchHHHHH-HHHHHHHHCCCEEEECCeEEEecccccchhh
Confidence            334556677777777788888888888  9999999999999999999 7999999999999999999999999999864


Q ss_pred             ------------------CCccccCCccccccccc---cCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------ecc
Q psy6851         168 ------------------HYYAKLVPEAYGDTKTL---QEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGT  219 (948)
Q Consensus       168 ------------------~~YgKL~P~DFaLWK~a---k~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~  219 (948)
                                        .+-.|.+|.||+|||..   ++++|.|+||||.          |||||||||       ||.
T Consensus       163 ls~~~l~~l~~~~~~~v~~~~~K~np~DFaLWK~~~~~~~~~~~w~spWG~----------GrPgWHiECsam~~~~lg~  232 (481)
T PRK14534        163 MAGINLNDFKDMSVSRVEIDKSKRNKSDFVLWFTNSKFKDQEMKWDSPWGF----------GYPSWHLECAAMNLEYFKS  232 (481)
T ss_pred             hcCCCHHHHhhhccCcCCcccCCCCcccchhcCcCCcCCCCCCeecCCCCC----------cCCcHHHHHHHHHHHHcCC
Confidence                              01357789999999975   8999999999995          999999999       899


Q ss_pred             C-ccccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851         220 R-ETGICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI  271 (948)
Q Consensus       220 ~-dih~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy  271 (948)
                      + |||+||.||+|||||||                +|+|+|+++|+|||||+||+++++++           |.++++||
T Consensus       233 ~~DIH~GG~DliFPHHene~Aqs~a~~g~~~~~~W~H~g~l~~~g~KMSKSlGN~i~l~dll~~~~~~~alR~~lls~~y  312 (481)
T PRK14534        233 TLDIHLGGVDHIGVHHINEIAIAECYLNKKWCDMFVHGEFLIMEYEKMSKSNNNFITIKDLEDQGFSPLDFRYFCLTAHY  312 (481)
T ss_pred             cceEEecccccCCCcchhHHHHHhhhcCCCcceEEEEecEEEecCceecccCCCcccHHHHHhcCCChhHHHHHHHhCCC
Confidence            8 99999999999999997                68899999999999999999999876           34589999


Q ss_pred             hh-cCCChhhhH----HHHhhHHHhHHH------------h--------HHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy6851         272 RN-LKFPATTVS----SFEKWTQADLEL------------S--------TRFIQTKNNVHAALCDNMDTRSALDSIRDCI  326 (948)
Q Consensus       272 R~-l~~s~~~l~----~~~r~~~ad~eL------------~--------~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV  326 (948)
                      |+ ++|+.+.|.    +++|+...-..+            .        .....+.+.|.+||+||||||.|+++||+++
T Consensus       313 r~~l~Fs~e~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~Al~DDlNtp~Al~~l~~~~  392 (481)
T PRK14534        313 RTQLKFTFNNLKACKIARENMLNKLTYFYSSLDQFDLNLLNKDLENIEFSLEKEYYDSFLEKIAFDLNIPQGLALLWDII  392 (481)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccchhhhHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            99 999998875    344444321110            0        1123466899999999999999999999999


Q ss_pred             HHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6851         327 SQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKS  406 (948)
Q Consensus       327 raiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~  406 (948)
                      +.+|...   .  ... .+...+..++. ||+...... ..  ..   .....++    .|+.|++.|.++|+.      
T Consensus       393 k~~n~~~---~--~~~-~~~~~~~~~~~-lg~~~~~~~-~~--~~---~~~~~~~----~i~~li~~R~~aR~~------  449 (481)
T PRK14534        393 KDDNLSF---L--SKL-RLAFKFDEVLS-LGLREEILR-EI--EN---HRIVIDD----NMKSLIEERRLAKCE------  449 (481)
T ss_pred             HHHHHhh---h--hHH-HHHHHHHHHHh-CCCCcccch-hh--cc---ccccCHH----HHHHHHHHHHHHHHh------
Confidence            9999751   1  111 13344566666 887321100 00  00   0000111    377888887777766      


Q ss_pred             hhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851         407 TEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT  438 (948)
Q Consensus       407 LKLyNSldr~ReeflP~~G~~V~D~hARTyVs  438 (948)
                       |.|..+|++|+++ ...|+.|+|+..+|.|.
T Consensus       450 -Kd~~~AD~iR~~L-~~~Gi~l~Dt~~Gt~w~  479 (481)
T PRK14534        450 -KDFKRADEIREYF-ASKGFVLIDTEEGTKVK  479 (481)
T ss_pred             -CChHHHHHHHHHH-HHCCCEEEEcCCCCEEE
Confidence             9999999999998 67899999997777764

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated

Probab=100.00  E-value=7.6e-61  Score=548.15  Aligned_cols=317  Identities=25%  Similarity=0.355  Sum_probs=255.7

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN---  167 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~---  167 (948)
                      |.+.|+++.+++..+++.|.++|.  ||.+|+++||+|+|+++|+ +||++|+++|+||+.+|+|||||++|++||.   
T Consensus        79 A~~~g~~~~e~~~~~~~~f~~~~~~Lgi~~~d~~~r~t~~~~~~~-~~i~~L~~kG~aY~~~~~Vyfdv~~~~~yg~ls~  157 (463)
T PRK00260         79 ANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPEII-ELIERLIDKGHAYEADGDVYFDVRKFPDYGKLSG  157 (463)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCccccccccHHHHH-HHHHHHHHCCCEEEecCeEEEecccccccccCCC
Confidence            344566666666666667777776  9999999999999999999 7999999999999999999999999999874   


Q ss_pred             -------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccccc
Q psy6851         168 -------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICR  226 (948)
Q Consensus       168 -------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG  226 (948)
                                   ...+|.+|.||+|||++++|||.|+||||.          |||||||||       ||.+ |||+||
T Consensus       158 ~~~~~~~~~~~~~~~~~K~~~~DF~Lwk~~~~~~~~w~s~~g~----------grpgWhiecsam~~~~lg~~~Dih~gG  227 (463)
T PRK00260        158 RNLDELQAGARVEVAEEKRDPLDFALWKAAKPGEPSWESPWGK----------GRPGWHIECSAMSTKYLGETFDIHGGG  227 (463)
T ss_pred             CCHHHHhccCcCCcccCCCCccccceecCCCCCCCCCCCCCCC----------CCCChhHHHHHHHHHhcCCCcceecCc
Confidence                         124588899999999999999999999995          999999999       8998 999999


Q ss_pred             ccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChh
Q psy6851         227 QDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPAT  279 (948)
Q Consensus       227 ~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~  279 (948)
                      .||+|||||||                +|+|+|.++|+|||||+||++++.++          |.++++|||+ ++|+.+
T Consensus       228 ~DlifpHh~neiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKS~GN~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~  307 (463)
T PRK00260        228 ADLIFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEE  307 (463)
T ss_pred             cccCCCchHhHHHHHHHhcCCCcceEEEEccEEccCCCcccCcCCCCCCHHHHHHHcCchHhHHHHHhCCCCCCCccCHH
Confidence            99999999986                57788999999999999999999875          3447899999 999998


Q ss_pred             hhH----HHHhhHHHh---------HHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHH
Q psy6851         280 TVS----SFEKWTQAD---------LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIG  346 (948)
Q Consensus       280 ~l~----~~~r~~~ad---------~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~  346 (948)
                      .+.    .+.|+...-         ..+...+..+.++|.+||+||||||.|+++|+++++.+|.+++.. +...+..+.
T Consensus       308 ~l~~a~~~~~rl~~~~~~~~~~~~d~~~~~~l~~~~~~~~~al~ddln~~~Al~~l~~lv~~~n~~~~~~-~~~~~~~~~  386 (463)
T PRK00260        308 ALEQAKKALERLYNALAETALGEDDEALLAELEEFKERFIEAMDDDFNTPEALAVLFELAREINRALETK-DKEAAAALA  386 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHH
Confidence            765    234443321         223345567889999999999999999999999999999999765 344567788


Q ss_pred             HHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCC
Q psy6851         347 AYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGV  426 (948)
Q Consensus       347 ~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~  426 (948)
                      .++..|+.||||....... +....    ....+    ..++.|++.|.++|+.       |.|..+|++|++| ...|+
T Consensus       387 ~~~~~~~~ilG~~~~~~~~-~~~~~----~~~~~----~~~~~li~~R~~aR~~-------Kdf~~AD~IRd~L-~~~Gi  449 (463)
T PRK00260        387 ALLRALADVLGLEQDEEAL-FEAAA----DELLD----AEIEALIEERQEARKA-------KDFALADAIRDEL-AALGI  449 (463)
T ss_pred             HHHHHHHHhcCCCchhhhh-hhccc----ccccH----HHHHHHHHHHHHHHHc-------cCHHHHHHHHHHH-HHCCc
Confidence            8999999999994321110 00000    00111    2377788877766665       8999999999997 78999


Q ss_pred             eeeecCCcceEE
Q psy6851         427 RLEDIEGKSYIT  438 (948)
Q Consensus       427 ~V~D~hARTyVs  438 (948)
                      .|+|+..+|.|.
T Consensus       450 ~v~D~~~G~~w~  461 (463)
T PRK00260        450 VLEDTPDGTTWR  461 (463)
T ss_pred             EEEEcCCCceEE
Confidence            999996666664

>PRK12418 cysteinyl-tRNA synthetase; Provisional

Probab=100.00  E-value=2e-61  Score=539.63  Aligned_cols=252  Identities=22%  Similarity=0.271  Sum_probs=210.5

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCC----cEEEeeccCCC
Q psy6851          91 AKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNG----SVYFNVNAFDS  164 (948)
Q Consensus        91 ~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~G----sVYFDv~~f~~  164 (948)
                      ..|++.|++++++++++++.|.++|.  ||++|+++||||+||++|| +||++|+++||||+++|    ||||||++|++
T Consensus        63 ~~A~~~G~~~~e~a~~~~~~f~~d~~~Lni~~~~~~~raTe~i~~~~-~~i~~L~~kG~aY~~~~~~~~~VYFdv~~~~~  141 (384)
T PRK12418         63 ERAARDGVDWRDLAEREIALFREDMEALRVLPPRDYVGAVESIPEVV-ELVEKLLASGAAYVVDDEEYPDVYFSVDATPQ  141 (384)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCCHHHHH-HHHHHHHHCCCEEEeCCCCCccEEEecCchhh
Confidence            34455677777777777777877777  9999999999999999999 79999999999999877    99999999999


Q ss_pred             CCC--------------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------e
Q psy6851         165 QPN--------------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------Y  217 (948)
Q Consensus       165 ~g~--------------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------L  217 (948)
                      ||.                    +.|.|.+|.||+|||++++|||.|+||||.          |||||||||       |
T Consensus       142 YG~ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~~~~w~spwG~----------GRPGWHiECsam~~~~l  211 (384)
T PRK12418        142 FGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAARPGEPSWPSPFGP----------GRPGWHIECSAIALNRL  211 (384)
T ss_pred             cccccCCCHHHHHhhhcccccCcccccCCCcccceeeccCCCCCCcccCCCCC----------CCChhHHHHHHHHHHHc
Confidence            973                    147899999999999999999999999995          999999999       8


Q ss_pred             ccC-ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHHH-----------HHHH
Q psy6851         218 GTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF-----------LNVK  268 (948)
Q Consensus       218 G~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef~-----------l~ls  268 (948)
                      |.+ |||+||+||+|||||||                 +|+|+|.++|+|||||+||++++.+++           ++++
T Consensus       212 g~~~DIH~GG~DL~FPHHeneiaq~~a~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~ell~~G~d~~~lR~~lls  291 (384)
T PRK12418        212 GSGFDIQGGGSDLIFPHHEFSAAHAEAATGERRFARHYVHAGMIGLDGEKMSKSRGNLVFVSRLRAAGVDPAAIRLALLA  291 (384)
T ss_pred             CCCcccccCccccccchhHhHHHHHHHhcCCCCcceEEEECCEECCCCCcccCcCCCcCCHHHHHhccCChhheeEEEec
Confidence            998 99999999999999997                 577888999999999999999998863           2368


Q ss_pred             HHHhh-cCCChhhhH----HHHhhHHHhHHH-hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHH
Q psy6851         269 DHIRN-LKFPATTVS----SFEKWTQADLEL-STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLL  342 (948)
Q Consensus       269 ~hyR~-l~~s~~~l~----~~~r~~~ad~eL-~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL  342 (948)
                      +|||+ ++|+++.|.    .++||...-..+ ...+.++.+.|.+||+||||||.|+++|+++++.+|.|+......   
T Consensus       292 ~~yr~~l~fs~e~l~~a~~~l~r~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~~~~~---  368 (384)
T PRK12418        292 GHYRADREWTDAVLAEAEARLARWRAAAALPAGPDAADVVARVRAALADDLDTPGALAAVDGWATDALEGGGDDAAA---  368 (384)
T ss_pred             cCCCCCcccCHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhccCCCccc---
Confidence            99999 999998876    345555432221 113345778999999999999999999999999999998544321   


Q ss_pred             HHHHHHHHHHHhHccc
Q psy6851         343 RDIGAYVTKILTVFGC  358 (948)
Q Consensus       343 ~~i~~~V~~mL~VLGL  358 (948)
                        .+.+.+.|..+||+
T Consensus       369 --~~~~~~~~~~~~~~  382 (384)
T PRK12418        369 --PALVATAVDALLGV  382 (384)
T ss_pred             --hHHHHHHHHHHhCc
Confidence              23345666777776

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase

Probab=100.00  E-value=2.3e-60  Score=533.87  Aligned_cols=237  Identities=21%  Similarity=0.271  Sum_probs=205.1

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCC----cEEEeec
Q psy6851          87 AAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNG----SVYFNVN  160 (948)
Q Consensus        87 ~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~G----sVYFDv~  160 (948)
                      -+-+..|.+.|+++++++++++..|.++|.  ||.+|+++||||+||++|| +||++|++|||||+.+|    ||||||+
T Consensus        86 DKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Lni~~~d~~~RaTe~i~~ii-~~i~~L~~kG~aY~~~~~~~~~VYFdv~  164 (411)
T TIGR03447        86 DPLFERAERDGVDWRELGTSQIDLFREDMEALRVLPPRDYIGAVESIDEVI-EMVEKLLAAGAAYEVEGPEYPDVYFSIE  164 (411)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCCCCCHHHHH-HHHHHHHHCCCEEecCCCCcCcEEEecc
Confidence            334555667788888888888889998888  9999999999999999999 79999999999999876    9999999


Q ss_pred             cCCCCCC--------------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----
Q psy6851         161 AFDSQPN--------------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF----  216 (948)
Q Consensus       161 ~f~~~g~--------------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc----  216 (948)
                      +|++||.                    +.|+|.+|.||+|||++++|||.|+||||.          |||||||||    
T Consensus       165 ~~~~YG~Ls~~~~~~~~~~~~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~----------GRPGWHiECsam~  234 (411)
T TIGR03447       165 ATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAAREGEPSWDSPFGP----------GRPGWHIECSAIA  234 (411)
T ss_pred             chhccccccCCCHHHHHhhhcccccCcccccCCCCcccceeCCCCCCCCCccCCCCC----------CCChhHHHHHHHH
Confidence            9999973                    148899999999999999999999999995          999999999    


Q ss_pred             ---eccC-ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHHH-----------
Q psy6851         217 ---YGTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF-----------  264 (948)
Q Consensus       217 ---LG~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef~-----------  264 (948)
                         ||.+ |||+||.||+|||||||                 +|+|+|.++|+||||||||++++++++           
T Consensus       235 ~~~lg~~~Dih~GG~DLifpHheneiaq~~A~~g~~~~~~~w~H~g~l~~~G~KMSKSlGN~i~~~dl~~~g~dp~~lRl  314 (411)
T TIGR03447       235 TNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAATGVRRMARHYVHAGMIGLDGEKMSKSLGNLVFVSKLRAAGVDPAAIRL  314 (411)
T ss_pred             HHHcCCceecccCcccccccchHhHHHHHHHhcCCCCcceEEEECCEECcCCCCccCcCCCCCCHHHHHhcCCCcccEEE
Confidence               8998 99999999999999986                 678899999999999999999999863           


Q ss_pred             HHHHHHHhh-cCCChhhhH----HHHhhHHHhHHH-hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhc
Q psy6851         265 LNVKDHIRN-LKFPATTVS----SFEKWTQADLEL-STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLR  334 (948)
Q Consensus       265 l~ls~hyR~-l~~s~~~l~----~~~r~~~ad~eL-~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd  334 (948)
                      .++++|||+ ++|+++.|+    .+++|...-..+ ...+.++..+|.+||+||||||.|+++||++++.+|..-.
T Consensus       315 ~lls~~Yr~pl~fs~e~l~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~al~dDln~p~a~~~l~~~~~~~n~~~~  390 (411)
T TIGR03447       315 GLLAGHYRQDRDWTDAVLAEAEARLARWRAALAATDAPDATDLIARLRQHLANDLDTPAALAAVDNWAAAALSSGG  390 (411)
T ss_pred             EEecCCCCCCCccCHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCC
Confidence            236999999 999998876    455665443222 1123456788999999999999999999999999998643

Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.

>TIGR00435 cysS cysteinyl-tRNA synthetase

Probab=100.00  E-value=2.2e-59  Score=536.26  Aligned_cols=316  Identities=23%  Similarity=0.289  Sum_probs=249.0

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC-CcEEEeeccCCCCCC-
Q psy6851          92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN-GSVYFNVNAFDSQPN-  167 (948)
Q Consensus        92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~-GsVYFDv~~f~~~g~-  167 (948)
                      .|.+.|+++.++++.+++.|.++|.  ||.+|+++||+|+||++|+ ++|++|+++|+||+++ |+|||||.+|++||. 
T Consensus        76 ~A~~~g~~~~e~a~~~~~~f~~dl~~LgI~~d~~~~raT~hi~~i~-~~i~~L~ekG~aY~~~~g~vyfdv~~~~~yG~l  154 (465)
T TIGR00435        76 RARENGESVYEVSERFIEAYFEDMKALNVLPPDLEPRATEHIDEII-EFIEQLIEKGYAYVSDNGDVYFDVSKFKDYGKL  154 (465)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCcCCccccccHHHHH-HHHHHHHHCCCEEEecCCcEEEeccccchhccC
Confidence            3455566666677777777877777  9999999999999999999 7999999999999998 999999999999874 


Q ss_pred             ---------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccc
Q psy6851         168 ---------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGI  224 (948)
Q Consensus       168 ---------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~  224 (948)
                                     .+-.|.+|.||+|||++++|||.|+||||.          |||||||||       ||.+ |||+
T Consensus       155 s~~~~~~~~~~~~~~~~~~K~~p~DF~Lwk~~~~~~~~w~spwG~----------grpgWhiecsam~~~~lg~~~Dih~  224 (465)
T TIGR00435       155 SKQDLDQLEAGARVDVDEAKRNKLDFVLWKSSKEGEPKWDSPWGK----------GRPGWHIECSAMNDKYLGDQIDIHG  224 (465)
T ss_pred             CCCCHHHHhcccccCcccccCCCCCceeeCCCCCCCCCCcCCCCC----------CCCCcHhHHHHHHHHhcCCCceeec
Confidence                           012388899999999999999999999995          999999999       8998 9999


Q ss_pred             ccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCC
Q psy6851         225 CRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFP  277 (948)
Q Consensus       225 GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s  277 (948)
                      ||.||+||||||+                +|+|+|.++|+|||||+||+++++++          |.+++.|||+ ++|+
T Consensus       225 gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v~~~g~KMSKS~GN~i~~~dll~~~~~dalR~~ll~~~~~~~l~fs  304 (465)
T TIGR00435       225 GGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFLMIDNEKMSKSLGNFFTVRDVLKNYDPEILRYFLLSVHYRSPLDFS  304 (465)
T ss_pred             cccccccchHHHHHHHHHHhcCCCCCcEEEEeeEEEecCccccccCCCcCCHHHHHHHCCHHHHHHHHHhCCCCCCCccC
Confidence            9999999999986                68899999999999999999999875          3447899999 9999


Q ss_pred             hhhhH----HHHhhHHHhHHH--------------hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH-hhhcCCCC
Q psy6851         278 ATTVS----SFEKWTQADLEL--------------STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVN-IYLRGTPN  338 (948)
Q Consensus       278 ~~~l~----~~~r~~~ad~eL--------------~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN-~yLd~~~~  338 (948)
                      .+.+.    .+.++...-..+              ......+.+.|.+||+||||||.|+++||++++.+| ..++    
T Consensus       305 ~~~l~~a~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~dDlnt~~a~~~l~~~~~~~n~~~~~----  380 (465)
T TIGR00435       305 EELLEAAKNALERLYKALRVLDTTLAYSGNQSLNKFPDEKEFEARFVEAMDDDLNTANALAVLFELAKSINLTFVS----  380 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhhcc----
Confidence            98765    234443321111              112345678999999999999999999999999999 4442    


Q ss_pred             HHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccc
Q psy6851         339 QLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRD  418 (948)
Q Consensus       339 ~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~Re  418 (948)
                      ...+..+...++.|+.|||+..... ..|...+  ......     ..|+.|++.|.++|+.       |.|..+|++|+
T Consensus       381 ~~~~~~~~~~~~~l~~~lg~~~~~~-~~~~~~~--~~~~~~-----~~i~~l~~~R~~ar~~-------k~~~~aD~iR~  445 (465)
T TIGR00435       381 KADAALLIEHLIFLESRLGLLLGLP-SKPVQAG--SNDDEL-----GEIEALIEERSIARKE-------KDFAKADEIRD  445 (465)
T ss_pred             hHHHHHHHHHHHHHHHhcccCcccc-chhcccc--cccccH-----HHHHHHHHHHHHHHHh-------CCHHHHHHHHH
Confidence            1224456778889999999952111 0011100  000000     1367788877766666       89999999999


Q ss_pred             ccCCCCCCeeeecCCcceEE
Q psy6851         419 EVLPNVGVRLEDIEGKSYIT  438 (948)
Q Consensus       419 eflP~~G~~V~D~hARTyVs  438 (948)
                      +| ...|+.|+|+..+|.|.
T Consensus       446 ~L-~~~Gi~~~D~~~gt~w~  464 (465)
T TIGR00435       446 EL-LKKGIVLEDTPQGTTWR  464 (465)
T ss_pred             HH-HHCCCEEEECCCCceee
Confidence            88 68899999997777663

This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6

Probab=100.00  E-value=8.3e-59  Score=500.79  Aligned_cols=180  Identities=29%  Similarity=0.478  Sum_probs=139.6

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC-CcEEEeeccCCCCCC-
Q psy6851          92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN-GSVYFNVNAFDSQPN-  167 (948)
Q Consensus        92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~-GsVYFDv~~f~~~g~-  167 (948)
                      +|.+.|+++.+|+++++++|.+||+  ||++|+++||||||||+|| +||++||+|||||+++ |||||||++|++||. 
T Consensus        63 ~A~~~g~~~~ela~~y~~~f~~dm~~Lnv~~p~~~prate~i~~ii-~~i~~Li~~G~AY~~~~g~VYFdv~~~~~YG~L  141 (300)
T PF01406_consen   63 RAREEGVSPQELARRYEEEFFEDMKALNVLPPDHYPRATEHIPEII-ELIEKLIDKGHAYESEDGSVYFDVSKFPDYGKL  141 (300)
T ss_dssp             HHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEEGGGGHHHHH-HHHHHHHHTTSEEEETTSEEEE-CCGSTTTTTT
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHHcCCCCCccccchhccHHHHH-HHHHHHHHCCCeEEcCCCcEEEeeccccccccc
Confidence            3445566666666666668888888  9999999999999999999 7999999999999997 999999999999875 


Q ss_pred             ---------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cccc
Q psy6851         168 ---------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGI  224 (948)
Q Consensus       168 ---------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~  224 (948)
                                     ..|.|.+|.||+|||++++|||.|+||||.          |||||||||       ||.+ |||+
T Consensus       142 s~~~~~~l~~~~~~~~~~~K~~p~DFaLWK~~~~~e~~w~spwG~----------GRPGWHiECsam~~~~lG~~~DIH~  211 (300)
T PF01406_consen  142 SNQDLEDLEAGARVEVDYEKRNPRDFALWKAAKPGEPSWDSPWGK----------GRPGWHIECSAMSMKYLGDTFDIHG  211 (300)
T ss_dssp             TT-SHHHHHHCHHHTT-TTSSSTT-EEEEEE--TTS--B--TTSS----------EEE-HHHHHHHHHHHHHTTSEEEEE
T ss_pred             cccchhhHHhhhhcccccccCCCcceeeeecccccCCcccCCCcc----------CcCceeeehHHHHHHHcCCCceEEc
Confidence                           248899999999999999999999999995          999999999       8998 9999


Q ss_pred             ccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCC
Q psy6851         225 CRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFP  277 (948)
Q Consensus       225 GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s  277 (948)
                      ||+||+|||||||                +|+|||+++|+|||||||||++|+++          |+++++|||+ ++||
T Consensus       212 GG~DL~FPHHENEiAqs~a~~g~~~a~~W~H~g~l~~~g~KMSKSlgN~~~i~dll~~~~~~~lR~~~l~~hYr~~l~~s  291 (300)
T PF01406_consen  212 GGIDLIFPHHENEIAQSEAATGKPFANYWMHNGHLNVDGEKMSKSLGNFITIRDLLKKYSPDALRLFLLSTHYRKPLNFS  291 (300)
T ss_dssp             EEGGGTTTHHHHHHHHHHHHHSS-SEEEEEEE--EEETTCE--TTTT---BHHHHHTTS-HHHHHHHHHTS-TTS-EEE-
T ss_pred             cccccCCCCccchHHHHHHhhCchHHHHHHHHHHHhhcCccccccCCCEEEHHHHhhcCCHHHHHHHHhcCCCCCccccC
Confidence            9999999999997                78999999999999999999999986          3569999999 9999


Q ss_pred             hhhhH
Q psy6851         278 ATTVS  282 (948)
Q Consensus       278 ~~~l~  282 (948)
                      ++.|+
T Consensus       292 ~~~l~  296 (300)
T PF01406_consen  292 EENLE  296 (300)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=100.00  E-value=7.8e-38  Score=326.27  Aligned_cols=58  Identities=53%  Similarity=0.932  Sum_probs=56.2

Q ss_pred             hhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------------CCCccccchhhhH
Q psy6851         818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------QEGKELSKGLAKK  875 (948)
Q Consensus       818 WHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------~~g~kmsKsl~n~  875 (948)
                      |||||||||.++||.++|||+||+||+||||+||+||++|+++.+            ++|+|||||+||+
T Consensus       113 Wh~ec~am~~~~lg~~~dih~~G~Dl~fpH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~  182 (213)
T cd00672         113 WHIECSAMAMKYLGETFDIHGGGVDLIFPHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNF  182 (213)
T ss_pred             hhHHHHHHHHHHcCCCccEEeecCCCCcChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCc
Confidence            999999999999999999999999999999999999999998865            7899999999999

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=99.95  E-value=1.3e-29  Score=276.74  Aligned_cols=165  Identities=15%  Similarity=0.084  Sum_probs=119.9

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccc
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAH  701 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~  701 (948)
                      +++++|.++|.+||++|||..+   ...|...+|++.|..++++|.++|+ |+..+.||++..-                
T Consensus        79 ~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~~~~~----------------  142 (312)
T cd00668          79 EFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVELIFSRLYEKGLIYRGTHPVRITEQW----------------  142 (312)
T ss_pred             HHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHHHHHHHHHHCCCEEeecceeEeeeeE----------------
Confidence            5789999999999999999887   3445555899999999999999999 9988888665543                


Q ss_pred             ccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851         702 AAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS  781 (948)
Q Consensus       702 ~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~  781 (948)
                                     +-           ++.++......                               .+..+.  . 
T Consensus       143 ---------------f~-----------~~~~l~~~~~~-------------------------------~~~~~~--~-  162 (312)
T cd00668         143 ---------------FF-----------DMPKFKEKLLK-------------------------------ALRRGK--I-  162 (312)
T ss_pred             ---------------EE-----------EcHHHHHHHHH-------------------------------HHhcCC--c-
Confidence                           11           11121110000                               000000  0 


Q ss_pred             ccccccC-------CCCCCcceeeccCCCCCcccCCCCCCCCchhHHH----HH---HHHhhcCC--------CceeecC
Q psy6851         782 SQEASEK-------RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIEC----SV---MASAVLGP--------QLDIHTG  839 (948)
Q Consensus       782 ~~~~~~K-------~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieC----s~---m~~~~lg~--------~~dih~G  839 (948)
                       .....|       +++.||+|++         ++|||.|+|||||+|    ++   |+..+++.        ++|||+|
T Consensus       163 -~p~~~~~~~~~~l~~~~d~~isR---------~~~WG~~~P~~~i~~Wfds~~~~~~~~~~~~~~~~~~~~~~~di~~~  232 (312)
T cd00668         163 -VPEHVKNRMEAWLESLLDWAISR---------QRYWGTPLPEDVFDVWFDSGIGPLGSLGYPEEKEWFKDSYPADWHLI  232 (312)
T ss_pred             -CChHHHHHHHHHHhCCCCeEEec---------cCCCCCcCCcccccchhhccHHHHHHcCCCccchhhhhcCCceEEEE
Confidence             000112       3566999965         568999999999999    64   55555554        6899999


Q ss_pred             CCCCCCCCChhHHHHHhccCCC-C-----------CCC-ccccchhhhHh
Q psy6851         840 GVDLKFPHHDNELAQAEGLPTH-D-----------QEG-KELSKGLAKKL  876 (948)
Q Consensus       840 G~Dl~FPHH~ne~aq~e~~~~~-~-----------~~g-~kmsKsl~n~l  876 (948)
                      |.|++||||.+++||++++.+. .           .+| +|||||+||++
T Consensus       233 G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v  282 (312)
T cd00668         233 GKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVI  282 (312)
T ss_pred             ecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcC
Confidence            9999999999999999998765 3           455 99999999994

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=99.93  E-value=3.2e-27  Score=272.68  Aligned_cols=205  Identities=14%  Similarity=0.088  Sum_probs=124.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccc-cccCCCCCcccc
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKP-AVKAPAKPVAHA  702 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~p-a~k~~~k~~~~~  702 (948)
                      ++++|..+|.+||++|||. ++.++|+++  |+..|+.++++|.++|+ |+.+++|||+++++.=-+ ..-..+.+.   
T Consensus        68 ~~~~~~~~~~~~l~~l~I~-~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~l~~~~p~---  143 (511)
T PRK11893         68 LADRNSAAFKRLWEALNIS-YDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGWYCVRCEEFYTESELIEDGYR---  143 (511)
T ss_pred             HHHHHHHHHHHHHHHhCCC-cCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeccccccccCCHHHhcCCCCC---
Confidence            5789999999999999998 688888888  99999999999999999 999999999998831000 000000000   


Q ss_pred             cchhhhhhcCCCCCCCCCCCCC-CcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851         703 AEPAAAKKAESSSDDDSSSEDE-KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS  781 (948)
Q Consensus       703 ~~~~~akk~eSSsd~~ssse~e-~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~  781 (948)
                                 |.-..  ++-+ .+..+-+.+++.-+....  ..-   .+   .     +..   ..|.....   .+ 
T Consensus       144 -----------~~~~~--~~~~~~~~~~~f~~l~~~~~~l~--~~~---~~---~-----~~~---~~p~~~~~---~~-  190 (511)
T PRK11893        144 -----------CPPTG--APVEWVEEESYFFRLSKYQDKLL--ELY---EA---N-----PDF---IQPASRRN---EV-  190 (511)
T ss_pred             -----------CCCCC--CcceEEecCeEEEEcHHHHHHHH--HHH---Hh---C-----CCc---cCCHHHHH---HH-
Confidence                       00000  0000 000001222211000000  000   00   0     000   00000000   00 


Q ss_pred             ccccccCCCCCCcceee-ccC-----CCCC------cccCCCC----CCCCchhHHHHHH---HHhhcCCCceeecCCCC
Q psy6851         782 SQEASEKRSPNDFALWK-KSK-----AGEP------WWSSPWG----EGRPGWHIECSVM---ASAVLGPQLDIHTGGVD  842 (948)
Q Consensus       782 ~~~~~~K~~~~DfaLwk-~~k-----~~ep------~w~spwg----~GrPgWHieCs~m---~~~~lg~~~dih~GG~D  842 (948)
                        ..--+++..||++|+ ...     |+++      |+++.+|    .|+||   ||++|   ...++  +.|+|+||.|
T Consensus       191 --~~~l~~~~~D~~isR~~~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~---~~~~~~~~~~~~~--~~D~~~~G~D  263 (511)
T PRK11893        191 --ISFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALTNYLTALGYPD---DEELLAELFNKYW--PADVHLIGKD  263 (511)
T ss_pred             --HHHHHCCCCCcccCCCCCCCCccCCCCCCceEEEEecCcHHHHhHhcccc---ccccchhHHHhcC--CCcceEeccc
Confidence              011256789999999 443     5553      4455544    36787   99998   34555  5899999999


Q ss_pred             CCCCCChhHHHHHhccCCCC-----------CCCccccchhhhH
Q psy6851         843 LKFPHHDNELAQAEGLPTHD-----------QEGKELSKGLAKK  875 (948)
Q Consensus       843 l~FPHH~ne~aq~e~~~~~~-----------~~g~kmsKsl~n~  875 (948)
                      ++||||.+++||+.++....           .+|+|||||+||+
T Consensus       264 ~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~~~G~KMSKS~GN~  307 (511)
T PRK11893        264 ILRFHAVYWPAFLMAAGLPLPKRVFAHGFLTLDGEKMSKSLGNV  307 (511)
T ss_pred             ccccchhHHHHHHHhCCCCCCCEEEeeccEEECCeeecccCCcE
Confidence            99999999999999973221           7999999999999

>PRK11893 methionyl-tRNA synthetase; Reviewed

Probab=99.86  E-value=3e-21  Score=223.32  Aligned_cols=230  Identities=17%  Similarity=0.174  Sum_probs=161.7

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc--C----
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNA--F----  162 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~--f----  162 (948)
                      |.+.|+++.++++.+...|.+++.  ||. ++.++|.|+  |+..|+ +++++|+++|++|+..++|||++..  |    
T Consensus        58 a~~~g~~~~~~~~~~~~~~~~~l~~l~I~-~D~~~~t~~~~~~~~v~-~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~  135 (511)
T PRK11893         58 AEEAGISPQELADRNSAAFKRLWEALNIS-YDDFIRTTDPRHKEAVQ-EIFQRLLANGDIYLGKYEGWYCVRCEEFYTES  135 (511)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHhCCC-cCCceeCCCHHHHHHHH-HHHHHHHHCCCEEEeeeeeeccccccccCCHH
Confidence            344566666677777777877777  986 777888887  999999 7999999999999999999999986  4    


Q ss_pred             --CCC-------CC--------CCccccCC---------------------------------ccccccccccCCCCcCC
Q psy6851         163 --DSQ-------PN--------HYYAKLVP---------------------------------EAYGDTKTLQEGEVRGY  192 (948)
Q Consensus       163 --~~~-------g~--------~~YgKL~P---------------------------------~DFaLWK~ak~gEp~we  192 (948)
                        .+.       |.        +-|.+|+.                                 .||++|+.        .
T Consensus       136 ~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~D~~isR~--------~  207 (511)
T PRK11893        136 ELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPASRRNEVISFVKSGLKDLSISRT--------N  207 (511)
T ss_pred             HhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHCCCCCcccCCC--------C
Confidence              110       00        22444432                                 23333330        1


Q ss_pred             CCCCCcccCCC--------C------CCCCCCcceeEeec------c---CccccccccccCCccccc------------
Q psy6851         193 PPWPARIEGLA--------D------ETPNRLKYHIFFYG------T---RETGICRQDELFPYTEFK------------  237 (948)
Q Consensus       193 spWg~~~~~m~--------~------~~~GRPGWHIEcLG------~---~dih~GG~DL~FPHHEne------------  237 (948)
                      ..||.|+++..        +      ...|+||   ||-+      .   .|+|++|.|++||||.++            
T Consensus       208 ~~WGipiP~~~~~~~~vWfda~~~y~s~~~~p~---~~~~~~~~~~~~~~~D~~~~G~D~~~~h~~~~~a~~~a~~~~~p  284 (511)
T PRK11893        208 FDWGIPVPGDPKHVIYVWFDALTNYLTALGYPD---DEELLAELFNKYWPADVHLIGKDILRFHAVYWPAFLMAAGLPLP  284 (511)
T ss_pred             CCCCccCCCCCCceEEEEecCcHHHHhHhcccc---ccccchhHHHhcCCCcceEecccccccchhHHHHHHHhCCCCCC
Confidence            24666665432        0      1236665   5532      1   279999999999999975            


Q ss_pred             ---cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH-------------HHhhHH
Q psy6851         238 ---DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS-------------FEKWTQ  289 (948)
Q Consensus       238 ---~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~-------------~~r~~~  289 (948)
                         +++|+|.++|+|||||+||+|++.++           |++..++|++ ++|+.+.+..             +.|+..
T Consensus       285 ~~~~~~g~v~~~G~KMSKS~GN~i~~~dll~~~g~DalR~~ll~~~~~~~d~~Fs~~~~~~~~~~~l~~~l~n~~~r~~~  364 (511)
T PRK11893        285 KRVFAHGFLTLDGEKMSKSLGNVIDPFDLVDEYGVDAVRYFLLREIPFGQDGDFSREAFINRINADLANDLGNLAQRTLS  364 (511)
T ss_pred             CEEEeeccEEECCeeecccCCcEEcHHHHHHHcCcHHHHHHHHhcCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               46799999999999999999998875           3322347777 8998876521             222211


Q ss_pred             H------------------hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         290 A------------------DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       290 a------------------d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                      .                  +..+...+..+...+.++| |+|+++.|+..|+++++.+|.|++..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~d~~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~~  428 (511)
T PRK11893        365 MIAKNFDGKVPEPGALTEADEALLEAAAALLERVRAAM-DNLAFDKALEAILALVRAANKYIDEQ  428 (511)
T ss_pred             HHHHhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhhC
Confidence            0                  1123345567889999999 99999999999999999999999753

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=99.81  E-value=4.6e-21  Score=210.68  Aligned_cols=198  Identities=17%  Similarity=0.012  Sum_probs=124.7

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccccc
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA  703 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~  703 (948)
                      +++.+.+.|.++|++|||. ++.++|+++  |++.|.+++++|.++|+ |+.+..+++++.++.-.+-            
T Consensus        67 ~~~~~~~~~~~~l~~LgI~-~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~~~~~yc~~~~~~l~e------------  133 (319)
T cd00814          67 LCDKYHEIFKDLFKWLNIS-FDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGEYEGLYCVSCERFLPE------------  133 (319)
T ss_pred             HHHHHHHHHHHHHHHcCCc-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeECCCCCcEeeE------------
Confidence            5678999999999999996 689999887  99999999999999999 9988888999888421110            


Q ss_pred             chhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccc-cCCCCchhhccCCCCCCc
Q psy6851         704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV-KAPAKPVAQAAKPGDLSS  782 (948)
Q Consensus       704 ~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~-k~~~~~~~~~~~~~~~~~  782 (948)
                                   .-  +++     +-+-++..-+...  .+.-    +.  ..+.--|+. +.... .-+..+-.+.. 
T Consensus       134 -------------~~--~~~-----~~ff~l~~~~~~l--~~~~----~~--~~~~~~p~~~~~~~~-~~l~~~l~d~~-  183 (319)
T cd00814         134 -------------WR--EEE-----HYFFRLSKFQDRL--LEWL----EK--NPDFIWPENARNEVL-SWLKEGLKDLS-  183 (319)
T ss_pred             -------------EE--eee-----eEEEEhHHHHHHH--HHHH----Hh--CCccCCCHHHHHHHH-HHHhCCCcccC-
Confidence                         00  000     0111111000000  0000    00  000000000 00000 00111111221 


Q ss_pred             cccccCCCCCCcceeeccCCCCCc-----c-cCCCC----CCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHH
Q psy6851         783 QEASEKRSPNDFALWKKSKAGEPW-----W-SSPWG----EGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNEL  852 (948)
Q Consensus       783 ~~~~~K~~~~DfaLwk~~k~~ep~-----w-~spwg----~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~  852 (948)
                             -.+|++.|.-.-|+.+.     | +++||    -|+++|+.+|+.+-  ..+...+||..|.|++|+|+....
T Consensus       184 -------isR~~~~WGipvp~~~~~~~yvWfda~~~y~~~~~~~~~~~~~~~~~--~~~~~~~v~~~G~D~~~fh~~~~p  254 (319)
T cd00814         184 -------ITRDLFDWGIPVPLDPGKVIYVWFDALIGYISATGYYNEEWGNSWWW--KDGWPELVHFIGKDIIRFHAIYWP  254 (319)
T ss_pred             -------CCccCcccCeeCCCCCCcEEEEehhhHHHHHHHcccccccccchhhh--hcCCCceEEEEeechhhhhHHHHH
Confidence                   23466678766666652     5 89998    89999999998333  346688999999999999999999


Q ss_pred             HHHhccCCCC-----------CCCccccchhhhHh
Q psy6851         853 AQAEGLPTHD-----------QEGKELSKGLAKKL  876 (948)
Q Consensus       853 aq~e~~~~~~-----------~~g~kmsKsl~n~l  876 (948)
                      |+..+..-..           ++|+|||||+||++
T Consensus       255 a~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i  289 (319)
T cd00814         255 AMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVV  289 (319)
T ss_pred             HHHHhCCCCCCcEeeeeeeEEECCeeecccCCccc
Confidence            9977653221           79999999999993

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase

Probab=99.78  E-value=8.9e-20  Score=190.98  Aligned_cols=112  Identities=21%  Similarity=0.305  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEee
Q psy6851          82 KAELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNV  159 (948)
Q Consensus        82 ~~~~a~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv  159 (948)
                      |.+.-.+-+.+|.+.|++++++++++++.|.++++  ||.+|+.++|+                                
T Consensus        65 ~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l~i~~~d~~~rt--------------------------------  112 (213)
T cd00672          65 ITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKALNVLPPDVVPRV--------------------------------  112 (213)
T ss_pred             cCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcceee--------------------------------
Confidence            44444444555666788888888888888988887  99999999998                                


Q ss_pred             ccCCCCCCCCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccccccccccC
Q psy6851         160 NAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQDELF  231 (948)
Q Consensus       160 ~~f~~~g~~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~DL~F  231 (948)
                                                                          |||||       ||.+ |||+||.||+|
T Consensus       113 ----------------------------------------------------Wh~ec~am~~~~lg~~~dih~~G~Dl~f  140 (213)
T cd00672         113 ----------------------------------------------------WHIECSAMAMKYLGETFDIHGGGVDLIF  140 (213)
T ss_pred             ----------------------------------------------------hhHHHHHHHHHHcCCCccEEeecCCCCc
Confidence                                                                89999       8998 99999999999


Q ss_pred             Cccccc----------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHHHhh-cCCC
Q psy6851         232 PYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDHIRN-LKFP  277 (948)
Q Consensus       232 PHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~hyR~-l~~s  277 (948)
                      |||+|+                +|.|+|.++|+|||||+||++++.+++          .+++.+||+ ++|+
T Consensus       141 pH~~~~~a~~~a~~g~~~~~~~~h~~~v~~~g~KMSKs~Gn~v~~~dll~~~~~da~R~~~l~~~~~~~l~f~  213 (213)
T cd00672         141 PHHENEIAQSEAATGKPFARYWLHTGHLTIDGEKMSKSLGNFITVRDALKKYDPEVLRLALLSSHYRSPLDFS  213 (213)
T ss_pred             ChHHHHHHHHHHHhCCCCCcEEEEEEEEeccCcchhhcCCCccCHHHHHHHcCHHHHHHHHHhCCcCCCCCCC
Confidence            999986                466788899999999999999988752          336777777 6653

Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases

Probab=99.75  E-value=5.9e-19  Score=193.15  Aligned_cols=142  Identities=13%  Similarity=0.052  Sum_probs=110.3

Q ss_pred             ChHHHHHHHHHHHHHHhc--CCCCC---CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCcccc
Q psy6851          99 PPSEMFKMETDKYSQFDE--TVLPP---TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL  173 (948)
Q Consensus        99 ~~~el~~~~~~~f~~dm~--nV~~P---~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL  173 (948)
                      +..++++++++.|.+++.  ||..+   .+.|...+|++.|+ +++++|.++|++|+..+.||++...|.++     +++
T Consensus        76 ~~~~~~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~~~~~~v~-~~f~~L~~~G~iY~~~~~v~~~~~~f~~~-----~~l  149 (312)
T cd00668          76 DPKEFVEEMSGEHKEDFRRLGISYDWSDEYITTEPEYSKAVE-LIFSRLYEKGLIYRGTHPVRITEQWFFDM-----PKF  149 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccccCCCCeECCCHHHHHHHH-HHHHHHHHCCCEEeecceeEeeeeEEEEc-----HHH
Confidence            456677777778877776  99776   35566678999999 79999999999999999999999988774     332


Q ss_pred             C---------------------------CccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----------
Q psy6851         174 V---------------------------PEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF----------  216 (948)
Q Consensus       174 ~---------------------------P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc----------  216 (948)
                      .                           +.||++         ++.++||.          |+|||||||          
T Consensus       150 ~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~d~~i---------sR~~~WG~----------~~P~~~i~~Wfds~~~~~~  210 (312)
T cd00668         150 KEKLLKALRRGKIVPEHVKNRMEAWLESLLDWAI---------SRQRYWGT----------PLPEDVFDVWFDSGIGPLG  210 (312)
T ss_pred             HHHHHHHHhcCCcCChHHHHHHHHHHhCCCCeEE---------eccCCCCC----------cCCcccccchhhccHHHHH
Confidence            2                           123333         34568885          999999999          


Q ss_pred             ----ecc---------CccccccccccCCccccc----------------cccccEEEcc-cchhhcchhHHHHHHHHH
Q psy6851         217 ----YGT---------RETGICRQDELFPYTEFK----------------DKYGKVRVHL-SQKQQSLKLVVIMKEFFL  265 (948)
Q Consensus       217 ----LG~---------~dih~GG~DL~FPHHEne----------------~h~G~l~i~g-eKMSKSLGN~vti~ef~l  265 (948)
                          ++.         .|+|++|.|++||||+++                ..+|+|.+.| +|||||+||+|++.+++.
T Consensus       211 ~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~KmSKS~gn~v~~~d~~~  289 (312)
T cd00668         211 SLGYPEEKEWFKDSYPADWHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVLDEGGQKMSKSKGNVIDPSDVVE  289 (312)
T ss_pred             HcCCCccchhhhhcCCceEEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEEcCCCccccccCCCcCCHHHHHH
Confidence                222         279999999999999975                1137777777 999999999999988754

Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=99.71  E-value=1.3e-18  Score=191.10  Aligned_cols=59  Identities=8%  Similarity=-0.064  Sum_probs=50.5

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHh----CcccCCC-cccCCcccccCCC
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQ----TPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~----~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      +++++|.+.|.++|++|||. ++..++++.+.|+++++|+    +|.++|+ |...+.||||+..
T Consensus        66 e~~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~  129 (314)
T cd00812          66 DWTEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEAPVNWCKLL  129 (314)
T ss_pred             HHHHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCEEecCceeeeeCcc
Confidence            35789999999999999995 5766777778888888887    9999999 9999999999544

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases

Probab=99.55  E-value=2.8e-15  Score=165.11  Aligned_cols=174  Identities=15%  Similarity=0.161  Sum_probs=119.0

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeC-------------
Q psy6851          90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESN-------------  152 (948)
Q Consensus        90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~-------------  152 (948)
                      +.+|.+.|++++++++.+.+.|.++++  || .++.++|.|+  |++.+. +++++|.++|++|+.+             
T Consensus        54 ~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI-~~D~~~~tt~~~~~~~v~-~i~~~L~ekG~iY~~~~~~~yc~~~~~~l  131 (319)
T cd00814          54 EQKAEEEGVTPQELCDKYHEIFKDLFKWLNI-SFDYFIRTTSPRHKEIVQ-EFFKKLYENGYIYEGEYEGLYCVSCERFL  131 (319)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC-cCCCCeeCCCHHHHHHHH-HHHHHHHHCCCEEeeeeeeeECCCCCcEe
Confidence            334445677778888888888888777  98 5788999887  999999 7999999999999865             


Q ss_pred             ------CcEEEeeccCCCCCCCCcccc----CCcccc-cccc-ccCCCC----cCCC-CCCCcccCCCC-----------
Q psy6851         153 ------GSVYFNVNAFDSQPNHYYAKL----VPEAYG-DTKT-LQEGEV----RGYP-PWPARIEGLAD-----------  204 (948)
Q Consensus       153 ------GsVYFDv~~f~~~g~~~YgKL----~P~DFa-LWK~-ak~gEp----~wes-pWg~~~~~m~~-----------  204 (948)
                            .++||++++|.++..+.+.+.    -|..+. ..+. .+.|-+    +-.. .||.|.++-+.           
T Consensus       132 ~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~~~~~yvWfda~~  211 (319)
T cd00814         132 PEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDPGKVIYVWFDALI  211 (319)
T ss_pred             eEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCCCcEEEEehhhHH
Confidence                  789999999876432212111    111100 0000 000101    1122 46655443221           


Q ss_pred             ---CCCCCCcceeEe-----eccC-ccccccccccCCccccc---------------cccccEEEcccchhhcchhHHHH
Q psy6851         205 ---ETPNRLKYHIFF-----YGTR-ETGICRQDELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIM  260 (948)
Q Consensus       205 ---~~~GRPGWHIEc-----LG~~-dih~GG~DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti  260 (948)
                         .+-|+++|+.+|     .+.. ++|++|.|.+|+|+.++               .++|++.++|+|||||+||+|++
T Consensus       212 ~y~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~~~~g~kmSkS~gn~i~~  291 (319)
T cd00814         212 GYISATGYYNEEWGNSWWWKDGWPELVHFIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYLTVEGKKMSKSRGNVVDP  291 (319)
T ss_pred             HHHHHcccccccccchhhhhcCCCceEEEEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeEEECCeeecccCCcccCH
Confidence               135788888765     3333 89999999999998864               45789999999999999999999


Q ss_pred             HHHHH
Q psy6851         261 KEFFL  265 (948)
Q Consensus       261 ~ef~l  265 (948)
                      .+++.
T Consensus       292 ~~~l~  296 (319)
T cd00814         292 DDLLE  296 (319)
T ss_pred             HHHHH
Confidence            88864

Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.

>TIGR00398 metG methionyl-tRNA synthetase

Probab=99.52  E-value=2.9e-13  Score=158.38  Aligned_cols=238  Identities=15%  Similarity=0.161  Sum_probs=146.2

Q ss_pred             hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC---CC--
Q psy6851          95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD---SQ--  165 (948)
Q Consensus        95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~---~~--  165 (948)
                      +.|+++.++++.+.+.|.+++.  ||. ++.++|.|+  |++.|. +++++|+++|++|+.++.|||++..=.   +.  
T Consensus        58 ~~g~~~~e~~~~~~~~~~~~l~~LgI~-~D~~~~t~~~~~~~~v~-~~~~~L~~kG~iY~~~~~v~~~~~~~~~l~~~~v  135 (530)
T TIGR00398        58 QEGLTPKELVDKYHEEFKDDWKWLNIS-FDRFIRTTDEEHKEIVQ-KIFQKLKENGYIYEKEIKQLYCPECEMFLPDRYV  135 (530)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHhCCC-CCCCccCCCHHHHHHHH-HHHHHHHHCCCEEEeeeEEEecCCCCcCCchhhh
Confidence            3455666666666667776666  986 788888888  999999 799999999999999999999985211   00  


Q ss_pred             -CCC-------Ccc-------------cc-------C--C-------------cc--------------ccccccc----
Q psy6851         166 -PNH-------YYA-------------KL-------V--P-------------EA--------------YGDTKTL----  184 (948)
Q Consensus       166 -g~~-------~Yg-------------KL-------~--P-------------~D--------------FaLWK~a----  184 (948)
                       |.-       .||             +|       .  |             .+              +..|...    
T Consensus       136 ~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~  215 (530)
T TIGR00398       136 EGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRKNPESGSPASNVKNK  215 (530)
T ss_pred             cCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHhCCccCCCcHHHHHH
Confidence             000       000             00       0  0             00              1001000    


Q ss_pred             -----cCCCCcC----CCC-CCCcccCCCCC-----CCCCCcceeEee----cc---------Cc-----cccccccccC
Q psy6851         185 -----QEGEVRG----YPP-WPARIEGLADE-----TPNRLKYHIFFY----GT---------RE-----TGICRQDELF  231 (948)
Q Consensus       185 -----k~gEp~w----esp-Wg~~~~~m~~~-----~~GRPGWHIEcL----G~---------~d-----ih~GG~DL~F  231 (948)
                           ..+-+.|    ... ||-|++.+...     ...-.|| +-++    |.         .+     +|..|.|.+|
T Consensus       216 ~~~~l~~~l~d~~iSR~~~~WGipvP~~~~~~~yvW~da~~~y-~~~~~~~~~~~~~~~~~w~~~~~~~~v~~~G~Di~~  294 (530)
T TIGR00398       216 AQNWLKGGLKDLAITRDLVYWGIPVPNDPNKVVYVWFDALIGY-ISSLGILSGDTEDWKKWWNNDEDAELIHFIGKDIVR  294 (530)
T ss_pred             HHHHHhCCCCCccccCcCCCCCeeCCCCCCcEEEEeecchHHh-HhhhccccCChhhHHHhCCCCCCceEEEEEecccch
Confidence                 0001112    233 77766544310     0000111 1011    10         12     7888999999


Q ss_pred             Cccccc---------------cccccEEEcccchhhcchhHHHHHHHH----------HHHHHH-Hhh-cCCChhhhH--
Q psy6851         232 PYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEFF----------LNVKDH-IRN-LKFPATTVS--  282 (948)
Q Consensus       232 PHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef~----------l~ls~h-yR~-l~~s~~~l~--  282 (948)
                      .|.-..               ..+|+|.++|+|||||+||+|++.+++          .+++.. +.+ ++|+.+.+.  
T Consensus       295 ~h~~~~~a~l~~~~~~~~~~~~~~g~v~~~g~KmSKS~Gn~i~~~d~i~~~g~D~lR~~l~~~~~~~~d~~f~~~~l~~~  374 (530)
T TIGR00398       295 FHTIYWPAMLMGLGLPLPTQVFSHGYLTVEGGKMSKSLGNVVDPSDLLARFGADILRYYLLKERPLGKDGDFSWEDFVER  374 (530)
T ss_pred             hHHHHHHHHHHhCCCCCCCEEEeeccEEECCceecccCCceecHHHHHHHcCchHHHHHHhhCCCCCCCCCCCHHHHHHH
Confidence            985531               457999999999999999999988753          113322 333 677765432  


Q ss_pred             -------H----HHhhH------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851         283 -------S----FEKWT------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL  333 (948)
Q Consensus       283 -------~----~~r~~------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL  333 (948)
                             .    +.|+.                  ..+..+...+..+...+..+| ++++++.|+..|+++++.+|.|+
T Consensus       375 ~n~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~n~Yi  453 (530)
T TIGR00398       375 VNADLANKLGNLLNRTLGFIKKYFNGVLPSEDITDEEDKKLLKLINEALEQIDEAI-ESFEFRKALREIMKLADRGNKYI  453 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccchhhHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHH
Confidence                   0    11110                  012334556778889999999 89999999999999999999998


Q ss_pred             cCC
Q psy6851         334 RGT  336 (948)
Q Consensus       334 d~~  336 (948)
                      +..
T Consensus       454 ~~~  456 (530)
T TIGR00398       454 DEN  456 (530)
T ss_pred             hcC
Confidence            753

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=99.46  E-value=2.9e-14  Score=166.40  Aligned_cols=133  Identities=15%  Similarity=0.064  Sum_probs=107.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccccc--HHHHHHHHhCcccCCC-c-ccCCcccccCCCCCccccccCCCCCcccc
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEY--IPEIVASAQTPKPAAA-K-KAESSSDDDSSSEDEKPAVKAPAKPVAHA  702 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~--i~~ii~~i~~l~~~g~-Y-~~~gsvyfdvssede~pa~k~~~k~~~~~  702 (948)
                      ++.++.+.|.+|+++|||.. +.+++.++.  .+.+.+.+++|.++|+ | +.+|++||+++.                 
T Consensus       178 ~~~~~~~~~~~~l~~LgI~~-D~~~~es~~~~~~~~~~~~~~L~~~G~~y~~~~Ga~~~~~~~-----------------  239 (507)
T PRK01611        178 AVDISLDEIKEDLDRLGVHF-DVWFSESELYYNGKVDEVVEDLKEKGLLYVESDGALWVRLTE-----------------  239 (507)
T ss_pred             HHHHHHHHHHHHHHHcCCee-eEEeecCcchhcchHHHHHHHHHHCCCEEEeeCCcEEEEchh-----------------
Confidence            45689999999999999986 888888864  5689999999999999 9 889999998755                 


Q ss_pred             cchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCc
Q psy6851         703 AEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSS  782 (948)
Q Consensus       703 ~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~  782 (948)
                                    +.                                 |                              
T Consensus       240 --------------~~---------------------------------~------------------------------  242 (507)
T PRK01611        240 --------------FG---------------------------------D------------------------------  242 (507)
T ss_pred             --------------hC---------------------------------C------------------------------
Confidence                          21                                 0                              


Q ss_pred             cccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCC-
Q psy6851         783 QEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTH-  861 (948)
Q Consensus       783 ~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~-  861 (948)
                              +.|++|||.  .|.+.|.++    .++||++|...    ++.-|+|++++-++-|+++.   +.++++... 
T Consensus       243 --------~~~~vl~ks--dG~~~Y~t~----Dia~~~~k~~~----~d~~i~V~g~~q~~hf~~~~---~~~~~lg~~~  301 (507)
T PRK01611        243 --------DKDRVLIKS--DGTYTYFTR----DIAYHLYKFER----FDRVIYVVGADHHGHFKRLK---AALKALGYDP  301 (507)
T ss_pred             --------CCCeEEEEC--CCCccchHH----HHHHHHHHHhh----cCEEEEEECCChHHHHHHHH---HHHHHcCCCc
Confidence                    016999997  688887766    89999999965    78889999999999999997   444443211 


Q ss_pred             ---C------------CCCccccchhhhH
Q psy6851         862 ---D------------QEGKELSKGLAKK  875 (948)
Q Consensus       862 ---~------------~~g~kmsKsl~n~  875 (948)
                         .            -+|+|||||+||+
T Consensus       302 ~~~~~~~h~~~glv~~~~g~KMSkR~Gn~  330 (507)
T PRK01611        302 DALEVLLHQMVGLVRGGEGVKMSTRAGNV  330 (507)
T ss_pred             ccceEEEEEEEEeeECCCCCcccCCCCce
Confidence               1            2678999999999

>PLN02224 methionine-tRNA ligase

Probab=99.46  E-value=1e-12  Score=156.53  Aligned_cols=250  Identities=13%  Similarity=0.140  Sum_probs=159.8

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEe
Q psy6851          83 AELAAAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFN  158 (948)
Q Consensus        83 ~~~a~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFD  158 (948)
                      .+.-..-+.+|.+.|+++.++++++...|.+.++  || .++.++|.|+  |+..+. ++..+|.++|+.|..+..+||+
T Consensus       116 DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I-~~D~f~rTt~~~h~~~vq-~~f~~L~~~G~Iy~~~~~~~yc  193 (616)
T PLN02224        116 DEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDI-AYDKFIRTTDPKHEAIVK-EFYARVFANGDIYRADYEGLYC  193 (616)
T ss_pred             CCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCC-CCCcCeeCCCHHHHHHHH-HHHHHHHHCCCEEEeeeeeeec
Confidence            3333333444566788888888888888887777  88 7899999999  999998 7999999999999998899998


Q ss_pred             eccCCCCCCC------CccccC--C-------------ccc----cccccc------------------cCCCC----cC
Q psy6851         159 VNAFDSQPNH------YYAKLV--P-------------EAY----GDTKTL------------------QEGEV----RG  191 (948)
Q Consensus       159 v~~f~~~g~~------~YgKL~--P-------------~DF----aLWK~a------------------k~gEp----~w  191 (948)
                      ++-=. +..+      ...++.  |             .+|    ..|=..                  +.|=+    .=
T Consensus       194 ~~ce~-f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR  272 (616)
T PLN02224        194 VNCEE-YKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISR  272 (616)
T ss_pred             CCCCC-CCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccC
Confidence            75321 1110      000110  0             001    001000                  01100    11


Q ss_pred             C-CCCCCcccCCCCC--------------CCCC----CcceeE-eec-cCccccccccccCCccccc-------------
Q psy6851         192 Y-PPWPARIEGLADE--------------TPNR----LKYHIF-FYG-TRETGICRQDELFPYTEFK-------------  237 (948)
Q Consensus       192 e-spWg~~~~~m~~~--------------~~GR----PGWHIE-cLG-~~dih~GG~DL~FPHHEne-------------  237 (948)
                      . ..||-|.++.+..              +-|.    .||-.. .++ +.++|..|.|++|+|+-.+             
T Consensus       273 ~~~~WGIpvP~~~~~viYVWfDAl~~Yls~~~~~~~~~~~~~~~~~~w~~~v~~iGKDii~fH~i~wpa~l~~~g~~~P~  352 (616)
T PLN02224        273 ALVDWGIPVPDDDKQTIYVWFDALLGYISALTEDNKQQNLETAVSFGWPASLHLIGKDILRFHAVYWPAMLMSAGLELPK  352 (616)
T ss_pred             CCCCCceECCCCCCcEEEEehhhHHHHHHHhcccccccccchhhccCCCcceEEEeecccccHHHHHHHHHHHCCCCCCc
Confidence            2 3698877544310              0111    222111 011 2378999999999998754             


Q ss_pred             --cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhH---------H----HHhhHH-
Q psy6851         238 --DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVS---------S----FEKWTQ-  289 (948)
Q Consensus       238 --~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~---------~----~~r~~~-  289 (948)
                        ..+|+|.++|+|||||+||+|...++           |++....+.+ .+|+++.+.         .    +.|... 
T Consensus       353 ~i~~~g~l~~eG~KMSKS~GN~i~p~e~l~~ygaD~~R~yLl~~~p~~~d~~fs~~~~~~~~NseLan~lgNll~R~l~~  432 (616)
T PLN02224        353 MVFGHGFLTKDGMKMGKSLGNTLEPFELVQKFGPDAVRYFFLREVEFGNDGDYSEDRFIKIVNAHLANTIGNLLNRTLGL  432 (616)
T ss_pred             EEEecccEecCCccccccCCccCCHHHHHHHcCcHHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              34789999999999999999987764           3322233444 678776321         1    122110 


Q ss_pred             -----------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         290 -----------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       290 -----------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                                       .+..+...+..+...+.++| +.+++..|+..|+++++.+|.|+...
T Consensus       433 ~~k~~~~~~~~~~~~~~~d~~l~~~l~~li~~v~~~m-e~~~~~~Al~~i~el~~~~N~Yi~~~  495 (616)
T PLN02224        433 LKKNCESTLVEDSTVAAEGVPLKDTVEKLVEKAQTNY-ENLSLSSACEAVLEIGNAGNTYMDQR  495 (616)
T ss_pred             HHHhcCCcCCCccccccccHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhC
Confidence                             12234456677888999999 89999999999999999999999753

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=99.44  E-value=3.2e-12  Score=154.07  Aligned_cols=243  Identities=17%  Similarity=0.165  Sum_probs=149.6

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCC
Q psy6851          90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQ  165 (948)
Q Consensus        90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~  165 (948)
                      +.+|.+.|+++.++++++++.|.+++.  ||. ++.++|.|  +|+..++ +++++|+++|++|...+.|||++..=.-+
T Consensus        56 ~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~-~d~f~rtt~~~h~~~v~-~~~~~L~~~G~iy~~~~~~~y~~~~~~~l  133 (673)
T PRK00133         56 MLKAEKEGITPEELIARYHAEHKRDFAGFGIS-FDNYGSTHSEENRELAQ-EIYLKLKENGYIYEKTIEQLYDPEKGMFL  133 (673)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC-CCCCccCCcHHHHHHHH-HHHHHHHHCCCEEEeeeEEEEeCCCCCCc
Confidence            334445678888888888888887777  986 67888888  5999999 79999999999999999999997632100


Q ss_pred             CC-------------CCccc--------cCC---------------------------ccccc-----------cccc--
Q psy6851         166 PN-------------HYYAK--------LVP---------------------------EAYGD-----------TKTL--  184 (948)
Q Consensus       166 g~-------------~~YgK--------L~P---------------------------~DFaL-----------WK~a--  184 (948)
                      ..             +.||.        +.|                           .+|..           |...  
T Consensus       134 ~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~  213 (673)
T PRK00133        134 PDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITRSGELQPNVA  213 (673)
T ss_pred             cchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhcCCCCCHHHH
Confidence            00             01221        000                           00100           1000  


Q ss_pred             -------cCCCCcC----CCCC-CCcccCCCCC-----C----------CC--CC----cceeEee-cc--C-ccccccc
Q psy6851         185 -------QEGEVRG----YPPW-PARIEGLADE-----T----------PN--RL----KYHIFFY-GT--R-ETGICRQ  227 (948)
Q Consensus       185 -------k~gEp~w----espW-g~~~~~m~~~-----~----------~G--RP----GWHIEcL-G~--~-dih~GG~  227 (948)
                             +.|-+.|    ...| |.|.++.+..     .          .|  ..    .|-- .. ..  . .+|.-|.
T Consensus       214 ~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~~~~iyVW~dal~~Yl~~~~~~~~~~~~~~~~~-~w~~~~~~~~v~~iGk  292 (673)
T PRK00133        214 NKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRGGLDWDE-YWKKDSDTELYHFIGK  292 (673)
T ss_pred             HHHHHHHhCCCcccceeeeCCccceECCCCCCeEEEEcccchhhhhHHHhhhcccccchhHHH-hcCCCCCceEEEEEee
Confidence                   0111111    2347 7766533210     0          00  00    0000 00 00  1 2677788


Q ss_pred             cccCCccccc---------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh-h-cCCChh
Q psy6851         228 DELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR-N-LKFPAT  279 (948)
Q Consensus       228 DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR-~-l~~s~~  279 (948)
                      |.++.|-=.+               ..+|||.++|+|||||+||+|+..++           |++...... + .+|+.+
T Consensus       293 Di~~fH~i~wpa~l~a~g~~lP~~v~~hg~v~~~G~KMSKS~GNvV~p~dlie~ygaDalR~~ll~~~~~~~~D~~Fs~~  372 (673)
T PRK00133        293 DIIYFHTLFWPAMLEGAGYRLPTNVFAHGFLTVEGAKMSKSRGTFIWARTYLDHLDPDYLRYYLAAKLPETIDDLDFNWE  372 (673)
T ss_pred             cchhHHHHHHHHHHHhCCCCCCCEEeeeccEEecCCcccccCCcccCHHHHHHHcCchHHHHHHHhcCCCCCCCCCCCHH
Confidence            9888663221               34799999999999999999988765           232222233 2 677765


Q ss_pred             hhH---------H----HHhhH--------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh
Q psy6851         280 TVS---------S----FEKWT--------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIY  332 (948)
Q Consensus       280 ~l~---------~----~~r~~--------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~y  332 (948)
                      .+.         .    +.|..              ..+..+...+.++...+..+| ++|++..|+..|+++++.+|.|
T Consensus       373 ~~~~~~n~~l~~~l~Nl~~R~~~~~~k~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~l~~l~~~~N~y  451 (673)
T PRK00133        373 DFQQRVNSELVGKVVNFASRTAGFINKRFDGKLPDALADPELLEEFEAAAEKIAEAY-EAREFRKALREIMALADFANKY  451 (673)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Confidence            421         0    11111              113344566778889999999 7899999999999999999999


Q ss_pred             hcCC
Q psy6851         333 LRGT  336 (948)
Q Consensus       333 Ld~~  336 (948)
                      ++..
T Consensus       452 i~~~  455 (673)
T PRK00133        452 VDDN  455 (673)
T ss_pred             HHhc
Confidence            8753

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=99.43  E-value=3.4e-12  Score=150.27  Aligned_cols=238  Identities=12%  Similarity=0.109  Sum_probs=144.7

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC----C
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD----S  164 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~----~  164 (948)
                      |.+.|+++.++++++++.|.+++.  || .+++++|.|  +|++.++ +++++|+++|++|..++.|||++.-=.    .
T Consensus        61 a~~~g~~~~~~~~~~~~~~~~~~~~l~i-~~d~~~~t~~~~~~~~~~-~~~~~L~~~G~~y~~~~~~~~~~~~~~~l~~~  138 (556)
T PRK12268         61 AKKEGVTPQELADKYHEEHKEDFKKLGI-SYDLFTRTTSPNHHEVVQ-EFFLKLYENGYIYKKTIEQAYCPSDGRFLPDR  138 (556)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHcCC-cCCCCcCCCCHHHHHHHH-HHHHHHHHCCCeEEeeeEEEecCCCCcCcCcc
Confidence            334566666777777777877777  99 579999999  9999999 799999999999999999999974210    0


Q ss_pred             C--C-------CCCcccc--------------------C---C--cccccc-------c-----ccc-------------
Q psy6851         165 Q--P-------NHYYAKL--------------------V---P--EAYGDT-------K-----TLQ-------------  185 (948)
Q Consensus       165 ~--g-------~~~YgKL--------------------~---P--~DFaLW-------K-----~ak-------------  185 (948)
                      +  |       ...||..                    +   |  ..-..|       +     ..+             
T Consensus       139 ~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~~~~~~p~~~~~~~  218 (556)
T PRK12268        139 YVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIESSGDWPPNVLNFT  218 (556)
T ss_pred             ceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHhhccCCCHHHHHHH
Confidence            0  0       0112321                    0   0  000000       0     000             


Q ss_pred             ----C-CCCcC----CCCCCCccc--CCCCC--------------C-------CC-CCc---ceeEe-eccCcccccccc
Q psy6851         186 ----E-GEVRG----YPPWPARIE--GLADE--------------T-------PN-RLK---YHIFF-YGTRETGICRQD  228 (948)
Q Consensus       186 ----~-gEp~w----espWg~~~~--~m~~~--------------~-------~G-RPG---WHIEc-LG~~dih~GG~D  228 (948)
                          . +=+.|    ...||-|++  +-.+.              +       .| .+.   |.  + -|..+.|.-|.|
T Consensus       219 ~~~l~~~l~Dw~ISR~~~WGipiP~~~~~~~~iyvW~da~~~y~~~~~~~~~~~g~~~~~~~~w--~ds~~~~~~~~G~D  296 (556)
T PRK12268        219 LNWLKEGLKPRAITRDLDWGIPVPWPGFEGKVFYVWFDAVIGYISASKEWAERTGDPEAWKEFW--LDPETKSYYFIGKD  296 (556)
T ss_pred             HHHHhCCCCCcCceeeCCCCeeCCCCCCCCcEEEEeehHhhHHHHHHHHHHHhcCCchHHHHHh--CCCCCeEEEEEeec
Confidence                0 00112    234777765  22100              0       00 000   10  0 011135666788


Q ss_pred             ccCCccc-----------------cccccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH-hhcCCChh
Q psy6851         229 ELFPYTE-----------------FKDKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI-RNLKFPAT  279 (948)
Q Consensus       229 L~FPHHE-----------------ne~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy-R~l~~s~~  279 (948)
                      .++-|.-                 +-..+|||.++|+|||||+||+|+..++           |++..+-. +.++|+.+
T Consensus       297 ~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~~~G~KMSKS~GN~I~p~dli~~yGaDalR~~ll~~~~~~~d~~f~~~  376 (556)
T PRK12268        297 NIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLTLEGGKFSKSRGWGIWVDDALERYPPDYLRYYLAANAPENSDTDFTWE  376 (556)
T ss_pred             cCcchHHHHHHHHHhcCCCCCCCCEeeccCCEEECCeeeccCCCcccCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCHH
Confidence            8765532                 1245799999999999999999988765           23112222 22677765


Q ss_pred             hhH---------HH----HhhH-----------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy6851         280 TVS---------SF----EKWT-----------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQV  329 (948)
Q Consensus       280 ~l~---------~~----~r~~-----------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVrai  329 (948)
                      .+.         .+    .|..                 ..+..+...+..+...+..+| ++|++..|+..|+++++.+
T Consensus       377 ~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~l~~~~~~~  455 (556)
T PRK12268        377 EFVRRVNSELADKYGNLVNRVLSFIEKYFGGIVPPGELGDEDRELIAEAEALFKEVGELL-EAGEFKKALEEIMELAREA  455 (556)
T ss_pred             HHHHHHhHHhhhhHHHHHHHHHHHHHHhcCCcCCCCcCCcccHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHH
Confidence            331         11    1110                 112334456677889999999 8899999999999999999


Q ss_pred             HhhhcC
Q psy6851         330 NIYLRG  335 (948)
Q Consensus       330 N~yLd~  335 (948)
                      |.|++.
T Consensus       456 n~yi~~  461 (556)
T PRK12268        456 NKYLDE  461 (556)
T ss_pred             HHHHHc
Confidence            999874

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=99.43  E-value=1.1e-14  Score=161.88  Aligned_cols=56  Identities=11%  Similarity=0.020  Sum_probs=52.3

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccc
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDD  681 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyf  681 (948)
                      +++++|+++|.++|++|||..+   ...|..++|++.|..++.+|.++|+ |..++.|||
T Consensus        84 ~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~~~f~~L~~~G~iY~~~~~v~~  143 (338)
T cd00818          84 EFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVWWVFKQLHEKGLLYRGYKVVPW  143 (338)
T ss_pred             HHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHHHHHHHHHHCCCEeccCCeeee
Confidence            5788999999999999999887   6778888999999999999999999 999999999

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases

Probab=99.40  E-value=2e-12  Score=128.77  Aligned_cols=124  Identities=21%  Similarity=0.227  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcc
Q psy6851         299 IQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTN  378 (948)
Q Consensus       299 ~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss  378 (948)
                      ..+...|.+||+||||||.||++||++++.+|.+++..  ...+..+...+..|+.||||...... .|.... +.....
T Consensus        32 ~~~~~~f~~Al~DDlNt~~Ala~l~~l~k~~n~~~~~~--~~~~~~~~~~l~~~~~vLGl~~~~~~-~~~~~~-~~~~~~  107 (156)
T cd07963          32 EPFAERFIAAMDDDFNTPEALAVLFELAREINRLKKED--IEKAAALAALLKALGGVLGLLQQDPE-AFLQGG-TGEGGL  107 (156)
T ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHhccCCCCCCHH-HHHhcc-cccccc
Confidence            45678999999999999999999999999999988654  22355566778889999999431110 010000 000001


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCCeeeecCCcceEE
Q psy6851         379 LEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIEGKSYIT  438 (948)
Q Consensus       379 ~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~~V~D~hARTyVs  438 (948)
                      ..    ..|+.|++.|.++|+.       |.|..+|++|+.+ ...|+.|.|+..+|.|.
T Consensus       108 ~~----~~v~~Ll~~R~~aR~~-------Kdf~~AD~IRd~L-~~~Gi~i~Dt~~Gt~w~  155 (156)
T cd07963         108 SV----AEIEALIAQRNQARKA-------KDWAEADRIRDEL-AAQGIILEDSPEGTTWR  155 (156)
T ss_pred             CH----HHHHHHHHHHHHHHHh-------cCHHHHHHHHHHH-HHCCcEEEECCCCceee
Confidence            11    1378888887777766       9999999999997 78999999996667663

This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA.

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=99.37  E-value=1.5e-11  Score=147.63  Aligned_cols=241  Identities=14%  Similarity=0.138  Sum_probs=148.8

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeec--cC-CC
Q psy6851          92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVN--AF-DS  164 (948)
Q Consensus        92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~--~f-~~  164 (948)
                      +|.+.|+++.++++.+.+.|.++++  || .++.+.|.|+  |+..+. +++++|.++|++|...-.++|++.  .| ++
T Consensus        60 ~A~~~g~~~~e~~d~~~~~fk~~l~~lgI-~~D~f~rTt~~~h~~~v~-~~~~~L~~kG~IY~~~~~~~yc~~~~~~l~~  137 (648)
T PRK12267         60 AAEKAGKTPQEYVDEISAGFKELWKKLDI-SYDKFIRTTDERHKKVVQ-KIFEKLYEQGDIYKGEYEGWYCVSCETFFTE  137 (648)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHcCC-CCCCCeeCCCHHHHHHHH-HHHHHHHHCCCEEEeeEEEeecCCCCccCCh
Confidence            3445566666777777777777776  99 5799999998  998888 799999999999998778888754  22 11


Q ss_pred             C----CC---------------CCccccCC------------cccccccc----------ccCCCCcC----C-CCCCCc
Q psy6851         165 Q----PN---------------HYYAKLVP------------EAYGDTKT----------LQEGEVRG----Y-PPWPAR  198 (948)
Q Consensus       165 ~----g~---------------~~YgKL~P------------~DFaLWK~----------ak~gEp~w----e-spWg~~  198 (948)
                      .    ++               |-|=+|+.            .+| .|..          .+.|-+.|    . -+||-|
T Consensus       138 ~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~-~~p~~~~~~~~~~~l~~~l~D~~ISR~~~~WGip  216 (648)
T PRK12267        138 SQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDF-IQPESRKNEMINNFIKPGLEDLSISRTSFDWGIP  216 (648)
T ss_pred             HHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcc-cCCHHHHHHHHHHHhhCCCCCcccCCCCCCcceE
Confidence            0    00               00111110            000 0100          01111112    1 258877


Q ss_pred             ccCCCCC--------------CCCCCcceeE-e--eccCccccccccccCCccccc---------------cccccEEEc
Q psy6851         199 IEGLADE--------------TPNRLKYHIF-F--YGTRETGICRQDELFPYTEFK---------------DKYGKVRVH  246 (948)
Q Consensus       199 ~~~m~~~--------------~~GRPGWHIE-c--LG~~dih~GG~DL~FPHHEne---------------~h~G~l~i~  246 (948)
                      .|+.+..              +-|.|...-+ +  +=+.++|.-|.|.++-|--..               ..+|||.++
T Consensus       217 vP~~~~~v~yVWfDA~~~y~s~~~~~~~~~~~~~~~wp~~~~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~~e  296 (648)
T PRK12267        217 VPFDPKHVVYVWIDALLNYITALGYGSDDDELFKKFWPADVHLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWLMK  296 (648)
T ss_pred             CCCCCCCEEEEcccchHHHHHHcCCCCCCchHHHhhcccceEEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEEEC
Confidence            6543210              1122210000 0  002267888999987554321               347999999


Q ss_pred             ccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhH-------------HHHhhH-------------
Q psy6851         247 LSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVS-------------SFEKWT-------------  288 (948)
Q Consensus       247 geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~-------------~~~r~~-------------  288 (948)
                      |+|||||+||+|+..++           |++....+.+ .+|+.+.+.             .+.|..             
T Consensus       297 g~KMSKS~GN~i~p~d~l~~ygaD~lR~~L~~~~~~~~D~~fs~~~~~~~~n~~l~~~lgNl~~R~~~~~~~~~~~~~p~  376 (648)
T PRK12267        297 DGKMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEALVERINSDLANDLGNLLNRTVAMINKYFDGEIPA  376 (648)
T ss_pred             CceecccCCcccCHHHHHHHcCCcHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcCCC
Confidence            99999999999987764           3322233444 778776531             012211             


Q ss_pred             -----HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         289 -----QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       289 -----~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                           ..+..+...+..+..++..+| ++|+++.|+..|+++++.+|.|++..
T Consensus       377 ~~~~~~~D~~ll~~l~~~~~~v~~~~-e~~~~~~al~~i~~~~~~~N~Yi~~~  428 (648)
T PRK12267        377 PGNVTEFDEELIALAEETLKNYEELM-EELQFSRALEEVWKLISRANKYIDET  428 (648)
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHHhC
Confidence                 112334556778889999999 78999999999999999999999754

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=99.33  E-value=9.8e-13  Score=137.40  Aligned_cols=58  Identities=12%  Similarity=-0.037  Sum_probs=54.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      ++..+.+.|.+++++|||. ++.++|.|++++.|+++|+.|+++|+ |+.+|.+||++++
T Consensus        66 ~~~~~~~~~~~~~~~L~i~-~d~~~~es~~~~~~~~~i~~L~~~g~~~~~~g~~~~~~~~  124 (212)
T cd00671          66 LVEESIKADLETYGRLDVR-FDVWFGESSYLGLMGKVVELLEELGLLYEEDGALWLDLTE  124 (212)
T ss_pred             HHHHHHHHHHHHHHHhCCc-CceecchhhhhhHHHHHHHHHHHCCCEEEeCCcEEEechh
Confidence            5678999999999999999 69999999999999999999999999 9999999999876

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>PLN02224 methionine-tRNA ligase

Probab=99.32  E-value=1.8e-12  Score=154.37  Aligned_cols=59  Identities=8%  Similarity=-0.033  Sum_probs=54.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      +++.|.+.|.+.+++||| .+|.++|+|+  |...+..+..+|.++|+ |.....+||+++++
T Consensus       136 ~~~~~~~~~~~~~~~l~I-~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~ce  197 (616)
T PLN02224        136 HCDIISQSYRTLWKDLDI-AYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLYCVNCE  197 (616)
T ss_pred             HHHHHHHHHHHHHHHcCC-CCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeeecCCCC
Confidence            567899999999999999 5699999998  99999999999999999 99999999999885

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases

Probab=99.27  E-value=3.1e-12  Score=141.08  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=105.4

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHH----HHHHcCCeeeeCCcEEEeeccCCCCC
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIE----KIIANGLAYESNGSVYFNVNAFDSQP  166 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~----~LI~~G~AYes~GsVYFDv~~f~~~g  166 (948)
                      |.+.|++..++++.+.+.|.+++.  || .++..++++.++|+++ ++|+    +|.++|++|...+.|||++..-    
T Consensus        57 a~~~g~~~~e~~~~~~~~~~~~~~~lgi-~~d~~~~~~t~~~~~~-~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~----  130 (314)
T cd00812          57 AIKIGRDPEDWTEYNIKKMKEQLKRMGF-SYDWRREFTTCDPEYY-KFTQWLFLKLYEKGLAYKKEAPVNWCKLLD----  130 (314)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHhcc-ceecccccccCCHHHH-HHHHHHHHHHHHCCCEEecCceeeeeCccc----
Confidence            344567777777777788887777  98 5677788888899999 6887    9999999999999999995431    


Q ss_pred             CCCccccC------------------C----ccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEee-------
Q psy6851         167 NHYYAKLV------------------P----EAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFY-------  217 (948)
Q Consensus       167 ~~~YgKL~------------------P----~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcL-------  217 (948)
                       |-|=+|+                  |    ..+..|-.     .+=...||.|.|       +  +|+|+|.       
T Consensus       131 -~~f~~l~~~~~~~~l~~~l~~~~~~p~~~~~~~~~~l~-----isR~~~wGipvP-------~--~~~i~~w~ds~~y~  195 (314)
T cd00812         131 -QWFLKYSETEWKEKLLKDLEKLDGWPEEVRAMQENWIG-----CSRQRYWGTPIP-------W--TDTMESLSDSTWYY  195 (314)
T ss_pred             -eEEEEcCcHHHHHHHHHHHHhcCcCCHHHHHHHHHHhe-----eeeecCCcCCcC-------c--ccccccccccHHHH
Confidence             1122221                  1    00111111     112346776542       1  5666650       


Q ss_pred             ---------------------------ccCccccccccccCCccccc---------------------cccccEEEcccc
Q psy6851         218 ---------------------------GTRETGICRQDELFPYTEFK---------------------DKYGKVRVHLSQ  249 (948)
Q Consensus       218 ---------------------------G~~dih~GG~DL~FPHHEne---------------------~h~G~l~i~geK  249 (948)
                                                 .+.|+|++|.|++++|+.+.                     .++|+|+++|+|
T Consensus       196 ~~y~~~~~~~~~~~~~~~~~~~~~~~w~p~di~v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~~~g~K  275 (314)
T cd00812         196 ARYTDAHNLEQPYEGDLEFDREEFEYWYPVDIYIGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVLLEGEK  275 (314)
T ss_pred             HHHHhcccccCcchhhhhhhHHHHHHhCCCeeeecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEecCccc
Confidence                                       01268899999999996321                     257889999999


Q ss_pred             hhhcchhHHHHHHHHH
Q psy6851         250 KQQSLKLVVIMKEFFL  265 (948)
Q Consensus       250 MSKSLGN~vti~ef~l  265 (948)
                      ||||+||+|++.+++.
T Consensus       276 mSkS~Gn~v~~~dll~  291 (314)
T cd00812         276 MSKSKGNVVTPDEAIK  291 (314)
T ss_pred             cCCcCCCCCCHHHHHH
Confidence            9999999999998864

Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK01611 argS arginyl-tRNA synthetase; Reviewed

Probab=99.26  E-value=3.7e-11  Score=140.60  Aligned_cols=233  Identities=14%  Similarity=0.179  Sum_probs=159.0

Q ss_pred             ChHHHHHHHHHHHHHHhc--CCCCCCcccccccc--HHHHHHHHHHHHHHcCCee-eeCCcEEEeeccCCCCCCCCcccc
Q psy6851          99 PPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEY--IPEIVASYIEKIIANGLAY-ESNGSVYFNVNAFDSQPNHYYAKL  173 (948)
Q Consensus        99 ~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~--IpeII~~~I~~LI~~G~AY-es~GsVYFDv~~f~~~g~~~YgKL  173 (948)
                      .|+++.+.+.+.|.+++.  ||.. +.+++.+++  .+.+. +++++|.++|++| +.+|+||||+..|.+         
T Consensus       174 ~~~~~~~~~~~~~~~~l~~LgI~~-D~~~~es~~~~~~~~~-~~~~~L~~~G~~y~~~~Ga~~~~~~~~~~---------  242 (507)
T PRK01611        174 LWRKAVDISLDEIKEDLDRLGVHF-DVWFSESELYYNGKVD-EVVEDLKEKGLLYVESDGALWVRLTEFGD---------  242 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCee-eEEeecCcchhcchHH-HHHHHHHHCCCEEEeeCCcEEEEchhhCC---------
Confidence            566777777778887777  9865 777887865  46788 7999999999999 999999999988753         


Q ss_pred             CCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeec---cC-ccccccccccCCcccc-------------
Q psy6851         174 VPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYG---TR-ETGICRQDELFPYTEF-------------  236 (948)
Q Consensus       174 ~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG---~~-dih~GG~DL~FPHHEn-------------  236 (948)
                       +.|+.+||.  +|.    +-|..          -.++||++|+-   .- ++.+.++++-|+++.-             
T Consensus       243 -~~~~vl~ks--dG~----~~Y~t----------~Dia~~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~  305 (507)
T PRK01611        243 -DKDRVLIKS--DGT----YTYFT----------RDIAYHLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALE  305 (507)
T ss_pred             -CCCeEEEEC--CCC----ccchH----------HHHHHHHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcccce
Confidence             237999998  443    45554          35788888753   22 5677788888887651             


Q ss_pred             -ccc--cccEEE-cccchhhcchhHHHHHHHHHH-HHH--------------------------HHhh-cCCChhhhH--
Q psy6851         237 -KDK--YGKVRV-HLSQKQQSLKLVVIMKEFFLN-VKD--------------------------HIRN-LKFPATTVS--  282 (948)
Q Consensus       237 -e~h--~G~l~i-~geKMSKSLGN~vti~ef~l~-ls~--------------------------hyR~-l~~s~~~l~--  282 (948)
                       ..|  +|++.- +|.|||||.||++++.|++.. ...                          ...+ +.|+++.+.  
T Consensus       306 ~~~h~~~glv~~~~g~KMSkR~Gn~i~l~dll~~a~g~~~~~~~~~~~a~~vgidAiR~~~L~~~~~~~~~Fd~~~~~~~  385 (507)
T PRK01611        306 VLLHQMVGLVRGGEGVKMSTRAGNVVTLDDLLDEAVGRARELIEEKEIAEAVGIDAVRYFDLSRSRDKDLDFDLDLALSF  385 (507)
T ss_pred             EEEEEEEEeeECCCCCcccCCCCceeEHHHHHHHHHHHHHHHHHhhhhhhhhccceeEehhhhcCCCCCCccCHHHHHhh
Confidence             122  233332 467999999999988877643 221                          1222 556554321  


Q ss_pred             ----------HHHhhH--------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhh
Q psy6851         283 ----------SFEKWT--------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIY  332 (948)
Q Consensus       283 ----------~~~r~~--------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~y  332 (948)
                                +..|..                    ..+..|...+..+.+.+..|+ +++....+...|++|+...|.+
T Consensus       386 ~~~~~~yvqYa~aR~~sil~k~~~~~~~~~~~~l~~~~e~~Ll~~L~~~~~~v~~a~-~~~~p~~l~~yl~~la~~f~~f  464 (507)
T PRK01611        386 EGNNPPYVQYAHARICSILRKAAEAGIDLLLALLTEEEEKELIKKLAEFPEVVESAA-EELEPHRIANYLYELAGAFHSF  464 (507)
T ss_pred             cCCCcHHHHHHHHHHHHHHHhhhccCccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHH
Confidence                      111211                    112334456677889999999 7899999999999999999886


Q ss_pred             hcC-----CCC------HHHHHHHHHHHHHHHhHccccc
Q psy6851         333 LRG-----TPN------QLLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       333 Ld~-----~~~------~~lL~~i~~~V~~mL~VLGL~~  360 (948)
                      -+.     ...      ..++..+...+..-|.+|||..
T Consensus       465 Y~~~~l~~~~~~~~~~Rl~L~~a~~~vl~~~l~lLgi~~  503 (507)
T PRK01611        465 YNRVLLKDEEEELRNARLALVKATAQVLKNGLDLLGISA  503 (507)
T ss_pred             HHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            541     111      1234455556777788999854

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=99.25  E-value=1.9e-12  Score=146.35  Aligned_cols=62  Identities=2%  Similarity=-0.150  Sum_probs=50.0

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCC-Ceeecc--cccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         625 ATLPKHWEAEFHKDMADLNVLPP-TVLTRV--SEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       625 ~~~~~~~~~~f~~dm~~L~v~~p-~~~~rv--se~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      .+++++|.++|.++|++|||.-- +...++  .+|+..+..++.+|.++|+ |.....|||+..++
T Consensus        82 ~~~~~~~~~~~~~~~~~lgi~~Dw~~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~  147 (382)
T cd00817          82 WEWKEESGGKIREQLKRLGASVDWSREYFTMDPGLSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLR  147 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCceeecCCCcCCCCHHHHHHHHHHHHHHHHCCCEEeeeeEEeecCCcC
Confidence            45788999999999999999741 122222  3477888888999999999 99999999999883

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=99.22  E-value=2.8e-12  Score=150.74  Aligned_cols=76  Identities=25%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             cCCCC--CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCC---CCChhHHHHHhccC--
Q psy6851         787 EKRSP--NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF---PHHDNELAQAEGLP--  859 (948)
Q Consensus       787 ~K~~~--~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~F---PHH~ne~aq~e~~~--  859 (948)
                      ...||  .||++|+..+...|.    ||.|++||++       -.|+..+|.|..||++++   +|++|...|...+.  
T Consensus       251 ~~~n~~~rD~v~~R~~~~~h~~----~Gd~~~i~Pt-------Y~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~L  319 (567)
T PRK04156        251 EHPNPSVRDWVAFRIVKTPHPR----VGDKYRVWPT-------YNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYF  319 (567)
T ss_pred             cCCCCCccccEEEEEcCCCccc----cCCCeEEEEE-------eccCceeeecCCCCCeEEcccccccChHHHHHHHHHc
Confidence            34555  899999986655554    9999999976       489999999999999999   99999999998653  


Q ss_pred             CCC-----------CCCccccchhh
Q psy6851         860 THD-----------QEGKELSKGLA  873 (948)
Q Consensus       860 ~~~-----------~~g~kmsKsl~  873 (948)
                      |..           ++|.|||||..
T Consensus       320 g~~~P~~~H~~~L~~~g~kLSKR~~  344 (567)
T PRK04156        320 GWEYPETIHYGRLKIEGFVLSTSKI  344 (567)
T ss_pred             CCCCceEEEcceecCCCceeecccc
Confidence            322           78999999983

>TIGR00398 metG methionyl-tRNA synthetase

Probab=99.17  E-value=1.8e-11  Score=143.48  Aligned_cols=59  Identities=19%  Similarity=0.097  Sum_probs=54.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      +++.|.+.|.+++++|||. ++.++|+++  |++.|..++++|.++|+ |..++.|||++..+
T Consensus        66 ~~~~~~~~~~~~l~~LgI~-~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~~~~~~~  127 (530)
T TIGR00398        66 LVDKYHEEFKDDWKWLNIS-FDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQLYCPECE  127 (530)
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEEecCCCC
Confidence            5678999999999999997 688889888  99999999999999999 99999999999874

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=99.16  E-value=2.8e-11  Score=118.47  Aligned_cols=54  Identities=20%  Similarity=0.179  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-----------C-CCccccchh
Q psy6851         818 WHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-----------Q-EGKELSKGL  872 (948)
Q Consensus       818 WHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-----------~-~g~kmsKsl  872 (948)
                      ||++|++|+..+++..+|||.||.|+.+ ||++..++++++.+..           . +|.|||||+
T Consensus        78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~  143 (143)
T cd00802          78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK  143 (143)
T ss_pred             HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence            9999999999999999999999999999 9999999999975432           2 569999995

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK12268 methionyl-tRNA synthetase; Reviewed

Probab=99.14  E-value=3.5e-11  Score=141.81  Aligned_cols=59  Identities=14%  Similarity=0.080  Sum_probs=55.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.++|++|||. ++.++|++  +|++.+++++++|.++|+ |..++.|||++.++
T Consensus        71 ~~~~~~~~~~~~~~~l~i~-~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~~~~~~  132 (556)
T PRK12268         71 LADKYHEEHKEDFKKLGIS-YDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAYCPSDG  132 (556)
T ss_pred             HHHHHHHHHHHHHHHcCCc-CCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEecCCCC
Confidence            5789999999999999995 79999999  899999999999999999 99999999999874

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=99.07  E-value=3e-10  Score=141.62  Aligned_cols=114  Identities=18%  Similarity=0.207  Sum_probs=87.3

Q ss_pred             ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |+|++|.|++|+||.++                 .|+|||.++|+|||||+||++++.++           |++-.++|+
T Consensus       575 D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNvI~p~d~i~~yGaDalRl~Ll~~~~~~  654 (938)
T TIGR00395       575 DWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNVLTLEQAVEKFGADVARLYIADAAETV  654 (938)
T ss_pred             eEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            79999999999999853                 46899999999999999999987754           342334788


Q ss_pred             h-cCCChhhhHH----HHhhHH-------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHH-HHHHHHHH
Q psy6851         273 N-LKFPATTVSS----FEKWTQ-------------------ADLELSTRFIQTKNNVHAALCDNMDTRSAL-DSIRDCIS  327 (948)
Q Consensus       273 ~-l~~s~~~l~~----~~r~~~-------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~AL-aaLfeLVr  327 (948)
                      + ++|+++.+..    +.++..                   .+..+...+..+...+.++| ++|+++.|+ ..++++++
T Consensus       655 ~D~~fs~~~~~~~~~~l~~l~n~~~~~~~~~~~~~~~~~~~~D~wlls~l~~~i~~v~~a~-e~~~~~~Al~~~l~~~~~  733 (938)
T TIGR00395       655 QDADWKESEVEGTILRLERLYEFAEEITKESNLETGEETSFIDRWLESRMNAAIKETYEAM-ENFQTRKAVKYALFDLQA  733 (938)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccCChHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Confidence            8 9999876541    111111                   11223345567789999999 699999999 88999999


Q ss_pred             HHHhhhcC
Q psy6851         328 QVNIYLRG  335 (948)
Q Consensus       328 aiN~yLd~  335 (948)
                      .+|-|+..
T Consensus       734 ~~n~Yl~~  741 (938)
T TIGR00395       734 DVDWYRRR  741 (938)
T ss_pred             HHHHHHHh
Confidence            99999874

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=99.01  E-value=2.5e-08  Score=117.84  Aligned_cols=237  Identities=17%  Similarity=0.172  Sum_probs=147.1

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC--
Q psy6851          90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD--  163 (948)
Q Consensus        90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~--  163 (948)
                      +.+|.+.|++++++.+++.+.|.++.+  ||. =|.+.|-|+  |..-.- ++.++|.+||+-|...-.++|+++.=.  
T Consensus        59 ~~~A~~~g~tP~el~d~~~~~~~~~~~~l~Is-fD~F~rTt~~~h~~~vq-~~f~~L~~~G~I~~~~~~~~Yc~~~e~fl  136 (558)
T COG0143          59 ELKAEKEGITPQELVDKNHEEFKELFKALNIS-FDNFIRTTSPEHKELVQ-EFFLKLYENGDIYLREYEGLYCVSCERFL  136 (558)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCc-ccccccCCCHHHHHHHH-HHHHHHHHCCCEeccceeeeEcccccccc
Confidence            445567789999999888888887776  663 355655553  555454 789999999999998778899876422  


Q ss_pred             -CC---CCCCcc---------------ccCCccc---------------------------cc----ccccc--------
Q psy6851         164 -SQ---PNHYYA---------------KLVPEAY---------------------------GD----TKTLQ--------  185 (948)
Q Consensus       164 -~~---g~~~Yg---------------KL~P~DF---------------------------aL----WK~ak--------  185 (948)
                       +.   |.-.|.               .++|.+.                           ..    |=...        
T Consensus       137 ~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~~~~~~~p~~  216 (558)
T COG0143         137 PDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYESNPDFIWPAN  216 (558)
T ss_pred             cchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHhCccccCChH
Confidence             11   000111               1333221                           00    10000        


Q ss_pred             ----------CCCC-----cCCCCCCCcccCCCCCCCCCCcceeEe-----------e------ccC---------c---
Q psy6851         186 ----------EGEV-----RGYPPWPARIEGLADETPNRLKYHIFF-----------Y------GTR---------E---  221 (948)
Q Consensus       186 ----------~gEp-----~wespWg~~~~~m~~~~~GRPGWHIEc-----------L------G~~---------d---  221 (948)
                                .|=-     +-...||-|++       |-||=-|-.           +      |..         +   
T Consensus       217 ~~ne~~~~i~~GL~d~~IsR~~~~WGipvP-------~~p~kv~YVWfDAligYisa~~~~~~~~~~~~~~~~W~~~~~e  289 (558)
T COG0143         217 RRNEVLNFLKEGLKDLSITRTDLDWGIPVP-------GDPGKVIYVWFDALIGYISALGELAEIGDDEDFKKFWPADDTE  289 (558)
T ss_pred             HHHHHHHHHHccCcccceecCCCCCCccCC-------CCCCCEEEEeeccHHHHHHHhcchhccCChHHHHhhCCCCCce
Confidence                      1100     12456887775       334422210           1      110         1   


Q ss_pred             -cccccccccCCccccc---------------cccccEEEcccchhhcchhHHHHHHHHHHH-HHHHh----------h-
Q psy6851         222 -TGICRQDELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEFFLNV-KDHIR----------N-  273 (948)
Q Consensus       222 -ih~GG~DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef~l~l-s~hyR----------~-  273 (948)
                       +|.-|-|-+..|-=..               ..+|+|+++|+|||||+||+|...+++..+ .+.+|          + 
T Consensus       290 ~vhfIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G~KmSKSrG~~V~~~~~~~~~~~D~lRYyL~~~~p~~~D  369 (558)
T COG0143         290 LVHFIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEGQKMSKSRGNVVDPDELLEQYGVDALRYYLARELPEGSD  369 (558)
T ss_pred             EEEEeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECCccccccCCcEEeHHHHHHHcCchHhHHHHHHhCCCCCC
Confidence             6888899987775432               347899999999999999999877653210 11111          1 


Q ss_pred             cCCChhhhH---------H----HHhhH-------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851         274 LKFPATTVS---------S----FEKWT-------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDS  321 (948)
Q Consensus       274 l~~s~~~l~---------~----~~r~~-------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa  321 (948)
                      .+||.+.+.         .    +.|.-                   ..+.++...+.++...+.++| +.+.+.+|+..
T Consensus       370 ~dFs~~~f~~rvN~dL~n~lgNl~~R~~~fi~k~~~g~vp~~~~~~~~~d~~~~~~~~~~~~~~~~~~-e~~~~~~Al~~  448 (558)
T COG0143         370 GDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPAAGAPDLEEDEELLALAREALEAVAEAM-EKYEFRKALEE  448 (558)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccccccchhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence            566654321         0    01100                   123445566677889999999 89999999999


Q ss_pred             HHHHHHHHHhhhcCC
Q psy6851         322 IRDCISQVNIYLRGT  336 (948)
Q Consensus       322 LfeLVraiN~yLd~~  336 (948)
                      |++|++.+|+|+++.
T Consensus       449 i~~l~~~~N~Yi~~~  463 (558)
T COG0143         449 IMALASRANKYIDEQ  463 (558)
T ss_pred             HHHHHHHHHHHhhcC
Confidence            999999999999875

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=98.93  E-value=6.8e-10  Score=134.12  Aligned_cols=59  Identities=14%  Similarity=0.014  Sum_probs=54.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.++|++|||. ++.++|++  +|+..|+.++++|.++|+ |...+.|||+++++
T Consensus        69 ~~~~~~~~~~~~~~~l~i~-~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~  130 (673)
T PRK00133         69 LIARYHAEHKRDFAGFGIS-FDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQLYDPEKG  130 (673)
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEEEeCCCC
Confidence            5679999999999999998 57888998  599999999999999999 99999999999885

>PLN02610 probable methionyl-tRNA synthetase

Probab=98.87  E-value=5.6e-08  Score=119.58  Aligned_cols=72  Identities=14%  Similarity=0.130  Sum_probs=55.2

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851          87 AAQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVN  160 (948)
Q Consensus        87 ~~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~  160 (948)
                      ..-+.+|.+.|+++++++.++.+.|.+++.  ||. .+.+.|-|  +|..-+- .+..+|.++|+-|...-.++|++.
T Consensus        69 ~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~-~D~f~rT~~~~h~~~vq-~~f~~L~~~G~Iy~~~~~~~yc~~  144 (801)
T PLN02610         69 TATETKALEENCTPKEICDKYHAIHKEVYDWFDIS-FDKFGRTSTPQQTEICQ-AIFKKLMENNWLSENTMQQLYCDT  144 (801)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCc-cccCccCCCHHHHHHHH-HHHHHHHHCCCEEEeeEEEeecCC
Confidence            334455667799999999999988887776  764 46665544  4666666 799999999999998888999865

>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6

Probab=98.85  E-value=4.3e-09  Score=90.53  Aligned_cols=57  Identities=23%  Similarity=0.381  Sum_probs=45.1

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHcccccc
Q psy6851         304 NVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGD  361 (948)
Q Consensus       304 ~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~  361 (948)
                      +|.+||+||||||.||++||++++.+|+..... +...+..+...++.+..||||...
T Consensus         1 ~F~~AmdDDfNT~~Ala~lf~l~~~~N~~~~~~-~~~~~~~~~~~l~~~~~vLGl~~~   57 (63)
T PF09190_consen    1 EFIEAMDDDFNTPEALAALFELVKEINRALESN-DKEDLEALAAALRKLLDVLGLLQE   57 (63)
T ss_dssp             HHHHHHCBTS-HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCCT-S-S
T ss_pred             ChHHHHhHhcCcHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHhcCcCCCC
Confidence            589999999999999999999999999944433 445566778899999999999643

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This DALR domain is found in cysteinyl-tRNA-synthetases []. ; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1LI5_B 1LI7_B 1U0B_B 3TQO_A.

>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases

Probab=98.79  E-value=1e-08  Score=85.27  Aligned_cols=55  Identities=20%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHccc
Q psy6851         304 NVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGC  358 (948)
Q Consensus       304 ~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL  358 (948)
                      +|++||+||||||.|+++|+++++.+|+++........+..+..+++.|+++||+
T Consensus         1 ~f~~al~DD~NT~~Al~~l~~l~~~~N~~l~~~~~~~~~~~~~~~~~~~~~ilGl   55 (56)
T smart00840        1 RFEEAMDDDFNTPEALAVLFELAREINRLLLKAVDAEELAALAALLRALGGVLGL   55 (56)
T ss_pred             ChHHHhhcccCcHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhccCC
Confidence            3899999999999999999999999999986443334466788889999999997

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=98.77  E-value=6.2e-09  Score=125.36  Aligned_cols=59  Identities=14%  Similarity=0.005  Sum_probs=53.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.++|++|||. +|.+.|+|+  |+..+..++++|.++|+ |.....++|+.+.+
T Consensus        71 ~~d~~~~~fk~~l~~lgI~-~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~yc~~~~  132 (648)
T PRK12267         71 YVDEISAGFKELWKKLDIS-YDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGWYCVSCE  132 (648)
T ss_pred             HHHHHHHHHHHHHHHcCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCC
Confidence            4678999999999999995 699999998  99999999999999999 99888889998874

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=98.75  E-value=2.1e-08  Score=124.90  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=85.4

Q ss_pred             ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |+|++|.|++++|+-+.                 .++|||..+|+|||||+||+++..++           |+...+.+.
T Consensus       532 D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNvVdp~eii~~yGaDalRl~L~~~~~~~  611 (897)
T PRK12300        532 DWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNVIPLRKAIEEYGADVVRLYLTSSAELL  611 (897)
T ss_pred             eEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCCCCHHHHHHHcChHHHHHHHHhCCCCC
Confidence            78899999999986642                 45799999999999999999987654           342234566


Q ss_pred             h-cCCChhhhHH----HHhhHH----------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHH-HHHHHHH
Q psy6851         273 N-LKFPATTVSS----FEKWTQ----------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR-DCISQVN  330 (948)
Q Consensus       273 ~-l~~s~~~l~~----~~r~~~----------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLf-eLVraiN  330 (948)
                      + ++|+++.+..    +.|+..                .+.-+...+..+...+..+| ++|++..|+.+++ .+++.+|
T Consensus       612 ~D~~fs~~~v~~~~~~l~r~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~~~~~~A~~~i~~~l~~~~n  690 (897)
T PRK12300        612 QDADWREKEVESVRRQLERFYELAKELIEIGGEEELRFIDKWLLSRLNRIIKETTEAM-ESFQTRDAVQEAFYELLNDLR  690 (897)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCccccCHhHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence            6 8888876542    222221                12234455677889999999 7999999998775 7889999


Q ss_pred             hhhcCC
Q psy6851         331 IYLRGT  336 (948)
Q Consensus       331 ~yLd~~  336 (948)
                      .|++..
T Consensus       691 ~Yi~~~  696 (897)
T PRK12300        691 WYLRRV  696 (897)
T ss_pred             HHHHhc
Confidence            999754

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases

Probab=98.73  E-value=5.6e-09  Score=116.64  Aligned_cols=60  Identities=17%  Similarity=0.110  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHHHHHHhc--CCCCC---CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851         100 PSEMFKMETDKYSQFDE--TVLPP---TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN  160 (948)
Q Consensus       100 ~~el~~~~~~~f~~dm~--nV~~P---~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~  160 (948)
                      ..++++++++.|.+++.  ||..+   .+.|+.++|++.+. +++.+|+++|++|..++.|||-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~lgi~~~~~~~~~T~~~~~~~~v~-~~f~~L~~~G~iY~~~~~v~~~v~  146 (338)
T cd00818          82 CREFALRYVDEQEEQFQRLGVWVDWENPYKTMDPEYMESVW-WVFKQLHEKGLLYRGYKVVPWPLI  146 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHhCceecCCCCeECCCHHHHHHHH-HHHHHHHHCCCEeccCCeeeeEEE
Confidence            44555666666666665  99887   67788889999999 799999999999999999999543

Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional

Probab=98.58  E-value=2.2e-07  Score=110.15  Aligned_cols=129  Identities=12%  Similarity=0.122  Sum_probs=90.5

Q ss_pred             HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee--CCcEEEeeccCCCCC--C-CC----------
Q psy6851         107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES--NGSVYFNVNAFDSQP--N-HY----------  169 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes--~GsVYFDv~~f~~~g--~-~~----------  169 (948)
                      +.+++.++++  |+ .|+..++.|+|++.+. +++++||++|+||.-  ++.. |  +.+..++  + ++          
T Consensus       154 ~~~~I~edL~wLGl-~wD~~~~qSdr~~~y~-~~a~~Li~~G~AY~C~cs~ee-~--~~~r~~g~~~~~R~~~~ee~l~~  228 (567)
T PRK04156        154 AYDMILEDLKWLGV-KWDEVVIQSDRLEIYY-EYARKLIEMGGAYVCTCDPEE-F--KELRDAGKPCPHRDKSPEENLEL  228 (567)
T ss_pred             HHHHHHHHHHHcCC-CCCCccCcccCHHHHH-HHHHHHHHcCCCccCCCCHHH-H--HHHHhcCCCCCCcCCCHHHHHHH
Confidence            4567777777  98 6789999999999999 799999999999972  2222 1  1221111  0 00          


Q ss_pred             ---------------------ccccCC--ccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccC-ccccc
Q psy6851         170 ---------------------YAKLVP--EAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ETGIC  225 (948)
Q Consensus       170 ---------------------YgKL~P--~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~-dih~G  225 (948)
                                           ....+|  +||++|+......    +-||          .++++|++-.|+.. |.|..
T Consensus       229 ~e~m~~G~~~~g~~vlR~k~d~~~~n~~~rD~v~~R~~~~~h----~~~G----------d~~~i~PtY~fA~~VDD~l~  294 (567)
T PRK04156        229 WEKMLDGEYKEGEAVVRVKTDLEHPNPSVRDWVAFRIVKTPH----PRVG----------DKYRVWPTYNFAVAVDDHLL  294 (567)
T ss_pred             HHHhhcCccccCCeEEEEECcccCCCCCccccEEEEEcCCCc----cccC----------CCeEEEEEeccCceeeecCC
Confidence                                 001112  4555555432222    2355          48899999778877 89999


Q ss_pred             cccccC---Cccccc-----------------cccccEEEcccchhhcc
Q psy6851         226 RQDELF---PYTEFK-----------------DKYGKVRVHLSQKQQSL  254 (948)
Q Consensus       226 G~DL~F---PHHEne-----------------~h~G~l~i~geKMSKSL  254 (948)
                      |+++++   +|++|.                 .|+|.|+++|.|||||.
T Consensus       295 GITHViRg~d~~~~t~~Q~~l~~~Lg~~~P~~~H~~~L~~~g~kLSKR~  343 (567)
T PRK04156        295 GVTHVLRGKDHIDNTEKQRYIYDYFGWEYPETIHYGRLKIEGFVLSTSK  343 (567)
T ss_pred             CCCeEEcccccccChHHHHHHHHHcCCCCceEEEcceecCCCceeeccc
Confidence            999999   999974                 57888999999999998

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases

Probab=98.50  E-value=9.2e-08  Score=108.66  Aligned_cols=45  Identities=18%  Similarity=0.047  Sum_probs=37.8

Q ss_pred             ccccccccccCCccccc----------------cccccEE-EcccchhhcchhHHHHHHHHH
Q psy6851         221 ETGICRQDELFPYTEFK----------------DKYGKVR-VHLSQKQQSLKLVVIMKEFFL  265 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------~h~G~l~-i~geKMSKSLGN~vti~ef~l  265 (948)
                      |+|++|.|++++||.+.                ..+|+|. ++|+|||||+||+|++.+++.
T Consensus       298 d~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g~KMSKS~Gn~v~~~dll~  359 (382)
T cd00817         298 SLLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDGRKMSKSLGNVIDPLDVID  359 (382)
T ss_pred             CeeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCCCCccccCCCCCCHHHHHH
Confidence            79999999999999874                1245666 689999999999999988764

Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.

>KOG0436|consensus

Probab=98.45  E-value=7e-06  Score=92.91  Aligned_cols=258  Identities=16%  Similarity=0.163  Sum_probs=147.1

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeec-------
Q psy6851          92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVN-------  160 (948)
Q Consensus        92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~-------  160 (948)
                      +|+-.|.++.++..+....|.++..  || .=|...|-|+  |+..+. +|-..+..||+-|-.+-.=+|-|+       
T Consensus        95 aaatnG~~P~e~cDr~s~~f~qL~k~~gi-~yt~FIRTTdpkH~a~Vq-efw~~~~knG~iy~g~~eGwYcvsdEtf~pE  172 (578)
T KOG0436|consen   95 AAATNGRNPPELCDRISQSFRQLWKDAGI-AYTKFIRTTDPKHEAIVQ-EFWARVFKNGDIYRGDYEGWYCVSDETFYPE  172 (578)
T ss_pred             hHhhcCCChHHHHhhhhHHHHHHHHHhCc-chhheeecCCchHHHHHH-HHHHHHHhCCceeeecccceEeccccccCCH
Confidence            3456799999999999999987765  65 3366667665  777777 799999999999964321233332       


Q ss_pred             -cCCCCCCCCcccc--------------CCcccccccc---------------------------ccCCCC-------cC
Q psy6851         161 -AFDSQPNHYYAKL--------------VPEAYGDTKT---------------------------LQEGEV-------RG  191 (948)
Q Consensus       161 -~f~~~g~~~YgKL--------------~P~DFaLWK~---------------------------ak~gEp-------~w  191 (948)
                       +.-.... .-||.              ...=|.|=|-                           .+.|=|       +-
T Consensus       173 skv~k~p~-~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpDlSISRpsa  251 (578)
T KOG0436|consen  173 SKVLKNPC-PPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPDLSISRPSA  251 (578)
T ss_pred             HHHhcCCC-CCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCcccccChhh
Confidence             1111000 01111              1111221111                           111111       12


Q ss_pred             CCCCCCcccCCCCCCCCCCcceeEe--------------------------eccC-ccccccccccCCccccc-------
Q psy6851         192 YPPWPARIEGLADETPNRLKYHIFF--------------------------YGTR-ETGICRQDELFPYTEFK-------  237 (948)
Q Consensus       192 espWg~~~~~m~~~~~GRPGWHIEc--------------------------LG~~-dih~GG~DL~FPHHEne-------  237 (948)
                      .-.||.|.++       -+.--|-.                          +|=. .+|+-|-|.+-=|.=+.       
T Consensus       252 rl~WGIPvP~-------ddsQtIYVWfDAL~nYiSvig~~~~~~N~k~~ls~~wPat~HvIGKDIlrFHavYWPafLmaA  324 (578)
T KOG0436|consen  252 RLDWGIPVPG-------DDSQTIYVWFDALLNYISVIGYPNKQQNLKTALSFGWPATLHVIGKDILRFHAVYWPAFLMAA  324 (578)
T ss_pred             hcccCCCCCC-------CCcceEEEeHHHHhhHHHhhcCCchhccccceeecCCCceeeehhhhhhhhhhhhhHHHHHhc
Confidence            2357776543       23333321                          1211 46777888765565543       


Q ss_pred             --------cccccEEEcccchhhcchhHHH----HHHH-------HHHHHHHHhh-cCCChhhhH-------------HH
Q psy6851         238 --------DKYGKVRVHLSQKQQSLKLVVI----MKEF-------FLNVKDHIRN-LKFPATTVS-------------SF  284 (948)
Q Consensus       238 --------~h~G~l~i~geKMSKSLGN~vt----i~ef-------~l~ls~hyR~-l~~s~~~l~-------------~~  284 (948)
                              .-+||++++|.||||||||++-    ++.|       |++=...+-+ -+|+++.+.             -+
T Consensus       325 GlplP~~I~vHghwt~ngmKMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~Ll  404 (578)
T KOG0436|consen  325 GLPLPKMIFVHGHWTKNGMKMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLL  404 (578)
T ss_pred             CCCCccEEEEeeeeeecceecchhhccccCHHHHHHHhCccceeeEeeeccccCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence                    1257899999999999999863    2211       1100000000 123322110             01


Q ss_pred             HhhH---------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-------
Q psy6851         285 EKWT---------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-------  336 (948)
Q Consensus       285 ~r~~---------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-------  336 (948)
                      .|..                     .....+...+.++++.+.+.. |+|..+.|+.++++.++++|.++...       
T Consensus       405 nRc~gkkln~sn~e~~l~~~s~~v~ae~~~lv~~v~kl~ev~a~~~-d~f~~~~ale~V~si~n~~ntlvq~~aPWkl~~  483 (578)
T KOG0436|consen  405 NRCLGKKLNISNCESTLVVDSPTVAAEGEPLVDTVEKLPEVAATNY-DNFSLYSALEAVLSIGNAGNTLVQQRAPWKLFK  483 (578)
T ss_pred             HHHhhcccChhccccccccCCcchhhccchHHHHHHHhHHHHHhhc-ccccHHHHHHHHHHHHHhhhhhhhhcCCceecc
Confidence            1111                     112345566778888888888 89999999999999999999998642       


Q ss_pred             ---CCHHHHHHHHHHHHHHHhHccccc
Q psy6851         337 ---PNQLLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       337 ---~~~~lL~~i~~~V~~mL~VLGL~~  360 (948)
                         .+..-+..++..+...|.|+|+..
T Consensus       484 dsq~~~~~la~~~~~~le~lrv~~ill  510 (578)
T KOG0436|consen  484 DSQVSAEELAKVLHIILEVLRVIGILL  510 (578)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence               233445555666677788888853

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=98.38  E-value=9.3e-07  Score=109.17  Aligned_cols=112  Identities=18%  Similarity=0.144  Sum_probs=82.4

Q ss_pred             ccccccccccCCccc----------------cccccccEE-EcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTE----------------FKDKYGKVR-VHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHE----------------ne~h~G~l~-i~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |.+++|.|.+|.|--                +-..+|++. .+|+|||||+||+|++.++           |+ ++++|+
T Consensus       488 d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~i~p~~~i~~yg~D~lR~~l-~~~~~~  566 (800)
T PRK13208        488 DLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNVVTPEELLEKYGADAVRYWA-ASARLG  566 (800)
T ss_pred             eEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCCCCHHHHHHHcCccHHHHHH-hcCCCC
Confidence            567789999886632                114567776 5999999999999987764           45 488888


Q ss_pred             h-cCCChhhhHH----HHhhHH----------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q psy6851         273 N-LKFPATTVSS----FEKWTQ----------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC  325 (948)
Q Consensus       273 ~-l~~s~~~l~~----~~r~~~----------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL  325 (948)
                      + ++|+.+.+..    +.++..                      .+..+...+..+.+++.++| ++|+++.|+++|+++
T Consensus       567 ~d~~fs~~~~~~~~~~l~kl~N~~r~~~~~~~~~~~~~~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~A~~~i~~f  645 (800)
T PRK13208        567 SDTPFDEKQVKIGRRLLTKLWNASRFVLHFSADPEPDKAEVLEPLDRWILAKLAKVVEKATEAL-ENYDFAKALEEIESF  645 (800)
T ss_pred             CCceecHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHH
Confidence            8 8998876541    111111                      12234455677889999999 699999999999999


Q ss_pred             HHH--HHhhhc
Q psy6851         326 ISQ--VNIYLR  334 (948)
Q Consensus       326 Vra--iN~yLd  334 (948)
                      +..  +|.|++
T Consensus       646 ~~~~~~n~Yie  656 (800)
T PRK13208        646 FWHVFCDDYLE  656 (800)
T ss_pred             HHHHhhHHHHH
Confidence            975  899986

>PLN02843 isoleucyl-tRNA synthetase

Probab=98.29  E-value=1.9e-06  Score=108.52  Aligned_cols=115  Identities=13%  Similarity=0.048  Sum_probs=81.4

Q ss_pred             CccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHH-------------------
Q psy6851         220 RETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-------------------  263 (948)
Q Consensus       220 ~dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef-------------------  263 (948)
                      .|+|..|.|.+|.|+.+.                ..+|++.. +|+||||||||+|+..++                   
T Consensus       565 aDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNvI~p~~vi~~~~~~~~~~~yGaD~lR  644 (974)
T PLN02843        565 ADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNVVDPRLVIEGGKNQKQEPAYGADVLR  644 (974)
T ss_pred             ceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCcCCHHHHHhhccccccccccChHHHH
Confidence            378999999999887642                12355544 799999999999864432                   


Q ss_pred             HHHHHHHHhh-cCCChhhhH----HHHhhHH-------------------------HhHHHhHHHHHHHHHHHHHHhhcC
Q psy6851         264 FLNVKDHIRN-LKFPATTVS----SFEKWTQ-------------------------ADLELSTRFIQTKNNVHAALCDNM  313 (948)
Q Consensus       264 ~l~ls~hyR~-l~~s~~~l~----~~~r~~~-------------------------ad~eL~~~l~el~e~F~aAL~DDF  313 (948)
                      |.+++.+|++ ++|+.+.+.    .++++..                         .|.-+...+.++...+.++| ++|
T Consensus       645 ~~l~~~~~~~d~~~s~~~l~~~~~~~~kl~n~~rf~lgnl~~~~~~~~~~~~~~~~~D~wiLskL~~li~~v~~ay-e~y  723 (974)
T PLN02843        645 LWVASVDYTGDVLIGPQILKQMSDIYRKLRGTLRYLLGNLHDWKPDNAVPYEDLPSIDKYALFQLENVVNEIEESY-DNY  723 (974)
T ss_pred             HHHHhcccCCCceeCHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCccccCHHHHHHHHHHHHHHHHHHHHH-Hcc
Confidence            2226788888 888876543    1222111                         12223455677899999999 889


Q ss_pred             ChHHHHHHHHHH--HHHHHhhhcC
Q psy6851         314 DTRSALDSIRDC--ISQVNIYLRG  335 (948)
Q Consensus       314 NTP~ALaaLfeL--VraiN~yLd~  335 (948)
                      ++..|+..|+++  ...+|.|++.
T Consensus       724 ~f~~A~~~i~~f~~~dlsn~Yie~  747 (974)
T PLN02843        724 QFFKIFQILQRFTIVDLSNFYLDV  747 (974)
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHh
Confidence            999999999887  5689999874

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=98.20  E-value=2.3e-06  Score=107.11  Aligned_cols=114  Identities=11%  Similarity=0.111  Sum_probs=80.2

Q ss_pred             CccccccccccCCcccc----------------ccccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851         220 RETGICRQDELFPYTEF----------------KDKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHI  271 (948)
Q Consensus       220 ~dih~GG~DL~FPHHEn----------------e~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hy  271 (948)
                      .|++++|.|.++-|.-.                -..+|++.. +|+|||||+||+|...++           |+ ++..|
T Consensus       546 ~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaDalR~~l-l~~~~  624 (912)
T PRK05743        546 ADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNVIDPQDVIKKYGADILRLWV-ASTDY  624 (912)
T ss_pred             ceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCcCCHHHHHHhcChHHHHHHH-HhcCC
Confidence            37888999998744221                134688775 899999999999876543           44 45667


Q ss_pred             hh-cCCChhhhHH----HHhhHH--------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHH
Q psy6851         272 RN-LKFPATTVSS----FEKWTQ--------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALD  320 (948)
Q Consensus       272 R~-l~~s~~~l~~----~~r~~~--------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALa  320 (948)
                      .+ ++|+++.+..    ++++..                          .|..+...+.++...+.++| ++|+++.|+.
T Consensus       625 ~~D~~~s~~~l~~~~~~~~kl~N~~rf~~~nl~~~~~~~~~~~~~~l~~~D~~il~~l~~~~~~v~~~~-e~~~f~~a~~  703 (912)
T PRK05743        625 SGDVRISDEILKQVAEAYRRIRNTLRFLLGNLNDFDPAKDAVPYEELLELDRWALHRLAELQEEILEAY-ENYDFHKVYQ  703 (912)
T ss_pred             CCCeeecHHHHHHHHHHHHHHHHHHHHHHhCccCCCcccccCCchhCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            66 7888765431    222111                          12233455677889999999 8999999999


Q ss_pred             HHHHHH--HHHHhhhcC
Q psy6851         321 SIRDCI--SQVNIYLRG  335 (948)
Q Consensus       321 aLfeLV--raiN~yLd~  335 (948)
                      +|++++  ..+|.|++.
T Consensus       704 ~l~~f~~~~ls~~Yie~  720 (912)
T PRK05743        704 KLHNFCSVDLSAFYLDI  720 (912)
T ss_pred             HHHHHhhhhhceeehee
Confidence            999999  466888763

>TIGR00456 argS arginyl-tRNA synthetase

Probab=98.20  E-value=4.9e-05  Score=90.92  Aligned_cols=237  Identities=12%  Similarity=0.124  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHHHHhc--CCCCCCccc--cccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCc
Q psy6851         101 SEMFKMETDKYSQFDE--TVLPPTVLT--RVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE  176 (948)
Q Consensus       101 ~el~~~~~~~f~~dm~--nV~~P~~~p--RvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~  176 (948)
                      +.+.....+.|.+++.  ||.- +.+.  .-+-+-+.+- ..|+.|.++|++|+. |.+++++..|.+        . |.
T Consensus       231 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~E~e~~~~~~~~-~v~~~L~~~g~~~~~-Ga~~~~~~~~~d--------~-~~  298 (566)
T TIGR00456       231 KRLVEYSLEGIKETLARLNIHF-DSFVWEGESVKNGMVP-KVLEDLKEKGLVVED-GALWLDLTLFGD--------K-DK  298 (566)
T ss_pred             HHHHHHHHHHHHHHHHHcCCce-eeeeccccccccccHH-HHHHHHHHCCCEEEc-CCEEEEcccccC--------C-CC
Confidence            3344445556665555  7744 4333  3223334444 567899999999988 999999866542        0 12


Q ss_pred             cccccccccCCCCcCCCCCCCcccCCCCCCCC-CCcceeEeeccC-cccc---------ccccccCCccccccccccEEE
Q psy6851         177 AYGDTKTLQEGEVRGYPPWPARIEGLADETPN-RLKYHIFFYGTR-ETGI---------CRQDELFPYTEFKDKYGKVRV  245 (948)
Q Consensus       177 DFaLWK~ak~gEp~wespWg~~~~~m~~~~~G-RPGWHIEcLG~~-dih~---------GG~DL~FPHHEne~h~G~l~i  245 (948)
                      |..+-|.  +|.+-..+.   -+ +-+....- .+-+=|-+.|.. ..|.         -|..  -|  ..-.|.|+..|
T Consensus       299 ~~vl~ks--DGt~~Y~t~---Di-A~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG~~--~~--~~l~h~~~~~V  368 (566)
T TIGR00456       299 DRVLQKS--DGTYLYLTR---DI-AYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLGFY--KK--KELIHLNFGMV  368 (566)
T ss_pred             CeEEEEC--CCCceechh---hH-HHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcCCC--CC--CceEEEEEEEE
Confidence            4444332  232200000   00 00000000 123334445543 3332         1211  11  12345667778


Q ss_pred             cccchhhcchhHHHHHHHHHH---------------------------------HHHHHhh-cCCChhhhH---------
Q psy6851         246 HLSQKQQSLKLVVIMKEFFLN---------------------------------VKDHIRN-LKFPATTVS---------  282 (948)
Q Consensus       246 ~geKMSKSLGN~vti~ef~l~---------------------------------ls~hyR~-l~~s~~~l~---------  282 (948)
                      +|.|||||.||+|++.+++..                                 ++.--.+ .+|+.+.+.         
T Consensus       369 ~~~kmSkr~Gn~V~~~dll~~~~~ra~~~i~~~~~~~~~~~~~~vg~dAvRy~~L~~~~~~d~~Fd~d~~~~~~~n~~~y  448 (566)
T TIGR00456       369 PLGSMKTRRGNVISLDNLLDEASKRAGNVITIKNDLEEEDVADAVGIGAVRYFDLSQNRETHYVFDWDAMLSFEGNTAPY  448 (566)
T ss_pred             ECCCCCccCCceeeHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceeeHHhhcCCCCCceecHHHHhccCCCCchh
Confidence            889999999999987743211                                 2221111 445443210         


Q ss_pred             ---HH-------HhhH---------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-
Q psy6851         283 ---SF-------EKWT---------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-  336 (948)
Q Consensus       283 ---~~-------~r~~---------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-  336 (948)
                         .+       ++..               ..+..|...+..+.+.+..+| ++++.+.++..++++++.+|+|++.. 
T Consensus       449 iqYa~aR~~SIlrK~~~~~~~~~~~~~~~~~~~e~~Ll~~l~~~~~~v~~a~-~~~~p~~~~~~l~~La~~~N~yy~~~~  527 (566)
T TIGR00456       449 IQYAHARICSILRKADIDGEKLIADDFSLLEEKEKELLKLLLQFPDVLEEAA-EELEPHVLTNYLYELASLFSSFYKACP  527 (566)
T ss_pred             HHHHHHHHHHHHHhcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence               11       1111               112344556678889999999 89999999999999999999999653 


Q ss_pred             ----CCH-------HHHHHHHHHHHHHHhHccccc
Q psy6851         337 ----PNQ-------LLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       337 ----~~~-------~lL~~i~~~V~~mL~VLGL~~  360 (948)
                          .+.       .++..+...+..-|.+|||..
T Consensus       528 Vl~~~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~  562 (566)
T TIGR00456       528 VLDAENENLAAARLALLKATRQTLKNGLQLLGIEP  562 (566)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                111       234455566777789999854

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=98.19  E-value=3.1e-06  Score=104.71  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH----HHhhHH------------
Q psy6851         238 DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ------------  289 (948)
Q Consensus       238 ~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~------------  289 (948)
                      +|+|+|     |||||+||+++..++           |++..++|++ ++|+++.+..    +.|+..            
T Consensus       564 ~~~G~v-----KMSKS~GN~i~p~~~i~~ygaD~lRl~l~~~~~~~~d~~~s~~~l~~~~~~l~kl~~~~~~~~~~~~~~  638 (805)
T PRK00390        564 LTQGMV-----KMSKSKGNVVDPDDIIEKYGADTARLFEMFAGPPEKDLEWSDSGVEGAYRFLQRVWRLVVDAKGEAGAL  638 (805)
T ss_pred             eecCcE-----EeCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCccCCcccCHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            677888     999999999987764           3423468999 9999876652    233221            


Q ss_pred             ------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851         290 ------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL  333 (948)
Q Consensus       290 ------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL  333 (948)
                            .+..+...+.++...+.++| ++|++..|++.|++++..++++.
T Consensus       639 ~~~~~~~D~~il~~l~~~i~~v~~~~-e~~~f~~ai~~l~~f~n~lsk~~  687 (805)
T PRK00390        639 DVAALSEDKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYKAE  687 (805)
T ss_pred             CcccChhhHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHH
Confidence                  12234556778889999999 57999999999999999998876

>TIGR00422 valS valyl-tRNA synthetase

Probab=98.09  E-value=5.9e-06  Score=102.95  Aligned_cols=113  Identities=19%  Similarity=0.143  Sum_probs=80.0

Q ss_pred             ccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHHH----------HHHHHHH-h
Q psy6851         221 ETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEFF----------LNVKDHI-R  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef~----------l~ls~hy-R  272 (948)
                      |+|..|.|.+|.|....                .-+|+|.. +|+|||||+||+++..+++          .+++... .
T Consensus       480 d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~  559 (861)
T TIGR00422       480 DLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNVIDPLDVIEKYGADALRFTLASLVTPG  559 (861)
T ss_pred             ceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCCCCHHHHHHHhChHHHHHHHHhCCCCC
Confidence            68899999999998742                23577875 8999999999999876642          2233333 2


Q ss_pred             h-cCCChhhhHHH----HhhH------------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy6851         273 N-LKFPATTVSSF----EKWT------------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR  323 (948)
Q Consensus       273 ~-l~~s~~~l~~~----~r~~------------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLf  323 (948)
                      + ++|+.+.+...    .++.                        ..|.-+...+..+...+.++| +++++..|+.+|+
T Consensus       560 ~d~~f~~~~~~~~~~~~nkl~N~~rf~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~~~f~~A~~~l~  638 (861)
T TIGR00422       560 DDINFDWKRVESARNFLNKLWNASRFVLMNLSDDLELSGGEEKLSLADRWILSKLNRTIKEVRKAL-DKYRFAEAAKALY  638 (861)
T ss_pred             CCceecHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHH
Confidence            3 66776544311    1110                        112234455677889999999 8999999999999


Q ss_pred             HHH--HHHHhhhc
Q psy6851         324 DCI--SQVNIYLR  334 (948)
Q Consensus       324 eLV--raiN~yLd  334 (948)
                      +++  ..+|.|++
T Consensus       639 ~f~~~~~~n~Yie  651 (861)
T TIGR00422       639 EFIWNDFCDWYIE  651 (861)
T ss_pred             HHHHHHHHHHHHH
Confidence            997  78999986

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=98.06  E-value=7.5e-06  Score=102.22  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             ccccccccccCCccccc----------------cccccEE-EcccchhhcchhHHHHHHH-----------HHHHHH-HH
Q psy6851         221 ETGICRQDELFPYTEFK----------------DKYGKVR-VHLSQKQQSLKLVVIMKEF-----------FLNVKD-HI  271 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------~h~G~l~-i~geKMSKSLGN~vti~ef-----------~l~ls~-hy  271 (948)
                      |++..|.|.+|.|...-                .-+|+|. .+|+|||||+||+|...++           ++ ++. .+
T Consensus       475 d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNvIdP~dvi~~yGaDalR~~l-l~~~~~  553 (874)
T PRK05729        475 SVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDLIDKYGADALRFTL-AALASP  553 (874)
T ss_pred             ccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCCCCHHHHHHHhChHHHHHHH-HhCCCC
Confidence            68899999999987531                2257777 6999999999999977654           23 332 34


Q ss_pred             hh-cCCChhhhHHH----H------hhH-------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851         272 RN-LKFPATTVSSF----E------KWT-------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDS  321 (948)
Q Consensus       272 R~-l~~s~~~l~~~----~------r~~-------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa  321 (948)
                      .+ ++|+.+.+...    .      |+.                   ..+.-+...+..+...+.++| +++++..|+..
T Consensus       554 ~~Di~fs~~~l~~~~~~~nkl~N~~Rf~~~~~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~  632 (874)
T PRK05729        554 GRDIRFDEERVEGYRNFANKLWNASRFVLMNLEGADVGELPDPEELSLADRWILSRLNRTVAEVTEAL-DKYRFDEAARA  632 (874)
T ss_pred             CCCceeCHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH
Confidence            44 77877655311    1      110                   012223455677889999999 79999999999


Q ss_pred             HHHHH--HHHHhhhcC
Q psy6851         322 IRDCI--SQVNIYLRG  335 (948)
Q Consensus       322 LfeLV--raiN~yLd~  335 (948)
                      |++++  ..+|.|++.
T Consensus       633 l~~f~~~~~~~~Yle~  648 (874)
T PRK05729        633 LYEFIWNEFCDWYLEL  648 (874)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            99998  588888874

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=98.06  E-value=1.4e-05  Score=100.73  Aligned_cols=113  Identities=11%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             ccccccccccC-Cccccc---------------cccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELF-PYTEFK---------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~F-PHHEne---------------~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |+|..|.|.++ -.|...               .-+|++.. +|+|||||+||+|...++           |+ ++..|.
T Consensus       585 D~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNvIdP~~ii~~yGaD~lRl~l-ls~~~~  663 (961)
T PRK13804        585 DLYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNTVSPQDVIKQSGADILRLWV-ASVDYS  663 (961)
T ss_pred             eEEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCcCCHHHHHHhcCHHHHHHHH-HhCCCC
Confidence            67777888875 222211               22577775 999999999999866543           44 466777


Q ss_pred             h-cCCChhhhH----HHHhhHH--------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851         273 N-LKFPATTVS----SFEKWTQ--------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDS  321 (948)
Q Consensus       273 ~-l~~s~~~l~----~~~r~~~--------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa  321 (948)
                      + ++|+++.+.    .++++..                          .+.-+...+.++...+.++| ++|++..|+.+
T Consensus       664 ~D~~fs~~~l~~~~~~~~kL~N~~rf~l~nl~~~~~~~~~~~~~~~~~~D~wil~~l~~~~~~v~~~~-e~y~f~~a~~~  742 (961)
T PRK13804        664 DDQRIGKEILKQVSETYRKLRNTLRWLLGNLAHFDPGEDVVAYADLPELERYMLHRLNELDGLVREAY-DAYDFKRIYKA  742 (961)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHhccccCCcccccCChhhcCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            7 888876542    1122111                          12223445677889999999 89999999999


Q ss_pred             HHHHH-H-HHHhhhcC
Q psy6851         322 IRDCI-S-QVNIYLRG  335 (948)
Q Consensus       322 LfeLV-r-aiN~yLd~  335 (948)
                      |++++ . .+|.|++.
T Consensus       743 l~~f~~~~lsn~Yle~  758 (961)
T PRK13804        743 LVNFVNVDLSAFYFDI  758 (961)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            99999 3 47999874

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family

Probab=98.05  E-value=5.7e-06  Score=103.96  Aligned_cols=43  Identities=26%  Similarity=0.241  Sum_probs=39.5

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|++|.|++|+||.+.++++.|.++..             .+|+|||||+||+
T Consensus       573 P~D~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk~i~~~G~vl~~G~KMSKSlGNv  628 (938)
T TIGR00395       573 PLDWRISGKDLIPNHLTFYIFHHVAIFPEKFWPRGIVVNGYVMLEGKKMSKSKGNV  628 (938)
T ss_pred             CceEEEEeeccccchHHHHHHHHHHcCCccccCcEEEEeceEEeCCccccCcCCCC
Confidence            689999999999999999999999987632             7999999999999

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases

Probab=98.02  E-value=8.4e-06  Score=85.63  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCC
Q psy6851         101 SEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFD  163 (948)
Q Consensus       101 ~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~  163 (948)
                      .+++..+.+.|.++++  ||. ++.++|.|+|++.|+ ++|+.|+++|++|+.+|.|||++.+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~L~i~-~d~~~~es~~~~~~~-~~i~~L~~~g~~~~~~g~~~~~~~~~~  126 (212)
T cd00671          64 RKLVEESIKADLETYGRLDVR-FDVWFGESSYLGLMG-KVVELLEELGLLYEEDGALWLDLTEFG  126 (212)
T ss_pred             HHHHHHHHHHHHHHHHHhCCc-CceecchhhhhhHHH-HHHHHHHHCCCEEEeCCcEEEechhhC
Confidence            3334444445555554  998 799999999999999 799999999999999999999998874

Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.

>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC

Probab=97.99  E-value=2.1e-05  Score=71.38  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-HhhhcCCCCHHHHHHHHHHHHHHHhHccc
Q psy6851         299 IQTKNNVHAALCDNMDTRSALDSIRDCISQV-NIYLRGTPNQLLLRDIGAYVTKILTVFGC  358 (948)
Q Consensus       299 ~el~e~F~aAL~DDFNTP~ALaaLfeLVrai-N~yLd~~~~~~lL~~i~~~V~~mL~VLGL  358 (948)
                      ..+.++|.+||+||||||.||++||++++.+ |..-.. +.     ......+.+..+||+
T Consensus        27 ~~~~~~F~~AL~DDLNTp~Ala~L~~l~k~i~~~~~~~-~~-----~~~~~~~~~~~~~~~   81 (81)
T cd07955          27 EALVARLREALADDLDTPKALAALDAWAREALSRGGTD-PD-----APALVRTAVDALLGV   81 (81)
T ss_pred             HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhcCCCC-cc-----cHHHHHHHHHHHcCC
Confidence            3567899999999999999999999999988 764333 21     123346778888885

This domain is found in cysteinyl tRNA synthetases (CysRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. CysRS catalyzes the transfer of cysteine to the 3'-end of its tRNA. The family also includes a domain of MshC, the rate-determining enzyme in the mycothiol biosynthetic pathway, which is specific to actinomycetes. The anticodon-binding site of CysRS lies C-terminal to this model's footprint and is not shared by MshC.

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=97.97  E-value=1.7e-06  Score=93.00  Aligned_cols=43  Identities=14%  Similarity=-0.072  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851         631 WEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK  674 (948)
Q Consensus       631 ~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~  674 (948)
                      +++.|++||+.||+ .|+..++.|++++.+.+++++|+++|. |.
T Consensus        54 ~~~~i~~dL~wLGl-~~d~~~~qS~r~~~y~~~~~~Li~~G~aY~   97 (240)
T cd09287          54 AYDMIPEDLEWLGV-KWDEVVIASDRIELYYEYARKLIEMGGAYV   97 (240)
T ss_pred             HHHHHHHHHHHcCC-CCCCccchhccHHHHHHHHHHHHHcCCccc
Confidence            44558999999999 779999999999999999999999999 96

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=97.90  E-value=2.2e-05  Score=97.98  Aligned_cols=114  Identities=17%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             ccccccccccCCcccc----------------ccccccEEE-cccchhhcchhHHHHHHHH----------HHHHHHHhh
Q psy6851         221 ETGICRQDELFPYTEF----------------KDKYGKVRV-HLSQKQQSLKLVVIMKEFF----------LNVKDHIRN  273 (948)
Q Consensus       221 dih~GG~DL~FPHHEn----------------e~h~G~l~i-~geKMSKSLGN~vti~ef~----------l~ls~hyR~  273 (948)
                      |++++|.|.++-|.-.                -..+|+|.. +|+|||||+||+|+..+++          .+++..+.+
T Consensus       566 d~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~G~KMSKSkGNvI~p~d~i~~yGaDalR~~ll~~~~~~  645 (861)
T TIGR00392       566 DFILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEKGRKMSKSLGNVVDPLKVINKYGADILRLYVASSDPWE  645 (861)
T ss_pred             eEEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCCCCCcCCCCCCCCCHHHHHHHcCHHHHHHHHHhCCCCC
Confidence            6788888887633221                023678774 8999999999999877642          113334444


Q ss_pred             -cCCChhhhHHH------------HhhH---------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHH
Q psy6851         274 -LKFPATTVSSF------------EKWT---------------------QADLELSTRFIQTKNNVHAALCDNMDTRSAL  319 (948)
Q Consensus       274 -l~~s~~~l~~~------------~r~~---------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~AL  319 (948)
                       ++|+.+.+...            +...                     ..+..+...+..+...+.++| ++|++..|+
T Consensus       646 D~~fs~~~l~~~~~~~~n~l~N~~~~~~~~~~l~~~~~~~~~~~~~~l~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~  724 (861)
T TIGR00392       646 DLRFSDEILKQVVEKYRKIRWNTYRFLLTYANLDKFDPLFNSVAVEKFPEEDRWILSRLNSLVEEVNEAL-EKYNFHKVL  724 (861)
T ss_pred             CceECHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HhccHHHHH
Confidence             67776654311            1110                     012223445667888999999 689999999


Q ss_pred             HHHHHHHHH--HHhhhcC
Q psy6851         320 DSIRDCISQ--VNIYLRG  335 (948)
Q Consensus       320 aaLfeLVra--iN~yLd~  335 (948)
                      ..|++++..  +|.|++.
T Consensus       725 ~~l~~f~~~~l~n~Yi~~  742 (861)
T TIGR00392       725 RALQDFIVEELSNWYIRI  742 (861)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999986  8999863

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=97.88  E-value=9.8e-06  Score=92.80  Aligned_cols=71  Identities=14%  Similarity=0.238  Sum_probs=53.9

Q ss_pred             HHHHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851          88 AQEAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVN  160 (948)
Q Consensus        88 ~~~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~  160 (948)
                      .-+.+|.+.|+++.+++.++.+.|.++++  ||. .+.+.|-|  +|..-.- ++.++|.++|+.|..+-..+|++.
T Consensus        51 ~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~-~D~F~rTt~~~h~~~v~-~i~~~L~~~G~I~~~~~~~~Yc~~  125 (391)
T PF09334_consen   51 KIETAAEKQGIDPEEFCDKYSAKFKELLEALNIS-YDRFIRTTDDRHKEFVQ-EIFKRLYDNGYIYKREYEGWYCPS  125 (391)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT----SEEEETTSHHHHHHHH-HHHHHHHHTTSEEEEEEEEEEETT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-CcceeCCCCHHHHHHHH-HHHHHHHhcCceeecccceeEecC
Confidence            34556677899999999999999998877  774 46777755  6766666 799999999999998777888764

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=97.79  E-value=4.4e-05  Score=95.15  Aligned_cols=83  Identities=12%  Similarity=0.134  Sum_probs=58.5

Q ss_pred             chhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH----HHhhHH----------------------H
Q psy6851         249 QKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ----------------------A  290 (948)
Q Consensus       249 KMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~----------------------a  290 (948)
                      |||||+||+|++.++           |++..++|++ ++|+++.+..    +.|+..                      .
T Consensus       604 KMSKS~GN~v~p~~ii~~ygaDalRl~~l~~~~~~~d~~~~~~~l~~~~~~l~kl~~~~~~~~~~~~~~~~~~~~~l~~~  683 (842)
T TIGR00396       604 KMSKSKGNGIDPQEIVKKHGADALRLYIMFMGPIAASLEWNDSGLEGARRFLDRVWNLFYNILGELDGKTYLTPTILEEA  683 (842)
T ss_pred             hhhhcCCCcCCHHHHHHHcCchHHHHHHHhcCCcCCCCccCHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccCCHH
Confidence            999999999988764           3423568998 9999887642    222221                      1


Q ss_pred             hHHHhHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHhh
Q psy6851         291 DLELSTRFIQTKNNVHAALCDNMD-TRSALDSIRDCISQVNIY  332 (948)
Q Consensus       291 d~eL~~~l~el~e~F~aAL~DDFN-TP~ALaaLfeLVraiN~y  332 (948)
                      +..+...+..+...+.++|+ ++. +..|+++|++|++....+
T Consensus       684 d~~il~~l~~~i~~v~~~~e-~y~~fn~ai~~l~~f~n~L~~~  725 (842)
T TIGR00396       684 QKELRRDVHKFLKKVTEDLE-KLESFNTAISAMMILLNALYKA  725 (842)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhh
Confidence            22234456678899999995 555 777999999999876664

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=97.74  E-value=6.9e-05  Score=95.40  Aligned_cols=95  Identities=15%  Similarity=0.139  Sum_probs=64.8

Q ss_pred             cccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHHH----Hhh------H--------
Q psy6851         240 YGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSSF----EKW------T--------  288 (948)
Q Consensus       240 ~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~~----~r~------~--------  288 (948)
                      +|+|.. +|+|||||+||+|...++           |++....+.+ ++|+.+.+...    .++      .        
T Consensus       528 hG~v~d~~G~KMSKSkGNvIdP~dvIe~yGaDalR~~L~~~~~~g~D~~fs~~~l~~~~~f~nkl~N~~R~~~~~~~~~~  607 (1052)
T PRK14900        528 HPMVRDEKGQKMSKTKGNVIDPLVITEQYGADALRFTLAALTAQGRDIKLAKERIEGYRAFANKLWNASRFALMNLSGYQ  607 (1052)
T ss_pred             cccEECCCCCCccCCCCCCCCHHHHHHHhCcHHHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence            578876 899999999999876553           3321222333 67776544321    110      0        


Q ss_pred             ------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH--HHHHhhhcC
Q psy6851         289 ------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG  335 (948)
Q Consensus       289 ------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV--raiN~yLd~  335 (948)
                                  ..|..+...+..+...+..+| +++++..|+..|++++  ..+|.||+.
T Consensus       608 ~~~~~~~~~~~~~~D~wils~l~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~n~Yie~  667 (1052)
T PRK14900        608 ERGEDPARLARTPADRWILARLQRAVNETVEAL-EAFRFNDAANAVYAFVWHELCDWYIEL  667 (1052)
T ss_pred             cccccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhhHHHHHh
Confidence                        112223445667889999999 8999999999999998  588999974

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=97.74  E-value=6.4e-05  Score=95.06  Aligned_cols=96  Identities=25%  Similarity=0.238  Sum_probs=65.6

Q ss_pred             cccccEEE-cccchhhcchhHHHHHHHH----------HHHHHHH-hh-cCCChhh-hHH----HHhhH-----------
Q psy6851         238 DKYGKVRV-HLSQKQQSLKLVVIMKEFF----------LNVKDHI-RN-LKFPATT-VSS----FEKWT-----------  288 (948)
Q Consensus       238 ~h~G~l~i-~geKMSKSLGN~vti~ef~----------l~ls~hy-R~-l~~s~~~-l~~----~~r~~-----------  288 (948)
                      ..+|+|.. +|+|||||+||+|...+++          .+++..+ ++ ++|+.+. +..    +.++.           
T Consensus       580 ~~hG~Vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~lls~~~~~~D~~fs~~~~~~~~~~~l~kl~N~~~f~~~y~~  659 (975)
T PRK06039        580 LVHGHVLDEDGQKMSKSLGNYVDPFEVFDKYGADALRWYLLSSSAPWEDLRFSEDGVREVVRKFLLTLWNVYSFFVLYAN  659 (975)
T ss_pred             EEeeeEECCCCCCcCCCCCCcCCHHHHHHHhChHHHHHHHHhCCCCCCCceechhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34677764 8999999999999876642          2244444 33 7788766 321    11110           


Q ss_pred             -----------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHH-Hhhhc
Q psy6851         289 -----------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQV-NIYLR  334 (948)
Q Consensus       289 -----------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVrai-N~yLd  334 (948)
                                       ..+.-+...+..+...+.++| +++++..|+..|++++... |-|+.
T Consensus       660 ~~~~~~~~~~~~~~~~~~~D~wils~l~~li~~v~~a~-e~y~~~~A~~~l~~f~~~lsn~Yi~  722 (975)
T PRK06039        660 LDGFDYPPAEDEVDSLNELDRWILSRLNSLVKEVTEAL-DNYDITKAARAIRDFVDDLSNWYIR  722 (975)
T ss_pred             hccCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHH
Confidence                             012223445677889999999 7899999999999999765 77875

>PLN02959 aminoacyl-tRNA ligase

Probab=97.74  E-value=5.2e-05  Score=96.71  Aligned_cols=107  Identities=15%  Similarity=0.092  Sum_probs=71.7

Q ss_pred             CccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851         220 RETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI  271 (948)
Q Consensus       220 ~dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy  271 (948)
                      .|+..+|.|++|.|..+.                 ..+|+|.++|+|||||+||+|+..++           ++...+.+
T Consensus       672 ~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNvI~p~diI~kyGADalRl~la~~~~~  751 (1084)
T PLN02959        672 FDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNFLTLRQAIEEFSADATRFALADAGDG  751 (1084)
T ss_pred             CeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCcCCHHHHHHHhCchHHHHHHhhcCCc
Confidence            377889999999996531                 34689999999999999999987654           33222234


Q ss_pred             hh-cCCChhhhHH-HHhhH-----------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHH-HHH
Q psy6851         272 RN-LKFPATTVSS-FEKWT-----------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDC  325 (948)
Q Consensus       272 R~-l~~s~~~l~~-~~r~~-----------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaL-feL  325 (948)
                      .+ .+|+.+..+. ..++.                       ..|.-+...+..+...+.++| +++++..|+... ++|
T Consensus       752 ~~D~nF~~k~~n~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~D~wils~l~~~i~~v~~a~-e~y~f~~A~~~~~Yel  830 (1084)
T PLN02959        752 VDDANFVFETANAAILRLTKEIAWMEEVLAAESSLRTGPPSTYADRVFENEINIAIAETEKNY-EAMMFREALKSGFYDL  830 (1084)
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcccCCcccCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHH
Confidence            44 7777754321 11111                       012223455677888999999 789999999984 334


Q ss_pred             HH
Q psy6851         326 IS  327 (948)
Q Consensus       326 Vr  327 (948)
                      ..
T Consensus       831 ~~  832 (1084)
T PLN02959        831 QA  832 (1084)
T ss_pred             HH
Confidence            43

>PLN02943 aminoacyl-tRNA ligase

Probab=97.73  E-value=4.6e-05  Score=96.11  Aligned_cols=94  Identities=14%  Similarity=0.142  Sum_probs=67.8

Q ss_pred             ccEE-EcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChhhhHH----HHhhHH---------------
Q psy6851         241 GKVR-VHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ---------------  289 (948)
Q Consensus       241 G~l~-i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~---------------  289 (948)
                      |++. .+|+|||||+||+|...++          |.+++.+|++ ++|+++.+..    +.++..               
T Consensus       574 g~v~~~~G~KMSKS~GN~i~p~~~i~~ygaDalR~~l~~~~~~~d~~fs~~~l~~~~~~~~kl~N~~rf~~~~l~~~~~~  653 (958)
T PLN02943        574 GLIRDSQGRKMSKTLGNVIDPLDTIKEFGTDALRFTLALGTAGQDLNLSTERLTSNKAFTNKLWNAGKFVLQNLPSQSDT  653 (958)
T ss_pred             ccEECCCCCcccCcCCCCCCHHHHHHhcCChHHHHHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            4444 5889999999999987764          2336678877 9999876531    112111               


Q ss_pred             ----------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH--HHHHhhhcC
Q psy6851         290 ----------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI--SQVNIYLRG  335 (948)
Q Consensus       290 ----------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV--raiN~yLd~  335 (948)
                                            .|.-+...+..+...+.++| +++++..|+..|++++  ..+|.|++.
T Consensus       654 ~~~~~~~~~~~~~~~~~~~l~~~D~wilskl~~~i~~v~~~~-e~y~f~~A~~~i~~f~~~~~~d~YiE~  722 (958)
T PLN02943        654 SAWEHILACKFDKEESLLSLPLPECWVVSKLHELIDSVTTSY-DKYFFGDVGREIYDFFWSDFADWYIEA  722 (958)
T ss_pred             ccccccccccCCccccccccCHHHHHHHHHHHHHHHHHHHHH-HhcChhHHHHHHHHHHHHHHHHHHHHh
Confidence                                  01112345667888999999 8899999999999995  889999974

>PRK12451 arginyl-tRNA synthetase; Reviewed

Probab=97.62  E-value=0.0012  Score=79.10  Aligned_cols=230  Identities=12%  Similarity=0.113  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCccc
Q psy6851         101 SEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAY  178 (948)
Q Consensus       101 ~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~DF  178 (948)
                      +.+.....+.|.+.+.  ||.= +.+--=+-|-+.+= +.|++|.++|++|+++|.++++++.|.+           .|+
T Consensus       230 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~es~~~~~~~-~v~~~L~~~g~~~e~dGa~~~~~~~~g~-----------~~~  296 (562)
T PRK12451        230 NWFRHESLKEFSRIYELLGVEF-TNFQGEAFYNDLME-DFIGILEEHDLLEESEGALVVNLEEEGM-----------PPC  296 (562)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCc-eeecchHhhhhhHH-HHHHHHHHCCCEEecCCeEEEEecccCC-----------Cce
Confidence            3334444556665555  8854 34444455555554 6889999999999999999998755421           123


Q ss_pred             cccccccCCCCcCCC------CCCCcccCCCCCCCCC--CcceeEeeccC-cccc---------ccccccCCccccc--c
Q psy6851         179 GDTKTLQEGEVRGYP------PWPARIEGLADETPNR--LKYHIFFYGTR-ETGI---------CRQDELFPYTEFK--D  238 (948)
Q Consensus       179 aLWK~ak~gEp~wes------pWg~~~~~m~~~~~GR--PGWHIEcLG~~-dih~---------GG~DL~FPHHEne--~  238 (948)
                      .+-|.  +|.+-..+      -|-          ..|  +-+=|-+.|.. ..|.         -|.+   + -++-  .
T Consensus       297 vl~ks--DGt~~Y~t~DiA~~~~k----------~~~~~~d~~IyV~g~dq~~h~~~l~~~~~~lg~~---~-~~~l~h~  360 (562)
T PRK12451        297 LIRKS--DGATIYATRDLTAALYR----------QNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYT---W-VDGMEHV  360 (562)
T ss_pred             EEEeC--CCccccchhHHHHHHHH----------hhccCCCEEEEEeCCcHHHHHHHHHHHHHHcCCC---c-ccCeEEE
Confidence            33222  22110000      000          011  23345455553 3332         1211   0 1122  3


Q ss_pred             ccccEEEcccchhhcchhHHHHHHHHHHHHH-----------------------------------HHhh-cCCChhh-h
Q psy6851         239 KYGKVRVHLSQKQQSLKLVVIMKEFFLNVKD-----------------------------------HIRN-LKFPATT-V  281 (948)
Q Consensus       239 h~G~l~i~geKMSKSLGN~vti~ef~l~ls~-----------------------------------hyR~-l~~s~~~-l  281 (948)
                      .+|+|...|.|||+=.||++++.|++-....                                   ...+ +.|..+. +
T Consensus       361 ~~g~V~~~g~kmStR~G~~v~l~dLldea~~~a~~~~~~~~~~l~~~~~~a~~vg~~Airy~~l~~~~~~~~~Fd~d~~l  440 (562)
T PRK12451        361 PFGLILKDGKKMSTRKGRVVLLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENML  440 (562)
T ss_pred             eeeeEecCCCCCcCCCCCeeEHHHHHHHHHHHHHHHHHhhccccccHHHHHHHhccceeeeHHhhcCCCCCceECHHHHh
Confidence            3678888999999999999999987642111                                   0001 3343332 1


Q ss_pred             H-----------HHHhhH-------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q psy6851         282 S-----------SFEKWT-------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI  331 (948)
Q Consensus       282 ~-----------~~~r~~-------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~  331 (948)
                      +           +..|..                   ..+..+...+..+.+.+..+| ++++.+.++..|+++++..|+
T Consensus       441 ~~~g~t~pYiQYa~AR~~SIlrka~~~~~~~~~~l~~~~E~~Ll~~L~~~~~~v~~a~-e~~ep~~~~~yl~~LA~~fN~  519 (562)
T PRK12451        441 KFEGETGPYVQYTHARACSILRKESVEFETCTFALKDDYSWSVVKLLNKFPQVIEAAF-NKNEPSVISKYVLDVAQSFNK  519 (562)
T ss_pred             CcCCCccHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence            0           111111                   122345556777889999999 899999999999999999999


Q ss_pred             hhcCCC---C-------HHHHHHHHHHHHHHHhHccccc
Q psy6851         332 YLRGTP---N-------QLLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       332 yLd~~~---~-------~~lL~~i~~~V~~mL~VLGL~~  360 (948)
                      |++...   .       ..++..+...+..-|.+|||..
T Consensus       520 fy~~~~Vl~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~  558 (562)
T PRK12451        520 YYGNVRILEESAEKDSRLALVYAVTVVLKEGLRLLGVEA  558 (562)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            987521   1       1234455566777788999854

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed

Probab=97.54  E-value=0.00012  Score=91.98  Aligned_cols=43  Identities=23%  Similarity=0.230  Sum_probs=39.3

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|++|.|+++.|+-.-+.++.++++..             .+|+|||||+||+
T Consensus       530 P~D~~~~GkDii~~Hl~~~~~~~~a~~~~~~~Pk~v~~hG~vl~~G~KMSKS~GNv  585 (897)
T PRK12300        530 PVDWRHSGKDLIPNHLTFFIFNHVAIFPEEKWPRGIVVNGFVLLEGKKMSKSKGNV  585 (897)
T ss_pred             CceEEEeeeccCccHHHHHHHHHHHhcCCCccCcEEEEcceEEECCccccCcCCCC
Confidence            689999999999999999999999987642             6899999999999

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00025  Score=87.52  Aligned_cols=115  Identities=14%  Similarity=0.054  Sum_probs=73.7

Q ss_pred             ccccccccccCCccccc----------------------cccccEEE-cccchhhcchhHHHHHHH-----------HHH
Q psy6851         221 ETGICRQDELFPYTEFK----------------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLN  266 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------------~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~  266 (948)
                      |+-+||.||+=-|--+.                      ...|||.. +|+|||||.||+|+..+.           |.+
T Consensus       528 D~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~v~p~~~i~~yGADt~Rl~~m  607 (814)
T COG0495         528 DLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNVVDPEEAVEKYGADTVRLYIM  607 (814)
T ss_pred             heeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCCCCHHHHHHHhCchHHHHHHH
Confidence            56689999975553321                      34689999 799999999999987764           333


Q ss_pred             HHHHHhh-cCCChhhhHHH----HhhHHHh----------------HHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q psy6851         267 VKDHIRN-LKFPATTVSSF----EKWTQAD----------------LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC  325 (948)
Q Consensus       267 ls~hyR~-l~~s~~~l~~~----~r~~~ad----------------~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL  325 (948)
                      ..+-.-+ ++|++..+.+.    +|+...-                ..+.-.+..+...+.+.+...+-.-.|++.+++|
T Consensus       608 ~~ap~~~d~~W~e~gv~g~~rfL~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~v~~~~e~~~~~nt~i~~~m~l  687 (814)
T COG0495         608 FAAPPEQDLEWSESGVEGARRFLQRVWNLVKEHLEKLVEELTKEQGKEDRWLLHRTIKKVTEDFEARQTFNTAIAALMEL  687 (814)
T ss_pred             hhCChhhCCCCChhhhHHHHHHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333 88888776632    2222210                1111223344555555554436667899999999


Q ss_pred             HHHHHhhhcC
Q psy6851         326 ISQVNIYLRG  335 (948)
Q Consensus       326 VraiN~yLd~  335 (948)
                      ++....|...
T Consensus       688 ~N~l~~~~~~  697 (814)
T COG0495         688 LNALRKYLRR  697 (814)
T ss_pred             HHHHHHHHhc
Confidence            9999988764

>PLN02882 aminoacyl-tRNA ligase

Probab=97.47  E-value=0.00038  Score=89.44  Aligned_cols=96  Identities=20%  Similarity=0.203  Sum_probs=65.9

Q ss_pred             cccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHh--h-cCCChhhhHH-----HHhhHH--------
Q psy6851         238 DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIR--N-LKFPATTVSS-----FEKWTQ--------  289 (948)
Q Consensus       238 ~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR--~-l~~s~~~l~~-----~~r~~~--------  289 (948)
                      ..+|++.. +|+|||||+||++...++           |+ +++.+.  . +.|+.+.+..     +.++..        
T Consensus       602 ivhG~vlde~G~KMSKSlGNvIdP~evi~~YGADaLR~~L-l~s~~~~~~d~~fs~~~v~~~~~~~l~kl~Na~rfl~~~  680 (1159)
T PLN02882        602 ICNGLVLAEDGKKMSKSLKNYPDPNEVIDKYGADALRLYL-INSPVVRAEPLRFKEEGVFGVVKDVFLPWYNAYRFLVQN  680 (1159)
T ss_pred             EEccEEECCCCCCcccCCCCCCCHHHHHHHhCcHHHHHHH-HhCCcccCcCcccCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45788887 799999999998864432           34 455542  3 5676554321     111110        


Q ss_pred             --------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-HHHhhhcC
Q psy6851         290 --------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS-QVNIYLRG  335 (948)
Q Consensus       290 --------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr-aiN~yLd~  335 (948)
                                                .|.-+...+..+...+.++| +++++..|+..|++++. .+|.|++.
T Consensus       681 ~~~~~~~~~~~~~p~~~~~~~~~~~~~D~wIls~l~~li~~v~~~m-e~y~f~~A~~~I~~Fv~~lsN~YIe~  752 (1159)
T PLN02882        681 AKRLEVEGGAPFVPLDLAKLQNSANVLDRWINSATQSLVKFVREEM-GAYRLYTVVPYLVKFIDNLTNIYVRF  752 (1159)
T ss_pred             hhhhhhccccCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHhHHHHHh
Confidence                                      12223445677889999999 88999999999999997 58999974

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=97.46  E-value=8e-05  Score=88.15  Aligned_cols=83  Identities=20%  Similarity=0.245  Sum_probs=52.7

Q ss_pred             CCcCCCCCCCcccCCCCCCCCCCcceeEeeccC-ccccccccc-------cC----CccccccccccEEE--cccchhhc
Q psy6851         188 EVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ETGICRQDE-------LF----PYTEFKDKYGKVRV--HLSQKQQS  253 (948)
Q Consensus       188 Ep~wespWg~~~~~m~~~~~GRPGWHIEcLG~~-dih~GG~DL-------~F----PHHEne~h~G~l~i--~geKMSKS  253 (948)
                      ...|..-|+.+|.        --|=..|-+|.. .+.+||-|.       +|    |.+   ..++++++  +|+|||||
T Consensus       210 KL~WkvdW~~RW~--------~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~l~~~~P~~---~~ye~v~L~~~g~KMSKS  278 (515)
T TIGR00467       210 KLPWRVDWPARWK--------IEKVTFEPAGKDHAAAGGSYDTGVNIAKEIFQYSPPVT---VQYEWISLKGKGGKMSSS  278 (515)
T ss_pred             ccCCCCCcHhhHh--------hhCcccccCCCCccCccCCchhHHHHHHHHhCCCCCcC---cEEEEEEEcCCCccccCC
Confidence            4578888887662        222233446654 333444454       34    322   23455555  46799999


Q ss_pred             chhHHHHHHH----------HHHHHHHHhh-cCCChhhh
Q psy6851         254 LKLVVIMKEF----------FLNVKDHIRN-LKFPATTV  281 (948)
Q Consensus       254 LGN~vti~ef----------~l~ls~hyR~-l~~s~~~l  281 (948)
                      +||+++++++          |+.++.+|++ ++|+.+.+
T Consensus       279 ~Gn~itl~dll~~~~pdalR~~~l~~~~~~~ldFd~~~l  317 (515)
T TIGR00467       279 KGDVISVKDVLEVYTPEITRFLFARTKPEFHISFDLDVI  317 (515)
T ss_pred             CCCCccHHHHHHHcCHHHHHHHHhccCCCCCCcCCHHHH
Confidence            9999999875          3447889988 88987654

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional

Probab=97.17  E-value=0.00096  Score=84.85  Aligned_cols=40  Identities=15%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHHHhhhc
Q psy6851         294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDC--ISQVNIYLR  334 (948)
Q Consensus       294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL--VraiN~yLd  334 (948)
                      +...+..+...+.++| ++|++..|+.+|+++  ...+|.|++
T Consensus       714 Ils~L~~~i~~v~~~~-e~y~f~~A~~~i~~F~~~~~~n~Yie  755 (995)
T PTZ00419        714 ILHRLNVAIKEVTEGF-KEYDFSEATQATYNFWLYELCDVYLE  755 (995)
T ss_pred             HHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhhHHHHHH
Confidence            3445667889999999 789999999999996  467888886

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.00048  Score=82.24  Aligned_cols=60  Identities=15%  Similarity=-0.027  Sum_probs=54.3

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      +|+++|-+.|.++.+.|||.- |.+.|+|+  |..-+-++.++|.++|+ |...-..+|+++.+
T Consensus        71 el~d~~~~~~~~~~~~l~Isf-D~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~Yc~~~e  133 (558)
T COG0143          71 ELVDKNHEEFKELFKALNISF-DNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGLYCVSCE  133 (558)
T ss_pred             HHHHHHHHHHHHHHHHhCCcc-cccccCCCHHHHHHHHHHHHHHHHCCCEeccceeeeEccccc
Confidence            467789999999999999987 99999985  88889999999999999 99988899999886

>PLN02843 isoleucyl-tRNA synthetase

Probab=96.98  E-value=0.0013  Score=83.58  Aligned_cols=45  Identities=18%  Similarity=0.181  Sum_probs=40.7

Q ss_pred             CCCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         831 GPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       831 g~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      .-+.|+|..|.|++|.|+...+..+.++.+..             .+|+||||||||+
T Consensus       562 ~~PaDl~~eG~Di~rgWf~s~l~~~~~~~g~~Pfk~v~~HG~vld~~G~KMSKSlGNv  619 (974)
T PLN02843        562 SYPADLYLEGSDQHRGWFQSSLLTSVATKGKAPYKSVLTHGFVLDEKGFKMSKSLGNV  619 (974)
T ss_pred             CCCceeeeeeccccchHHHHHHHHHHHhcCCCccceEEEeccEECCCCCCcCCCCCCc
Confidence            35789999999999999999999999988763             3799999999999

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=96.95  E-value=0.0019  Score=83.41  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=33.9

Q ss_pred             HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH-HHHhhhc
Q psy6851         294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCIS-QVNIYLR  334 (948)
Q Consensus       294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr-aiN~yLd  334 (948)
                      +...+..+.+.+.++| +++++..|+.+|++++. .+|-|+.
T Consensus       816 ILs~l~~li~~v~~~m-e~Y~f~~A~~~i~~Fi~~lsnwYIe  856 (1205)
T PTZ00427        816 IFSSVQSLTKSVHTEM-KAYKLYNVLPKLLQFIENLTNWYIR  856 (1205)
T ss_pred             HHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHhccHHHH
Confidence            3456678899999999 89999999999999997 5577776

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.0024  Score=79.87  Aligned_cols=39  Identities=21%  Similarity=0.367  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH-HHH-Hhhhc
Q psy6851         295 STRFIQTKNNVHAALCDNMDTRSALDSIRDCI-SQV-NIYLR  334 (948)
Q Consensus       295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV-rai-N~yLd  334 (948)
                      ...+..+...+.+|| +++++.+++..|.+++ ... |=|++
T Consensus       689 l~rl~~l~~~v~eay-e~y~f~~v~~~l~~F~~~dLS~~Yld  729 (933)
T COG0060         689 LSRLNSLVKEVREAY-ENYDFHKVVRALMNFVSEDLSNWYLD  729 (933)
T ss_pred             HHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhhhHHHHH
Confidence            456778899999999 8999999999999999 333 44553

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6

Probab=96.82  E-value=0.00077  Score=77.50  Aligned_cols=59  Identities=15%  Similarity=0.046  Sum_probs=51.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++..|.+.|.+.+++|||.. |.+.|+|  +|...+.++.++|.++|+ |+.+...+|+++.+
T Consensus        66 ~~~~~~~~~~~~~~~~~I~~-D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~Yc~~~e  127 (391)
T PF09334_consen   66 FCDKYSAKFKELLEALNISY-DRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGWYCPSCE  127 (391)
T ss_dssp             HHHHHHHHHHHHHHHTT----SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHcCCCC-cceeCCCCHHHHHHHHHHHHHHHhcCceeecccceeEecCcC
Confidence            56789999999999999986 8999988  588889999999999999 99988999999885

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....

>PLN02563 aminoacyl-tRNA ligase

Probab=96.65  E-value=0.0038  Score=79.18  Aligned_cols=37  Identities=5%  Similarity=0.070  Sum_probs=31.1

Q ss_pred             HhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q psy6851         294 LSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNI  331 (948)
Q Consensus       294 L~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~  331 (948)
                      +...+..+...+.++| +++++..|+++|++++...+.
T Consensus       806 ll~kl~~~ikkVte~~-e~y~FntAi~~lmef~n~l~~  842 (963)
T PLN02563        806 QLRLLHKCIAKVTEEI-ESTRFNTAISAMMEFTNAAYK  842 (963)
T ss_pred             HHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhC
Confidence            3445667888999999 799999999999999988764

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.0077  Score=74.93  Aligned_cols=115  Identities=20%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             cCccccccccccCCc----------cccccccccEEE-------cccchhhcchhHHHHHH-----------HHHH-HHH
Q psy6851         219 TRETGICRQDELFPY----------TEFKDKYGKVRV-------HLSQKQQSLKLVVIMKE-----------FFLN-VKD  269 (948)
Q Consensus       219 ~~dih~GG~DL~FPH----------HEne~h~G~l~i-------~geKMSKSLGN~vti~e-----------f~l~-ls~  269 (948)
                      +++.-..|.|-+|=-          +.++.-+..|.|       +|+|||||+||+|-.-+           |++. +.+
T Consensus       478 Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~  557 (877)
T COG0525         478 PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNVIDPLDVIDKYGADALRFTLASLAS  557 (877)
T ss_pred             CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCcCCHHHHHHHhChHHHHHHHHhccC
Confidence            345566778888753          333333444554       46999999999974332           2221 222


Q ss_pred             HHhhcCCChhhhHHHHhhH----------------------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851         270 HIRNLKFPATTVSSFEKWT----------------------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDS  321 (948)
Q Consensus       270 hyR~l~~s~~~l~~~~r~~----------------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa  321 (948)
                      +=|.++|+.+.+.+..++.                            ..+.=+...+.++...+.++| |++++..|..+
T Consensus       558 ~G~Di~~~~~~~~~~rnF~nKlWNa~Rfv~~~~~~~~~~~~~~~~~~~~drWIls~l~~~v~~v~~~l-d~y~f~~a~~~  636 (877)
T COG0525         558 PGRDINFDEKRVEGYRNFLNKLWNATRFVLMNLDDLGPDDLDLLALSLADRWILSRLNETVKEVTEAL-DNYRFDEAARA  636 (877)
T ss_pred             CCcccCcCHHHHHHHHHHHHHHHhHHHHHHhcccccCcccccccccchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHH
Confidence            2233566655443221111                            112223456778889999999 78999999999


Q ss_pred             HHHHHH--HHHhhhc
Q psy6851         322 IRDCIS--QVNIYLR  334 (948)
Q Consensus       322 LfeLVr--aiN~yLd  334 (948)
                      |.+++=  .++-||+
T Consensus       637 ly~F~W~~fcD~YlE  651 (877)
T COG0525         637 LYEFIWNDFCDWYLE  651 (877)
T ss_pred             HHHHhHHHHHHHHHH
Confidence            999884  4556765

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=96.58  E-value=0.0016  Score=77.30  Aligned_cols=27  Identities=11%  Similarity=0.065  Sum_probs=24.0

Q ss_pred             cccccEEEc-ccchhhcchhHHHHHHHH
Q psy6851         238 DKYGKVRVH-LSQKQQSLKLVVIMKEFF  264 (948)
Q Consensus       238 ~h~G~l~i~-geKMSKSLGN~vti~ef~  264 (948)
                      +++|++.+. |+|||||+||++++.+++
T Consensus       268 ~~y~~v~~~~G~KMSKSkGN~i~~~d~l  295 (510)
T PRK00750        268 FVYELFLDKKGEKISKSKGNVITIEDWL  295 (510)
T ss_pred             eeeeeEEeCCCCcccccCCCccCHHHHH
Confidence            678999998 999999999999998854

>PRK00390 leuS leucyl-tRNA synthetase; Validated

Probab=96.51  E-value=0.002  Score=80.40  Aligned_cols=59  Identities=14%  Similarity=-0.055  Sum_probs=49.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCC----eeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPT----VLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~----~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++.+|.+.|.++|++||+.. |    +.|---+|...+..+..+|.++|+ |.....|++|..++
T Consensus        99 ~~~~~~~~~~~~~~~lGi~~-Dw~~~~~T~~~~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~  162 (805)
T PRK00390         99 WTYENIANMKKQLKSLGFSY-DWSREIATCDPEYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDG  162 (805)
T ss_pred             HHHHHHHHHHHHHHHhCCcc-cCCCCeecCCHHHHHHHHHHHHHHHHCCCEEEecCEEEecCCcC
Confidence            46789999999999999973 4    333444799999999999999999 99999999997664

>TIGR00422 valS valyl-tRNA synthetase

Probab=96.44  E-value=0.0042  Score=78.07  Aligned_cols=43  Identities=21%  Similarity=0.315  Sum_probs=38.7

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|+.|.|++|.|.-.-++.+-++++..             .+|+|||||+||+
T Consensus       478 P~d~~~~G~Dii~fw~~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKS~GN~  533 (861)
T TIGR00422       478 PTDLLVTGYDIIFFWVARMIFRSLALTGQVPFKEVYIHGLVRDEQGRKMSKSLGNV  533 (861)
T ss_pred             CcceeecchhhhhHHHHHHHHHHHHhcCCCchheEEEeeEEECCCCCCCCcCCCCC
Confidence            579999999999999999999998887653             3799999999999

The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=96.42  E-value=0.0029  Score=72.03  Aligned_cols=66  Identities=14%  Similarity=0.113  Sum_probs=42.6

Q ss_pred             CCcCCCCCCCcccCCCCCCCCCCcceeEeeccC-ccccccc-------c-c---cCCccccccccccEEEccc-chhhcc
Q psy6851         188 EVRGYPPWPARIEGLADETPNRLKYHIFFYGTR-ETGICRQ-------D-E---LFPYTEFKDKYGKVRVHLS-QKQQSL  254 (948)
Q Consensus       188 Ep~wespWg~~~~~m~~~~~GRPGWHIEcLG~~-dih~GG~-------D-L---~FPHHEne~h~G~l~i~ge-KMSKSL  254 (948)
                      ...|..-|+.+|.        --|=.+|.+|.. ..+||..       + .   .-|+|   ..+|++.+.|. |||||+
T Consensus       212 KL~Wr~dW~~rW~--------~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~ilg~~~P~~---~~ye~V~l~gg~KMSKSk  280 (353)
T cd00674         212 KLTWRVDWPMRWA--------ILGVDFEPFGKDHASAGGSYDTGKEIAREIFGGEPPVP---VMYEFIGLKGGGKMSSSK  280 (353)
T ss_pred             ccCCCCCchhhhh--------hcCCCEEeeCccccccccHHHHHHHHHHHHhCCCCCeE---EEeeeEEeCCCCccCCCC
Confidence            4578888887662        234445666654 2232211       1 1   11544   55689999876 999999


Q ss_pred             hhHHHHHHHH
Q psy6851         255 KLVVIMKEFF  264 (948)
Q Consensus       255 GN~vti~ef~  264 (948)
                      ||+|++.+++
T Consensus       281 GnvI~~~dll  290 (353)
T cd00674         281 GNVITPSDWL  290 (353)
T ss_pred             CCcCCHHHHH
Confidence            9999999875

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>PLN02959 aminoacyl-tRNA ligase

Probab=96.41  E-value=0.0018  Score=82.96  Aligned_cols=44  Identities=16%  Similarity=0.199  Sum_probs=39.5

Q ss_pred             CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      -++|++++|.|++|-|.-.-+..+-++++..             .+|+|||||+||+
T Consensus       670 yP~Dl~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~~~G~KMSKSkGNv  726 (1084)
T PLN02959        670 YPFDLRVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLMLNSEKMSKSTGNF  726 (1084)
T ss_pred             CCCeEEEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEecCCcCccccCCCc
Confidence            3799999999999999999999998877653             4899999999999

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family

Probab=96.37  E-value=0.0035  Score=78.59  Aligned_cols=42  Identities=19%  Similarity=0.212  Sum_probs=38.3

Q ss_pred             CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHhc
Q psy6851         432 EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN  474 (948)
Q Consensus       432 hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~~  474 (948)
                      |+++|+..||+.|+++ ..||+|.|+|...+-.-+|..+|.++
T Consensus        48 H~~~~~~~Dvi~Ry~r-m~G~~V~~~~G~D~~Glpie~~a~~~   89 (842)
T TIGR00396        48 HVRNYTITDVLSRYYR-MKGYNVLHPMGWDAFGLPAENAAIKR   89 (842)
T ss_pred             hhHHHHHHHHHHHHHH-hcCCceeccCCcCCCChHHHHHHHHc
Confidence            9999999999999999 89999999999999988888777554

The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.

>PRK05729 valS valyl-tRNA synthetase; Reviewed

Probab=96.26  E-value=0.007  Score=76.23  Aligned_cols=43  Identities=14%  Similarity=0.206  Sum_probs=38.5

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|..|.|++|.|.-.-++++.++++..             .+|+|||||+||+
T Consensus       473 P~d~~~~G~Dii~~W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G~KMSKSlGNv  528 (874)
T PRK05729        473 PTSVLVTGFDIIFFWVARMIMMGLHFTGQVPFKDVYIHGLVRDEQGRKMSKSKGNV  528 (874)
T ss_pred             CcccccccccccchHHHHHHHHHHHhcCCCchhheEEeeeEECCCCCCcccCCCCC
Confidence            679999999999999999999998876542             5899999999999

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=96.25  E-value=0.0084  Score=75.89  Aligned_cols=44  Identities=18%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      -+.|+|.+|.|.++-|.-.-+..+.++++..             .+|+|||||+||+
T Consensus       544 ~P~Dl~~~G~Di~r~Wf~~~l~~~~~~~g~~P~k~vl~HG~vld~~G~KMSKSlGNv  600 (912)
T PRK05743        544 YPADLYLEGSDQHRGWFQSSLLTSVATRGKAPYKQVLTHGFTVDGKGRKMSKSLGNV  600 (912)
T ss_pred             CCceEEEecccccchHHHHHHHHHHHhcCCCccceeEEeeeEECCCCCCCCCCCCCc
Confidence            4689999999999988888888888877654             4899999999999

>PLN02610 probable methionyl-tRNA synthetase

Probab=96.24  E-value=0.0052  Score=76.64  Aligned_cols=60  Identities=7%  Similarity=-0.084  Sum_probs=53.2

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      +++.+|.+.|.+++++|||.. |.+.|++  +|..-+..+..+|.++|+ |.....++|+.+++
T Consensus        84 e~~d~~~~~~~~~~~~l~i~~-D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~yc~~~e  146 (801)
T PLN02610         84 EICDKYHAIHKEVYDWFDISF-DKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLYCDTCQ  146 (801)
T ss_pred             HHHHHHHHHHHHHHHHcCCcc-ccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEeecCCCC
Confidence            467789999999999999985 8888888  388999999999999999 99988999999885

>KOG0437|consensus

Probab=96.08  E-value=0.016  Score=70.21  Aligned_cols=42  Identities=10%  Similarity=0.128  Sum_probs=34.6

Q ss_pred             ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHH
Q psy6851         221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKE  262 (948)
Q Consensus       221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~e  262 (948)
                      |+-++|-||+=-|-.+.                 ..+|||.++++|||||.|||.|+.+
T Consensus       665 DlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNfmTL~q  723 (1080)
T KOG0437|consen  665 DLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNFMTLEQ  723 (1080)
T ss_pred             eeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCeeeHHH
Confidence            56679999997675532                 3479999999999999999998875

>PRK13208 valS valyl-tRNA synthetase; Reviewed

Probab=95.94  E-value=0.0027  Score=79.10  Aligned_cols=43  Identities=21%  Similarity=0.200  Sum_probs=39.0

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|++|.|++|.|----++|+.++++..             .+|+|||||+||+
T Consensus       486 P~d~~~~G~Di~~~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G~KMSKS~GN~  541 (800)
T PRK13208        486 PMDLRPQGHDIIRTWLFYTILRAYLLTGKLPWKNIMISGMVLDPDGKKMSKSKGNV  541 (800)
T ss_pred             CceEEEeecchhhhHHHHHHHHHHHhcCCCCcceEEEeeEEECCCCCCCCCCCCCC
Confidence            689999999999999888999999887763             4899999999999

>PLN02381 valyl-tRNA synthetase

Probab=95.50  E-value=0.026  Score=72.59  Aligned_cols=39  Identities=8%  Similarity=0.190  Sum_probs=31.9

Q ss_pred             hHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHHHhhhc
Q psy6851         295 STRFIQTKNNVHAALCDNMDTRSALDSIRDC--ISQVNIYLR  334 (948)
Q Consensus       295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL--VraiN~yLd  334 (948)
                      ...+..+...+.++| +++++..|+.+|+++  ...+|.|++
T Consensus       780 LskL~~~i~~v~~~~-e~y~F~~A~~~l~~F~~~dl~d~Yie  820 (1066)
T PLN02381        780 LSVLNKAISKTVSSL-DAYEFSDAASTVYSWWQYQFCDVFIE  820 (1066)
T ss_pred             HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            345667889999999 799999999999998  456677775

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional

Probab=94.94  E-value=0.05  Score=69.48  Aligned_cols=42  Identities=21%  Similarity=0.259  Sum_probs=33.9

Q ss_pred             CCceeecCCCCCCC--CCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         832 PQLDIHTGGVDLKF--PHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       832 ~~~dih~GG~Dl~F--PHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      -+.|+|..|.|.++  -|.  -+.++-++++..             .+|+|||||+||+
T Consensus       582 ~PaD~~~eG~Di~rgWF~s--~ll~s~~~~~~~P~k~V~~HG~vld~~G~KMSKSlGNv  638 (961)
T PRK13804        582 WPADLYLEGSDQHRGWFNS--SLLESCGTRGRAPYKAVLTHGFTLDEKGEKMSKSLGNT  638 (961)
T ss_pred             CCceEEEEEcccccHHHHH--HHHHHHHhcCCCChhhEEEeccEECCCCCCccCCCCCc
Confidence            46899999999996  444  477888776652             4899999999999

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=94.88  E-value=0.0077  Score=72.88  Aligned_cols=44  Identities=14%  Similarity=0.000  Sum_probs=29.4

Q ss_pred             ccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHHH
Q psy6851         221 ETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEFF  264 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef~  264 (948)
                      |.-++|.|+++.|...-                ..+|+|.. +|+|||||+||+++..++.
T Consensus       516 D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi~p~~ii  576 (601)
T PF00133_consen  516 DLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVIDPEDII  576 (601)
T ss_dssp             SEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--BHHHHH
T ss_pred             ccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCcccCHHHHH
Confidence            44467899999887531                34688775 7999999999999887764

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6

Probab=94.69  E-value=0.013  Score=70.96  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=37.3

Q ss_pred             CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhHh
Q psy6851         832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKKL  876 (948)
Q Consensus       832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~l  876 (948)
                      -++|+-++|.|+++-|.--=+..+-++++..             -+|+|||||+||++
T Consensus       513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G~KMSKS~GNvi  570 (601)
T PF00133_consen  513 YPVDLYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDGRKMSKSKGNVI  570 (601)
T ss_dssp             SSBSEEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTSSB-BTTTTB--
T ss_pred             CCcccccCCccchhhHHHHhHhhccccccCCchheeeecccccccceeecccCCCccc
Confidence            3799999999999999998888888887764             47999999999994

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....

>KOG0436|consensus

Probab=94.32  E-value=0.44  Score=55.35  Aligned_cols=61  Identities=11%  Similarity=-0.019  Sum_probs=52.5

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCC
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSED  687 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssed  687 (948)
                      ++..+--.+|..-...+||.- |.+.|+|+  |+..+.+|-..+..+|+ |..+-.-+|++|.|.
T Consensus       105 e~cDr~s~~f~qL~k~~gi~y-t~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYcvsdEt  168 (578)
T KOG0436|consen  105 ELCDRISQSFRQLWKDAGIAY-TKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYCVSDET  168 (578)
T ss_pred             HHHhhhhHHHHHHHHHhCcch-hheeecCCchHHHHHHHHHHHHHhCCceeeecccceEeccccc
Confidence            456667778888888999986 89999997  99999999999999999 998777789999864

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase

Probab=94.04  E-value=0.0066  Score=59.72  Aligned_cols=42  Identities=17%  Similarity=0.144  Sum_probs=32.5

Q ss_pred             ceeEe------ecc-C-ccccccccccCCccccc---------------cccccEEEc-ccchhhcc
Q psy6851         212 YHIFF------YGT-R-ETGICRQDELFPYTEFK---------------DKYGKVRVH-LSQKQQSL  254 (948)
Q Consensus       212 WHIEc------LG~-~-dih~GG~DL~FPHHEne---------------~h~G~l~i~-geKMSKSL  254 (948)
                      ||++|      ++. . ++++||.|+.+ ||++.               +|+|+|... |.|||||+
T Consensus        78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~-h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g~KmSks~  143 (143)
T cd00802          78 YMFLQAADFLLLYETECDIHLGGSDQLG-HIELGLELLKKAGGPARPFGLTFGRVMGADGTKMSKSK  143 (143)
T ss_pred             HHHHHHHHHHHHhhCCcEEEEechhHHH-HHHHHHHHHHHhCCCCCceEEEeCCeECCCCCcCCCCC
Confidence            88987      333 2 78999999999 88853               467788874 48999985

Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed

Probab=94.02  E-value=0.085  Score=67.54  Aligned_cols=37  Identities=19%  Similarity=0.266  Sum_probs=27.8

Q ss_pred             ccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851         123 VLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN  160 (948)
Q Consensus       123 ~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~  160 (948)
                      +.|-=-+|+..+. ....+|.++|+.|....-|+++..
T Consensus       150 y~T~d~~y~~~v~-~~F~~l~~kGliyr~~~~v~wcp~  186 (975)
T PRK06039        150 YKTLDNEYMESVW-WALKQLYDKGLLYKGYRVVPYCPR  186 (975)
T ss_pred             cCcCCHHHHHHHH-HHHHHHHHCCCEEecceeeeecCC
Confidence            4444466777777 577889999999988777888765

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=93.67  E-value=1  Score=54.86  Aligned_cols=67  Identities=13%  Similarity=0.247  Sum_probs=48.2

Q ss_pred             HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-----CC-------HHHHHHHHHHHHHHHhHccccc
Q psy6851         293 ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-----PN-------QLLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       293 eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~~-------~~lL~~i~~~V~~mL~VLGL~~  360 (948)
                      +|...+..++.-+..|. +++..+.-..-|.+|+...|++-+..     .+       ..++..+...+..-|.+|||..
T Consensus       495 ~L~~~L~~fp~vl~~aa-~~~~Ph~la~YL~~LA~~Fn~fY~~~~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~  573 (577)
T COG0018         495 ELVKKLLEFPEVLEEAA-EELEPHRLANYLYDLAGSFNSFYNACPVLGAENEELRAARLALVKATRQVLKNGLDLLGIEA  573 (577)
T ss_pred             HHHHHHHHhHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhhCCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455667777777887 88999999999999999999865432     11       2244455566777899999854

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase

Probab=93.54  E-value=0.047  Score=62.44  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             ccCCCCCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchH
Q psy6851         419 EVLPNVGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDD  465 (948)
Q Consensus       419 eflP~~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDD  465 (948)
                      .++-..|+.+...    |+|.++.+|+++|+|+ ..||+|.||....|.|+
T Consensus        20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr-~~G~~v~~v~~~Dd~d~   69 (353)
T cd00674          20 KYVVASGISPSGHIHIGNFREVITADLVARALR-DLGFEVRLIYSWDDYDR   69 (353)
T ss_pred             eEEEecCCCCCCCcccCccHHHHHHHHHHHHHH-HcCCCEEEEEEEcCCCc
Confidence            3444556665543    8999999999999999 78999999999999987

Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.

>TIGR00392 ileS isoleucyl-tRNA synthetase

Probab=93.26  E-value=0.037  Score=69.78  Aligned_cols=38  Identities=18%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851         122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN  160 (948)
Q Consensus       122 ~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~  160 (948)
                      .+.|---+|...+. ....+|.++|+.|...--||++..
T Consensus       144 ~y~T~~p~y~~~~~-~~f~~l~~~gliyr~~~~v~w~p~  181 (861)
T TIGR00392       144 PYKTMDPSYEESQW-WLFKEAHEKGLLYRGLKPVYWSPR  181 (861)
T ss_pred             CcCcCCHHHHHHHH-HHHHHHHHCCCEeecceeeecCCC
Confidence            34444466777777 688899999999998888999875

The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.

>PRK14900 valS valyl-tRNA synthetase; Provisional

Probab=93.10  E-value=0.11  Score=67.05  Aligned_cols=43  Identities=14%  Similarity=0.143  Sum_probs=30.5

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|.+|.|.+|=|---=++.+-.+++.-             -+|+|||||+||+
T Consensus       491 P~d~~~~G~Dii~~W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G~KMSKSkGNv  546 (1052)
T PRK14900        491 PTSVMETGHDIIFFWVARMMMMGLHFMGEVPFRTVYLHPMVRDEKGQKMSKTKGNV  546 (1052)
T ss_pred             CchhhcccccHHhHHHHHHHHHHHHhcCCCccceeEecccEECCCCCCccCCCCCC
Confidence            468899999988765555555554333221             3899999999999

>PLN02286 arginine-tRNA ligase

Probab=93.07  E-value=1.1  Score=54.44  Aligned_cols=67  Identities=12%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-----C----CHHHHHHHHHHHHHHHhHccccc
Q psy6851         293 ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-----P----NQLLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       293 eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~----~~~lL~~i~~~V~~mL~VLGL~~  360 (948)
                      .|...+..+++.+..|. +++..+.-..-|++|++..|++-+..     .    ...++..+...+..-|.+|||..
T Consensus       497 ~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~~LA~~F~~fY~~~~Vl~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~  572 (576)
T PLN02286        497 ALGLHLLQFPEVVEEAC-TDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETSRLLLCEATAIVMRKCFHLLGITP  572 (576)
T ss_pred             HHHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHHhcCccCCCCchhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            34455667777777777 88999999999999999999866421     1    12244455566777788999854

>KOG0432|consensus

Probab=92.40  E-value=0.5  Score=58.96  Aligned_cols=39  Identities=15%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HHHhhhc
Q psy6851         295 STRFIQTKNNVHAALCDNMDTRSALDSIRDCIS--QVNIYLR  334 (948)
Q Consensus       295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVr--aiN~yLd  334 (948)
                      ...+..+.+.+...| +.+|+..|..+++.+.-  -+..|++
T Consensus       719 lsrL~~av~~~~~~~-~~~~f~~at~a~~~Fwl~~lCDVYlE  759 (995)
T KOG0432|consen  719 LSRLAEAVEEVNESL-EARNFHLATSALYAFWLYDLCDVYLE  759 (995)
T ss_pred             HHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788899999 88999999999988762  3455665

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase

Probab=92.29  E-value=0.18  Score=55.02  Aligned_cols=41  Identities=27%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             HHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851         108 TDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       108 ~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      .+.+.++|+  |+ +|+..++.|+|++.+. +++++|+++|+||.
T Consensus        55 ~~~i~~dL~wLGl-~~d~~~~qS~r~~~y~-~~~~~Li~~G~aY~   97 (240)
T cd09287          55 YDMIPEDLEWLGV-KWDEVVIASDRIELYY-EYARKLIEMGGAYV   97 (240)
T ss_pred             HHHHHHHHHHcCC-CCCCccchhccHHHHH-HHHHHHHHcCCccc
Confidence            334666666  99 8899999999999999 79999999999997

Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=91.85  E-value=0.25  Score=61.93  Aligned_cols=43  Identities=21%  Similarity=0.217  Sum_probs=29.8

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC------------------C-CCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------------Q-EGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------------~-~g~kmsKsl~n~  875 (948)
                      ++|+-.||+||+==|---=+=-..+++...                  . +|+|||||+||+
T Consensus       526 PVD~yigG~ehavlHLly~rF~Hkal~d~g~~p~~epf~~L~~qGmVl~~~g~KMSKSKgN~  587 (814)
T COG0495         526 PVDLYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMVLGEEGEKMSKSKGNV  587 (814)
T ss_pred             ChheeecchhHHHHHHHHHHHHHHHhcccCcCCCccchhhhhccceEEecCCCccccccCCC
Confidence            699999999987665443333333333221                  3 689999999999

>PLN02882 aminoacyl-tRNA ligase

Probab=91.60  E-value=0.27  Score=64.07  Aligned_cols=59  Identities=7%  Similarity=0.142  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHHhc--CCC---CCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc
Q psy6851         102 EMFKMETDKYSQFDE--TVL---PPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNA  161 (948)
Q Consensus       102 el~~~~~~~f~~dm~--nV~---~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~  161 (948)
                      ++..++.+.+.+.+.  |+.   ...+.|---+|+.-+. ....+|.++|+.|....-|+|+..-
T Consensus       121 ~~~~~~~~~~~~~~~rlG~~~D~~~~y~T~d~~~~~~v~-~~f~~l~~kGliyr~~~~v~wcp~~  184 (1159)
T PLN02882        121 SIVTRYSKEWEKTVTRTGRWIDFENDYKTMDPKFMESVW-WVFKQLFEKGLVYKGFKVMPYSTAC  184 (1159)
T ss_pred             HHHHHHHHHHHHHHHHcCcEEECCCCcCcCCHHHHHHHH-HHHHHHHHCCCEEecceeEeecCCC
Confidence            344455555554443  421   2345566678888888 7999999999999988889998753

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=91.35  E-value=0.16  Score=61.20  Aligned_cols=45  Identities=13%  Similarity=-0.048  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851         629 KHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK  674 (948)
Q Consensus       629 ~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~  674 (948)
                      ..|++.+++||+.|||. |+.++++|+|++.+.+++++|+++|+ |.
T Consensus       142 ~e~~~~I~edL~wLGi~-~d~~~~qSd~~~~y~~~a~~Li~~G~AY~  187 (560)
T TIGR00463       142 PEAYDMILEDLDWLGVK-GDEVVYQSDRIEEYYDYCRKLIEMGKAYV  187 (560)
T ss_pred             HHHHHHHHHHHHHcCCC-CCccccccccHHHHHHHHHHHHHcCCcee
Confidence            46999999999999999 69999999999999999999999999 85

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family

Probab=90.77  E-value=0.3  Score=59.06  Aligned_cols=44  Identities=25%  Similarity=0.181  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851         105 KMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       105 ~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      ..+.+++.+++.  |+. |+.++++|+|++.+. +++++||++|+||.
T Consensus       142 ~e~~~~I~edL~wLGi~-~d~~~~qSd~~~~y~-~~a~~Li~~G~AY~  187 (560)
T TIGR00463       142 PEAYDMILEDLDWLGVK-GDEVVYQSDRIEEYY-DYCRKLIEMGKAYV  187 (560)
T ss_pred             HHHHHHHHHHHHHcCCC-CCccccccccHHHHH-HHHHHHHHcCCcee
Confidence            346777777777  997 799999999999999 79999999999996

The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete

Probab=90.46  E-value=0.18  Score=60.46  Aligned_cols=44  Identities=16%  Similarity=0.114  Sum_probs=31.7

Q ss_pred             cCCCCCCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccch
Q psy6851         420 VLPNVGVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDID  464 (948)
Q Consensus       420 flP~~G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiD  464 (948)
                      ++-..|+.+...    |.|.++..|+++|.|+ ..|++|.||----|-|
T Consensus        20 ~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r-~~g~~~~~i~~~Dd~D   67 (515)
T TIGR00467        20 YTVASGITPSGHIHIGNFREVITADAIARALR-DSGSEARFIYIADNYD   67 (515)
T ss_pred             EEEecCCCCCCCccccchhhhhHHHHHHHHHH-HcCCCEEEEEEEcCCc
Confidence            333455554432    8999999999999999 6899999975443333

This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional

Probab=90.07  E-value=0.5  Score=61.87  Aligned_cols=43  Identities=23%  Similarity=0.199  Sum_probs=37.8

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+-+=|.|.+|=|=--=+..+-++++..             -+|+|||||+||+
T Consensus       673 PaD~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~dG~KMSKSlGNv  728 (1205)
T PTZ00427        673 PADFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASDGKKMSKRLKNY  728 (1205)
T ss_pred             CceEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCCCCCcccCCCCC
Confidence            689999999999999888888888888765             3899999999998

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]

Probab=89.85  E-value=0.19  Score=59.64  Aligned_cols=72  Identities=18%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             CCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccCcccccc--------ccccCCccccc-cccccEEEcc-cchhhcch
Q psy6851         186 EGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETGICR--------QDELFPYTEFK-DKYGKVRVHL-SQKQQSLK  255 (948)
Q Consensus       186 ~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~dih~GG--------~DL~FPHHEne-~h~G~l~i~g-eKMSKSLG  255 (948)
                      .|...|..-|+.+|...        |=-.|-+|..+..-||        ...+|=+---+ ..+-++.+.| .|||||.|
T Consensus       212 ~~KL~WRvdWp~RW~~l--------gVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP~~~~YE~i~lkg~~~mSsSkG  283 (521)
T COG1384         212 EGKLPWRVDWPMRWAAL--------GVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPPVPFVYEWILLKGGGKMSSSKG  283 (521)
T ss_pred             CcccccCcCccchhhcc--------CcccccCCcccccccCchHHHHHHHHHhcCCCCCCCCceEEEEecCCcccccCCC
Confidence            45567999999776322        2223446654221111        12222211111 2345778887 99999999


Q ss_pred             hHHHHHHHHH
Q psy6851         256 LVVIMKEFFL  265 (948)
Q Consensus       256 N~vti~ef~l  265 (948)
                      |+|+++|.+.
T Consensus       284 ~~i~~~dwle  293 (521)
T COG1384         284 NVISLSDWLE  293 (521)
T ss_pred             cEEcHHHHHH
Confidence            9999999863

>PLN02563 aminoacyl-tRNA ligase

Probab=88.76  E-value=0.36  Score=61.84  Aligned_cols=59  Identities=14%  Similarity=-0.050  Sum_probs=47.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      .+..+.+.|.+.|++||+.--   .+.|--.+|..-+..+..+|.++|+ |+....|++|..+
T Consensus       178 ~~~~~i~~~~~q~~~lG~s~DW~r~~~T~dp~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~  240 (963)
T PLN02563        178 TTLKNIARFRSQLKSLGFSYDWDREISTTEPEYYKWTQWIFLQLLKRGLAYQAEVPVNWCPAL  240 (963)
T ss_pred             hHHHHHHHHHHHHHHhCcEeeCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeecCCc
Confidence            356899999999999998653   2344344688889999999999999 9999899998665

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=88.27  E-value=0.65  Score=59.02  Aligned_cols=40  Identities=15%  Similarity=0.146  Sum_probs=33.9

Q ss_pred             CccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccC
Q psy6851         122 TVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF  162 (948)
Q Consensus       122 ~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f  162 (948)
                      .+.|-=-+|+..++ ....++.++|+.|...--||+..+.=
T Consensus       156 pY~Tmd~~ye~~~~-~~f~~~~~kGllyrg~Kpv~wsp~c~  195 (933)
T COG0060         156 PYKTMDPSYEESVW-WAFKELYEKGLLYRGYKPVPWSPRCE  195 (933)
T ss_pred             CeecCCHHHHHHHH-HHHHHHHHCCCeecCCeeeeecCCCC
Confidence            45666678999999 79999999999999877899987643

>KOG0433|consensus

Probab=88.14  E-value=2.6  Score=52.18  Aligned_cols=50  Identities=20%  Similarity=0.420  Sum_probs=33.8

Q ss_pred             HHHHHHHHhcCCCC---CCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEee
Q psy6851         107 ETDKYSQFDETVLP---PTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNV  159 (948)
Q Consensus       107 ~~~~f~~dm~nV~~---P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv  159 (948)
                      ...+|..+  ||..   --++|---+|+-..+ +...+|.++|+-|.+.-=||...
T Consensus       144 Q~e~F~r~--gv~aDW~n~Y~T~~~~ye~aQL-~iF~~lyekgLvyR~~KPVyWSp  196 (937)
T KOG0433|consen  144 QMEAFRRW--GVTADWENPYVTKSPSYEAAQL-DIFAKLYEKGLVYRSFKPVYWSP  196 (937)
T ss_pred             HHHHHHHh--eeeccCCCceeecChHHHHHHH-HHHHHHHhccceeccCCcceecC
Confidence            34466655  6544   235666678888888 69999999999996544455443

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases

Probab=87.54  E-value=3  Score=38.64  Aligned_cols=45  Identities=16%  Similarity=0.329  Sum_probs=38.8

Q ss_pred             hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                      +..+...+.++..++..+| +++++..|+..|+++++.+|+|+...
T Consensus        40 d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~~~~~~   84 (117)
T cd07958          40 DKELRRKLHKTIKKVTEDI-ERLRFNTAIAALMELVNALYKYKKKD   84 (117)
T ss_pred             hHHHHHHHHHHHHHHHHHH-hCCcchHHHHHHHHHHHHHHHhhccc
Confidence            4455666778889999999 78999999999999999999998754

This domain is found in leucyl tRNA synthetases (LeuRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain. In contrast to other class Ia enzymes, the anticodon is not used as an identity element in LeuRS (with exceptions such as Saccharomyces cerevisiae and some other eukaryotes). No anticodon-binding site can be defined for this family, which includes bacterial and eukaryotic mitochondrial members, as well as LeuRS from the archaeal Halobacteria. LeuRS catalyzes the transfer of leucine to the 3'-end of its tRNA.

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases

Probab=85.35  E-value=3.7  Score=38.68  Aligned_cols=45  Identities=27%  Similarity=0.355  Sum_probs=38.5

Q ss_pred             hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                      +..+...+.++..++..+| ++|++..|+..++++++.+|.|++..
T Consensus        38 d~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~n~y~~~~   82 (129)
T cd07957          38 DEELLEEAEELLEEVAEAM-EELEFRKALEEIMELARAANKYIDET   82 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHhhhccC
Confidence            4445566777889999999 79999999999999999999999743

This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed

Probab=85.26  E-value=0.51  Score=56.55  Aligned_cols=49  Identities=27%  Similarity=0.248  Sum_probs=35.1

Q ss_pred             HHHhhcCCCceeecCCCCCCCCCChhHHHHHh-ccCCCC----------CC-CccccchhhhH
Q psy6851         825 MASAVLGPQLDIHTGGVDLKFPHHDNELAQAE-GLPTHD----------QE-GKELSKGLAKK  875 (948)
Q Consensus       825 m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e-~~~~~~----------~~-g~kmsKsl~n~  875 (948)
                      |=-.+||  +|+=-+|.|+.-|++.-=.+.++ .+....          .+ |+|||||+||+
T Consensus       228 ~rW~~l~--Vd~e~~GkDh~~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G~KMSKSkGN~  288 (510)
T PRK00750        228 MRWAALG--VDFEPFGKDHASASYDTSKKIAREILGGEPPEPFVYELFLDKKGEKISKSKGNV  288 (510)
T ss_pred             HHHHHcC--CCEEeeCcccCcchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCCCcccccCCCc
Confidence            5556675  66777899999987776666666 433222          44 99999999998

>KOG0437|consensus

Probab=84.97  E-value=0.28  Score=60.08  Aligned_cols=43  Identities=23%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             CceeecCCCCCCCCCCh----hHHHHHhc-c-------CCCC-CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHD----NELAQAEG-L-------PTHD-QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~----ne~aq~e~-~-------~~~~-~~g~kmsKsl~n~  875 (948)
                      +||+-.+|-||+=-|-.    |-.|-... .       .||- .+++|||||.|||
T Consensus       663 PiDlrvsGKDLi~NHLtfflynHvAl~~~k~WPkgiraNGHLmLNsEKMSKSTGNf  718 (1080)
T KOG0437|consen  663 PIDLRVSGKDLIPNHLTFFLYNHVALFPEKKWPKGIRANGHLMLNSEKMSKSTGNF  718 (1080)
T ss_pred             ceeeeeccccccccceeEeeeehhhhcccccCccceeeCceEEecchhhccccCCe
Confidence            69999999999977765    44444331 1       1221 7999999999999

>KOG0435|consensus

Probab=83.17  E-value=3.1  Score=51.18  Aligned_cols=87  Identities=10%  Similarity=0.138  Sum_probs=54.0

Q ss_pred             ccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHHHHhhHHHh-----------------------
Q psy6851         247 LSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSSFEKWTQAD-----------------------  291 (948)
Q Consensus       247 geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~~~r~~~ad-----------------------  291 (948)
                      -+|||||.+|.+--.+.           +.+..+..|. ++|++..+.+..||.+.-                       
T Consensus       615 ~eKMSKSK~NGVdP~~~v~~yG~D~tRl~ilf~ap~~~~~nW~es~i~Gi~rwl~riw~l~~~~~~ar~~g~~~d~~~~t  694 (876)
T KOG0435|consen  615 YEKMSKSKHNGVDPADVVLEYGVDTTRLYILFAAPPRDPINWNESAIPGIKRWLQRIWALVSQILQARDDGKAKDLKKLT  694 (876)
T ss_pred             HHHhhhcccCCCCHHHHHHHhCchHHHHHHHhhCCcccccccccccchhHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence            47999999998754443           3334555666 788877666555554321                       


Q ss_pred             -------HHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851         292 -------LELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL  333 (948)
Q Consensus       292 -------~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL  333 (948)
                             ..+......+...+.+.+..+|..-.||+.++.|.+..-+..
T Consensus       695 d~~dae~~kl~~~~n~fi~~vt~~~e~~~slNtaIS~~m~ltN~l~~a~  743 (876)
T KOG0435|consen  695 DGFDAETRKLKETYNFFIKQVTEHYEVLFSLNTAISDMMGLTNALKKAL  743 (876)
T ss_pred             cccchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   011222334455666777777777788888888877554443

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains

Probab=81.57  E-value=4.6  Score=36.94  Aligned_cols=44  Identities=25%  Similarity=0.381  Sum_probs=38.7

Q ss_pred             hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                      +..+...+..+...+..+| +++.+..|+..+++++..+|.|++.
T Consensus        41 d~~l~~~~~~~~~~~~~~~-e~~~~~~a~~~i~~~~~~~n~y~~~   84 (117)
T cd07375          41 DRELLARLQEFIKRTTNAL-EALDPTTAVQELFKFTNELNWYLDE   84 (117)
T ss_pred             hHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhccHHHHH
Confidence            4556677778899999999 7999999999999999999999873

This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.

>TIGR00456 argS arginyl-tRNA synthetase

Probab=81.20  E-value=3.4  Score=50.18  Aligned_cols=59  Identities=12%  Similarity=-0.067  Sum_probs=43.1

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCeee--cccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         625 ATLPKHWEAEFHKDMADLNVLPPTVLT--RVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       625 ~~~~~~~~~~f~~dm~~L~v~~p~~~~--rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      +.+.....+.|.+++++|||.- |.+.  .-+-+-+.+-..++.|.++|+ |.. |.++++++.
T Consensus       231 ~~~~~~~l~~~~~~~~~l~V~f-D~~~~E~e~~~~~~~~~v~~~L~~~g~~~~~-Ga~~~~~~~  292 (566)
T TIGR00456       231 KRLVEYSLEGIKETLARLNIHF-DSFVWEGESVKNGMVPKVLEDLKEKGLVVED-GALWLDLTL  292 (566)
T ss_pred             HHHHHHHHHHHHHHHHHcCCce-eeeeccccccccccHHHHHHHHHHCCCEEEc-CCEEEEccc
Confidence            4556677899999999999986 6555  323344445566677889999 876 888887754

This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=80.62  E-value=3  Score=52.90  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=39.3

Q ss_pred             CCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         811 WGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       811 wg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      |...--||.=+ +....+++  +.|.=.-|-|.+|==---=|.++-.+++..             -+|+|||||+||+
T Consensus       459 wPfstlgWp~~-t~~l~~fy--Pt~llvtG~DIIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~G~KMSKS~GNv  533 (877)
T COG0525         459 WPFSTLGWPEE-TPDLKKFY--PTDLLVTGHDIIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQGRKMSKSKGNV  533 (877)
T ss_pred             ccccccCCCCc-chHHHhcC--CCccccccchhhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCCCCCCcccCCCc
Confidence            55555666655 33333333  445555677777765555555666555532             5899999999999

>KOG0432|consensus

Probab=80.31  E-value=0.8  Score=57.30  Aligned_cols=56  Identities=20%  Similarity=0.475  Sum_probs=38.8

Q ss_pred             hhhhhhcccccccCCCCCCeee--ecCCcceEEehhHHHHHhhhcCCeEEEecccccchHHHH
Q psy6851         408 EILNQCDRLRDEVLPNVGVRLE--DIEGKSYITFDILRRILSEYFNYNITYAMNITDIDDKII  468 (948)
Q Consensus       408 KLyNSldr~ReeflP~~G~~V~--D~hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi  468 (948)
                      ++-|=|...+.-+   ..+.|.  |.+.||+++.+...+-.+  ||.=..|.-++.+=|+.|+
T Consensus       213 rlVNW~~~L~sai---SdiEVe~~ei~~~t~l~vpGyd~~Ve--FG~L~~faY~v~gs~~~i~  270 (995)
T KOG0432|consen  213 RLVNWCPALRSAI---SDIEVESVEIPGRTLLSVPGYDTKVE--FGVLYSFAYPVEGSDEEIV  270 (995)
T ss_pred             ceeeechhHHhhh---hhheecceecCCCceEecCCCCccee--eeeeeEEEEeccCCCCeEE
Confidence            5566676666543   344444  448999999997666665  7877778888888888443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	948
3tqo_A	462	Structure Of The Cysteinyl-Trna Synthetase (Cyss) F		2e-27
1li5_A	461	Crystal Structure Of Cysteinyl-Trna Synthetase Leng		1e-24
3c8z_A	414	The 1.6 A Crystal Structure Of Mshc: The Rate Limit		8e-16
3sp1_A	501	Crystal Structure Of Cysteinyl-Trna Synthetase (Cys		1e-13
1n27_A	96	Solution Structure Of The Pwwp Domain Of Mouse Hepa		5e-10
3qby_A	94	Crystal Structure Of The Pwwp Domain Of Human Hepat		6e-10
3eae_A	93	Pwwp Domain Of Human Hepatoma-Derived Growth Factor		7e-10
2b8a_A	110	High Resolution Structure Of The Hdgf Pwwp Domain L		3e-08
2nlu_A	100	Domain-Swapped Dimer Of The Pwwp Module Of Human He		3e-08
1ri0_A	110	Nmr Structure Of The N-Terminal Hath Domain Of Huma		3e-08
2m16_A	97	P75/ledgf Pwwp Domain Length = 97		6e-08
4fu6_A	153	Crystal Structure Of The Psip1 Pwwp Domain Length =		8e-08

>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462

Iteration: 1
 Score =  121 bits (304), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 49/73 (67%), Positives = 58/73 (79%)
Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
           +  KR P DF LWKK+K GEP W SPWGEGRPGWHIECS  +S++LG   DIH GG+DLK
Sbjct: 175 SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLK 234
Query: 845 FPHHDNELAQAEG 857
           FPHH+NE+AQ+E 
Sbjct: 235 FPHHENEIAQSEA 247

>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461

Iteration: 1
 Score =  112 bits (280), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/69 (66%), Positives = 51/69 (73%)
Query: 787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP 846
           +KR+P DF LWK SK GEP W SPWG GRPGWHIECS M    LG   DIH GG DL FP
Sbjct: 174 DKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP 233
Query: 847 HHDNELAQA 855
           HH+NE+AQ+
Sbjct: 234 HHENEIAQS 242

>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 43/66 (65%)
Query: 793 DFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNEL 852
           D  LW+  + GEP W SP+G GRPGWH+ECS +A   +G  LDI  GG DL FPHH+   
Sbjct: 204 DALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSA 263
Query: 853 AQAEGL 858
           A AE +
Sbjct: 264 AHAESV 269

>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 788 KRSPNDFALW---KKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
           KR+  DF LW    K K  E  W SPWG G P WH+EC+ M        LDIH GGVD  
Sbjct: 205 KRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHI 264
Query: 845 FPHHDNELAQAE 856
             HH NE+A AE
Sbjct: 265 GVHHINEIAIAE 276

>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma- Derived Growth Factor, Related Protein 3 Length = 96

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPARI+ L +    P   KY IFF+GT ET      +LFPY E+KDK+GK
Sbjct: 17  AKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKEYKDKFGK 74

>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2 Length = 94

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPARI+ +AD    P   KY IFF+GT ET      +LFPY + KDKYGK
Sbjct: 14  AKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK 71

>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2 (Hdgf2) Length = 93

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPARI+ +AD    P   KY IFF+GT ET      +LFPY + KDKYGK
Sbjct: 13  AKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGK 70

>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain Length = 110

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 187 GEVRGYPPWPARI----EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPARI    E     T N  KY +FF+GT ET      +LFPY E K+K+GK
Sbjct: 18  AKMKGYPHWPARIDEMPEAAVKSTAN--KYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 75

>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human Hepatoma- Derived Growth Factor Length = 100

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 187 GEVRGYPPWPARI----EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPARI    E     T N  KY +FF+GT ET      +LFPY E K+K+GK
Sbjct: 18  AKMKGYPHWPARIDEMPEAAVKSTAN--KYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 75

>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human Hdgf Length = 110

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 187 GEVRGYPPWPARI----EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPARI    E     T N  KY +FF+GT ET      +LFPY E K+K+GK
Sbjct: 28  AKMKGYPHWPARIDEMPEAAVKSTAN--KYQVFFFGTHETAFLGPKDLFPYEESKEKFGK 85

>pdb|2M16|A Chain A, P75/ledgf Pwwp Domain Length = 97

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
            +++GYP WPAR++ + D    P   K  IFF+GT ET      ++FPY+E K+KYGK
Sbjct: 17  AKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGK 74

>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain Length = 153

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 188 EVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGK 242
           +++GYP WPAR++ + D    P   K  IFF+GT ET      ++FPY+E K+KYGK
Sbjct: 32  KMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSENKEKYGK 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	948
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	2e-43
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	2e-12
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	3e-10
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	2e-06
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	3e-43
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	8e-13
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	2e-10
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	3e-06
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	3e-42
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	6e-12
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	5e-09
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	3e-06
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	3e-41
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	1e-12
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	5e-11
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	4e-06
3qby_A	94	Hepatoma-derived growth factor-related protein 2;	3e-10
2daq_A	110	WHSC1L1 protein, isoform long; PWWP domain, struct	3e-09
1ri0_A	110	Hepatoma-derived growth factor; HDGF, HATH domain,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1khc_A	147	DNA cytosine-5 methyltransferase 3B2; five beta-sh	2e-07
3llr_A	154	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	2e-07
2l89_A	108	PWWP domain-containing protein 1; histone binding,	2e-06
1h3z_A	109	Hypothetical 62.8 kDa protein C215.07C; nuclear pr	5e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-05
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	5e-04
2gfu_A	134	DNA mismatch repair protein MSH6; PWWP domain, tud	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461

 Score =  163 bits (416), Expect = 2e-43
 Identities = 46/73 (63%), Positives = 51/73 (69%)

Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
             +KR+P DF LWK SK GEP W SPWG GRPGWHIECS M    LG   DIH GG DL 
Sbjct: 172 VDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM 231

Query: 845 FPHHDNELAQAEG 857
           FPHH+NE+AQ+  
Sbjct: 232 FPHHENEIAQSTC 244

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461

 Score = 69.9 bits (172), Expect = 2e-12
 Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
           G++++ FD++ R L  +  Y + Y  NITDIDDKIIKRA +N
Sbjct: 41  GRTFVAFDVVARYL-RFLGYKLKYVRNITDIDDKIIKRANEN 81

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461

 Score = 62.9 bits (154), Expect = 3e-10
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 7/57 (12%)

Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE-SNGSVYFNVNAFDSQPNHYYAKL 173
           +L P +  R + +I EI+    E++IA G AY   NG V F+V    +     Y  L
Sbjct: 105 ILRPDMEPRATHHIAEIIE-LTEQLIAKGHAYVADNGDVMFDVPTDPT-----YGVL 155

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
           AE HKD   LN+L P +  R + +I EI+ 
Sbjct: 94  AEMHKDFDALNILRPDMEPRATHHIAEIIE 123

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462

 Score =  163 bits (414), Expect = 3e-43
 Identities = 50/73 (68%), Positives = 59/73 (80%)

Query: 785 ASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLK 844
           +  KR P DF LWKK+K GEP W SPWGEGRPGWHIECS M+S++LG   DIH GG+DLK
Sbjct: 175 SDSKRDPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK 234

Query: 845 FPHHDNELAQAEG 857
           FPHH+NE+AQ+E 
Sbjct: 235 FPHHENEIAQSEA 247

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462

 Score = 70.6 bits (174), Expect = 8e-13
 Identities = 23/42 (54%), Positives = 30/42 (71%), Gaps = 1/42 (2%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
           G+S+I FD++ R L     Y +T+  NITDIDDKIIKRA +N
Sbjct: 44  GRSWIIFDMVVRYL-RMRGYEVTFVRNITDIDDKIIKRAGEN 84

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462

 Score = 62.9 bits (154), Expect = 2e-10
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNHYYAKL 173
           VL P    R ++Y+PEI+   I+K++ N  AY   NG V+F+V  F       Y KL
Sbjct: 108 VLSPDQEPRATQYVPEIIK-LIQKLLDNQYAYTGQNGDVFFDVRRFKD-----YGKL 158

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
              H+D   L VL P    R ++Y+PEI+ 
Sbjct: 97  QILHEDEKALRVLSPDQEPRATQYVPEIIK 126

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414

 Score =  158 bits (403), Expect = 3e-42
 Identities = 36/75 (48%), Positives = 45/75 (60%)

Query: 784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDL 843
           +   K    D  LW+  + GEP W SP+G GRPGWH+ECS +A   +G  LDI  GG DL
Sbjct: 195 DRPGKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDL 254

Query: 844 KFPHHDNELAQAEGL 858
            FPHH+   A AE +
Sbjct: 255 IFPHHEYSAAHAESV 269

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414

 Score = 67.7 bits (166), Expect = 6e-12
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
           +Y+TFD++ R+      + + Y  N+TD+DD + +RA ++
Sbjct: 60  TYLTFDLVHRLW-LDAGHTVQYVQNVTDVDDPLFERAERD 98

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414

 Score = 58.4 bits (142), Expect = 5e-09
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGS----VYFNVNAFDSQPNHYYAKL 173
           VLPP      ++ I E+V   +EK++A+G AY    +    VYF  +A        +   
Sbjct: 122 VLPPHDYVAATDAIAEVVE-MVEKLLASGAAYIVEDAEYPDVYFRADATAQ-----FGYE 175

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414

 Score = 49.9 bits (120), Expect = 3e-06
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
              F +DMA L VLPP      ++ I E+V 
Sbjct: 110 TQLFREDMAALRVLPPHDYVAATDAIAEVVE 140

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501

 Score =  157 bits (400), Expect = 3e-41
 Identities = 34/77 (44%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 784 EASEKRSPNDFALWKKSKA---GEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGG 840
               KR+  DF LW  +      E  W SPWG G P WH+EC+ M        LDIH GG
Sbjct: 201 VDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGG 260

Query: 841 VDLKFPHHDNELAQAEG 857
           VD    HH NE+A AE 
Sbjct: 261 VDHIGVHHINEIAIAEC 277

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501

 Score = 70.7 bits (174), Expect = 1e-12
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 6/56 (10%)

Query: 118 VLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKL 173
           ++ P  +   S++IP ++   ++ +    + Y SNG+VYF+ + F S     Y ++
Sbjct: 135 IVYPDKVLVASKHIPIMIE-VVKILEEKKITYFSNGNVYFDTSCFKS-----YGEM 184

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501

 Score = 64.9 bits (159), Expect = 5e-11
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 11/52 (21%)

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDI----------DDKIIKRARQN 474
            ++YI  D+L + L  +  Y + YAMNITDI          +DK+ K AR+ 
Sbjct: 61  FRTYIFGDLLIKTL-RFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREK 111

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVA 662
             F  D   LN++ P  +   S++IP ++ 
Sbjct: 124 EAFFNDCRKLNIVYPDKVLVASKHIPIMIE 153

>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A Length = 94

 Score = 57.0 bits (137), Expect = 3e-10
 Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 2/60 (3%)

Query: 187 GEVRGYPPWPARIEGLADET--PNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVR 244
            +++GYP WPARI+ +AD    P   KY IFF+GT ET      +LFPY + KDKYGK  
Sbjct: 14  AKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKDKYGKPN 73

>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Length = 110

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 189 VRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYG 241
           +  Y  WPA I         +     +   + +FF+G+ +     Q  +FPY E    + 
Sbjct: 19  LGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKSFA 78

Query: 242 KVRVHLSQK 250
           + +  +++ 
Sbjct: 79  EGQTSINKT 87

>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Length = 110

 Score = 54.0 bits (129), Expect = 5e-09
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 187 GEVRGYPPWPARIEGLADETPNRL--KYHIFFYGTRETGICRQDELFPYTEFKDKYGKVR 244
            +++GYP WPARI+ + +        KY +FF+GT ET      +LFPY E K+K+GK  
Sbjct: 28  AKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPN 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 2e-08
 Identities = 87/599 (14%), Positives = 173/599 (28%), Gaps = 165/599 (27%)

Query: 90  EAKEAQ---KKIPP--SEMFKMETD------------KYSQFDETVLPPTVLTRV----- 127
           E  E Q   K I     + F    D               + D  ++    ++       
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 128 --SEYIPEIVASYIEKI-------IANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAY 178
                  E+V  ++E++       + + +  E             S     Y +     Y
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP---------SMMTRMYIEQRDRLY 120

Query: 179 GDTKTLQEGEV-RGYPPWPAR-------------IEG--------LADETPNRLKYHIFF 216
            D +   +  V R  P    R             I+G        +A +     K     
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 217 YGTRETGI-------CRQDELF-------------PYTEFKDKYGKVRVHLSQKQQSLKL 256
                  I       C   E                +T   D    +++ +   Q  L+ 
Sbjct: 181 DF----KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 257 VVIMKEFF--LNVKDHIRNLKFPATTVSSFEKWTQADLE----LSTR------FIQTKNN 304
           ++  K +   L V  +++N K      ++F      +L     L+TR      F+     
Sbjct: 237 LLKSKPYENCLLVLLNVQNAK----AWNAF------NLSCKILLTTRFKQVTDFLSAATT 286

Query: 305 VHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQ------LLLRDIGAYVTKILTVFGC 358
            H +L  +  T +  +     +  ++   +  P +        L  I       +     
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE----SIRDGLA 342

Query: 359 IGD-VKNIGFPLGGTGVEST--NLEELVL-PYLTILSEFRDNIR-TEARL------IKST 407
             D  K++      T +ES+   LE          LS F  +       L      +  +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402

Query: 408 E---ILNQCDR--LRDEVLPNVGVRLEDIEGKSYITFDIL----RRILSEYFNYNITYAM 458
           +   ++N+  +  L ++      + +  I  +  +  +      R I+  Y N   T+  
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTF-- 459

Query: 459 NITDIDDKIIKRARQNYLFEK---HVQENEIQT------SKILKDIGEVMGAF-ESKMKL 508
              D DD I       Y +     H++  E           +  D       F E K++ 
Sbjct: 460 ---DSDDLIPPYLD-QYFYSHIGHHLKNIE-HPERMTLFRMVFLDFR-----FLEQKIRH 509

Query: 509 VTDPDKLTM-MKNILSNVQEAKQ---DISAQPEGTINNIKNVTFQKLLTAVRDPFSDWL 563
            +     +  + N L  ++  K    D   + E  +N I +   +     +   ++D L
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-07
 Identities = 101/691 (14%), Positives = 178/691 (25%), Gaps = 230/691 (33%)

Query: 377 TNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLR----DEVLPNVGVRLEDIE 432
               E    Y  ILS F D        + + +  +  D  +     E + ++ +  +D  
Sbjct: 9   FETGEHQYQYKDILSVFEDAF------VDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAV 61

Query: 433 GKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNY--LFEKHVQENEIQTSK 490
             +   F  L     E           + ++        R NY  L    ++  + Q S 
Sbjct: 62  SGTLRLFWTLLSKQEE------MVQKFVEEVL-------RINYKFLMSP-IKTEQRQPSM 107

Query: 491 ILKDIGEVMGAFESKM-KLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQ 549
           + +        +  +  +L  D            NV   +             ++     
Sbjct: 108 MTR-------MYIEQRDRLYNDNQVFAKY-----NVSRLQP---------YLKLRQA--- 143

Query: 550 KLLTAVRDPFSDWLDSLHG------SSIT-----DNSIFATLPK--HW-----EAEFHKD 591
             L  +R   +  +  + G      + +         +   +     W            
Sbjct: 144 --LLELRP--AKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 592 MADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATL---------------------PKH 630
           +  L KLL  +    +   D      +  +SI A L                      K 
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 631 WEAEFHKDMADLN--VLPPTVLTRVSEYIPEIVASAQTPKPAAAKKAESSSDDDSSSEDE 688
           W A F     +L+  +L   + TR  + + + +++A T           S D  S +   
Sbjct: 259 WNA-F-----NLSCKIL---LTTRFKQ-VTDFLSAATTTHI--------SLDHHSMTLTP 300

Query: 689 KPAVKAPAKPVAHAAE--PAAAKK---------AESSSDDDSSSEDEKPAVKTPAKPVAQ 737
                   K +    +  P              AES  D  ++ ++ K            
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-----------H 349

Query: 738 AAKPAAAKKAESSSDDDSSSEDEK---------PAVKAPAK----------------PVA 772
                     ESS +    +E  K         P+   P                   V 
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 773 QAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWH---IEC-----SV 824
           +  K   +  Q      S     L  K K           E     H   ++      + 
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKL----------ENEYALHRSIVDHYNIPKTF 459

Query: 825 MASAVLGPQLD----IHTGGVDLKFPHHDNELAQAEGLPTHDQEGKELSKG------LAK 874
            +  ++ P LD     H G       HH   L   E    H +              L +
Sbjct: 460 DSDDLIPPYLDQYFYSHIG-------HH---LKNIE----HPERMTLFRMVFLDFRFLEQ 505

Query: 875 KLKKLQ------------LTQEKKYNEYIASVQKATLHGL---LVCFCFQGLPTHDQEGK 919
           K++               L Q K Y  YI          L   ++ F    LP      +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYI-CDNDPKYERLVNAILDF----LPKI---EE 557

Query: 920 ELSKGLAKKLKKLQLTQEKK--YNEYIASVQ 948
            L       L ++ L  E +  + E    VQ
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Length = 147

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 178 YGDTKTLQEGE-----VRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDE 229
           Y D K    G+     ++G+  WPA +                 + ++G  +      D+
Sbjct: 6   YQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADK 65

Query: 230 LFPYTEFKDKYGK 242
           L     F   +  
Sbjct: 66  LVALGLFSQHFNL 78

>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} Length = 154

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 187 GEVRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKV 243
           G++RG+  WP RI                 + ++G  +  +   ++L P + F   + + 
Sbjct: 25  GKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCSAFHQA 84

Query: 244 R 244
            
Sbjct: 85  T 85

>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Length = 108

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 7/56 (12%)

Query: 189 VRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFK 237
             GYP WPA +       + L   +   + Y + F+        +++ + P  + +
Sbjct: 16  APGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSE 71

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 47.6 bits (112), Expect = 2e-05
 Identities = 18/127 (14%), Positives = 43/127 (33%), Gaps = 1/127 (0%)

Query: 665 QTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDE 724
              +    +  E++  ++S +  E  + ++       A +    + A  +  + +     
Sbjct: 12  HQLENLYFQGEETAVPENSGANTELVSGESEHST-NEADKQNEGEHARENKLEKAEGVAT 70

Query: 725 KPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQE 784
                +PA   A   + A A  A    +  S    E P+ +A  K   +     + ++Q 
Sbjct: 71  ASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130

Query: 785 ASEKRSP 791
              K + 
Sbjct: 131 DESKPAA 137

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 43.0 bits (100), Expect = 5e-04
 Identities = 20/166 (12%), Positives = 45/166 (27%), Gaps = 5/166 (3%)

Query: 658 PEIVASAQTPKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDD 717
               +   +P    A   E++    ++  +EK + +  A+  +  A+P + K+ E+  + 
Sbjct: 68  VATASETASPASNEAATTETAEAASAAKPEEKAS-EVVAETPSAEAKPKSDKETEAKPEA 126

Query: 718 DSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP 777
            +  ++ KPA +                +      +   +  E+     P          
Sbjct: 127 TNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEP----GAREDD 182

Query: 778 GDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECS 823
                      R        K SK  +    S              
Sbjct: 183 AINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGG 228

>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Length = 134

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 187 GEVRGYPPWPARIEGLADETP------NRLKYHI-FFYGTRETGICRQDELFPYTEFKDK 239
            ++ GYP WP+ +     +          ++ H+ FF  +   G   +  L PYT  K K
Sbjct: 31  AKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSK 90

Query: 240 YGKVRVHLSQKQQSLK 255
             +   H    +  + 
Sbjct: 91  EAQKGGHFYSAKPEIL 106

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 41.7 bits (97), Expect = 3e-04
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 19/86 (22%)

Query: 46  IGRPSAVKLVDKETLAK--EKEAKRLAEAEKAAEKERKKAELAAAQEAKEAQKKIPPSEM 103
           I +   +   + E++ K  E++ KRL   E  A  +  + E       ++A+K +     
Sbjct: 74  IAQADRLTQ-EPESIRKWREEQRKRL--QELDAASKVMEQEW-----REKAKKDL----- 120

Query: 104 FKMETDKYSQFDETVLPPTVLTRVSE 129
                +   +  E V    +  R+++
Sbjct: 121 ----EEWNQRQSEQVEKNKINNRIAD 142

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	948
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
3tqo_A	462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
3sp1_A	501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
1li5_A	461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
3c8z_A	414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.93
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	99.91
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	99.91
2csx_A	497	Methionyl-tRNA synthetase; ligase, riken structura	99.9
2d5b_A	500	Methionyl-tRNA synthetase; rossmann fold, class 1A	99.89
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	99.88
2x1l_A	524	Methionyl-tRNA synthetase; nucleotide-binding, pro	99.85
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	99.82
1iq0_A	592	Arginyl-tRNA synthetase; riken structural genomics	99.82
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	99.81
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.8
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.79
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.78
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	99.75
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	99.75
3u1f_A	542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	99.74
1irx_A	523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	99.73
2zue_A	629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.68
2zue_A	629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	99.65
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.61
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.61
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	99.61
4dlp_A	536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	99.58
3aii_A	553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	99.57
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	99.56
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	99.54
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	99.5
1f7u_A	607	Arginyl-tRNA synthetase; RNA-protein complex, amin	99.49
3h99_A	560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	99.49
1qtq_A	553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	99.47
2hz7_A	851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	99.44
3kfl_A	564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	99.41
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	99.29
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	99.29
1nzj_A	298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.12
2cfo_A	492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.09
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	98.79
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	98.64
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	98.62
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	98.49
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	98.49
1wz2_A	967	Leucyl-tRNA synthetase; ligase, riken structural g	98.36
1wkb_A	810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	98.34
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	98.3
2v0c_A	878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	98.29
4arc_A	880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	97.85
1ile_A	821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	97.83
1gax_A	862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	97.83
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	97.31
3al0_C	592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	97.28
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	97.21
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	97.14
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	96.92
1ffy_A	917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	96.9
3afh_A	488	Glutamyl-tRNA synthetase 2; protein-substrate comp	96.67
2o5r_A	481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	96.2
1j09_A	468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	96.0
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	95.82
3fnr_A	464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	94.62
4g6z_A	490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	87.54

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=3e-71  Score=630.84  Aligned_cols=248  Identities=40%  Similarity=0.646  Sum_probs=215.6

Q ss_pred             hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851         405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA  471 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra  471 (948)
                      |+|+||||+||.+++|.|..+.+|.         +.    |+|+||++|+|+|+|+ +.||+|.||+|+||||||||++|
T Consensus         3 m~l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr-~~Gy~V~~v~n~dD~ddKIi~~A   81 (462)
T 3tqo_A            3 MSVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLR-MRGYEVTFVRNITDIDDKIIKRA   81 (462)
T ss_dssp             CCCEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEECBBCCCHHHHHHH
T ss_pred             ceEEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHH-HcCCceEEecCcCCCCcHHHHHH
Confidence            5689999999999999998766655         33    9999999999999999 89999999999999999999999


Q ss_pred             HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851         472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL  551 (948)
Q Consensus       472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (948)
                      ++++.          .                                                                
T Consensus        82 ~~~g~----------~----------------------------------------------------------------   87 (462)
T 3tqo_A           82 GENKE----------S----------------------------------------------------------------   87 (462)
T ss_dssp             HHTTS----------C----------------------------------------------------------------
T ss_pred             HHcCC----------C----------------------------------------------------------------
Confidence            88642          0                                                                


Q ss_pred             hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851         552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW  631 (948)
Q Consensus       552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~  631 (948)
                                                                                              ..+++.+|
T Consensus        88 ------------------------------------------------------------------------~~e~a~~~   95 (462)
T 3tqo_A           88 ------------------------------------------------------------------------PAALAERF   95 (462)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    01367899


Q ss_pred             HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhh
Q psy6851         632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAK  709 (948)
Q Consensus       632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~ak  709 (948)
                      +++|++||++|||.+|+++||+|+||+.|+++|++|+++|+ |+. +|+||||+++                        
T Consensus        96 ~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~~g~Vyfdv~~------------------------  151 (462)
T 3tqo_A           96 IQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQNGDVFFDVRR------------------------  151 (462)
T ss_dssp             HHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECTTSCEEECTTT------------------------
T ss_pred             HHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEecCCcEEecccc------------------------
Confidence            99999999999999999999999999999999999999999 988 7999999998                        


Q ss_pred             hcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCC
Q psy6851         710 KAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKR  789 (948)
Q Consensus       710 k~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~  789 (948)
                             +.           .|++++.....                               .+..|+. +  ..+..|+
T Consensus       152 -------~~-----------~yg~Ls~~~~~-------------------------------~~~~g~r-~--~~~~~K~  179 (462)
T 3tqo_A          152 -------FK-----------DYGKLSHRHLD-------------------------------ELQAGAR-V--EVSDSKR  179 (462)
T ss_dssp             -------CT-----------TTTTTTTCSCC----------------------------------------------CCS
T ss_pred             -------cc-----------ccccccCCChH-------------------------------HhhccCc-c--ccccccC
Confidence                   43           68888653211                               1222321 1  1245799


Q ss_pred             CCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC-------
Q psy6851         790 SPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------  862 (948)
Q Consensus       790 ~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------  862 (948)
                      ||.||+|||++|+|||+|+||||+||||||||||||+.++||.+||||+||+||+||||+||||||+|++|++       
T Consensus       180 ~p~DF~LWK~~k~~ep~W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~FpHheneiaqs~a~~g~p~~~~w~H  259 (462)
T 3tqo_A          180 DPLDFVLWKKAKPGEPKWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFPHHENEIAQSEAGEEKPFVKLWMH  259 (462)
T ss_dssp             STTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGTTTHHHHHHHHHHHHHSSCCEEEEEE
T ss_pred             CccccceeeecCCCCCcccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccccHHHHhHHHHHHHHcCCCcceEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998876       


Q ss_pred             -----CCCccccchhhhH
Q psy6851         863 -----QEGKELSKGLAKK  875 (948)
Q Consensus       863 -----~~g~kmsKsl~n~  875 (948)
                           ++|+|||||+|||
T Consensus       260 ~g~v~~~G~KMSKSlGN~  277 (462)
T 3tqo_A          260 AGLLEINKEKMSKSLGNI  277 (462)
T ss_dssp             ECCEEETTEECCTTTTCC
T ss_pred             ccEEecCCcCccccCCCc
Confidence                 7999999999998

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=100.00  E-value=1.2e-68  Score=613.25  Aligned_cols=257  Identities=28%  Similarity=0.415  Sum_probs=188.7

Q ss_pred             HHHHHhhhhhhhhhhhhcccccccCCCC-------CCeeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccc--
Q psy6851         397 IRTEARLIKSTEILNQCDRLRDEVLPNV-------GVRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDI--  463 (948)
Q Consensus       397 iR~~AR~~~~LKLyNSldr~ReeflP~~-------G~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDi--  463 (948)
                      +|......++|+||||+||.+++|.|..       |++|+|.    |+|+||+||||+|+|+ +.||+|.||||||||  
T Consensus        14 ~~~~~~~~m~l~lyntltr~ke~f~p~~~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr-~~Gy~V~~v~niTDvGh   92 (501)
T 3sp1_A           14 AQTQGPGSMILKLYNTRTKDFSELTNFENVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLR-FLGYKVNYAMNITDIGH   92 (501)
T ss_dssp             --------CCEEEEETTTTEEEEECCCSCEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHH-HHTCCEEEEEEEBCSCC
T ss_pred             ccccCCCCCeEEEEECCCCccccccccCcceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHH-HcCCceeEEeeeccccc
Confidence            4566666778999999999999999964       4555554    9999999999999999 999999999999999  


Q ss_pred             --------hHHHHHHHHhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccC
Q psy6851         464 --------DDKIIKRARQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQ  535 (948)
Q Consensus       464 --------DDKIi~ra~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  535 (948)
                              |||||++|+++++        .         +                                        
T Consensus        93 ltG~~DehddKI~~~A~~~g~--------~---------~----------------------------------------  115 (501)
T 3sp1_A           93 LTGDLDDGEDKVAKTAREKGL--------T---------V----------------------------------------  115 (501)
T ss_dssp             C-------------------C--------C---------H----------------------------------------
T ss_pred             ccCCCCCCCcHHHHHHHHcCC--------C---------H----------------------------------------
Confidence                    9999999998642        0         0                                        


Q ss_pred             CCCccccccchhhhhhhhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccC
Q psy6851         536 PEGTINNIKNVTFQKLLTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHG  615 (948)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g  615 (948)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (501)
T 3sp1_A          116 --------------------------------------------------------------------------------  115 (501)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccccccHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccC
Q psy6851         616 SSITDNSIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKA  694 (948)
Q Consensus       616 ~~~~~~~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~  694 (948)
                               .+++++|++.|++||++|||.+|+.+||+|+||++|+++|++|+++|+ |+.+|+||||+++         
T Consensus       116 ---------~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~~~i~~L~~kG~aY~~~g~Vyf~v~~---------  177 (501)
T 3sp1_A          116 ---------YEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMIEVVKILEEKKITYFSNGNVYFDTSC---------  177 (501)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHTTCEEEETTEEEECGGG---------
T ss_pred             ---------HHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHHHHHHHHHHCCCEEEeCCcEEecCCc---------
Confidence                     136789999999999999999999999999999999999999999999 9999999999988         


Q ss_pred             CCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhc
Q psy6851         695 PAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQA  774 (948)
Q Consensus       695 ~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~  774 (948)
                                            +.           .|++++.....           +                   .+.
T Consensus       178 ----------------------f~-----------~yG~ls~~~~~-----------~-------------------~~~  194 (501)
T 3sp1_A          178 ----------------------FK-----------SYGEMAGIDLI-----------D-------------------KDM  194 (501)
T ss_dssp             ----------------------CT-----------TTTTTTC--------------------------------------
T ss_pred             ----------------------cC-----------CccccCCCChh-----------h-------------------hhc
Confidence                                  53           68887643220           0                   112


Q ss_pred             cCCCCCCccccccCCCCCCcceeec---cCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhH
Q psy6851         775 AKPGDLSSQEASEKRSPNDFALWKK---SKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNE  851 (948)
Q Consensus       775 ~~~~~~~~~~~~~K~~~~DfaLwk~---~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne  851 (948)
                      .|+. +  +.+..|+||.||+|||+   +++++|+|+||||.||||||||||||+.++||.+||||+||.||+||||+||
T Consensus       195 ~g~r-~--~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~GrPGWhiEcsam~~~~lg~~~DIH~gG~DLifpHhene  271 (501)
T 3sp1_A          195 TLPR-V--DVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGFGYPSWHLECAAMNLEYFKDALDIHLGGVDHIGVHHINE  271 (501)
T ss_dssp             ------------CCSSTTCEEEEEECCC-----CCBCCTTCSEEECHHHHHHHHHHHHTTTCCCEEEEEGGGTTTHHHHH
T ss_pred             cCCc-c--CcccccCCchhhHhcCCCCCCCCCCceecCCCCCCCCCchHHHHHHHHHHcCCCceEEeeccccccchHHHH
Confidence            2221 1  12357999999999998   4479999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCCC------------CCCccccchhhhH
Q psy6851         852 LAQAEGLPTHD------------QEGKELSKGLAKK  875 (948)
Q Consensus       852 ~aq~e~~~~~~------------~~g~kmsKsl~n~  875 (948)
                      +||++|+++.+            ++|+|||||+|||
T Consensus       272 iAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~  307 (501)
T 3sp1_A          272 IAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNF  307 (501)
T ss_dssp             HHHHHHHHTSCCCSEEEEECCEECC----------C
T ss_pred             HHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCc
Confidence            99999998765            8999999999998

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=9.3e-64  Score=569.34  Aligned_cols=316  Identities=21%  Similarity=0.335  Sum_probs=212.3

Q ss_pred             hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCCC----
Q psy6851          95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPN----  167 (948)
Q Consensus        95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g~----  167 (948)
                      +.|+++.++++++++.|.++|.  ||.+|+++||+|+||++|+ ++|++|+++||||++ +|+|||||++|++||.    
T Consensus        83 ~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~-~~i~~L~ekG~aY~~~~g~Vyfdv~~~~~yg~Ls~~  161 (462)
T 3tqo_A           83 ENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEII-KLIQKLLDNQYAYTGQNGDVFFDVRRFKDYGKLSHR  161 (462)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHH-HHHHHHHHHTSEEECTTSCEEECTTTCTTTTTTTTC
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHH-HHHHHHHHCCCEEEecCCcEEeccccccccccccCC
Confidence            3344444445555556666666  9999999999999999999 799999999999998 8999999999999864    


Q ss_pred             ------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccccccc
Q psy6851         168 ------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQ  227 (948)
Q Consensus       168 ------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~  227 (948)
                                  ....|.+|.||+|||++++|||.|+||||.          |||||||||       ||.+ |||+||+
T Consensus       162 ~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~W~spwG~----------GrPGWHiEcsam~~~~lG~~~dih~gG~  231 (462)
T 3tqo_A          162 HLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPKWDSPWGE----------GRPGWHIECSAMSSSILGQPFDIHGGGL  231 (462)
T ss_dssp             SCC------------CCSSTTCEEEEEECCTTSCCBCCTTCS----------EEECHHHHHHHHHHHHHCSSEEEEEEEG
T ss_pred             ChHHhhccCccccccccCCccccceeeecCCCCCcccCCCCC----------CCCCCceehHHHHHHhcCCCeEEEcccc
Confidence                        012477899999999999999999999995          999999999       8998 9999999


Q ss_pred             cccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChhh
Q psy6851         228 DELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPATT  280 (948)
Q Consensus       228 DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~~  280 (948)
                      ||+|||||||                +|+|+|.++|+|||||+||+++++++          |.++++|||+ ++|+++.
T Consensus       232 Dl~FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~  311 (462)
T 3tqo_A          232 DLKFPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKEN  311 (462)
T ss_dssp             GGTTTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHH
T ss_pred             ccccHHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHH
Confidence            9999999986                67899999999999999999998875          3447899999 9999988


Q ss_pred             hH----HHHhhHHHhHHHh----HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH
Q psy6851         281 VS----SFEKWTQADLELS----TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKI  352 (948)
Q Consensus       281 l~----~~~r~~~ad~eL~----~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~m  352 (948)
                      +.    .+.||...-..+.    .....+.++|.+||+||||||.||++||++++.+|.+++... ...+..++..++.+
T Consensus       312 l~~a~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~-~~~~~~~~~~~~~~  390 (462)
T 3tqo_A          312 LENGRLALERFYLALRGLPVVNHEKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQ-IEKAAVLAAELKCL  390 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhcccc-HHHHHHHHHHHHHH
Confidence            76    3555554422211    123457889999999999999999999999999999987653 34455667889999


Q ss_pred             HhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCCeeeecC
Q psy6851         353 LTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDIE  432 (948)
Q Consensus       353 L~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~~V~D~h  432 (948)
                      +.||||....+.. |....    ...+.   ...|+.|++.|.++|+.       |.|.++|++|++| ...|+.|+|+.
T Consensus       391 ~~vlg~~~~~~~~-~~~~~----~~~~~---~~~i~~li~~R~~ar~~-------kd~~~aD~iR~~L-~~~Gi~l~D~~  454 (462)
T 3tqo_A          391 GNIFGLLQYSPEQ-FLQGA----KKEAD---VQEIKKLIDQRNEARAK-------KDWKTADQIRDQL-TDLGVAIEDSS  454 (462)
T ss_dssp             HGGGTCSCSCHHH-HC----------------------------------------------------------------
T ss_pred             HHhcCCCccchhh-hhhcc----ccccC---HHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHH-HHCCcEEEEcC
Confidence            9999997533211 21100    00011   12477788876666666       9999999999998 68999999997


Q ss_pred             CcceEE
Q psy6851         433 GKSYIT  438 (948)
Q Consensus       433 ARTyVs  438 (948)
                      .+|.|.
T Consensus       455 ~g~~w~  460 (462)
T 3tqo_A          455 DGTSWR  460 (462)
T ss_dssp             ------
T ss_pred             CCcEEE
Confidence            666553

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}

Probab=100.00  E-value=4.1e-60  Score=542.76  Aligned_cols=309  Identities=15%  Similarity=0.149  Sum_probs=222.0

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN---  167 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~---  167 (948)
                      |.+.|+++.++++++++.|.++|+  ||.+|+++||+|+||++|+ ++|++|+++||||+.+|+|||||++|++||.   
T Consensus       108 A~~~g~~~~e~a~~~~~~f~~d~~~Lgi~~d~~~~~~t~hi~~v~-~~i~~L~~kG~aY~~~g~Vyf~v~~f~~yG~ls~  186 (501)
T 3sp1_A          108 AREKGLTVYEISEFFTEAFFNDCRKLNIVYPDKVLVASKHIPIMI-EVVKILEEKKITYFSNGNVYFDTSCFKSYGEMAG  186 (501)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHH-HHHHHHHHTTCEEEETTEEEECGGGCTTTTTTTC
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCcccCcchHHHHHH-HHHHHHHHCCCEEEeCCcEEecCCccCCccccCC
Confidence            344456666666666677877777  9999999999999999999 7999999999999999999999999999764   


Q ss_pred             C--------------CccccCCcccccccc--c-cCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cc
Q psy6851         168 H--------------YYAKLVPEAYGDTKT--L-QEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ET  222 (948)
Q Consensus       168 ~--------------~YgKL~P~DFaLWK~--a-k~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-di  222 (948)
                      .              +..|.+|.||+|||+  . +++||+|+||||.          |||||||||       ||.+ ||
T Consensus       187 ~~~~~~~~~g~r~~~~~~K~~p~Df~lWk~~p~~~~~~~~W~spwG~----------GrPGWhiEcsam~~~~lg~~~DI  256 (501)
T 3sp1_A          187 IDLIDKDMTLPRVDVDKFKRNKTDFVLWFTNSKFKDQEMKWDSPWGF----------GYPSWHLECAAMNLEYFKDALDI  256 (501)
T ss_dssp             -----------------CCSSTTCEEEEEECCC-----CCBCCTTCS----------EEECHHHHHHHHHHHHTTTCCCE
T ss_pred             CChhhhhccCCccCcccccCCchhhHhcCCCCCCCCCCceecCCCCC----------CCCCchHHHHHHHHHHcCCCceE
Confidence            1              134677899999998  4 4799999999995          999999999       8988 99


Q ss_pred             ccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-c
Q psy6851         223 GICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-L  274 (948)
Q Consensus       223 h~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l  274 (948)
                      |+||.||+|||||||                +|+|+|+++|+|||||+|||+++.++           |.+++.|||+ +
T Consensus       257 H~gG~DLifpHheneiAqs~a~~g~~~~~~w~H~g~v~~~G~KMSKSlGN~it~~dll~~gyg~d~lR~~lls~~yr~~l  336 (501)
T 3sp1_A          257 HLGGVDHIGVHHINEIAIAECFLNKKWCDVFVHGEFLIMDYNKMSKSRGNFITVKDLEDQNFSPLDFRYLCLTSHYRNQL  336 (501)
T ss_dssp             EEEEGGGTTTHHHHHHHHHHHHHTSCCCSEEEEECCEECC----------CCCHHHHHHTTCCHHHHHHHHHTSCTTSCE
T ss_pred             EeeccccccchHHHHHHHHHHccCCCCCeEEEEeeeEeeCCeEccccCCCcCCHHHHHhcCCCHHHHHHHHHhccCCCCC
Confidence            999999999999986                67899999999999999999998865           2337789999 9


Q ss_pred             CCChhhhH----H----HHhhHHHhHHH----------------hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q psy6851         275 KFPATTVS----S----FEKWTQADLEL----------------STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVN  330 (948)
Q Consensus       275 ~~s~~~l~----~----~~r~~~ad~eL----------------~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN  330 (948)
                      +|+++.+.    .    ++||...-..+                ...+..+.++|.+||+||||||.||++||++++.+|
T Consensus       337 ~fs~~~l~~a~~~~~~ll~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~am~dDlnt~~al~~l~~~~~~~~  416 (501)
T 3sp1_A          337 KFSLDNLQASKIARENLINKLSYFYESLDPVDLNTLNKDLKNFGFSVEKEYYDSFVEKISFDLNVAQGLALLWEIIKSDN  416 (501)
T ss_dssp             ECCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHSCTTSCSSHHHHHHHHHHHHHHHBTSCHHHHHHHHHHHHHCSS
T ss_pred             ccCHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccccccccchhhhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence            99998775    4    55555432211                123456788999999999999999999999999986


Q ss_pred             hhhcCCCCHHHHHHHHHHHHHHHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy6851         331 IYLRGTPNQLLLRDIGAYVTKILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEIL  410 (948)
Q Consensus       331 ~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLy  410 (948)
                      .      ....   +...++.++.||||......  +....  ...    +.+.+.|+.|++.|.++|+.       |.|
T Consensus       417 ~------~~~~---~~~~~~~~~~vlGl~~~~~~--~~~~~--~~~----~~~~~~i~~li~~R~~ar~~-------kd~  472 (501)
T 3sp1_A          417 L------SFVS---KLRLAFIFDEIMSLNLREEI--LKNLQ--NHD----VVIDENMKALIEERRIAKCE-------KNF  472 (501)
T ss_dssp             S------CHHH---HHHHHHHHHHHHCCCHHHHH--HHHHT--TSC----CCCCHHHHHHHHHHHHHHHT-------TCH
T ss_pred             c------CHHH---HHHHHHHHHHHcCCCcccch--hhccc--ccc----hhhHHHHHHHHHHHHHHHHc-------cCH
Confidence            2      1111   23678888999999643210  10000  000    01123588888887777666       899


Q ss_pred             hhhcccccccCCCCCCeeeecCCcceE
Q psy6851         411 NQCDRLRDEVLPNVGVRLEDIEGKSYI  437 (948)
Q Consensus       411 NSldr~ReeflP~~G~~V~D~hARTyV  437 (948)
                      .++|++|++| ...|+.|+|+..+|-|
T Consensus       473 ~~aD~iRd~L-~~~Gi~l~D~~~g~~w  498 (501)
T 3sp1_A          473 KRADEIRDFF-AKKGFVLVDTKEGTKV  498 (501)
T ss_dssp             HHHHHHHHHH-HHTTCCCC--------
T ss_pred             HHHHHHHHHH-HHCCcEEEEcCCCcEE
Confidence            9999999997 6899999999666554

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=100.00  E-value=3.6e-59  Score=532.43  Aligned_cols=246  Identities=39%  Similarity=0.669  Sum_probs=208.7

Q ss_pred             hhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHHh
Q psy6851         407 TEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQ  473 (948)
Q Consensus       407 LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~~  473 (948)
                      |+||||+||.+++|.|..+..|.         +.    |+|++|++|+|+|+|+ +.||+|+||+||||+|||||.||++
T Consensus         2 l~~ynt~t~~~~~f~p~~~~~v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr-~~G~~V~~v~~~tD~d~ki~~~A~~   80 (461)
T 1li5_A            2 LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYKLKYVRNITDIDDKIIKRANE   80 (461)
T ss_dssp             CEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHH-HHTCEEEEEECBBCCSHHHHHHHHH
T ss_pred             cEEEeCCCCCccccccCCCCCeeEEEcCCcCCCCCcccccHHHHHHHHHHHHHH-HcCCCEEEeecCCCCcHHHHHHHHH
Confidence            78999999999999998776555         32    9999999999999999 9999999999999999999999998


Q ss_pred             cchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhhh
Q psy6851         474 NYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLLT  553 (948)
Q Consensus       474 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  553 (948)
                      ++.          .                                                                  
T Consensus        81 ~g~----------~------------------------------------------------------------------   84 (461)
T 1li5_A           81 NGE----------S------------------------------------------------------------------   84 (461)
T ss_dssp             TTC----------C------------------------------------------------------------------
T ss_pred             cCC----------C------------------------------------------------------------------
Confidence            641          0                                                                  


Q ss_pred             hccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHHH
Q psy6851         554 AVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWEA  633 (948)
Q Consensus       554 a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~~  633 (948)
                                                                                            ..+++++|++
T Consensus        85 ----------------------------------------------------------------------~~~~~~~~~~   94 (461)
T 1li5_A           85 ----------------------------------------------------------------------FVAMVDRMIA   94 (461)
T ss_dssp             ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred             ----------------------------------------------------------------------HHHHHHHHHH
Confidence                                                                                  0136789999


Q ss_pred             HHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc-CCcccccCCCCCccccccCCCCCcccccchhhhhhc
Q psy6851         634 EFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA-ESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKKA  711 (948)
Q Consensus       634 ~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~-~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk~  711 (948)
                      +|++||++|||.+|+.++|+|+|++.|+++|++|+++|+ |+. +|+|||++++                          
T Consensus        95 ~f~~~~~~LgI~~~d~~~r~t~~~~~~~~~i~~L~~~G~aY~~~~g~v~f~~~~--------------------------  148 (461)
T 1li5_A           95 EMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPT--------------------------  148 (461)
T ss_dssp             HHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGG--------------------------
T ss_pred             HHHHHHHHcCCCCCcccccccchHHHHHHHHHHHHHCCCEEEecCCCEEEeccc--------------------------
Confidence            999999999999999999999999999999999999999 998 9999999987                          


Q ss_pred             CCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCCC
Q psy6851         712 ESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRSP  791 (948)
Q Consensus       712 eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~~  791 (948)
                           +.           .|++++....            +                   .+..|+. +.  ....|++|
T Consensus       149 -----~~-----------~yg~lsg~~~------------~-------------------~l~~g~r-v~--~~~~k~~p  178 (461)
T 1li5_A          149 -----DP-----------TYGVLSRQDL------------D-------------------QLQAGAR-VD--VVDDKRNP  178 (461)
T ss_dssp             -----CT-----------TTTTTTTC--------------------------------------------------CCST
T ss_pred             -----cc-----------ccccccCCCH------------H-------------------HhhcCCc-cc--chhcccCc
Confidence                 32           3444432110            0                   0111111 11  13469999


Q ss_pred             CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC---------
Q psy6851         792 NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD---------  862 (948)
Q Consensus       792 ~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~---------  862 (948)
                      .||+|||.+++|+|.|+||||.||||||||||+|+.++||.++|||+||.||+||||+||+||++|++|.+         
T Consensus       179 ~Df~lwk~~~~g~~~w~s~WG~g~PgWhiecsam~~~~lg~~~dih~gG~Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g  258 (461)
T 1li5_A          179 MDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSG  258 (461)
T ss_dssp             TCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBC
T ss_pred             cceEEEccCCCCCCcccCCCCCcCCCccchhHHHHHHHhCCCceEEeccCccCchHHHHHHHHHHHhcCCCCCcEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999987655         


Q ss_pred             ---CCCccccchhhhH
Q psy6851         863 ---QEGKELSKGLAKK  875 (948)
Q Consensus       863 ---~~g~kmsKsl~n~  875 (948)
                         ++|+|||||+|||
T Consensus       259 ~v~~~G~KMSKS~GN~  274 (461)
T 1li5_A          259 MVMVDREKMSKSLGNF  274 (461)
T ss_dssp             CEEETTBCCCGGGTCC
T ss_pred             EEEECCeEccccCCCc
Confidence               7999999999998

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B

Probab=100.00  E-value=2.9e-53  Score=483.90  Aligned_cols=316  Identities=22%  Similarity=0.258  Sum_probs=208.3

Q ss_pred             hcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCCCC---
Q psy6851          95 QKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQPNH---  168 (948)
Q Consensus        95 e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g~~---  168 (948)
                      +.|++++++++++++.|.++|+  ||.+|+++||+|+|++.|+ ++|++|+++||||+. +|+|||+|++|++||.-   
T Consensus        80 ~~g~~~~~~~~~~~~~f~~~~~~LgI~~~d~~~r~t~~~~~~~-~~i~~L~~~G~aY~~~~g~v~f~~~~~~~yg~lsg~  158 (461)
T 1li5_A           80 ENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEII-ELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQ  158 (461)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHH-HHHHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHcCCCCCcccccccchHHHHH-HHHHHHHHCCCEEEecCCCEEEecccccccccccCC
Confidence            3455555556666667777777  9999999999999999999 799999999999999 99999999999885421   


Q ss_pred             -------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-ccccccc
Q psy6851         169 -------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ETGICRQ  227 (948)
Q Consensus       169 -------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-dih~GG~  227 (948)
                                   ...|.+|.||++||..++|+|.|++|||.          |||||||||       +|.+ |||+||.
T Consensus       159 ~~~~l~~g~rv~~~~~k~~p~Df~lwk~~~~g~~~w~s~WG~----------g~PgWhiecsam~~~~lg~~~dih~gG~  228 (461)
T 1li5_A          159 DLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGA----------GRPGWHIECSAMNCKQLGNHFDIHGGGS  228 (461)
T ss_dssp             ----------------CCSTTCEEEEEECCTTSCCBCCTTCS----------EEECSSHHHHHHHHHHHCSSEEEEECBG
T ss_pred             CHHHhhcCCcccchhcccCccceEEEccCCCCCCcccCCCCC----------cCCCccchhHHHHHHHhCCCceEEeccC
Confidence                         01244578999999999999999999995          999999999       5877 9999999


Q ss_pred             cccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cCCChhh
Q psy6851         228 DELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LKFPATT  280 (948)
Q Consensus       228 DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~~s~~~  280 (948)
                      ||+||||+|+                +|+|+|+++|+|||||+||+|++.++          |.+++.|||+ ++|+++.
T Consensus       229 Dl~fpH~~~~~aq~~a~~g~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~dll~~~g~dalR~~ll~~~~~~~~~fs~~~  308 (461)
T 1li5_A          229 DLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEEN  308 (461)
T ss_dssp             GGTTTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHH
T ss_pred             ccCchHHHHHHHHHHHhcCCCCCcEEEEeeEEEECCeEccccCCCccChhHHhhhCCHHHHHHHHHcCCcCCCCCCCHHH
Confidence            9999999975                67899999999999999999999875          2336789999 9999987


Q ss_pred             hH----HHHhhHHHhHHHh-----HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q psy6851         281 VS----SFEKWTQADLELS-----TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTK  351 (948)
Q Consensus       281 l~----~~~r~~~ad~eL~-----~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~  351 (948)
                      +.    .+.|+...-..+.     ..+.++.+.|.+||+||||||.|+++|+++++.+|+|++. . ...+..++.+++.
T Consensus       309 l~~~~~~l~rl~n~~~~~~~~~~~d~l~~~~~~~~~am~dd~n~~~Al~~l~~l~~~~N~~~~~-~-~~~~~~~~~~~~~  386 (461)
T 1li5_A          309 LKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-D-MAAANAMASHLRK  386 (461)
T ss_dssp             HHHHHHHHHHHHHHHTTCCTTSCCCSCHHHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-C-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHhc-c-HHHHHHHHHHHHH
Confidence            65    3445443211110     0235678899999999999999999999999999999865 2 3455566788999


Q ss_pred             HHhHcccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCCCeeeec
Q psy6851         352 ILTVFGCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTEARLIKSTEILNQCDRLRDEVLPNVGVRLEDI  431 (948)
Q Consensus       352 mL~VLGL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~AR~~~~LKLyNSldr~ReeflP~~G~~V~D~  431 (948)
                      ++.||||....+. +|...+.  .+..+.   ...|+.|++.|.++|+.       |.|..+|++|++| ...|+.|+|+
T Consensus       387 ~~~~lG~~~~~~~-~~~~~~~--~~~~~~---~~~~~~l~~~r~~ar~~-------k~~~~aD~iR~~l-~~~gi~~~d~  452 (461)
T 1li5_A          387 LSAVLGLLEQEPE-AFLQSGA--QADDSE---VAEIEALIQQRLDARKA-------KDWAAADAARDRL-NEMGIVLEDG  452 (461)
T ss_dssp             HHTTTTCSCSCHH-HHC---------------------------------------------------------------
T ss_pred             HHHHcCCCccChh-hhhhccc--cccccc---HHHHHHHHHHHHHHHhc-------cCHHHHHHHHHHH-HHCCCEEEEc
Confidence            9999999532111 1211000  001100   01267788877666665       8999999999987 7899999999


Q ss_pred             CCcceE
Q psy6851         432 EGKSYI  437 (948)
Q Consensus       432 hARTyV  437 (948)
                      ..+|-|
T Consensus       453 ~~g~~w  458 (461)
T 1li5_A          453 PQGTTW  458 (461)
T ss_dssp             ------
T ss_pred             CCCcEE
Confidence            666655

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=100.00  E-value=6.1e-53  Score=474.97  Aligned_cols=250  Identities=31%  Similarity=0.522  Sum_probs=196.2

Q ss_pred             hhhhhhhhhcccccccCCCCCCeee---------ec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHH
Q psy6851         405 KSTEILNQCDRLRDEVLPNVGVRLE---------DI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRA  471 (948)
Q Consensus       405 ~~LKLyNSldr~ReeflP~~G~~V~---------D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra  471 (948)
                      +.++||||+++.+++|.| .| .|.         +.    |+|+||.+|+|+|+|+ +.||+|.||||+||+|||||.+|
T Consensus        19 ~~~~lynt~~~~~~~f~p-~~-~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr-~~G~~V~~~~~~dd~g~ki~~~A   95 (414)
T 3c8z_A           19 PALRLFDSADRQVRPVTP-GP-TATMYVCGITPYDATHLGHAATYLTFDLVHRLWL-DAGHTVQYVQNVTDVDDPLFERA   95 (414)
T ss_dssp             CCCEEEETTTTEEEECCC-CS-EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECCSCHHHHHHH
T ss_pred             CCcEEEeeccCCcccccC-CC-CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHH-HcCCCEEeCCCCCCccHHHHHHH
Confidence            356999999999999998 33 322         32    8999999999999999 78999999999999999999999


Q ss_pred             HhcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhh
Q psy6851         472 RQNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKL  551 (948)
Q Consensus       472 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  551 (948)
                      ++++.          .                                                                
T Consensus        96 ~~~g~----------~----------------------------------------------------------------  101 (414)
T 3c8z_A           96 ERDGI----------D----------------------------------------------------------------  101 (414)
T ss_dssp             HHHTC----------C----------------------------------------------------------------
T ss_pred             HHcCC----------C----------------------------------------------------------------
Confidence            87531          0                                                                


Q ss_pred             hhhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHH
Q psy6851         552 LTAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHW  631 (948)
Q Consensus       552 ~~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~  631 (948)
                                                                                              +.+++++|
T Consensus       102 ------------------------------------------------------------------------~~~~~~~~  109 (414)
T 3c8z_A          102 ------------------------------------------------------------------------WRTLGDRE  109 (414)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------HHHHHHHH
Confidence                                                                                    01356799


Q ss_pred             HHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccC----CcccccCCCCCccccccCCCCCcccccchh
Q psy6851         632 EAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAE----SSSDDDSSSEDEKPAVKAPAKPVAHAAEPA  706 (948)
Q Consensus       632 ~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~----gsvyfdvssede~pa~k~~~k~~~~~~~~~  706 (948)
                      .+.|.+||++|||.+|+.++|+|+|++.|++++++|+++|+ |+.+    |++||++++                     
T Consensus       110 ~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~---------------------  168 (414)
T 3c8z_A          110 TQLFREDMAALRVLPPHDYVAATDAIAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADA---------------------  168 (414)
T ss_dssp             HHHHHHHHHHTTCCCCSEEEEGGGCHHHHHHHHHHHHHHTSEEECSCSSCCCEEECTTS---------------------
T ss_pred             HHHHHHHHHHcCCCCCcceecccchHHHHHHHHHHHHHCCCEEeccCCcCCCEEEEchh---------------------
Confidence            99999999999999999999999999999999999999999 9988    999999988                     


Q ss_pred             hhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccc
Q psy6851         707 AAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEAS  786 (948)
Q Consensus       707 ~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~  786 (948)
                                +.           .|++++....            ++        .       ........++++   .+
T Consensus       169 ----------~~-----------~~g~l~~~~~------------~~--------~-------~~~~~~~~~~~~---~~  197 (414)
T 3c8z_A          169 ----------TA-----------QFGYESGYDR------------DT--------M-------LTLFAERGGDPD---RP  197 (414)
T ss_dssp             ----------ST-----------TTTTTTCCCH------------HH--------H-------HHHHHHTTCCTT---CT
T ss_pred             ----------hh-----------hhHhhcCCCH------------HH--------H-------HHHHhhcccccc---cc
Confidence                      43           3444332100            00        0       000001112221   35


Q ss_pred             cCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC----
Q psy6851         787 EKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD----  862 (948)
Q Consensus       787 ~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~----  862 (948)
                      .|++|.||+|||..++|+|.|+||||.||||||||||+|+.++||.++|||+||.|++||||+|++||++|+++..    
T Consensus       198 ~k~~~~D~~lWk~~~pg~~~Wda~~g~g~pgWhiec~a~~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~  277 (414)
T 3c8z_A          198 GKSDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLDIQGGGSDLIFPHHEYSAAHAESVTGERRFAR  277 (414)
T ss_dssp             TCSSTTCEEEEEECCTTSCCBCCTTCSEEECHHHHHHHHHHHHTCSCEEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEE
T ss_pred             ccCCcchhhhcCCCCCCCCCCCCCCCCCCCCccchhHHHHHHhcCCCceEEEeccccccHHHHHHHHHHHHhcCCCCcCe
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999987652    


Q ss_pred             ---------CCCccccchhhhH
Q psy6851         863 ---------QEGKELSKGLAKK  875 (948)
Q Consensus       863 ---------~~g~kmsKsl~n~  875 (948)
                               ++|+|||||+||+
T Consensus       278 ~~~h~g~v~~~G~KMSKS~GN~  299 (414)
T 3c8z_A          278 HYVHTGMIGWDGHKMSKSRGNL  299 (414)
T ss_dssp             EEEEECCBC-------------
T ss_pred             EEEEcCEEecCCeEcccccCCc
Confidence                     6999999999999

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}

Probab=100.00  E-value=3e-42  Score=388.14  Aligned_cols=250  Identities=20%  Similarity=0.217  Sum_probs=187.8

Q ss_pred             HhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeC----CcEEEeeccCCCCCC
Q psy6851          94 AQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESN----GSVYFNVNAFDSQPN  167 (948)
Q Consensus        94 ~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~----GsVYFDv~~f~~~g~  167 (948)
                      .+.|+++.+++.++.+.|.++|.  ||.+|++++|+|+|++.|+ ++|++|+++|++|+.+    |+|||++++|++|+.
T Consensus        96 ~~~g~~~~~~~~~~~~~~~~~~~~Lgi~~~d~~~r~t~~~~~~~-~~~~~L~~kG~~Y~~~~~~e~~~~f~~~~~~~~g~  174 (414)
T 3c8z_A           96 ERDGIDWRTLGDRETQLFREDMAALRVLPPHDYVAATDAIAEVV-EMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGY  174 (414)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEGGGCHHHHH-HHHHHHHHHTSEEECSCSSCCCEEECTTSSTTTTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceecccchHHHHH-HHHHHHHHCCCEEeccCCcCCCEEEEchhhhhhHh
Confidence            33466666666667777887777  9999999999999999999 7999999999999988    999999999988653


Q ss_pred             --------------------CCccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC
Q psy6851         168 --------------------HYYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR  220 (948)
Q Consensus       168 --------------------~~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~  220 (948)
                                          ..|.|.+|.||++||...+|+|.|++|||.          |||||||||       ||..
T Consensus       175 l~~~~~~~~~~~~~~~~~~~~~~~k~~~~D~~lWk~~~pg~~~Wda~~g~----------g~pgWhiec~a~~~~~~g~~  244 (414)
T 3c8z_A          175 ESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLWRAERPGEPSWPSPFGR----------GRPGWHVECSAIALTRIGTG  244 (414)
T ss_dssp             TTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEEEECCTTSCCBCCTTCS----------EEECHHHHHHHHHHHHTCSC
T ss_pred             hcCCCHHHHHHHHhhccccccccccCCcchhhhcCCCCCCCCCCCCCCCC----------CCCCccchhHHHHHHhcCCC
Confidence                                035677899999999999999999999995          999999999       7877


Q ss_pred             -ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHH
Q psy6851         221 -ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHI  271 (948)
Q Consensus       221 -dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hy  271 (948)
                       |+|+||.|++||||+|+                 +|+|+|.++|+|||||+||+|++.++           |.+++.+|
T Consensus       245 ~di~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~~~G~KMSKS~GN~v~~~~ll~~g~g~D~lR~~ll~~~~  324 (414)
T 3c8z_A          245 LDIQGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIGWDGHKMSKSRGNLVLVSQLRAQGVDPSAIRLGLFSGHY  324 (414)
T ss_dssp             EEEEEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-------------CBHHHHHHTTCCHHHHHHHHHTSCT
T ss_pred             ceEEEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEecCCeEcccccCCcCCHHHHhhccCCcchheeEEEecCc
Confidence             99999999999999974                 46789999999999999999988764           23356889


Q ss_pred             hh-cCCChhhhHH----HHhhHHHhHHHh-HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHH
Q psy6851         272 RN-LKFPATTVSS----FEKWTQADLELS-TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDI  345 (948)
Q Consensus       272 R~-l~~s~~~l~~----~~r~~~ad~eL~-~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i  345 (948)
                      ++ ++|+.+.+..    +.++...-..+. ..+.++.++|.++|+|||||+.|+++|+++++.+|.  ..+......   
T Consensus       325 ~~d~~fs~~~l~~~~~~l~~l~n~~~~~~~~~~~~~~~~v~~a~~d~~~~~~Al~~i~~~~~~~n~--~~~~~~~~~---  399 (414)
T 3c8z_A          325 REDRFWSNEVLDEANARLARWRSATALPEAPDATDVIARVRQYLADDLDTPKALAALDGWCTDALS--YGGHDTESP---  399 (414)
T ss_dssp             TSCBCCCHHHHHHHHHHHHHHHHHHTSSCBSCCHHHHHHHHHHHHBTCCHHHHHHHHHHHHHHHHH--HCCSBSSHH---
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--ccCCChhhH---
Confidence            98 9999987652    344433211100 012467889999999999999999999999999999  333322222   


Q ss_pred             HHHHHHHHhHcccc
Q psy6851         346 GAYVTKILTVFGCI  359 (948)
Q Consensus       346 ~~~V~~mL~VLGL~  359 (948)
                      ...++.+..||||.
T Consensus       400 ~~~~~~~d~vLg~~  413 (414)
T 3c8z_A          400 RLVATTVDALLGVD  413 (414)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            24577788999984

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=99.93  E-value=3.8e-28  Score=280.81  Aligned_cols=151  Identities=13%  Similarity=0.155  Sum_probs=107.2

Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCCeeecccc-cHH-HHHHHHhCcccCC----------------C-cccCCcccccCC
Q psy6851         624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSE-YIP-EIVASAQTPKPAA----------------A-KKAESSSDDDSS  684 (948)
Q Consensus       624 f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse-~i~-~ii~~i~~l~~~g----------------~-Y~~~gsvyfdvs  684 (948)
                      +.+++++|++.|.+||+.||| .|+.+ |+|+ |++ .+.++|++|+++|                + |..  + ||+++
T Consensus       100 ~~~~~~~~~~~~~~~l~~Lgi-~~D~~-~~se~~~~g~~~~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~  174 (523)
T 1irx_A          100 HESYAEHFMRKFEEEVEKLGI-EVDLL-YASELYKRGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAM  174 (523)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTC-CCEEE-EHHHHHHTTTTHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCC-CceEE-echhhccchHHHHHHHHHHHchHHHHHHHHhhccccccccccC--C-ceecc
Confidence            567899999999999999999 68999 9999 999 9999999999999                4 443  1 55433


Q ss_pred             CCCccccccCCCCCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccc
Q psy6851         685 SEDEKPAVKAPAKPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV  764 (948)
Q Consensus       685 sede~pa~k~~~k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~  764 (948)
                      .                               +.          ..++++... .                         
T Consensus       175 ~-------------------------------~~----------~~~~~~~~~-~-------------------------  187 (523)
T 1irx_A          175 V-------------------------------YC----------PEHRREAEI-I-------------------------  187 (523)
T ss_dssp             E-------------------------------EC----------TTTCCEECE-E-------------------------
T ss_pred             c-------------------------------cc----------hhhCCcccc-c-------------------------
Confidence            2                               11          011221100 0                         


Q ss_pred             cCCCCchhhccCCCCCCccccccCCCCCCcceeeccCCCCCcccCCC-CCCCCchhHHHHHHHHhhcCCCceeecCCCCC
Q psy6851         765 KAPAKPVAQAAKPGDLSSQEASEKRSPNDFALWKKSKAGEPWWSSPW-GEGRPGWHIECSVMASAVLGPQLDIHTGGVDL  843 (948)
Q Consensus       765 k~~~~~~~~~~~~~~~~~~~~~~K~~~~DfaLwk~~k~~ep~w~spw-g~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl  843 (948)
                             .         .  ..  +++.+|.+    +.|++.|.++| |.||||||||| +|...+||..+|  .+|+|+
T Consensus       188 -------~---------~--~~--~~~~~f~~----~~g~~~~~d~~~G~g~~~w~~d~-~~~~~~l~~~vd--~~G~Dh  240 (523)
T 1irx_A          188 -------E---------W--DG--GWKVKYKC----PEGHEGWVDIRSGNVKLRWRVDW-PMRWSHFGVDFE--PAGKDH  240 (523)
T ss_dssp             -------E---------E--CS--SSCEEECC----SSSCCCEECTTSSCEEECHHHHH-HHHHHHSCCCBC--CEEHHH
T ss_pred             -------c---------c--CC--CCceeeee----cCCCccccCCcCCCCCCCCCcch-HhhHHHcCCCCc--CCCcCc
Confidence                   0         0  01  14567877    57899999999 99999999999 899999997766  899999


Q ss_pred             CCCC----ChhHHHHHhccCCC-C----------CC--CccccchhhhH
Q psy6851         844 KFPH----HDNELAQAEGLPTH-D----------QE--GKELSKGLAKK  875 (948)
Q Consensus       844 ~FPH----H~ne~aq~e~~~~~-~----------~~--g~kmsKsl~n~  875 (948)
                      +|||    |.|+|+| +++ |. .          .+  |+|||||+||+
T Consensus       241 ~~~h~s~~~~~~i~~-~al-G~~~p~~~h~~~i~~~g~g~KmSKs~Gn~  287 (523)
T 1irx_A          241 LVAGSSYDTGKEIIK-EVY-GKEAPLSLMYEFVGIKGQKGKMSGSKGNV  287 (523)
T ss_dssp             HSTTSHHHHHHHHHH-HHH-CCCCCBCCEECCEEESCC---------CC
T ss_pred             cCCCcchhhHHHHHH-HHh-CCCCCeEEEEEEEEeCCCCCCCCCcCCCC
Confidence            9999    8999998 343 32 1          44  99999999998

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=99.91  E-value=3.6e-26  Score=261.79  Aligned_cols=190  Identities=18%  Similarity=0.111  Sum_probs=111.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccccc
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA  703 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~  703 (948)
                      ++++|.+.|.++|++||| .++.++|+++  |++.|+.++++|.++|+ |+....++++...+.                
T Consensus        72 ~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~----------------  134 (497)
T 2csx_A           72 LVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEE----------------  134 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEC--------------------------
T ss_pred             HHHHHHHHHHHHHHHhCC-cCCCCccCCCHHHHHHHHHHHHHHHHCCCEEecceeeccCcccCe----------------
Confidence            457899999999999999 5789999999  99999999999999999 987656666655421                


Q ss_pred             chhhhhhcCCCCCCCCCCCC-CCcCcCCCCcccccccChhhhhhcCCCCCC---CCCCCCCcccccCCCCchhhccCCCC
Q psy6851         704 EPAAAKKAESSSDDDSSSED-EKPAVKTPAKPVAQAAKPAAAKKAESSSDD---DSSSEDEKPAVKAPAKPVAQAAKPGD  779 (948)
Q Consensus       704 ~~~~akk~eSSsd~~ssse~-e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~---~Sssede~p~~k~~~~~~~~~~~~~~  779 (948)
                                   +-+..+- +.+.-..++.+.-.  .         .++.   ..+ +-.+..      ......+...
T Consensus       135 -------------~~~~~~~~~~~~c~~~~~~~~~--~---------~~~~wf~~l~-~~~~~l------~~~~~~~~~~  183 (497)
T 2csx_A          135 -------------FKSEAELAEDHTCPIHQKKCEY--I---------KEPSYFFRLS-KYQDKL------LELYEKNPEF  183 (497)
T ss_dssp             -----------------------------------------------CCEEEEECTT-SSHHHH------HHHHHHCTTS
T ss_pred             -------------EccHHHhccCCCCCCCCCCCeE--E---------ecCceEEEcH-HHHHHH------HHHHHhCCCe
Confidence                         0000000 00000000000000  0         0000   000 000000      0000000000


Q ss_pred             CCccccccC--------CCCCCcceeeccCCCCCcccCCCCCCCC---chhHH---------HHHHHH---hhcCCCcee
Q psy6851         780 LSSQEASEK--------RSPNDFALWKKSKAGEPWWSSPWGEGRP---GWHIE---------CSVMAS---AVLGPQLDI  836 (948)
Q Consensus       780 ~~~~~~~~K--------~~~~DfaLwk~~k~~ep~w~spwg~GrP---gWHie---------Cs~m~~---~~lg~~~di  836 (948)
                      +  .....|        .+-.|+++.+      |.|++|||.++|   ||||+         ||+|..   .++  ++||
T Consensus       184 ~--~p~~~~~~~~~~l~~~~~Dw~isR------~~~~~~WG~~iP~~~~~~i~vW~ds~~~~~s~~~~~~~~~~--p~di  253 (497)
T 2csx_A          184 I--QPDYRRNEIISFVKQGLKDLSVTR------PRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYW--PADL  253 (497)
T ss_dssp             B--CSHHHHHHHHHHHHHCCCCEECEE------ETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHC--SCSC
T ss_pred             e--CcHHHHHHHHHHHhcCCccccccc------cCCCCCCceecCCCCCceEEEecccchhhcccCCCcchhhC--CceE
Confidence            0  000011        1223444433      679999999999   89998         999976   677  7899


Q ss_pred             ecCCCCCCCCCChhHHHHHhccCCCC------------CCCccccchhhhH
Q psy6851         837 HTGGVDLKFPHHDNELAQAEGLPTHD------------QEGKELSKGLAKK  875 (948)
Q Consensus       837 h~GG~Dl~FPHH~ne~aq~e~~~~~~------------~~g~kmsKsl~n~  875 (948)
                      |+||.|++||||.|+.||++++ |..            ++|+|||||+||+
T Consensus       254 ~~~G~D~~~~H~~~~~a~l~~~-g~~~~~~~~~~G~v~~~G~KMSKS~GN~  303 (497)
T 2csx_A          254 HLVGKDILRFHTVYWPAFLMSL-GYELPKKVFAHGWWTVEGKKMSKTLGNV  303 (497)
T ss_dssp             EEEEGGGHHHHHTHHHHHHHHH-TCCCCSCEEEECCEESSSSBCCTTTTCC
T ss_pred             EEeecchhHhHHHHHHHHHHHc-CCCCCcEEEECcEEEeCCceeCCcCCCC
Confidence            9999999999999999999875 322            6999999999999

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=99.91  E-value=5.4e-26  Score=260.05  Aligned_cols=58  Identities=12%  Similarity=-0.005  Sum_probs=50.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      ++++|.+.|.+||++||| .+|.++|+++  |++.+..++++|.++|+ |+....++++...
T Consensus        70 ~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~~~~~~  130 (500)
T 2d5b_A           70 FVDRVSGRFKRAWDLLGI-AYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSC  130 (500)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHHHhCC-cCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEecCCCc
Confidence            467899999999999999 5789999999  99999999999999999 9876555555544

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*

Probab=99.90  E-value=7.5e-24  Score=242.61  Aligned_cols=229  Identities=16%  Similarity=0.233  Sum_probs=151.8

Q ss_pred             CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeee--CCcEEEeeccCCCCCCC--
Q psy6851          97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYES--NGSVYFNVNAFDSQPNH--  168 (948)
Q Consensus        97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes--~GsVYFDv~~f~~~g~~--  168 (948)
                      |+++.+++.++.+.|.+++.  || .++.++|.|+  |++.++ +++++|+++|++|+.  .|.+|++...|-.++.-  
T Consensus        66 g~~~~~~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~-~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~  143 (497)
T 2csx_A           66 GISPKELVDRNAERFKKLWEFLKI-EYTKFIRTTDPYHVKFVQ-KVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAE  143 (497)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEC-------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCC-cCCCCccCCCHHHHHHHH-HHHHHHHHCCCEEecceeeccCcccCeEccHHHhcc
Confidence            44455555566667776666  99 6889999999  999999 799999999999986  67778887777542110  


Q ss_pred             ------------------CccccCC------------cccccc---cc-----ccCC--C-----CcCCCCCCCcccCCC
Q psy6851         169 ------------------YYAKLVP------------EAYGDT---KT-----LQEG--E-----VRGYPPWPARIEGLA  203 (948)
Q Consensus       169 ------------------~YgKL~P------------~DFaLW---K~-----ak~g--E-----p~wespWg~~~~~m~  203 (948)
                                        -|-|++.            .++...   +.     .++|  +     |.|..+||.|++   
T Consensus       144 ~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP---  220 (497)
T 2csx_A          144 DHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVP---  220 (497)
T ss_dssp             --------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEET---
T ss_pred             CCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCCCeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecC---
Confidence                              0011110            001000   00     0122  3     557889997542   


Q ss_pred             CCCCCCCcceeE---------ee---c------cCccccccccccCCccccc---------------cccccEEEcccch
Q psy6851         204 DETPNRLKYHIF---------FY---G------TRETGICRQDELFPYTEFK---------------DKYGKVRVHLSQK  250 (948)
Q Consensus       204 ~~~~GRPGWHIE---------cL---G------~~dih~GG~DL~FPHHEne---------------~h~G~l~i~geKM  250 (948)
                          +.|||||+         |.   .      +.|+|++|.|++||||+++               .|+|+|.++|+||
T Consensus       221 ----~~~~~~i~vW~ds~~~~~s~~~~~~~~~~p~di~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~~G~KM  296 (497)
T 2csx_A          221 ----FDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTVEGKKM  296 (497)
T ss_dssp             ----TEEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEESSSSBC
T ss_pred             ----CCCCceEEEecccchhhcccCCCcchhhCCceEEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEeCCcee
Confidence                34599998         41   1      2389999999999999974               4689999999999


Q ss_pred             hhcchhHHHHHHH----------HHHHH-HHHhh-cCCChhhhHH-------------HHhhHH-------------HhH
Q psy6851         251 QQSLKLVVIMKEF----------FLNVK-DHIRN-LKFPATTVSS-------------FEKWTQ-------------ADL  292 (948)
Q Consensus       251 SKSLGN~vti~ef----------~l~ls-~hyR~-l~~s~~~l~~-------------~~r~~~-------------ad~  292 (948)
                      |||+||+|++.++          |.+++ .+|++ ++|+.+.+..             +.|+..             .+.
T Consensus       297 SKS~GN~i~~~dli~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~d~  376 (497)
T 2csx_A          297 SKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGELANEIGNLYSRVVNMAHKFLGGEVSGARDE  376 (497)
T ss_dssp             CTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHSTTCBCCCCCT
T ss_pred             CCcCCCCCCHHHHHHHCCcHHHHHHHHhcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHH
Confidence            9999999987764          22255 78888 9999876532             223221             122


Q ss_pred             HHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         293 ELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       293 eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                      .+...+.++...|.++| |+|+++.|++.|+++++.+|.|++.
T Consensus       377 ~l~~~l~~~~~~v~~~~-~~~~~~~a~~~l~~l~~~~n~y~~~  418 (497)
T 2csx_A          377 EYAKIAQESIKNYENYM-EKVNFYKAIEEILKFTSYLNKYVDE  418 (497)
T ss_dssp             THHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence            34456778889999999 9999999999999999999999863

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A

Probab=99.89  E-value=8.7e-24  Score=241.83  Aligned_cols=235  Identities=11%  Similarity=0.088  Sum_probs=158.6

Q ss_pred             CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeee--CCcEEEeeccCCCCCCCCc
Q psy6851          97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYES--NGSVYFNVNAFDSQPNHYY  170 (948)
Q Consensus        97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes--~GsVYFDv~~f~~~g~~~Y  170 (948)
                      |+++.++++++.+.|.+++.  || .++.++|.|+  |++.++ +++++|+++|++|+.  .|.+|+++.+|-.++.-..
T Consensus        64 g~~~~~~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~~~-~~~~~L~~~G~iy~~~~~~~~~~~~~~~~~~~~l~~  141 (500)
T 2d5b_A           64 GEDPKAFVDRVSGRFKRAWDLLGI-AYDDFIRTTEERHKKVVQ-LVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKELVE  141 (500)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTSBT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCC-cCCCCcccCCHHHHHHHH-HHHHHHHHCCCEEecceEEecCCCcCcccCchhccC
Confidence            44444555556666666666  99 6888999999  999999 799999999999986  5777777777754221000


Q ss_pred             ------c-------------ccCC------------ccccccccc--------cCC--C-----CcCCCCCCCcccCCCC
Q psy6851         171 ------A-------------KLVP------------EAYGDTKTL--------QEG--E-----VRGYPPWPARIEGLAD  204 (948)
Q Consensus       171 ------g-------------KL~P------------~DFaLWK~a--------k~g--E-----p~wespWg~~~~~m~~  204 (948)
                            |             |++.            .+|..++..        ++|  +     |.|..+||.|+++.+.
T Consensus       142 g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSRp~~~~~WG~piP~~~~  221 (500)
T 2d5b_A          142 GLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDEN  221 (500)
T ss_dssp             TBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSCEETTEEE
T ss_pred             CcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeecccccccccCccccCCCCC
Confidence                  0             1100            022222211        122  2     3367789974431000


Q ss_pred             --------CC---CCCCcceeEe-----eccCccccccccccCCccccc---------------cccccEEE-cccchhh
Q psy6851         205 --------ET---PNRLKYHIFF-----YGTRETGICRQDELFPYTEFK---------------DKYGKVRV-HLSQKQQ  252 (948)
Q Consensus       205 --------~~---~GRPGWHIEc-----LG~~dih~GG~DL~FPHHEne---------------~h~G~l~i-~geKMSK  252 (948)
                              .+   -.--|||+||     ++. |+|++|.|++||||.++               .|+|+|.+ +|+||||
T Consensus       222 ~v~~vWfds~~~y~~~~g~~~~~~~~~~~p~-di~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~G~KMSK  300 (500)
T 2d5b_A          222 HVTFVWFDALLNYVSALDYPEGEAYRTFWPH-AWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRKMSK  300 (500)
T ss_dssp             EEECHHHHHHTHHHHTTTTTTCHHHHHHGGG-EEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTTSSCCCT
T ss_pred             CeeEEccccchhhHHHcCCCCCchHHHcCCC-eEEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCCCCcccc
Confidence                    00   0001799987     333 89999999999999974               56799999 9999999


Q ss_pred             cchhHHHHHHH----------HHHHH-HHHhh-cCCChhhhHHH-------------HhhHHH-------------hHHH
Q psy6851         253 SLKLVVIMKEF----------FLNVK-DHIRN-LKFPATTVSSF-------------EKWTQA-------------DLEL  294 (948)
Q Consensus       253 SLGN~vti~ef----------~l~ls-~hyR~-l~~s~~~l~~~-------------~r~~~a-------------d~eL  294 (948)
                      |+||+|++.++          |.+++ .+|++ ++|+.+.+...             .|....             +..+
T Consensus       301 S~GN~i~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~~~~~~~~~l~~~l~n~~~r~~~~~~~~~~~~~~~~~~~~l  380 (500)
T 2d5b_A          301 TLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRYEADLADDLGNLVQRTRAMLFRFAEGRIPEPVAGEE  380 (500)
T ss_dssp             TTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCCCCCCGG
T ss_pred             cCCCCCCHHHHHHhcCcHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Confidence            99999987764          22254 68888 99998765321             121110             0123


Q ss_pred             hHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         295 STRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       295 ~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                      ...+.++.+.|.++| |+|+++.|++.|+++++.+|.|++.
T Consensus       381 ~~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~  420 (500)
T 2d5b_A          381 LAEGTGLAGRLRPLV-RELKFHVALEEAMAYVKALNRYINE  420 (500)
T ss_dssp             GGGGGGHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence            334566788999999 9999999999999999999999874

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=99.88  E-value=2.8e-24  Score=247.66  Aligned_cols=202  Identities=16%  Similarity=0.096  Sum_probs=123.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCccccc
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAA  703 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~  703 (948)
                      ++++|.++|.++|++|||. ++.+.|+++  |++.++.++++|.++|+ |+.++.|||+++++.                
T Consensus        79 ~~~~~~~~~~~~~~~lgi~-~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~v~~~~~~~t----------------  141 (524)
T 2x1l_A           79 LARRNSDVFQRLQEKLNIS-FDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYKGWYSIRDER----------------  141 (524)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTE----------------
T ss_pred             HHHHHHHHHHHHHHHcCCc-CCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeeeeeccCccCc----------------
Confidence            4568999999999999994 689999999  99999999999999999 999999999998731                


Q ss_pred             chhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccC-hhhhhhcCCC-CCCCCCCCCCcccccCCCCchhhccCCCCCC
Q psy6851         704 EPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAK-PAAAKKAESS-SDDDSSSEDEKPAVKAPAKPVAQAAKPGDLS  781 (948)
Q Consensus       704 ~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~-~~~~k~~~ss-Sd~~Sssede~p~~k~~~~~~~~~~~~~~~~  781 (948)
                                   +-+..+- . . ...++..+...+ +.-.....+= -..  + .-.+..      ......+...+.
T Consensus       142 -------------~l~~~ev-~-~-g~~G~~c~~~~g~~v~~~~~~qwF~~l--~-~~~~~l------~~~~~~~~~~i~  196 (524)
T 2x1l_A          142 -------------FFTENET-T-E-QPDGTRIATETGAPVTWTEEQTYFFRL--S-AYTDRL------LALYEEHPEFIG  196 (524)
T ss_dssp             -------------EECGGGE-E-E-CTTSCEEETTTCCBEEEEEEEEEEECG--G-GSHHHH------HHHHHHCGGGEE
T ss_pred             -------------cccHHHh-c-c-CCCCCccccccCCcceEEecCCeEeeH--H-HHHHHH------HHHHHhCCCeeC
Confidence                         0000000 0 0 000000000000 0000000000 000  0 000000      000000000000


Q ss_pred             cc----c--cccCCCCCCcce------eeccCCCCCc-----c-cCCC----CCCCCchhHHHHHHHHhhcCCCceeecC
Q psy6851         782 SQ----E--ASEKRSPNDFAL------WKKSKAGEPW-----W-SSPW----GEGRPGWHIECSVMASAVLGPQLDIHTG  839 (948)
Q Consensus       782 ~~----~--~~~K~~~~DfaL------wk~~k~~ep~-----w-~spw----g~GrPgWHieCs~m~~~~lg~~~dih~G  839 (948)
                      .+    .  +--+++..|+++      |....|+++.     | +|+|    |.|+||   ||++|...++  ++|||+|
T Consensus       197 p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~~~~~~~yvWfds~~~~~~~~g~p~---~~~~~~~~~~--p~di~~~  271 (524)
T 2x1l_A          197 PDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPD---TESESFRRYW--PADLHMI  271 (524)
T ss_dssp             SHHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTC---TTSHHHHHHC--SCSEEEE
T ss_pred             CHHHHHHHHHHHHcCCcccceECCCCCcCccCCCCCCCEEEEecCCchHHHHHcCCCC---CchHHHHhhC--CCeEEEE
Confidence            00    0  011355678887      5444454432     4 8888    788888   8999999998  4899999


Q ss_pred             CCCCCCCCChhHHHHHhccCCCC-----------CCCccccchhhhH
Q psy6851         840 GVDLKFPHHDNELAQAEGLPTHD-----------QEGKELSKGLAKK  875 (948)
Q Consensus       840 G~Dl~FPHH~ne~aq~e~~~~~~-----------~~g~kmsKsl~n~  875 (948)
                      |.|++||||.+++||++++....           .+|+|||||+||+
T Consensus       272 G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~G~KMSKS~GN~  318 (524)
T 2x1l_A          272 GKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNRGEKMSKSIGNV  318 (524)
T ss_dssp             EGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEECSCSEETTTEES
T ss_pred             eechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeCCcccCCcCCCC
Confidence            99999999999999998752211           6999999999999

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*

Probab=99.85  E-value=1.1e-21  Score=226.19  Aligned_cols=233  Identities=12%  Similarity=0.100  Sum_probs=154.9

Q ss_pred             CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc--CCCCCCCCc
Q psy6851          97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNA--FDSQPNHYY  170 (948)
Q Consensus        97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~--f~~~g~~~Y  170 (948)
                      |+++.++++++...|.+++.  || .++.+.|.|+  |++.++ +++++|.++|++|+.+|.|||++..  |..++.-.+
T Consensus        73 g~~~~~~~~~~~~~~~~~~~~lgi-~~d~~~~t~~~~~~~~v~-~~~~~L~~~G~iY~~~~~v~~~~~~~t~l~~~ev~~  150 (524)
T 2x1l_A           73 GIPAAELARRNSDVFQRLQEKLNI-SFDRFIRTSDADHYEASK-AIWKRMADAGDIYLDAYKGWYSIRDERFFTENETTE  150 (524)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHcCC-cCCCCeecCCHHHHHHHH-HHHHHHHHCCCEEeeeeeeeccCccCccccHHHhcc
Confidence            44445555556666766666  99 6789999999  999999 7999999999999999999999875  533211001


Q ss_pred             c---c----cCCccc------------cccc-----cc--------------------cCCCCcC-----CCCCCCcccC
Q psy6851         171 A---K----LVPEAY------------GDTK-----TL--------------------QEGEVRG-----YPPWPARIEG  201 (948)
Q Consensus       171 g---K----L~P~DF------------aLWK-----~a--------------------k~gEp~w-----espWg~~~~~  201 (948)
                      |   +    ++....            ..|+     ..                    ..+-..|     ..+||.++++
T Consensus       151 g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l~Dw~iSRqr~~WG~~iP~  230 (524)
T 2x1l_A          151 QPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGLKDLSISRTTFDWGVPVPD  230 (524)
T ss_dssp             CTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCCCCEECEESSCCSSCEETT
T ss_pred             CCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCCcccceECCCCCcCccCCC
Confidence            1   0    111000            0000     00                    0111111     1258876542


Q ss_pred             CCC--------------CCCCCCcceeEe---e---ccCccccccccccCCccccc---------------cccccEEEc
Q psy6851         202 LAD--------------ETPNRLKYHIFF---Y---GTRETGICRQDELFPYTEFK---------------DKYGKVRVH  246 (948)
Q Consensus       202 m~~--------------~~~GRPGWHIEc---L---G~~dih~GG~DL~FPHHEne---------------~h~G~l~i~  246 (948)
                      -+.              .+.|+|+   ||   +   =+.|+|++|.|++||||.++               .++|+|.++
T Consensus       231 ~~~~~~yvWfds~~~~~~~~g~p~---~~~~~~~~~~p~di~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~~  307 (524)
T 2x1l_A          231 HPDHVMYVWVDALTNYLTGVGFPD---TESESFRRYWPADLHMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLNR  307 (524)
T ss_dssp             EEEEEECHHHHHHTHHHHTTTTTC---TTSHHHHHHCSCSEEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEEC
T ss_pred             CCCCEEEEecCCchHHHHHcCCCC---CchHHHHhhCCCeEEEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEeC
Confidence            110              0345665   33   1   02389999999999999974               235999999


Q ss_pred             ccchhhcchhHHHHHHH----------HHHHH-HHHhh-cCCChhhhHHH-------------HhhH-------------
Q psy6851         247 LSQKQQSLKLVVIMKEF----------FLNVK-DHIRN-LKFPATTVSSF-------------EKWT-------------  288 (948)
Q Consensus       247 geKMSKSLGN~vti~ef----------~l~ls-~hyR~-l~~s~~~l~~~-------------~r~~-------------  288 (948)
                      |+|||||+||+|++.++          |.+++ .+|++ ++|+.+.+...             .|..             
T Consensus       308 G~KMSKS~GN~v~p~d~i~~~g~DalR~~ll~~~~~~~d~~fs~~~l~~~~~~~l~n~l~n~~~r~~~~~~~~~~~~~~~  387 (524)
T 2x1l_A          308 GEKMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNEDAIIGRVNADLANELGNLAQRSLSMVAKNLGAAVPD  387 (524)
T ss_dssp             SCSEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHSTTBCCC
T ss_pred             CcccCCcCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999987764          22254 78888 88988754311             1111             


Q ss_pred             -----HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         289 -----QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       289 -----~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                           ..+..+...+.++.+.|.++| |+|+++.|++.|+++++.+|.|++.
T Consensus       388 ~~~~~~~d~~l~~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~y~~~  438 (524)
T 2x1l_A          388 PGEFTDEDTALLAAADALLERVREHF-DVPAMHLALEAIWSVLGAANRYFSA  438 (524)
T ss_dssp             CCCCCHHHHHHHHHHHTHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHh
Confidence                 012234455677889999999 9999999999999999999999863

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=99.82  E-value=6.3e-22  Score=232.18  Aligned_cols=165  Identities=12%  Similarity=0.024  Sum_probs=111.8

Q ss_pred             cccHHHHHHHHHHHHhhcCCCCCCeeeccccc--HHHHHHHHhCcccCCC-c-----ccCCcccccCCCCCccccccCCC
Q psy6851         625 ATLPKHWEAEFHKDMADLNVLPPTVLTRVSEY--IPEIVASAQTPKPAAA-K-----KAESSSDDDSSSEDEKPAVKAPA  696 (948)
Q Consensus       625 ~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~--i~~ii~~i~~l~~~g~-Y-----~~~gsvyfdvssede~pa~k~~~  696 (948)
                      ..+...+.+.|.+|+++|||.. |.++|.|+|  .+.|.+++++|.++|+ |     +.+|.+|+++++           
T Consensus       213 ~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~-----------  280 (592)
T 1iq0_A          213 REEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQKALALLEQSPHVFRPREGKYAGALVMDASP-----------  280 (592)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHHHHHHHHTTSTTEECCSSSTTTTCEEEECTT-----------
T ss_pred             HHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHHHHHHHHHHCCCcccCcccCcCCCEEEechh-----------
Confidence            5678899999999999999986 999999998  8999999999999999 9     789999998766           


Q ss_pred             CCcccccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccC
Q psy6851         697 KPVAHAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAK  776 (948)
Q Consensus       697 k~~~~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~  776 (948)
                                          +..  +.      .-+....  .+          ||                        
T Consensus       281 --------------------~g~--~~------~l~~~vi--~k----------sd------------------------  296 (592)
T 1iq0_A          281 --------------------VIP--GL------EDPFFVL--LR----------SN------------------------  296 (592)
T ss_dssp             --------------------TSC--SC------SCCEEEE--EC----------TT------------------------
T ss_pred             --------------------cCC--CC------CCCceEE--Ee----------cC------------------------
Confidence                                320  00      0000000  00          01                        


Q ss_pred             CCCCCccccccCCCCCCc--ceee-------ccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCC
Q psy6851         777 PGDLSSQEASEKRSPNDF--ALWK-------KSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPH  847 (948)
Q Consensus       777 ~~~~~~~~~~~K~~~~Df--aLwk-------~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPH  847 (948)
                       |..    .+   ...|+  ++||       ..+   ++|.+|||  ||||||||++|....++..|+||+++-++.||+
T Consensus       297 -G~~----~Y---~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~--r~~w~~~g~~~~~~~~~~~iyV~g~~h~~~~~~  363 (592)
T 1iq0_A          297 -GTA----TY---YAKDIAFQFWKMGILEGLRFR---PYENPYYP--GLRTSAPEGEAYTPKAEETINVVDVRQSHPQAL  363 (592)
T ss_dssp             -SCB----CH---HHHHHHHHHHHTTSSCCCEEE---ECCCSSCT--TCEEEEEEEEECCCCCSEEEEEEESSSCCCHHH
T ss_pred             -Cce----EE---ecchHHHHHHHhhhhhhhhhh---hhhcCcch--hhcccccCcccCCCCCCEEEEEEeccHHHHHHH
Confidence             000    00   12244  8886       333   47999997  999999999998888999999999976666665


Q ss_pred             ChhHHHHHhcc---------CCC---CCCCccccchhhhH--hhhH
Q psy6851         848 HDNELAQAEGL---------PTH---DQEGKELSKGLAKK--LKKL  879 (948)
Q Consensus       848 H~ne~aq~e~~---------~~~---~~~g~kmsKsl~n~--l~~~  879 (948)
                      +.+=+ ++-++         ..+   .++|+|||||+||+  |..+
T Consensus       364 ~~~~~-~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dl  408 (592)
T 1iq0_A          364 VRAAL-ALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEV  408 (592)
T ss_dssp             HHHHH-HHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHH
T ss_pred             HHHHH-HHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHH
Confidence            54322 11111         000   17899999999999  4554

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1

Probab=99.82  E-value=2.7e-20  Score=218.39  Aligned_cols=246  Identities=11%  Similarity=0.052  Sum_probs=173.3

Q ss_pred             HhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccccc--HHHHHHHHHHHHHHcCCee-----eeCCcEEEeeccCCC
Q psy6851          94 AQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEY--IPEIVASYIEKIIANGLAY-----ESNGSVYFNVNAFDS  164 (948)
Q Consensus        94 ~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~--IpeII~~~I~~LI~~G~AY-----es~GsVYFDv~~f~~  164 (948)
                      .+.|.. +++...+.+.|.+++.  ||.. +.++|.|+|  ++.|. ++|++|.++|++|     +.+|.+||++..|.+
T Consensus       207 ~e~g~~-~~~~~~~~~~~~~~~~~LgI~~-D~~~~es~~~~~~~v~-~~~~~L~~kG~~y~~~~g~~~G~~~~~~~~~g~  283 (592)
T 1iq0_A          207 LERGEL-REEVNRILLAQMATMHALNARY-DLLVWESDIVRAGLLQ-KALALLEQSPHVFRPREGKYAGALVMDASPVIP  283 (592)
T ss_dssp             HHTTTT-HHHHHHHHHHHHHHHHHTTCCC-SEEEEHHHHHHTTHHH-HHHHHHTTSTTEECCSSSTTTTCEEEECTTTSC
T ss_pred             CCchHH-HHHHHHHHHHHHHHHHHcCCEe-EEeccCCcccccchHH-HHHHHHHHCCCcccCcccCcCCCEEEechhcCC
Confidence            444553 8888888889988887  9965 999999999  88999 7999999999999     889999999998853


Q ss_pred             CCCCCcccc-----C------Cccc--cccc-------cccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe----ecc-
Q psy6851         165 QPNHYYAKL-----V------PEAY--GDTK-------TLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF----YGT-  219 (948)
Q Consensus       165 ~g~~~YgKL-----~------P~DF--aLWK-------~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc----LG~-  219 (948)
                      ...  -+.+     +      ..|+  .+||       ..+   +.|.+|||            |||||+||    +|. 
T Consensus       284 ~~~--l~~~vi~ksdG~~~Y~~~D~a~~~~Kl~l~~~~~~~---~~~~~p~~------------r~~w~~~g~~~~~~~~  346 (592)
T 1iq0_A          284 GLE--DPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFR---PYENPYYP------------GLRTSAPEGEAYTPKA  346 (592)
T ss_dssp             SCS--CCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEE---ECCCSSCT------------TCEEEEEEEEECCCCC
T ss_pred             CCC--CCceEEEecCCceEEecchHHHHHHHhhhhhhhhhh---hhhcCcch------------hhcccccCcccCCCCC
Confidence            110  0101     1      2344  6886       333   24677764            79999999    322 


Q ss_pred             C---ccccccccccCCcccc-------------cccc--ccEEEcccchhhcchhHHHHHHHH-----------------
Q psy6851         220 R---ETGICRQDELFPYTEF-------------KDKY--GKVRVHLSQKQQSLKLVVIMKEFF-----------------  264 (948)
Q Consensus       220 ~---dih~GG~DL~FPHHEn-------------e~h~--G~l~i~geKMSKSLGN~vti~ef~-----------------  264 (948)
                      .   +++++++++-||++.+             ..|.  |+|+++|+|||||+||+|++.+++                 
T Consensus       347 ~~~iyV~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~~~g~KMSKr~Gn~v~l~dll~~~~~~~~~~~~~~~~~  426 (592)
T 1iq0_A          347 EETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLAVSVDEVLEEATRRARAIVEEKNPD  426 (592)
T ss_dssp             SEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC----CCBHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CEEEEEEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEEcCCCcccCCCCCccCHHHHHHHHHHHHHHHHHhhCCC
Confidence            2   5788888888887653             1355  789999999999999998765433                 


Q ss_pred             ------------------HHHHHHHhh-cCCChhhhH------------HHHhhHH------------------HhHHHh
Q psy6851         265 ------------------LNVKDHIRN-LKFPATTVS------------SFEKWTQ------------------ADLELS  295 (948)
Q Consensus       265 ------------------l~ls~hyR~-l~~s~~~l~------------~~~r~~~------------------ad~eL~  295 (948)
                                        ..++.++++ ++|+.+.+.            ++.|...                  .+.+|.
T Consensus       427 ~~~~e~~a~~vg~~aiRyf~L~~~~~~~~~Fd~d~~~~~~~~~~~ylqya~aR~~sil~k~~~~~~~~~~l~~~~e~~L~  506 (592)
T 1iq0_A          427 HPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDTGPYVQYAHARAHSILRKAGEWGAPDLSQATPYERALA  506 (592)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHSCTTSCEEECHHHHHCSSSSSHHHHHHHHHHHHHHHHHHCCCCCCCGGGCCHHHHHHH
T ss_pred             CCcHHHHHHhhcHHHHHHHHHhcCCCCCCeecHHHHHHHhccchHHHHHHHHHHHHHHHhhcccCCCccCCCCHHHHHHH
Confidence                              225666766 777765432            1122211                  123344


Q ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC-------C------C-----HHHHHHHHHHHHHHHhHcc
Q psy6851         296 TRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT-------P------N-----QLLLRDIGAYVTKILTVFG  357 (948)
Q Consensus       296 ~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~-------~------~-----~~lL~~i~~~V~~mL~VLG  357 (948)
                      ..+.++.+.|..|+ ++++++.++..|++|++..|+|.+..       .      .     ..++..+...+...|.+||
T Consensus       507 ~~l~~~~~~v~~a~-~~~~p~~~~~yl~~La~~fn~fy~~~~~~~~~~~vl~~~~~~~~~RL~L~~a~~~vl~~~l~lLG  585 (592)
T 1iq0_A          507 LDLLDFEEAVLEAA-EERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSLVQSLQRTLATGLDLLG  585 (592)
T ss_dssp             HHHTTHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTTSCTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccccCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55667889999999 89999999999999999999988764       1      1     1234556667788899999


Q ss_pred             ccc
Q psy6851         358 CIG  360 (948)
Q Consensus       358 L~~  360 (948)
                      |..
T Consensus       586 i~~  588 (592)
T 1iq0_A          586 IPA  588 (592)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            864

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=99.81  E-value=6.2e-20  Score=212.02  Aligned_cols=237  Identities=14%  Similarity=0.127  Sum_probs=155.0

Q ss_pred             cCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc--C-------
Q psy6851          96 KKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNA--F-------  162 (948)
Q Consensus        96 ~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~--f-------  162 (948)
                      .|+++.++++++.+.|.+++.  ||. ++.+.|.+  +|+..++ +++.+|.++|++|...+.|||+++.  |       
T Consensus        69 ~g~~~~e~~~~~~~~~~~~~~~lgi~-~D~~~~T~~~~~~~~v~-~~f~~L~~~G~iy~~~~~v~~~~~~~~~l~d~~v~  146 (542)
T 3u1f_A           69 KQVSPYDFTTAVAGEFKKCFEQMDYS-IDYFIRTTNEQHKAVVK-ELWTKLEQKGDIYLGRYEGWYSISDESFLTPQNIT  146 (542)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHTCC-CSEEEETTCHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGGEE
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhCCc-cCcCccCCCHHHHHHHH-HHHHHHhhcCcEEecceeEEeeccCcccchhhhhh
Confidence            345555555555556665555  984 57777766  6999999 7999999999999999999999853  1       


Q ss_pred             ---CCCCCC------------------CccccCC------------ccccccccc--------cCCCC--------cCCC
Q psy6851         163 ---DSQPNH------------------YYAKLVP------------EAYGDTKTL--------QEGEV--------RGYP  193 (948)
Q Consensus       163 ---~~~g~~------------------~YgKL~P------------~DFaLWK~a--------k~gEp--------~wes  193 (948)
                         +.+|..                  .|-+++.            .++..++..        +.+-+        .|..
T Consensus       147 ~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~l~Dw~ISRq~~~~~  226 (542)
T 3u1f_A          147 DGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKGLPDLSVSRARATLH  226 (542)
T ss_dssp             EEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGT
T ss_pred             ccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhccccccCccccccCcC
Confidence               111110                  0011110            001000000        01111        2556


Q ss_pred             CCCCcccCCCC------------------CCCCCCcceeEee--------ccCccccccccccCCccccc----------
Q psy6851         194 PWPARIEGLAD------------------ETPNRLKYHIFFY--------GTRETGICRQDELFPYTEFK----------  237 (948)
Q Consensus       194 pWg~~~~~m~~------------------~~~GRPGWHIEcL--------G~~dih~GG~DL~FPHHEne----------  237 (948)
                      .||.|+++.+.                  ....+.|++.++.        -+.|+|++|.|++|+|+.++          
T Consensus       227 ~WGipiP~~~~~~~~vw~da~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~p~d~~~~G~D~~~fh~~~~~a~l~~~g~~  306 (542)
T 3u1f_A          227 NWAIPVPGNPDHXVYVWLDALTNYLTGSRLRVDESGKEVSLVDDFNELERFPADVHVIGKDILKFHAIYWPAFLLSAGLP  306 (542)
T ss_dssp             TCSCEETTEEEEEECHHHHHHTHHHHHHTEEECTTSCEEEECSSGGGTTCCSCSEEEEEGGGHHHHHTHHHHHHHHHTCC
T ss_pred             CCCCccCCCcCeeeeeeeccchhhhhhhhccccccCCcccccchhhhhcCCcceEEEecccccccccchhHHHHHhhccc
Confidence            78887765321                  0123455665542        12379999999999998864          


Q ss_pred             -----cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH-------------HHhh
Q psy6851         238 -----DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS-------------FEKW  287 (948)
Q Consensus       238 -----~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~-------------~~r~  287 (948)
                           .++|+|.++|+|||||+||+|...++           |++...+|++ ++|+.+.+..             +.|.
T Consensus       307 ~~~~v~~hg~l~~~G~KMSKSlGNvi~p~~~i~~ygaD~lR~~l~~~~~~~~d~~fs~~~~~~~~n~~l~n~l~N~~~r~  386 (542)
T 3u1f_A          307 LPKKIVAHGWWTKDRKKISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTLGNLVMRC  386 (542)
T ss_dssp             CCSCEEEECCCEETTBCCBTTTTBCCCHHHHHHHHCHHHHHHHHHHHCCTTSCCEECHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred             ccceeccccceecCCceeccccCCCCChhHHHhhcCchHHHHHHHhcCcccccccccHHHHHHHhhhHHHHHHHHHHHHH
Confidence                 46799999999999999999876653           4422355777 8888765431             1121


Q ss_pred             H-----------------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         288 T-----------------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       288 ~-----------------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                      .                 ..+..+...+.++...+.++| |+|+++.|+++|+++++.+|.|++.
T Consensus       387 ~~~~~~~~~~~~~~~~~~~~d~~il~~l~~~~~~~~~~~-~~~~~~~a~~~i~~~~~~~n~Y~~~  450 (542)
T 3u1f_A          387 TSAKINVNGEWPSPAAYTEEDESLIQLIKDLPGTADHYY-LIPDIQKAIIAVFDVLRAINAYVTD  450 (542)
T ss_dssp             HCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccCCCCccchhhHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1                 123445567788899999999 8999999999999999999999964

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=99.80  E-value=1.1e-20  Score=218.69  Aligned_cols=175  Identities=14%  Similarity=0.048  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851         630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA  708 (948)
Q Consensus       630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a  708 (948)
                      .|++.+++||+.||+.+++..+++|+|++.+.+++++|+++|+ |.     +|++..+=+ .....+.     ..|    
T Consensus        76 e~~~~I~edL~wLGl~wde~~~~qSer~~~~~~~a~~Li~~G~AY~-----c~ct~eel~-~~r~~~~-----~~g----  140 (553)
T 1qtq_A           76 EYVESIKNDVEWLGFHWSGNVRYSSDYFDQLHAYAIELINKGLAYV-----DELTPEQIR-EYRGTLT-----QPG----  140 (553)
T ss_dssp             HHHHHHHHHHHHTTCCCSSSCEEGGGGHHHHHHHHHHHHHTTSEEE-----ECCCHHHHH-HHHCCSS-----SCC----
T ss_pred             HHHHHHHHHHHHcCCCCCCCCeehcccHHHHHHHHHHHHHCCCcee-----cCCCHHHHH-HHhcccc-----cCC----
Confidence            5889999999999999999999999999999999999999999 95     444432100 0000000     000    


Q ss_pred             hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCC---C--CCC--
Q psy6851         709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP---G--DLS--  781 (948)
Q Consensus       709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~---~--~~~--  781 (948)
                              .++          .+-..++......-.                           .+..|+   |  .++  
T Consensus       141 --------~~~----------~~R~~s~ee~~~~fe---------------------------~m~~G~~~~g~~~lR~k  175 (553)
T 1qtq_A          141 --------KNS----------PYRDRSVEENLALFE---------------------------KMRAGGFEEGKACLRAK  175 (553)
T ss_dssp             --------CCC----------TTTTCCHHHHHHHHH---------------------------HHHTTCSCTTSCEEEEC
T ss_pred             --------CCC----------ccccCchhhhHhHHH---------------------------HHhCCCccCCceEEEEe
Confidence                    000          011110000000000                           011110   0  011  


Q ss_pred             ccccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCC---CCChhHHHHH---
Q psy6851         782 SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKF---PHHDNELAQA---  855 (948)
Q Consensus       782 ~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~F---PHH~ne~aq~---  855 (948)
                      ......+.++.||+|||..++++|.|.++| .|+|+||+.|+          +|+|.+||+++|   |||+|+++|+   
T Consensus       176 id~~~~~~~~~D~Vl~R~~~~~h~~~~d~w-~g~PtY~la~v----------vDDh~~GITHviRg~e~~~n~~~q~~l~  244 (553)
T 1qtq_A          176 IDMASPFIVMRDPVLYRIKFAEHHQTGNKW-CIYPMYDFTHC----------ISDALEGITHSLCTLEFQDNRRLYDWVL  244 (553)
T ss_dssp             SCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHTTCSEEEEEGGGTTTHHHHHHHH
T ss_pred             cccccCCCCCCCcEEEEecCCCCCccCCCC-ccccccccccE----------EEeccCCcceEeeccchhhhHHHHHHHH
Confidence            111345788999999999999999999999 79999999886          999999999999   9999999999   


Q ss_pred             hccCCC--C---------CCCccccchhhhH
Q psy6851         856 EGLPTH--D---------QEGKELSKGLAKK  875 (948)
Q Consensus       856 e~~~~~--~---------~~g~kmsKsl~n~  875 (948)
                      +|+.-.  +         ++|.|||||++|.
T Consensus       245 ~alg~~~~P~~~~f~hLn~~g~KLSKR~~~~  275 (553)
T 1qtq_A          245 DNITIPVHPRQYEFSRLNLEYTVMSKRKLNL  275 (553)
T ss_dssp             HTSCCSCCCEEEEECCCCBTTSCCCHHHHHH
T ss_pred             HHcCCCCCCCeEEEEeecCCCcccccccccc
Confidence            555211  1         7999999999984

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.79  E-value=7.9e-21  Score=219.97  Aligned_cols=170  Identities=12%  Similarity=-0.003  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851         630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA  708 (948)
Q Consensus       630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a  708 (948)
                      .|++.|++||+.||+.+ +..+++|+|++.+++++++|+++|+ |.     +|++..+  ..+                .
T Consensus       146 e~~~~I~edL~wLGl~w-d~~~~qSdr~~~y~~~~~~Li~~G~AY~-----c~cs~ee--i~~----------------~  201 (553)
T 3aii_A          146 EAYDMIPADLEWLGVEW-DETVIQSDRMETYYEYTEKLIERGGAYV-----CTCRPEE--FRE----------------L  201 (553)
T ss_dssp             THHHHHHHHHHHHTCCC-SEEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHH--HHH----------------H
T ss_pred             HHHHHHHHHHHHcCCCC-CCCcccccCHHHHHHHHHHHHHcCCcee-----CCCCHHH--HHH----------------H
Confidence            47889999999999997 7899999999999999999999999 95     4544331  000                0


Q ss_pred             hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCC-C--CCC--cc
Q psy6851         709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP-G--DLS--SQ  783 (948)
Q Consensus       709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~-~--~~~--~~  783 (948)
                      ....    ..+          .|..++.....   ..             .+           .+..|. |  .++  ..
T Consensus       202 r~~g----~~~----------~cR~~s~ee~l---~~-------------f~-----------~m~~G~~g~~~lR~k~d  240 (553)
T 3aii_A          202 KNRG----EAC----------HCRSLGFRENL---QR-------------WR-----------EMFEMKEGSAVVRVKTD  240 (553)
T ss_dssp             HHTT----CCC----------GGGGCCHHHHH---HH-------------HH-----------HGGGSCTTSCEEEECCC
T ss_pred             hhcC----CCC----------ccccCCHHHHH---HH-------------HH-----------HHhcCCcCceEEEEEcc
Confidence            0000    000          11111110000   00             00           011110 0  000  11


Q ss_pred             ccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCC---CChhHHHHH--hcc
Q psy6851         784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP---HHDNELAQA--EGL  858 (948)
Q Consensus       784 ~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FP---HH~ne~aq~--e~~  858 (948)
                      ....+.++.||+|||..++++|.|-..|. |+||||++|+          +|+|.+||+++|+   ||+|+.+|.  .++
T Consensus       241 ~~~~n~~~~Dfvl~R~~~~~hp~~Gd~~~-g~PtYhfa~~----------vDD~~~GIThviRG~D~~~nt~~Q~~l~~a  309 (553)
T 3aii_A          241 LNHPNPAIRDWVSMRIVEAEHPRTGTRYR-VYPMMNFSVA----------VDDHLLGVTHVLRGKDHLANREKQEYLYRH  309 (553)
T ss_dssp             TTCSSGGGTTCEEEEECCSCBTTTBTSCC-EEECHHHHHH----------HHHHHTTCCEEEC-----CHHHHHHHHHHH
T ss_pred             cccCCCCCCCcEEEEecCCCCCccCCCce-eeeeeeeeee----------eeeccCCCceEeccHhhhhCHHHHHHHHHH
Confidence            12345678999999998888888555554 8999999994          8999999999999   999999999  333


Q ss_pred             CCCC-----------CCCccccchhhhH
Q psy6851         859 PTHD-----------QEGKELSKGLAKK  875 (948)
Q Consensus       859 ~~~~-----------~~g~kmsKsl~n~  875 (948)
                      .|..           ++|.|||||++|.
T Consensus       310 lG~~~P~y~H~~~L~~~g~KLSKR~~~~  337 (553)
T 3aii_A          310 LGWEPPEFIHYGRLKMDDVALSTSGARE  337 (553)
T ss_dssp             HTCCCCEEECCCCBC-------CHHHHH
T ss_pred             cCCCCCeEEEeeEEecCCceechhhhhh
Confidence            3332           7899999999984

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=99.78  E-value=1.5e-20  Score=225.70  Aligned_cols=175  Identities=16%  Similarity=0.064  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851         630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA  708 (948)
Q Consensus       630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a  708 (948)
                      .|++.|++||+.||+.+++..+++|+|++.+++++++||++|+ |.     +|++..+=. .....+.     ..|    
T Consensus       116 e~~~~IledL~wLGl~wde~~~~qSer~d~y~e~a~~LI~~G~AY~-----c~ct~eel~-~~r~~~~-----~~G----  180 (851)
T 2hz7_A          116 EYVDSIADDLKWLGLDWGEHFYYASDYFDRYYAYAEQLIRQGDAYV-----ESVSPEELS-RLRGNAT-----TPG----  180 (851)
T ss_dssp             HHHHHHHHHHHHHTCCCTTCEEEGGGGHHHHHHHHHHHHHTTSEEE-----ECSCHHHHH-HHHCBTT-----BCC----
T ss_pred             HHHHHHHHHHHHcCCCCCCCcccHhhhHHHHHHHHHHHHHCCCcEe-----ecCCHHHHH-HHhcchh-----ccC----
Confidence            5889999999999999999999999999999999999999999 95     454432100 0000000     000    


Q ss_pred             hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCC---C--CCC--
Q psy6851         709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKP---G--DLS--  781 (948)
Q Consensus       709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~---~--~~~--  781 (948)
                              ..+          .|..+++...-..-.                           .+..|+   |  .++  
T Consensus       181 --------~~s----------~~R~ls~ee~l~~fe---------------------------~m~~G~~~~g~~vlR~K  215 (851)
T 2hz7_A          181 --------TPS----------PYRDRSVEENLDLLR---------------------------RMKAGEFADGEHVLRAK  215 (851)
T ss_dssp             --------CCC----------TTTTCCHHHHHHHHH---------------------------HHHTTCSCTTSCEEEEC
T ss_pred             --------CCc----------ccccCCHHHHhhHHH---------------------------HHhcCCcccCCeeEEEe
Confidence                    000          011111100000000                           011111   0  001  


Q ss_pred             ccccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCC---CChhHHHHH---
Q psy6851         782 SQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP---HHDNELAQA---  855 (948)
Q Consensus       782 ~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FP---HH~ne~aq~---  855 (948)
                      ......+.++.||+|||..++++|.|.+|| .|+|+||++|+          +|.|.+||+++++   ||+|+.+|.   
T Consensus       216 id~~~~~~~~~DfVl~R~~~~~h~~~gd~w-~g~PtYhfA~v----------VDD~~~GITHViRG~D~~~n~~~q~~l~  284 (851)
T 2hz7_A          216 IDLTAPNMKLRDPVLYRIVNKPHFRTSDEW-HIYPAYDFEHP----------LQDAIEGVTHSMCSLEFVDNRAIYDWLM  284 (851)
T ss_dssp             CCTTCSSGGGSSCEEEEECCCCBTTTBTSC-SEEECHHHHHH----------HHHHHHTCSEEEEEGGGTTTHHHHHHHH
T ss_pred             ccccccCCCCCCcEEEEecCCCCCccCCCC-ccccccceeeE----------eeeccCCcceeecchhhhhChHHHHHHH
Confidence            111346788999999999999999999999 89999999998          7999999999999   999999998   


Q ss_pred             hccCCC--C---------CCCccccchhhhH
Q psy6851         856 EGLPTH--D---------QEGKELSKGLAKK  875 (948)
Q Consensus       856 e~~~~~--~---------~~g~kmsKsl~n~  875 (948)
                      +++.-.  +         ++|.|||||++|.
T Consensus       285 ~alG~~~~P~~~~fahLn~~g~KLSKR~g~~  315 (851)
T 2hz7_A          285 EKLNFDPRPHQYEFGRRGLEYTITSKRKLRE  315 (851)
T ss_dssp             HHTTCSSCCEEEEECCEEETTCCCCHHHHHH
T ss_pred             HHcCCCCCCCceEEEEecCCCcccccccccc
Confidence            555211  2         7999999999985

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=99.75  E-value=5.4e-19  Score=211.71  Aligned_cols=59  Identities=3%  Similarity=-0.080  Sum_probs=54.6

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++.+|.+.|.++|++|||. +|.+.|+++  |+..+..++++|.++|+ |+....||||++++
T Consensus        70 ~~~~~~~~~~~~~~~lgis-~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~y~~~~~  131 (722)
T 1rqg_A           70 IVDEFHEQIKITFQRAKIS-FDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDK  131 (722)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-CSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTT
T ss_pred             HHHHHHHHHHHHHHHhCCC-CCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeeeecCCCC
Confidence            5678999999999999995 799999997  99999999999999999 99999999999884

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=99.75  E-value=6.6e-18  Score=202.36  Aligned_cols=230  Identities=13%  Similarity=0.045  Sum_probs=154.5

Q ss_pred             CCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCC-------
Q psy6851          97 KIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQ-------  165 (948)
Q Consensus        97 g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~-------  165 (948)
                      |+++++++.++.+.|.+++.  || .++.+.|.|+  |+..+. +++++|.++|++|...+.|||++....-.       
T Consensus        64 G~~p~e~~~~~~~~~~~~~~~lgi-s~D~~~rT~d~~~~~~v~-~~f~~L~~kG~iY~~~~~v~y~~~~~tfl~d~~v~g  141 (722)
T 1rqg_A           64 GRSPREIVDEFHEQIKITFQRAKI-SFDFFGRTELPIHYKLSQ-EFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFVIG  141 (722)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHTC-CCSEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCC-CCCCCeeCCCHHHHHHHH-HHHHHHHHCCCEEecceeeeecCCCCcCcchhhccc
Confidence            55555555555556665555  99 6898999886  999999 79999999999999999999998764100       


Q ss_pred             -----CC-CCcccc--------CCcc----------------------------------cc---ccccc---------c
Q psy6851         166 -----PN-HYYAKL--------VPEA----------------------------------YG---DTKTL---------Q  185 (948)
Q Consensus       166 -----g~-~~YgKL--------~P~D----------------------------------Fa---LWK~a---------k  185 (948)
                           +. +.||.+        +|.+                                  +.   .|...         +
T Consensus       142 tcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~wp~~~~~~~~~wl~  221 (722)
T 1rqg_A          142 TCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIE  221 (722)
T ss_dssp             BCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHT
T ss_pred             ccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                 00 123322        1100                                  00   24333         3


Q ss_pred             CCCCcC----CCCCCCcccCCCCCCCCCCcce-----------eEe--------------------ec--cC---ccccc
Q psy6851         186 EGEVRG----YPPWPARIEGLADETPNRLKYH-----------IFF--------------------YG--TR---ETGIC  225 (948)
Q Consensus       186 ~gEp~w----espWg~~~~~m~~~~~GRPGWH-----------IEc--------------------LG--~~---dih~G  225 (948)
                      +|.+.|    ..+||.++|.+      +.|||           |+|                    .+  +.   ++|++
T Consensus       222 ~gl~dw~ISR~~~WG~piP~~------~~g~~~~~iyvW~da~i~y~~~~~~~~~~~g~~~~~~~~w~~pd~~~~~~h~~  295 (722)
T 1rqg_A          222 EGLEERAITRDLNWGIPVPLD------EEDMKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFI  295 (722)
T ss_dssp             TCCCCEECEECCSSSCBCSCC------CSSSTTCEECHHHHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEE
T ss_pred             CCCcccceeccccCccccCcc------ccCCCCCEEEEEeccccchhhhHHHHHhhcCCchHHHhccCCCCCCCeeEEEc
Confidence            555566    77888644321      01565           433                    11  21   27899


Q ss_pred             cccccCCcccc-------------------------ccccccEEEcccchhhcchhHHHHHHH-----------HHHHHH
Q psy6851         226 RQDELFPYTEF-------------------------KDKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKD  269 (948)
Q Consensus       226 G~DL~FPHHEn-------------------------e~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~  269 (948)
                      |.|++|+|.-.                         -.++|+|+++|+|||||+||+|+..++           |+ ++.
T Consensus       296 GkDii~fH~~~wpA~l~~~~~~l~~d~~rg~~~Pk~v~~hG~v~~~G~KMSKS~GNvV~p~d~i~~ygaDalR~~l-l~~  374 (722)
T 1rqg_A          296 GKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTLEGKKFSTSRNWAIWVHEFLDVFPADYLRYYL-TTI  374 (722)
T ss_dssp             EGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEETTEECBTTTTBSCBHHHHTTTSCHHHHHHHH-HHT
T ss_pred             cccccccchhhhHHHHhccCCCcccccccCCCCCCEEEEeeeEEeCCeeeeeeCCCcCCHHHHHHhcCchHHHHHH-Hhc
Confidence            99999876431                         135789999999999999999987764           44 444


Q ss_pred             -HHhh-cCCChhhhHH---------H----HhhH------------------HHhHHHhHHHHHHHHHHHHHHhhcCChH
Q psy6851         270 -HIRN-LKFPATTVSS---------F----EKWT------------------QADLELSTRFIQTKNNVHAALCDNMDTR  316 (948)
Q Consensus       270 -hyR~-l~~s~~~l~~---------~----~r~~------------------~ad~eL~~~l~el~e~F~aAL~DDFNTP  316 (948)
                       +|++ ++|+++.+..         +    .|..                  ..+..+...+.++...+.++| ++|+++
T Consensus       375 ~~~~~D~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~k~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~f~  453 (722)
T 1rqg_A          375 MPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDGVVPERGELDELDREALEEIEKAFKEVGELI-MNYRFK  453 (722)
T ss_dssp             CCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTTBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HhcCHH
Confidence             7877 8888764311         1    1110                  113334556677889999999 899999


Q ss_pred             HHHHHHHHHHHHHHhhhcCC
Q psy6851         317 SALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       317 ~ALaaLfeLVraiN~yLd~~  336 (948)
                      .|+.+|++|++.+|.|++..
T Consensus       454 ~A~~~i~~~~~~~n~Yi~~~  473 (722)
T 1rqg_A          454 DALKRVMSLASFGNRYFDHK  473 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999753

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*

Probab=99.74  E-value=2.5e-19  Score=207.01  Aligned_cols=59  Identities=10%  Similarity=0.009  Sum_probs=53.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.++|++|||.. |.+.|++  +|+..++.++++|.++|+ |+....|||+++++
T Consensus        76 ~~~~~~~~~~~~~~~lgi~~-D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~~~~~~  137 (542)
T 3u1f_A           76 FTTAVAGEFKKCFEQMDYSI-DYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWYSISDE  137 (542)
T ss_dssp             HHHHHHHHHHHHHHHHTCCC-SEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHhCCcc-CcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEeeccCc
Confidence            56789999999999999974 8888888  499999999999999999 99999999999873

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1

Probab=99.73  E-value=1.7e-19  Score=208.68  Aligned_cols=157  Identities=13%  Similarity=0.142  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHhc--CCCCCCccccccc-cHH-HHHHHHHHHHHHcC----------------CeeeeCCcEEEeec
Q psy6851         101 SEMFKMETDKYSQFDE--TVLPPTVLTRVSE-YIP-EIVASYIEKIIANG----------------LAYESNGSVYFNVN  160 (948)
Q Consensus       101 ~el~~~~~~~f~~dm~--nV~~P~~~pRvTe-~Ip-eII~~~I~~LI~~G----------------~AYes~GsVYFDv~  160 (948)
                      .++++.+.+.|.++|.  || .|+++ |.|+ |++ .+. ++|++|+++|                +||..  + ||++.
T Consensus       101 ~~~~~~~~~~~~~~l~~Lgi-~~D~~-~~se~~~~g~~~-~~i~~L~~~G~~iy~~~~~~~g~~~~~~y~~--~-~~~~~  174 (523)
T 1irx_A          101 ESYAEHFMRKFEEEVEKLGI-EVDLL-YASELYKRGEYS-EEIRLAFEKRDKIMEILNKYREIAKQPPLPE--N-WWPAM  174 (523)
T ss_dssp             SSHHHHHHHHHHHHHHTTTC-CCEEE-EHHHHHHTTTTH-HHHHHHHHTHHHHHHHHHHHHHHTTCCCCCT--T-CCSEE
T ss_pred             HHHHHHHHHHHHHHHHHcCC-CceEE-echhhccchHHH-HHHHHHHHchHHHHHHHHhhccccccccccC--C-ceecc
Confidence            5566667778888887  99 78999 9999 999 899 7999999999                88865  3 99988


Q ss_pred             cCCCCCCCCcccc---------CCccccccccccCCCCcCCCCC-CCcccCCCCCCCCCCcceeEe------eccCcccc
Q psy6851         161 AFDSQPNHYYAKL---------VPEAYGDTKTLQEGEVRGYPPW-PARIEGLADETPNRLKYHIFF------YGTRETGI  224 (948)
Q Consensus       161 ~f~~~g~~~YgKL---------~P~DFaLWK~ak~gEp~wespW-g~~~~~m~~~~~GRPGWHIEc------LG~~dih~  224 (948)
                      .|..    .|+++         .|.+|.+    ++|++.|.++| |          .|||||||||      ||. ++++
T Consensus       175 ~~~~----~~~~~~~~~~~~~~~~~~f~~----~~g~~~~~d~~~G----------~g~~~w~~d~~~~~~~l~~-~vd~  235 (523)
T 1irx_A          175 VYCP----EHRREAEIIEWDGGWKVKYKC----PEGHEGWVDIRSG----------NVKLRWRVDWPMRWSHFGV-DFEP  235 (523)
T ss_dssp             EECT----TTCCEECEEEECSSSCEEECC----SSSCCCEECTTSS----------CEEECHHHHHHHHHHHSCC-CBCC
T ss_pred             ccch----hhCCcccccccCCCCceeeee----cCCCccccCCcCC----------CCCCCCCcchHhhHHHcCC-CCcC
Confidence            8743    23432         3455655    57888999999 5          4999999998      444 3678


Q ss_pred             ccccccCCc----cccc-------------cccccEEEc--ccchhhcchhHHHHHHHH----------HHHHHHHhh-c
Q psy6851         225 CRQDELFPY----TEFK-------------DKYGKVRVH--LSQKQQSLKLVVIMKEFF----------LNVKDHIRN-L  274 (948)
Q Consensus       225 GG~DL~FPH----HEne-------------~h~G~l~i~--geKMSKSLGN~vti~ef~----------l~ls~hyR~-l  274 (948)
                      +|.|++|||    |.++             +|+|+|+++  |+|||||+||++++.+++          .+++.+|++ +
T Consensus       236 ~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~~g~g~KmSKs~Gn~i~~~~~~~~~~pdalR~~l~~~~~~~~~  315 (523)
T 1irx_A          236 AGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYARHRPNKEI  315 (523)
T ss_dssp             EEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHHHHTTSCHHHHHHHHHSSCTTSCE
T ss_pred             CCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEeCCCCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHhcCCCCCc
Confidence            999999999    6653             678899998  899999999999888752          225567777 7


Q ss_pred             CCChh-hhH
Q psy6851         275 KFPAT-TVS  282 (948)
Q Consensus       275 ~~s~~-~l~  282 (948)
                      +|+.+ .+.
T Consensus       316 ~fs~~~~l~  324 (523)
T 1irx_A          316 KIDLGLGIL  324 (523)
T ss_dssp             EECCSTTHH
T ss_pred             eeCcchhHH
Confidence            77766 443

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A

Probab=99.68  E-value=4.2e-18  Score=201.21  Aligned_cols=63  Identities=11%  Similarity=-0.116  Sum_probs=57.6

Q ss_pred             ccccccHHHHHHHHHHHHhhcCCCCCCeeeccccc--HHHHHHHHhCcccCCC-c-----ccCCcccccCCC
Q psy6851         622 SIFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEY--IPEIVASAQTPKPAAA-K-----KAESSSDDDSSS  685 (948)
Q Consensus       622 ~~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~--i~~ii~~i~~l~~~g~-Y-----~~~gsvyfdvss  685 (948)
                      .+...+...+.+.|.+++++|||.. |.++|.|+|  ++.|.++|++|.++|+ |     +.+|.+|+++++
T Consensus       240 ~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~~~~v~~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~  310 (629)
T 2zue_A          240 LYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVRRKLFEIALELLSKNENFYIPSDGKYRGAFVMDLRK  310 (629)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHHTTHHHHHHHHHHTSTTEECCSSSTTTTCEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCccccchhHHHHHHHHHHCCCccccccCCcCCcEEEECcc
Confidence            4556788999999999999999976 999999998  8999999999999999 9     789999998876

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A

Probab=99.65  E-value=1.8e-16  Score=187.38  Aligned_cols=247  Identities=11%  Similarity=-0.010  Sum_probs=175.0

Q ss_pred             hcC-CChHHHHHHHHHHHHHHhc--CCCCCCcccccccc--HHHHHHHHHHHHHHcCCee-----eeCCcEEEeeccCCC
Q psy6851          95 QKK-IPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEY--IPEIVASYIEKIIANGLAY-----ESNGSVYFNVNAFDS  164 (948)
Q Consensus        95 e~g-~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~--IpeII~~~I~~LI~~G~AY-----es~GsVYFDv~~f~~  164 (948)
                      +.| ..|+++...+.+.|.+++.  ||.. ++++|.|+|  ++.|. ++|++|.++|++|     +.+|.+||++..|.+
T Consensus       236 e~gd~~~~~~~~~~~~~f~~~~~~L~I~~-D~~~~es~~~~~~~v~-~vi~~L~~kG~~y~~~~ge~~Ga~~v~~~~~g~  313 (629)
T 2zue_A          236 ESGELYGRKLAEEVVRAQMVTTYKLGVKY-DLLVWESDIVRRKLFE-IALELLSKNENFYIPSDGKYRGAFVMDLRKLFP  313 (629)
T ss_dssp             HHSSSCCHHHHHHHHHHHHHHHHHHTCCC-SEEEEHHHHHHTTHHH-HHHHHHHTSTTEECCSSSTTTTCEEEECTTTCS
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHcCCcc-ccccCcCccccchhHH-HHHHHHHHCCCccccccCCcCCcEEEECcccCC
Confidence            345 7888888888899988887  9965 999999999  88999 7999999999999     889999999999853


Q ss_pred             CCCCCcccc-----C------Cccc--cccc--------cccCC-CCcC-CCCCCCcccCCCCCCCCCCcceeEee---c
Q psy6851         165 QPNHYYAKL-----V------PEAY--GDTK--------TLQEG-EVRG-YPPWPARIEGLADETPNRLKYHIFFY---G  218 (948)
Q Consensus       165 ~g~~~YgKL-----~------P~DF--aLWK--------~ak~g-Ep~w-espWg~~~~~m~~~~~GRPGWHIEcL---G  218 (948)
                      .. + .|.+     +      +.|+  .+||        ..++. ++.| .+|||.          ||||    .+   +
T Consensus       314 ~~-~-~~~~v~~ksdG~~~Y~~~Diay~~~K~~ll~~~fr~~~~~~~~~~~~~wG~----------~~Pg----~~~~~d  377 (629)
T 2zue_A          314 DM-K-NPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGK----------SMPN----KFGNAN  377 (629)
T ss_dssp             SS-S-CCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEE----------ECTT----SSCCCS
T ss_pred             cc-c-cCceEEEecCCccccchhhHHHHHHHhhcccccccCCcccccccccCCCCC----------CCCC----ccCCCC
Confidence            11 0 0111     1      3455  6887        55443 3334 478885          7776    22   1


Q ss_pred             cC-ccccccccccCCcccc-------------cccc--ccEEEcccchhhcch--hHHHHHHHH----------------
Q psy6851         219 TR-ETGICRQDELFPYTEF-------------KDKY--GKVRVHLSQKQQSLK--LVVIMKEFF----------------  264 (948)
Q Consensus       219 ~~-dih~GG~DL~FPHHEn-------------e~h~--G~l~i~geKMSKSLG--N~vti~ef~----------------  264 (948)
                      .. +++++|+|+-|++..+             ..|.  |+|++.|.|||||+|  |+|++.+++                
T Consensus       378 ~~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~~~~~KMSkr~G~~n~v~l~dLl~e~~~~a~~~~~~~~~  457 (629)
T 2zue_A          378 IVINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP  457 (629)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEEBTTBCCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cEEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEEcCCCcccCCCCCCCeeeHHHHHHHHHHHHHHHHHhcCc
Confidence            12 5788888888776542             2354  899999999999999  998765543                


Q ss_pred             ---------------------HHHHHHHhh-cCCChhhhH------------H-------HHhhH---------------
Q psy6851         265 ---------------------LNVKDHIRN-LKFPATTVS------------S-------FEKWT---------------  288 (948)
Q Consensus       265 ---------------------l~ls~hyR~-l~~s~~~l~------------~-------~~r~~---------------  288 (948)
                                           ..|+.++++ ++|+.+.+.            +       +++..               
T Consensus       458 ~~~~~~~~~~a~~vg~~AvRy~~L~~~~~~~~~Fd~d~~~~~~~~t~~ylqYa~aRi~Silrka~~~~~~~~~~~~~~~~  537 (629)
T 2zue_A          458 ALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKNA  537 (629)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCCSSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHC
T ss_pred             ccchhhHHHHHHhcChhHhhHHHHhcCCCCCCeecHHHHHHHhcCchHHHHHHHHHHHHHHHhhhccccccccccccccc
Confidence                                 225566766 778765321            1       11211               


Q ss_pred             ------HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC------CC-----HHHHHHHHHHHHH
Q psy6851         289 ------QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT------PN-----QLLLRDIGAYVTK  351 (948)
Q Consensus       289 ------~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~------~~-----~~lL~~i~~~V~~  351 (948)
                            ..+.+|...+..+.+.+..|+ ++++.+.++..|++|++..|++.+..      ..     ..++..+...+..
T Consensus       538 ~~~l~~~~e~~L~~~l~~fp~~v~~a~-~~~~p~~l~~yl~~La~~fn~fy~~~~vl~~~~~~~~~RL~L~~a~~~vL~~  616 (629)
T 2zue_A          538 DFTKLSERERELVIMLSKFPRIVEQAG-KDVKPHLIAWFANELASLFNKFYMDHPVLKAEEGVREARLLLVMAVEQVLKN  616 (629)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHH-HTTCTHHHHHHHHHHHHHHHHHHHHCCSTTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHH
Confidence                  012234455678889999999 79999999999999999999987632      11     1234556667777


Q ss_pred             HHhHccccc
Q psy6851         352 ILTVFGCIG  360 (948)
Q Consensus       352 mL~VLGL~~  360 (948)
                      -|.+|||..
T Consensus       617 gL~lLGI~a  625 (629)
T 2zue_A          617 ALYLMGIEA  625 (629)
T ss_dssp             HHHHTTCCC
T ss_pred             HHHHcCCCc
Confidence            899999864

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=99.61  E-value=2.6e-16  Score=170.90  Aligned_cols=161  Identities=15%  Similarity=0.090  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-ccc---------CCcccccCCCCCccccccCCCCCcc
Q psy6851         631 WEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKA---------ESSSDDDSSSEDEKPAVKAPAKPVA  700 (948)
Q Consensus       631 ~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~---------~gsvyfdvssede~pa~k~~~k~~~  700 (948)
                      |++.+++||+.|||.++..+++.|++++.+.+++++|+++|+ |.-         .|.+|+.+...              
T Consensus        56 ~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~--------------  121 (298)
T 1nzj_A           56 AAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRV--------------  121 (298)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCEEGGGCHHHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTT--------------
T ss_pred             HHHHHHHHHHHcCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCcccc--------------
Confidence            678889999999999988899999999999999999999999 963         35577776551              


Q ss_pred             cccchhhhhhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCC
Q psy6851         701 HAAEPAAAKKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDL  780 (948)
Q Consensus       701 ~~~~~~~akk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~  780 (948)
                                       -+          .++++.+.--+.+.   ..-..+                   .+..  |.+
T Consensus       122 -----------------~~----------~~g~~~~~R~r~~~---~~~~f~-------------------D~~~--G~~  150 (298)
T 1nzj_A          122 -----------------LH----------HGPDNAAVRIRQQH---PVTQFT-------------------DQLR--GII  150 (298)
T ss_dssp             -----------------TC----------CCSTTCEEEECCSS---CCCEEE-------------------ETTT--EEE
T ss_pred             -----------------CC----------cCCCCCcEEEecCC---ccccee-------------------hhhC--ccc
Confidence                             00          01111110000000   000000                   1111  111


Q ss_pred             CccccccCCCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHh--cc
Q psy6851         781 SSQEASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAE--GL  858 (948)
Q Consensus       781 ~~~~~~~K~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e--~~  858 (948)
                      .   ...+.+..||+|||+             .|+|+||++|++ .....|.+.+||  |.||+    +|+.+|.+  .+
T Consensus       151 ~---~~~~~~~~D~VL~R~-------------dG~PtY~la~vv-dD~~~giThvIr--G~D~l----~~t~~q~~l~~a  207 (298)
T 1nzj_A          151 H---ADEKLAREDFIIHRR-------------DGLFAYNLAVVV-DDHFQGVTEIVR--GADLI----EPTVRQISLYQL  207 (298)
T ss_dssp             E---CCHHHHHSCCEEECT-------------TSCBCHHHHHHH-HHHHTTCCEEEE--EGGGH----HHHHHHHHHHHH
T ss_pred             c---cCcccCCCCEEEECC-------------CCCEeeeeeeee-EHHhcCCCEEEe--Ccccc----ccHHHHHHHHHH
Confidence            1   123456789999995             689999999999 888999999999  99985    99999998  44


Q ss_pred             CCCC------------CCCccccchhhhH-hhhH
Q psy6851         859 PTHD------------QEGKELSKGLAKK-LKKL  879 (948)
Q Consensus       859 ~~~~------------~~g~kmsKsl~n~-l~~~  879 (948)
                      .|.+            .+|+||||+.||+ |..+
T Consensus       208 lG~~~p~~~H~pll~~~~g~KLSKR~g~~~v~~~  241 (298)
T 1nzj_A          208 FGWKVPDYIHLPLALNPQGAKLSKQNHAPALPKG  241 (298)
T ss_dssp             HTCCCCEEEEECBCCC-------------CCCSS
T ss_pred             cCCCCCeEEEeeeeECCCCCcccccCCccChhcC
Confidence            4433            6899999999999 6666

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=99.61  E-value=1.4e-16  Score=183.47  Aligned_cols=200  Identities=14%  Similarity=0.070  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCCCccccccCCCCCcccccchhhh
Q psy6851         630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAA  708 (948)
Q Consensus       630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~a  708 (948)
                      .|++.+++||+.||+.++...++.|++++.+.+++++|+++|+ |.     +|++..|=+.-..            ...+
T Consensus        51 ~~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~~~~~~Li~~G~AY~-----c~ct~~el~~~r~------------~~~~  113 (492)
T 2cfo_A           51 EYTENILEGLQWLGLTWDEGPYFQSDRLDLYRQAIQTLLDKGLAYY-----CYCTPEELEALRA------------EQKA  113 (492)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE-----ECCCHHHHHHHHH------------HHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCCccccCCHHHHHHHHHHHHHCCCceE-----ecCCHHHHHHHHH------------HHHh
Confidence            5889999999999999888899999999999999999999999 95     5665542000000            0000


Q ss_pred             hhcCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccc--cCCCC-chhhcc-CCCCCCccc
Q psy6851         709 KKAESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAV--KAPAK-PVAQAA-KPGDLSSQE  784 (948)
Q Consensus       709 kk~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~--k~~~~-~~~~~~-~~~~~~~~~  784 (948)
                      .+.  ....++          .|..++.....   .+...   .       ..+.-  +.+.. .....+ -.|.+    
T Consensus       114 ~g~--~~~y~~----------~cr~ls~~e~~---~~~~~---g-------~~~~iR~k~~~~~~~~~~D~v~G~~----  164 (492)
T 2cfo_A          114 KGQ--APRYDN----------RHRHLTPEEQA---AFEAA---G-------RTPVIRFKIEDDRQIEWQDLVRGRV----  164 (492)
T ss_dssp             HTC--CSSCCC----------TTTTCCHHHHH---HHHHT---T-------CCCEEEECCCTTCEEEEEETTTEEE----
T ss_pred             cCC--CCCCCc----------ccccCCHHHHH---HHHhC---C-------CCceEEEEcCCCCceEEEecceeee----
Confidence            000  000110          12222211000   00000   0       00000  00000 000000 01111    


Q ss_pred             cccCCCC-CCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCC---CChhHHHHHh--cc
Q psy6851         785 ASEKRSP-NDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFP---HHDNELAQAE--GL  858 (948)
Q Consensus       785 ~~~K~~~-~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FP---HH~ne~aq~e--~~  858 (948)
                      ...+.+. .||+|||+.+       || |.|+|+||++|+          +|.|.+||+++++   ||+|...|..  .+
T Consensus       165 ~~~~~~~~~D~Vl~R~d~-------~p-~~G~PtY~la~v----------vDD~~~gIthviRG~D~~~~t~~q~~l~~a  226 (492)
T 2cfo_A          165 SWQGADLGGDMVIARAAP-------RG-EIGYPLYNLVVV----------VDDIAMGITDVIRGEDHIGNTPKQILLYEA  226 (492)
T ss_dssp             EEEGGGGCSSEEEECSCC-------TT-SCCCBCHHHHHH----------HHHHHTTCSEEEEEGGGTTHHHHHHHHHHH
T ss_pred             eecccccCCCeEEEEecC-------CC-CCCceeehhhhh----------hhhhcCCCCeEEEchhhhhCHHHHHHHHHH
Confidence            2346677 8999999864       56 799999999999          9999999999999   9999999996  33


Q ss_pred             CCCC------------CCCccccchhhhH-hhhHHHH--HHHHHHHHHHH
Q psy6851         859 PTHD------------QEGKELSKGLAKK-LKKLQLT--QEKKYNEYIAS  893 (948)
Q Consensus       859 ~~~~------------~~g~kmsKsl~n~-l~~~~~~--~~~~~~~~~~~  893 (948)
                      .|.+            .+|+||||+.||+ |..|+..  .-..+.+|+..
T Consensus       227 lg~~~P~~~H~plil~~~g~KLSKr~g~~~l~~~r~~G~~peal~~~l~~  276 (492)
T 2cfo_A          227 LGATPPNFAHTPLILNSTGQKLSKRDGVTSISDFRAMGYLAPALANYMTL  276 (492)
T ss_dssp             TTCCCCEEEEECCEECSSSSBCCTTSSCCBHHHHHHTTCCHHHHHHHHHH
T ss_pred             cCCCCceEEEeeeEECCCCCEecccCCcccHHHHHHCCCCHHHHHHHHHH
Confidence            3332            6899999999999 5665421  12346666664

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=99.61  E-value=1.3e-15  Score=176.32  Aligned_cols=237  Identities=16%  Similarity=0.129  Sum_probs=140.5

Q ss_pred             HhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccc--cHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCC
Q psy6851          94 AQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSE--YIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHY  169 (948)
Q Consensus        94 ~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe--~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~  169 (948)
                      .+.|+++.++++++.+.|.++++  ||.. +.+.|.|+  |++.|+ +++++|+++|++|+.++.|||++....-++...
T Consensus        83 ~~~g~~~~~~~~~~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~-~~~~~L~~~G~iY~~~~~~~~~~~~~~~l~~~~  160 (536)
T 4dlp_A           83 RKEGITPRDLADRNTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQ-AIWQAMVANGDIYKGGYAGWYSVRDEAYYGEEE  160 (536)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETTTTEEECGGG
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHH-HHHHHHHHCCCEEEeceeeeecCCcCcccCHHH
Confidence            34467777777777888887777  9975 57788887  999999 799999999999999999999986543111100


Q ss_pred             -----cccc---C--C-------------ccccc----ccc------------------ccCCCCcC-----CCCCCCcc
Q psy6851         170 -----YAKL---V--P-------------EAYGD----TKT------------------LQEGEVRG-----YPPWPARI  199 (948)
Q Consensus       170 -----YgKL---~--P-------------~DFaL----WK~------------------ak~gEp~w-----espWg~~~  199 (948)
                           .|+.   .  |             .+|..    |-.                  .+.|-..|     ...||-|+
T Consensus       161 ~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~~ISR~~~~WGipi  240 (536)
T 4dlp_A          161 TEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDLSISRTTFDWGIPV  240 (536)
T ss_dssp             CEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCEECEEC--CCSCBC
T ss_pred             hhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCccCCccCCCcCCeeC
Confidence                 0110   0  0             00100    000                  00111122     24589888


Q ss_pred             cCCCCC--------------CCCCCcceeEeec---cCccccccccccCCccccc---------------cccccEEEcc
Q psy6851         200 EGLADE--------------TPNRLKYHIFFYG---TRETGICRQDELFPYTEFK---------------DKYGKVRVHL  247 (948)
Q Consensus       200 ~~m~~~--------------~~GRPGWHIEcLG---~~dih~GG~DL~FPHHEne---------------~h~G~l~i~g  247 (948)
                      |+.+..              .-|.|. +-+-+.   +.|+|..|.|.++.|.-+.               ..+|+|.++|
T Consensus       241 P~~~~~v~yvWfda~~~y~s~~~~~~-~~~~~~~~~p~dv~~~G~D~~~fh~~~~~a~l~a~g~~~~~~v~~hg~v~~~G  319 (536)
T 4dlp_A          241 PGDEKHVMYVWVDALTNYITALGYPD-TTDERWAYWPANAHIIGKDISRFHAVYWPAFLMSAQLPLPKRVFAHGFLFNRG  319 (536)
T ss_dssp             TTCTTSEECHHHHHHHHHHHTTTTTC-TTSGGGGGCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCEEC--
T ss_pred             CCCCCCceEEeeCCcHHHHHhcCCCC-CchHHHhhCCcceEEeechHHHHHHHHHHHHHHHCCCCCCcEEEeeeeEeeCC
Confidence            643210              112211 000011   2368899999999887652               2458999999


Q ss_pred             cchhhcchhHHHHHHH-----------HHHHH-HHHhh-cCCChhhhHH-------------HHhhH-------------
Q psy6851         248 SQKQQSLKLVVIMKEF-----------FLNVK-DHIRN-LKFPATTVSS-------------FEKWT-------------  288 (948)
Q Consensus       248 eKMSKSLGN~vti~ef-----------~l~ls-~hyR~-l~~s~~~l~~-------------~~r~~-------------  288 (948)
                      +|||||+||+|+..++           |+ ++ ..+.+ ++|+.+.+..             +.|..             
T Consensus       320 ~KMSKS~GNvi~p~d~i~~~GaDalR~~l-l~~~~~~~d~~fs~~~~~~~~n~~l~~~l~N~~~R~~~~~~~~~~~~~p~  398 (536)
T 4dlp_A          320 EKMSKSVGNVIDPFELVERYGLDQLRYFL-MREVPFGQDGSYSHEAIVNRTNADLANDLGNLAQRSLSMIAKNCEGKVPQ  398 (536)
T ss_dssp             ----------CCHHHHHHHHCHHHHHHHH-HHHSCTTSCEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHSTTBCCC
T ss_pred             ceecccCCCCCCHHHHHHHcCcHHHHHHH-HhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence            9999999999987664           33 33 33444 7787654321             11111             


Q ss_pred             -----HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         289 -----QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       289 -----~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                           ..+..+...+.++.+.+.++| +++++..|+..|+++++.+|.|++.
T Consensus       399 ~~~~~~~d~~ll~~l~~~~~~v~~a~-~~~~~~~a~~~l~~l~~~~n~Y~~~  449 (536)
T 4dlp_A          399 PGAFSEADKAILDQADAALETARKAM-DDQALHLALGAIFAVVAEANRYFAG  449 (536)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHHh
Confidence                 123445567778899999999 7899999999999999999999874

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}

Probab=99.58  E-value=7.8e-16  Score=178.29  Aligned_cols=59  Identities=19%  Similarity=0.018  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccc--cHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSE--YIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse--~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.+||++|||.. +.+.|+++  |++.|.+++++|.++|+ |+.++.+||+++++
T Consensus        92 ~~~~~~~~~~~~l~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~~~~~~~  153 (536)
T 4dlp_A           92 LADRNTSAFRRMAEVLNSSN-DDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGWYSVRDE  153 (536)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHcCCCC-CcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeeeecCCcC
Confidence            46789999999999999986 57889997  99999999999999999 99999999999884

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.57  E-value=3.7e-16  Score=181.21  Aligned_cols=133  Identities=12%  Similarity=0.007  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc----CCCCC--C--------
Q psy6851         104 FKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNA----FDSQP--N--------  167 (948)
Q Consensus       104 ~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~----f~~~g--~--------  167 (948)
                      ...+.+++.++++  |+.+ +..+|+|+|++.++ +++++||++|+||+     +|.+..    ++.++  +        
T Consensus       144 ~~e~~~~I~edL~wLGl~w-d~~~~qSdr~~~y~-~~~~~Li~~G~AY~-----c~cs~eei~~~r~~g~~~~cR~~s~e  216 (553)
T 3aii_A          144 DPEAYDMIPADLEWLGVEW-DETVIQSDRMETYY-EYTEKLIERGGAYV-----CTCRPEEFRELKNRGEACHCRSLGFR  216 (553)
T ss_dssp             CTTHHHHHHHHHHHHTCCC-SEEEEGGGGHHHHH-HHHHHHHHTTSEEE-----ECSCHHHHHHHHHTTCCCGGGGCCHH
T ss_pred             cHHHHHHHHHHHHHcCCCC-CCCcccccCHHHHH-HHHHHHHHcCCcee-----CCCCHHHHHHHhhcCCCCccccCCHH
Confidence            3356777887777  9977 68999999999999 79999999999995     443332    21111  0        


Q ss_pred             ------------C------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccCccc
Q psy6851         168 ------------H------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETG  223 (948)
Q Consensus       168 ------------~------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~dih  223 (948)
                                  .            ...+.++.||++|+...+++|.    ||..|       .|+|+||++|-  -|.|
T Consensus       217 e~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~~Dfvl~R~~~~~hp~----~Gd~~-------~g~PtYhfa~~--vDD~  283 (553)
T 3aii_A          217 ENLQRWREMFEMKEGSAVVRVKTDLNHPNPAIRDWVSMRIVEAEHPR----TGTRY-------RVYPMMNFSVA--VDDH  283 (553)
T ss_dssp             HHHHHHHHGGGSCTTSCEEEECCCTTCSSGGGTTCEEEEECCSCBTT----TBTSC-------CEEECHHHHHH--HHHH
T ss_pred             HHHHHHHHHhcCCcCceEEEEEcccccCCCCCCCcEEEEecCCCCCc----cCCCc-------eeeeeeeeeee--eeec
Confidence                        0            0112246899999988777765    66433       28999999981  2788


Q ss_pred             cccccccCC---ccccc-----------------cccccEEEcccchhhcchh
Q psy6851         224 ICRQDELFP---YTEFK-----------------DKYGKVRVHLSQKQQSLKL  256 (948)
Q Consensus       224 ~GG~DL~FP---HHEne-----------------~h~G~l~i~geKMSKSLGN  256 (948)
                      ++|++++|+   ||+|+                 .|+|+|+++|+|||||+||
T Consensus       284 ~~GIThviRG~D~~~nt~~Q~~l~~alG~~~P~y~H~~~L~~~g~KLSKR~~~  336 (553)
T 3aii_A          284 LLGVTHVLRGKDHLANREKQEYLYRHLGWEPPEFIHYGRLKMDDVALSTSGAR  336 (553)
T ss_dssp             HTTCCEEEC-----CHHHHHHHHHHHHTCCCCEEECCCCBC-------CHHHH
T ss_pred             cCCCceEeccHhhhhCHHHHHHHHHHcCCCCCeEEEeeEEecCCceechhhhh
Confidence            999999999   99874                 5788899999999999998

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=99.56  E-value=1.7e-14  Score=168.05  Aligned_cols=111  Identities=14%  Similarity=0.147  Sum_probs=82.8

Q ss_pred             cccccccccCCccccc---------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHH-HHh--
Q psy6851         222 TGICRQDELFPYTEFK---------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKD-HIR--  272 (948)
Q Consensus       222 ih~GG~DL~FPHHEne---------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~-hyR--  272 (948)
                      +|..|.|++|+|+-+.               ..+|+|.++|+|||||+||+|+..++           |+ ++. ...  
T Consensus       303 ~~~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~~G~KMSKS~GNvv~p~d~i~~~GaDalR~~l-l~~~~~~~~  381 (560)
T 3h99_A          303 YHFIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKMSKSRGTFIKASTWLNHFDADSLRYYY-TAKLSSRID  381 (560)
T ss_dssp             EEEEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHH-HHHCCSSCC
T ss_pred             EEEeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEeCCeeccccCCCcCCHHHHHHHcCcHHHHHHH-HHhCCCCCC
Confidence            7889999999998754               23689999999999999999987764           33 332 222  


Q ss_pred             hcCCChhhhH-------------HHHhhHH--------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q psy6851         273 NLKFPATTVS-------------SFEKWTQ--------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDC  325 (948)
Q Consensus       273 ~l~~s~~~l~-------------~~~r~~~--------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeL  325 (948)
                      .++|+.+.+.             .+.|...              .+..+...+..+...+.++| +++++..|+..|++|
T Consensus       382 d~~f~~~~~~~~~~~~l~~~l~n~~~R~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-e~~~~~~a~~~l~~l  460 (560)
T 3h99_A          382 DIDLNLEDFVQRVNADIVNKVVNLASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMAL  460 (560)
T ss_dssp             CEEECHHHHHHHHHHHCCCCCTHHHHTTHHHHHHHSTTBCCSSCSCHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHH
Confidence            2667765431             1122111              13445667788899999999 799999999999999


Q ss_pred             HHHHHhhhc
Q psy6851         326 ISQVNIYLR  334 (948)
Q Consensus       326 VraiN~yLd  334 (948)
                      ++.+|.|++
T Consensus       461 ~~~~n~Yi~  469 (560)
T 3h99_A          461 ADLANRYVD  469 (560)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999976

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=99.54  E-value=1.2e-14  Score=169.80  Aligned_cols=240  Identities=14%  Similarity=0.104  Sum_probs=152.8

Q ss_pred             HHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCcccccc--ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC
Q psy6851          92 KEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVS--EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN  167 (948)
Q Consensus        92 ~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvT--e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~  167 (948)
                      +|.+.|++++++++++.+.|.++++  ||. ++.+.|.|  +|+..|. +++++|.++|++|+..+.|||++..-.-+..
T Consensus        82 ~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~-~D~~~~t~~~~~~~~v~-~~~~~L~~~G~iy~~~~~~~y~~~~~~~l~~  159 (564)
T 3kfl_A           82 AAAKQGVSPMDFTTSVSSEFKQCFQEMNYD-MNYFIRTTNPTHEKLVQ-DIWKKLAAKGDIYLGKYEGWYSVSDESFLTA  159 (564)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHTTCC-CSEEEETTSHHHHHHHH-HHHHHHHHHTCEEEEEEEEEEETTTTEEECG
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHcCCC-CCccccCCCHHHHHHHH-HHHHHHHHCCCEEEeeeeEEecCCcCCCCCH
Confidence            3445677777888888888887777  996 45688888  5999999 7999999999999999999999754211100


Q ss_pred             C-------CccccC----C-----------------ccccc----cccc------------------cCCCCcC------
Q psy6851         168 H-------YYAKLV----P-----------------EAYGD----TKTL------------------QEGEVRG------  191 (948)
Q Consensus       168 ~-------~YgKL~----P-----------------~DFaL----WK~a------------------k~gEp~w------  191 (948)
                      .       .+|+..    |                 ..|..    |-..                  +.|-..|      
T Consensus       160 ~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~gl~D~~ISR~~  239 (564)
T 3kfl_A          160 QNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEKGLFDLSISRKR  239 (564)
T ss_dssp             GGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHCCCCEECEEEG
T ss_pred             HHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhCCCCCccccCcC
Confidence            0       011100    0                 00100    0000                  0111122      


Q ss_pred             --CCCCCCcccCCCCC--------CCC---CCcceeEe---------e--c---cCccccccccccCCccccc-------
Q psy6851         192 --YPPWPARIEGLADE--------TPN---RLKYHIFF---------Y--G---TRETGICRQDELFPYTEFK-------  237 (948)
Q Consensus       192 --espWg~~~~~m~~~--------~~G---RPGWHIEc---------L--G---~~dih~GG~DL~FPHHEne-------  237 (948)
                        ...||-|+|+.+..        ..|   --|||-+.         +  .   +.|+|..|.|.++.|.-..       
T Consensus       240 ~~~~~WGipiP~~~~~v~yVWfDa~~~y~s~~~~~~~~~~~~~~~~~~~~~~~wp~dv~~~GkDii~FH~~~wpa~L~a~  319 (564)
T 3kfl_A          240 ESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDEDHHALNRWPADVHVVGKDILKFHAIYWPAFLMSA  319 (564)
T ss_dssp             GGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSSSTTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHT
T ss_pred             CCCCCCCeecCCCCCCEEEEeccCcHHHHHHhCccccccccccchhcchhhhcCccceEEEeecccchHHHHHHHHHHhC
Confidence              34688777542100        000   01121110         0  0   1268888999998665432       


Q ss_pred             --------cccccEEEcccchhhcchhHHHHHHH-----------HHHHH-HHHhh-cCCChhhhHH-------------
Q psy6851         238 --------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVK-DHIRN-LKFPATTVSS-------------  283 (948)
Q Consensus       238 --------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls-~hyR~-l~~s~~~l~~-------------  283 (948)
                              ..+|+|.++|+|||||+||+|+..++           |+ ++ ..+.+ ++|+.+.+..             
T Consensus       320 g~~~~~~v~~hg~v~~~G~KMSKS~GNvV~p~d~i~~~G~DalR~~l-l~~~~~~~D~~fs~~~~~~~~n~~l~~~l~N~  398 (564)
T 3kfl_A          320 ELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFL-MRESNFQDDGDYSDKNMVARLNGELADTLGNL  398 (564)
T ss_dssp             TCCCCSCEEEECCEEETTEECCTTTTCCCCHHHHHHHHCHHHHHHHH-HHHCCSSCCEECCHHHHHHHHHHTTTTTHHHH
T ss_pred             CCCCCcEEEEcccEeeCCccccccCCCCCCHHHHHHHcCcHHHHHHH-HHcCCcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                    34689999999999999999987664           33 33 34444 7787764421             


Q ss_pred             HHhh-----------------HHHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         284 FEKW-----------------TQADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       284 ~~r~-----------------~~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                      +.|.                 ...+..+...+..+.+.+.++| +++++..|+..|+++++.+|.|++.
T Consensus       399 ~~R~~~~~~~~~g~~p~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~~~~a~~~i~~l~~~~n~Y~~~  466 (564)
T 3kfl_A          399 VSRCVAPKINVNGMWPEPAEYSESDKTLIASLNNLAGTVDHYY-CLPDIQHALIAIFDVLRSLNAYVTE  466 (564)
T ss_dssp             HHHHHCTTTSTTSBCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHh
Confidence            1111                 1124455667788899999999 7999999999999999999999864

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=99.50  E-value=4.5e-14  Score=166.36  Aligned_cols=231  Identities=13%  Similarity=0.079  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHHHHhc--CCCCCCccccccccH-HHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCc
Q psy6851         100 PSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYI-PEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPE  176 (948)
Q Consensus       100 ~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~I-peII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~  176 (948)
                      |+.+.....+.|.+++.  ||.. +++++.|+|+ +.|. ++|+.|.++|++|+++|.||||+++|.+       ++.  
T Consensus       266 w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~~~~~-~vi~~L~~kG~~ye~dGa~~~~~~~~g~-------~~d--  334 (607)
T 1f7u_A          266 WKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESML-KAIDLFKEKGLTHEDKGAVLIDLTKFNK-------KLG--  334 (607)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHH-HHHHHHHHTTCEEEETTEEEEEGGGTCT-------TTC--
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhhhHHH-HHHHHHHhCCCEEEECCcEEEEecccCC-------CCC--
Confidence            66666777777777776  9966 9999999999 8998 7999999999999999999999998821       111  


Q ss_pred             cccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeE-----eeccC-ccccccccccCCcccc------------cc
Q psy6851         177 AYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIF-----FYGTR-ETGICRQDELFPYTEF------------KD  238 (948)
Q Consensus       177 DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIE-----cLG~~-dih~GG~DL~FPHHEn------------e~  238 (948)
                      +..+-|  +.|.+-+.+.     +         -+||+.     .++.. ++|++|+|+.||++..            ..
T Consensus       335 ~~v~~K--sDG~~~Y~t~-----D---------ia~~~~k~~~~~~d~~IyV~g~~q~~~f~q~~~~~~~lG~~~~~~~~  398 (607)
T 1f7u_A          335 KAIVQK--SDGTTLYLTR-----D---------VGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDLQ  398 (607)
T ss_dssp             EEEEEC--TTSCCCHHHH-----H---------HHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGEE
T ss_pred             ceeEec--cCCCcCCCCC-----c---------HHHHHHHHhhcCCCcEEEEEcChHhhHHHHHHHHHHHcCCCcCcEEE
Confidence            122211  1222211110     0         011211     12222 6899999999998762            13


Q ss_pred             ccccEEEcccchhhcchhHHHHHHHHH--------------------------------------HHHHHHhh-cCCChh
Q psy6851         239 KYGKVRVHLSQKQQSLKLVVIMKEFFL--------------------------------------NVKDHIRN-LKFPAT  279 (948)
Q Consensus       239 h~G~l~i~geKMSKSLGN~vti~ef~l--------------------------------------~ls~hyR~-l~~s~~  279 (948)
                      |.++..+.  ||||++||++++++++-                                      .|+.|||+ +.|+.+
T Consensus       399 Hv~fg~v~--kMSkR~G~~v~L~dLlde~~~~a~~~~~~~~~~~~~~~e~~~~a~~vgi~avry~~Ls~~~~s~~~Fd~d  476 (607)
T 1f7u_A          399 HVNFGMVQ--GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWE  476 (607)
T ss_dssp             EECCCCEE--SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTCCEECCHH
T ss_pred             Eecccccc--cccCCCCCcccHHHHHHHHHHHHHHHHHhCcccccchhhHHHHHHHHHHHHHHHHHhccCCCCCcccCHH
Confidence            44333333  79999999998776542                                      24557777 788775


Q ss_pred             hhH------------HHHhhHH------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHH
Q psy6851         280 TVS------------SFEKWTQ------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIR  323 (948)
Q Consensus       280 ~l~------------~~~r~~~------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLf  323 (948)
                      .+.            +..|+..                        .+..|...+.++++.+..|+ +++..+....-|+
T Consensus       477 ~~~~~~g~t~pylqYa~aRi~SIlrka~~~~~~~~~~~~~~~l~~~~e~~L~~~l~~fp~vv~~a~-~~~~P~~l~~Yl~  555 (607)
T 1f7u_A          477 RMLSFEGDTGPYLQYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAI-KTHEPTTVVTYLF  555 (607)
T ss_dssp             HHHCCSSSSHHHHHHHHHHHHHHHHHTTTSCHHHHTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH-HHCCHHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcCCCcccccccchhhcCCHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHH
Confidence            432            1112110                        11223345567788888888 6899999999999


Q ss_pred             HHHHHHHhhhcCC-----C------CHHHHHHHHHHHHHHHhHccccc
Q psy6851         324 DCISQVNIYLRGT-----P------NQLLLRDIGAYVTKILTVFGCIG  360 (948)
Q Consensus       324 eLVraiN~yLd~~-----~------~~~lL~~i~~~V~~mL~VLGL~~  360 (948)
                      +|++..|++-+..     .      ...++..+...+..-|.+|||..
T Consensus       556 ~La~~fn~fY~~~~Vl~~~~~~~~aRL~L~~a~~~vL~~gL~LLGI~~  603 (607)
T 1f7u_A          556 KLTHQVSSCYDVLWVAGQTEELATARLALYGAARQVLYNGMRLLGLTP  603 (607)
T ss_dssp             HHHHHHHHHHHHCCSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999999965432     1      11244455566777799999864

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*

Probab=99.49  E-value=1.1e-15  Score=180.05  Aligned_cols=61  Identities=11%  Similarity=0.086  Sum_probs=56.6

Q ss_pred             ccccHHHHHHHHHHHHhhcCCCCCCeeecccccH-HHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         624 FATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYI-PEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       624 f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i-~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      +..+...+.+.|.+|+++|||.. |.+++.|+|+ +.|.+.|+.|.++|+ |+.+|.+||++++
T Consensus       266 w~~~~~~~~~~~~~~~~~L~V~f-D~~~~ES~~~~~~~~~vi~~L~~kG~~ye~dGa~~~~~~~  328 (607)
T 1f7u_A          266 WKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTK  328 (607)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcc-eeecCcchhhhhHHHHHHHHHHhCCCEEEECCcEEEEecc
Confidence            45678899999999999999987 9999999999 899999999999999 9999999999876

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A

Probab=99.49  E-value=7e-15  Score=171.20  Aligned_cols=59  Identities=15%  Similarity=0.007  Sum_probs=52.4

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.+||++|||.. +.+.|++  +|...|.+++++|.++|+ |+.++.+||+++.+
T Consensus        85 ~~~~~~~~~~~~~~~lgi~~-d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~~~~~~~  146 (560)
T 3h99_A           85 MIGEMSQEHQTDFAGFNISY-DNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKG  146 (560)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-SEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHcCCCC-CCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEeecCccC
Confidence            45689999999999999975 6677777  689999999999999999 99999999999884

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A

Probab=99.47  E-value=5.9e-15  Score=171.21  Aligned_cols=141  Identities=9%  Similarity=0.034  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcE-----EEeeccCCCCCC-C-----
Q psy6851         102 EMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSV-----YFNVNAFDSQPN-H-----  168 (948)
Q Consensus       102 el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsV-----YFDv~~f~~~g~-~-----  168 (948)
                      -....+.+++.++|+  |+.+++..+|+|+|+++++ +++++||++|+||.-..+.     |..+...+.+.+ .     
T Consensus        72 R~~~e~~~~I~edL~wLGl~wde~~~~qSer~~~~~-~~a~~Li~~G~AY~c~ct~eel~~~r~~~~~~g~~~~~R~~s~  150 (553)
T 1qtq_A           72 KEDIEYVESIKNDVEWLGFHWSGNVRYSSDYFDQLH-AYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSV  150 (553)
T ss_dssp             GCCHHHHHHHHHHHHHTTCCCSSSCEEGGGGHHHHH-HHHHHHHHTTSEEEECCCHHHHHHHHCCSSSCCCCCTTTTCCH
T ss_pred             hcCHHHHHHHHHHHHHcCCCCCCCCeehcccHHHHH-HHHHHHHHCCCceecCCCHHHHHHHhcccccCCCCCccccCch
Confidence            345567888888888  9999999999999999999 7999999999999632111     111111222211 0     


Q ss_pred             ----------------------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccC
Q psy6851         169 ----------------------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTR  220 (948)
Q Consensus       169 ----------------------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~  220 (948)
                                                  .-.+.++.||++||...++++.|.++|.           |+|+||+.|   .
T Consensus       151 ee~~~~fe~m~~G~~~~g~~~lR~kid~~~~~~~~~D~Vl~R~~~~~h~~~~d~w~-----------g~PtY~la~---v  216 (553)
T 1qtq_A          151 EENLALFEKMRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWC-----------IYPMYDFTH---C  216 (553)
T ss_dssp             HHHHHHHHHHHTTCSCTTSCEEEECSCTTCSSGGGSSCEEEEECCCCBTTTBTSCS-----------EEECHHHHH---H
T ss_pred             hhhHhHHHHHhCCCccCCceEEEEecccccCCCCCCCcEEEEecCCCCCccCCCCc-----------ccccccccc---E
Confidence                                        0112345799999999888888888884           899999754   3


Q ss_pred             -ccccccccccC---Cccccc---------------c---ccccEEEcccchhhcchhH
Q psy6851         221 -ETGICRQDELF---PYTEFK---------------D---KYGKVRVHLSQKQQSLKLV  257 (948)
Q Consensus       221 -dih~GG~DL~F---PHHEne---------------~---h~G~l~i~geKMSKSLGN~  257 (948)
                       |.|++|++++|   |||+|.               .   |+|||.++|+|||||.||.
T Consensus       217 vDDh~~GITHviRg~e~~~n~~~q~~l~~alg~~~~P~~~~f~hLn~~g~KLSKR~~~~  275 (553)
T 1qtq_A          217 ISDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL  275 (553)
T ss_dssp             HHHHHTTCSEEEEEGGGTTTHHHHHHHHHTSCCSCCCEEEEECCCCBTTSCCCHHHHHH
T ss_pred             EEeccCCcceEeeccchhhhHHHHHHHHHHcCCCCCCCeEEEEeecCCCcccccccccc
Confidence             88999999999   999973               1   6888999999999999994

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}

Probab=99.44  E-value=1.6e-14  Score=173.86  Aligned_cols=139  Identities=12%  Similarity=0.076  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcE-----EEeeccCCCCCC----------
Q psy6851         105 KMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSV-----YFNVNAFDSQPN----------  167 (948)
Q Consensus       105 ~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsV-----YFDv~~f~~~g~----------  167 (948)
                      ..+.+++.++|+  |+.+++..+|+|+|++.++ +++++||++|+||.-..+.     |..+..++.+..          
T Consensus       115 ~e~~~~IledL~wLGl~wde~~~~qSer~d~y~-e~a~~LI~~G~AY~c~ct~eel~~~r~~~~~~G~~s~~R~ls~ee~  193 (851)
T 2hz7_A          115 QEYVDSIADDLKWLGLDWGEHFYYASDYFDRYY-AYAEQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEEN  193 (851)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCEEEGGGGHHHHH-HHHHHHHHTTSEEEECSCHHHHHHHHCBTTBCCCCCTTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcccHhhhHHHHH-HHHHHHHHCCCcEeecCCHHHHHHHhcchhccCCCcccccCCHHHH
Confidence            346777888877  9999999999999999999 7999999999999632111     111111111100          


Q ss_pred             ----------C--------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEeeccCccc
Q psy6851         168 ----------H--------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFFYGTRETG  223 (948)
Q Consensus       168 ----------~--------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEcLG~~dih  223 (948)
                                .              ...+.++.||++||...++++.|.++|.           |+|+||++|-  -|.|
T Consensus       194 l~~fe~m~~G~~~~g~~vlR~Kid~~~~~~~~~DfVl~R~~~~~h~~~gd~w~-----------g~PtYhfA~v--VDD~  260 (851)
T 2hz7_A          194 LDLLRRMKAGEFADGEHVLRAKIDLTAPNMKLRDPVLYRIVNKPHFRTSDEWH-----------IYPAYDFEHP--LQDA  260 (851)
T ss_dssp             HHHHHHHHTTCSCTTSCEEEECCCTTCSSGGGSSCEEEEECCCCBTTTBTSCS-----------EEECHHHHHH--HHHH
T ss_pred             hhHHHHHhcCCcccCCeeEEEeccccccCCCCCCcEEEEecCCCCCccCCCCc-----------cccccceeeE--eeec
Confidence                      0              0122345799999999888888888884           8999999982  2678


Q ss_pred             cccccccCC---ccccc-------------c-----ccccEEEcccchhhcchhH
Q psy6851         224 ICRQDELFP---YTEFK-------------D-----KYGKVRVHLSQKQQSLKLV  257 (948)
Q Consensus       224 ~GG~DL~FP---HHEne-------------~-----h~G~l~i~geKMSKSLGN~  257 (948)
                      .+|++++++   ||+|.             .     |+|||.++|+|||||.||.
T Consensus       261 ~~GITHViRG~D~~~n~~~q~~l~~alG~~~~P~~~~fahLn~~g~KLSKR~g~~  315 (851)
T 2hz7_A          261 IEGVTHSMCSLEFVDNRAIYDWLMEKLNFDPRPHQYEFGRRGLEYTITSKRKLRE  315 (851)
T ss_dssp             HHTCSEEEEEGGGTTTHHHHHHHHHHTTCSSCCEEEEECCEEETTCCCCHHHHHH
T ss_pred             cCCcceeecchhhhhChHHHHHHHHHcCCCCCCCceEEEEecCCCcccccccccc
Confidence            888888888   87762             1     6899999999999999984

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}

Probab=99.41  E-value=7.5e-14  Score=163.02  Aligned_cols=59  Identities=10%  Similarity=0.008  Sum_probs=53.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc--ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS--EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs--e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++++|.+.|.+||++|||.. +.+.|++  +|+..|.+++++|.++|+ |+..+.+||+++++
T Consensus        93 ~~~~~~~~~~~~~~~lgi~~-D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~y~~~~~  154 (564)
T 3kfl_A           93 FTTSVSSEFKQCFQEMNYDM-NYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGWYSVSDE  154 (564)
T ss_dssp             HHHHHHHHHHHHHHHTTCCC-SEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHcCCCC-CccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEEecCCcC
Confidence            46789999999999999985 6788998  599999999999999999 99999999999884

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=99.29  E-value=2.6e-12  Score=155.69  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=89.7

Q ss_pred             ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |+|+||.|++||||.|+                 +|+|+|.++|+|||||+||+|+..++           |++.+.+|+
T Consensus       605 Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~dli~~yGaDalR~~ll~~~~~~  684 (810)
T 1wkb_A          605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHD  684 (810)
T ss_dssp             SEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred             eEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCcCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            79999999999998864                 46799999999999999999987754           443478898


Q ss_pred             h-cCCChhhhHH----HHhhHH------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHH
Q psy6851         273 N-LKFPATTVSS----FEKWTQ------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDS-IRDCISQ  328 (948)
Q Consensus       273 ~-l~~s~~~l~~----~~r~~~------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa-LfeLVra  328 (948)
                      + ++|+.+.+..    +.|+..                  .+..+...+..+...|.++| |+|+++.|+.. ++.+++.
T Consensus       685 ~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~~~-~~~~~~~a~~~~~~~l~~~  763 (810)
T 1wkb_A          685 SDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSIMND  763 (810)
T ss_dssp             CCEEECHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Confidence            8 9999887652    222221                  12234455677889999999 99999999985 5799999


Q ss_pred             HHhhhcC
Q psy6851         329 VNIYLRG  335 (948)
Q Consensus       329 iN~yLd~  335 (948)
                      +|.|++.
T Consensus       764 ~n~yi~~  770 (810)
T 1wkb_A          764 LRWYLRR  770 (810)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=99.29  E-value=9.2e-12  Score=153.72  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             ccccccccccCCccccc-----------------cccccEEEcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTEFK-----------------DKYGKVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne-----------------~h~G~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |+|+||.|++||||.++                 +|+|+|.++|+|||||+||+|+..++           |++.+++|+
T Consensus       605 Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNvv~p~d~i~~yGaDalR~~ll~~~~~~  684 (967)
T 1wz2_A          605 DWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHD  684 (967)
T ss_dssp             SEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTT
T ss_pred             eEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCCCCHHHHHHHhChHHHHHHHHhCCCCC
Confidence            78999999999998864                 46789999999999999999987753           454478898


Q ss_pred             h-cCCChhhhHH----HHhhHH------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHHHH
Q psy6851         273 N-LKFPATTVSS----FEKWTQ------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSI-RDCISQ  328 (948)
Q Consensus       273 ~-l~~s~~~l~~----~~r~~~------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaL-feLVra  328 (948)
                      + ++|+.+.+..    +.|+..                  .+..+...+..+...|.++| |+|+++.|+.++ +.+++.
T Consensus       685 ~d~~fs~~~~~~~~~~l~rl~n~~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~~~-e~~~f~~A~~~~~~~l~~~  763 (967)
T 1wz2_A          685 SDFDWRRKEVGKLRKQIERFYELISQFAEYEVKGNVELKDIDRWMLHRLNKAIKETTNAL-EEFRTRTAVQWAFYSIMND  763 (967)
T ss_dssp             CCEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHTHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Confidence            8 9999887652    222221                  12233445677889999999 999999999865 799999


Q ss_pred             HHhhhcC
Q psy6851         329 VNIYLRG  335 (948)
Q Consensus       329 iN~yLd~  335 (948)
                      +|.|++.
T Consensus       764 ~n~Yi~~  770 (967)
T 1wz2_A          764 LRWYLRR  770 (967)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999874

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*

Probab=99.12  E-value=1.2e-11  Score=134.48  Aligned_cols=119  Identities=10%  Similarity=-0.028  Sum_probs=74.3

Q ss_pred             HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee---------CCcEEEeeccC-CCCCCCCccccC
Q psy6851         107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES---------NGSVYFNVNAF-DSQPNHYYAKLV  174 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes---------~GsVYFDv~~f-~~~g~~~YgKL~  174 (948)
                      +++.+.++++  ||.++...++.|++++.+. ++|++|+++|+||.-         .|.|||.+-++ +.     ||++.
T Consensus        56 ~~~~I~~dL~~LGl~~D~~~~~qSer~~~y~-~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~-----~g~~~  129 (298)
T 1nzj_A           56 AAETILRQLEHYGLHWDGDVLWQSQRHDAYR-EALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHH-----GPDNA  129 (298)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCEEGGGCHHHHH-HHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCC-----CSTTC
T ss_pred             HHHHHHHHHHHcCCCCCCCCeeeeCCHHHHH-HHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCc-----CCCCC
Confidence            4556666666  9998888999999999999 799999999999973         56799988776 32     33321


Q ss_pred             ----------------------------CccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe------eccC
Q psy6851         175 ----------------------------PEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF------YGTR  220 (948)
Q Consensus       175 ----------------------------P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc------LG~~  220 (948)
                                                  +.||++||                       ..|+|+||++|      .|-+
T Consensus       130 ~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL~R-----------------------~dG~PtY~la~vvdD~~~giT  186 (298)
T 1nzj_A          130 AVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHR-----------------------RDGLFAYNLAVVVDDHFQGVT  186 (298)
T ss_dssp             EEEECCSSCCCEEEETTTEEEECCHHHHHSCCEEEC-----------------------TTSCBCHHHHHHHHHHHTTCC
T ss_pred             cEEEecCCcccceehhhCcccccCcccCCCCEEEEC-----------------------CCCCEeeeeeeeeEHHhcCCC
Confidence                                        23344433                       24999999998      5655


Q ss_pred             -ccccccccccCCccc--------------cccccccE-EEcccchhhcchhH
Q psy6851         221 -ETGICRQDELFPYTE--------------FKDKYGKV-RVHLSQKQQSLKLV  257 (948)
Q Consensus       221 -dih~GG~DL~FPHHE--------------ne~h~G~l-~i~geKMSKSLGN~  257 (948)
                       .|+  |.||+ ++..              ...|.+.| ..+|+||||+.||+
T Consensus       187 hvIr--G~D~l-~~t~~q~~l~~alG~~~p~~~H~pll~~~~g~KLSKR~g~~  236 (298)
T 1nzj_A          187 EIVR--GADLI-EPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHAP  236 (298)
T ss_dssp             EEEE--EGGGH-HHHHHHHHHHHHHTCCCCEEEEECBCCC-------------
T ss_pred             EEEe--Ccccc-ccHHHHHHHHHHcCCCCCeEEEeeeeECCCCCcccccCCcc
Confidence             566  78885 2211              11566665 78999999999997

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}

Probab=99.09  E-value=2.4e-11  Score=140.10  Aligned_cols=130  Identities=8%  Similarity=-0.008  Sum_probs=92.4

Q ss_pred             HHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec-----------------cCCCCCC
Q psy6851         107 ETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVN-----------------AFDSQPN  167 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~-----------------~f~~~g~  167 (948)
                      +++.+.++|.  |+.++...+|.|++++.+. +++++||++|+||.     +|.+.                 .|++...
T Consensus        52 ~~~~i~~dL~wLGl~wde~~~~QS~r~~~y~-~~~~~Li~~G~AY~-----c~ct~~el~~~r~~~~~~g~~~~y~~~cr  125 (492)
T 2cfo_A           52 YTENILEGLQWLGLTWDEGPYFQSDRLDLYR-QAIQTLLDKGLAYY-----CYCTPEELEALRAEQKAKGQAPRYDNRHR  125 (492)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEEEGGGCHHHHH-HHHHHHHHTTSEEE-----ECCCHHHHHHHHHHHHHHTCCSSCCCTTT
T ss_pred             HHHHHHHHHHHcCCCCCCCCccccCCHHHHH-HHHHHHHHCCCceE-----ecCCHHHHHHHHHHHHhcCCCCCCCcccc
Confidence            4566666666  9988888999999999999 79999999999994     55443                 2322100


Q ss_pred             C--------------------------------------CccccCC-ccccccccccCCCCcCCCCCCCcccCCCCCCCC
Q psy6851         168 H--------------------------------------YYAKLVP-EAYGDTKTLQEGEVRGYPPWPARIEGLADETPN  208 (948)
Q Consensus       168 ~--------------------------------------~YgKL~P-~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~G  208 (948)
                      +                                      .+.+.++ .||++||..+       +||           .|
T Consensus       126 ~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~v~G~~~~~~~~~~~D~Vl~R~d~-------~p~-----------~G  187 (492)
T 2cfo_A          126 HLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGGDMVIARAAP-------RGE-----------IG  187 (492)
T ss_dssp             TCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCSSEEEECSCC-------TTS-----------CC
T ss_pred             cCCHHHHHHHHhCCCCceEEEEcCCCCceEEEecceeeeeecccccCCCeEEEEecC-------CCC-----------CC
Confidence            0                                      0011234 6777777643       343           29


Q ss_pred             CCcceeEeeccCccccccccccCC---ccccc-----------------ccccc-EEEcccchhhcchhHHHHHHH
Q psy6851         209 RLKYHIFFYGTRETGICRQDELFP---YTEFK-----------------DKYGK-VRVHLSQKQQSLKLVVIMKEF  263 (948)
Q Consensus       209 RPGWHIEcLG~~dih~GG~DL~FP---HHEne-----------------~h~G~-l~i~geKMSKSLGN~vti~ef  263 (948)
                      +|+||++|-  -|.|.+|++++++   ||+|.                 .|.++ +..+|+||||+.||+ +|.++
T Consensus       188 ~PtY~la~v--vDD~~~gIthviRG~D~~~~t~~q~~l~~alg~~~P~~~H~plil~~~g~KLSKr~g~~-~l~~~  260 (492)
T 2cfo_A          188 YPLYNLVVV--VDDIAMGITDVIRGEDHIGNTPKQILLYEALGATPPNFAHTPLILNSTGQKLSKRDGVT-SISDF  260 (492)
T ss_dssp             CBCHHHHHH--HHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTTCCCCEEEEECCEECSSSSBCCTTSSCC-BHHHH
T ss_pred             ceeehhhhh--hhhhcCCCCeEEEchhhhhCHHHHHHHHHHcCCCCceEEEeeeEECCCCCEecccCCcc-cHHHH
Confidence            999999883  3778899999999   98874                 33444 467899999999996 55554

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=98.79  E-value=5.2e-09  Score=127.31  Aligned_cols=113  Identities=17%  Similarity=0.088  Sum_probs=82.8

Q ss_pred             ccccccccccCCccccc----------------cccccEE-EcccchhhcchhHHHHHHH----------HHHHHHH-Hh
Q psy6851         221 ETGICRQDELFPYTEFK----------------DKYGKVR-VHLSQKQQSLKLVVIMKEF----------FLNVKDH-IR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------~h~G~l~-i~geKMSKSLGN~vti~ef----------~l~ls~h-yR  272 (948)
                      |+|++|.|++|+||.+.                ..+|++. .+|+|||||+||+|+..++          |.+++.+ |+
T Consensus       546 dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNvV~p~dli~~yGaDalR~~ll~~~~~~  625 (821)
T 1ile_A          546 DFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE  625 (821)
T ss_dssp             SBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHSCSS
T ss_pred             ccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCCCCHHHHHHHhCHHHHHHHHHhCCCCC
Confidence            68999999999998753                1245655 4899999999999988764          2336665 88


Q ss_pred             h-cCCChhhhHH-----HHhhHH---------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHH
Q psy6851         273 N-LKFPATTVSS-----FEKWTQ---------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSAL  319 (948)
Q Consensus       273 ~-l~~s~~~l~~-----~~r~~~---------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~AL  319 (948)
                      + ++|+.+.+..     +.++..                           .+..+...+..+...|.++| ++|+++.|+
T Consensus       626 ~d~~fs~~~l~~~~~~~~~kl~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~l~~~~~~v~~a~-e~~~f~~A~  704 (821)
T 1ile_A          626 ADRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMDRWLLARMQDLIQRVTEAL-EAYDPTTSA  704 (821)
T ss_dssp             SCEECCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCCTTSCCCSTTSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             CCcEecHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcccccccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHH
Confidence            8 9999876542     112111                           01123345667889999999 699999999


Q ss_pred             HHHHHHH--HHHHhhhc
Q psy6851         320 DSIRDCI--SQVNIYLR  334 (948)
Q Consensus       320 aaLfeLV--raiN~yLd  334 (948)
                      ++|++++  ..+|.|++
T Consensus       705 ~~l~~f~~~~~~n~Yl~  721 (821)
T 1ile_A          705 RALRDFVVEDLSQWYVR  721 (821)
T ss_dssp             HHHHHHHHHHSSTTTHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            9999999  67888774

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=98.64  E-value=2.3e-08  Score=122.23  Aligned_cols=113  Identities=16%  Similarity=0.122  Sum_probs=83.2

Q ss_pred             ccccccccccCCcccccc----------------ccccEE-EcccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTEFKD----------------KYGKVR-VHLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne~----------------h~G~l~-i~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |++++|.|.+|+||.+.+                .+|+|. .+|+|||||+||+|+..++           |++..++|+
T Consensus       483 d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNvIdP~dli~~yGaDalR~~ll~~~~~~  562 (862)
T 1gax_A          483 DVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIYLATGG  562 (862)
T ss_dssp             SCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred             eEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence            688899999999998641                135665 5889999999999876653           442334787


Q ss_pred             h-cCCChhhhHHH----HhhHH---------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q psy6851         273 N-LKFPATTVSSF----EKWTQ---------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCI  326 (948)
Q Consensus       273 ~-l~~s~~~l~~~----~r~~~---------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLV  326 (948)
                      + ++|+.+.+...    .++..                     .+..+...+..+...+.++| ++|++..|+.+|++++
T Consensus       563 ~D~~fs~~~l~~~~~f~nkl~N~~rf~~~~~~~~~~~~~~~~~~D~~il~~l~~~~~~v~~a~-e~~~f~~A~~~l~~f~  641 (862)
T 1gax_A          563 QDIRLDLRWLEMARNFANKLYNAARFVLLSREGFQAKEDTPTLADRFMRSRLSRGVEEITALY-EALDLAQAAREVYELV  641 (862)
T ss_dssp             CCEECCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCBCCCCHHHHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccccCCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHH
Confidence            7 89998766421    22111                     12234456778899999999 8999999999999999


Q ss_pred             --HHHHhhhc
Q psy6851         327 --SQVNIYLR  334 (948)
Q Consensus       327 --raiN~yLd  334 (948)
                        ..+|.|++
T Consensus       642 ~~~~~n~Yie  651 (862)
T 1gax_A          642 WSEFCDWYLE  651 (862)
T ss_dssp             HHHTTTTHHH
T ss_pred             HHHhhHHHHH
Confidence              45788875

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=98.62  E-value=4e-08  Score=120.26  Aligned_cols=84  Identities=11%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             chhhcchhHHHHHHH-----------HHHHHH-HHhh-cCCChhhhHHH----HhhHH---------------------H
Q psy6851         249 QKQQSLKLVVIMKEF-----------FLNVKD-HIRN-LKFPATTVSSF----EKWTQ---------------------A  290 (948)
Q Consensus       249 KMSKSLGN~vti~ef-----------~l~ls~-hyR~-l~~s~~~l~~~----~r~~~---------------------a  290 (948)
                      |||||+||+|+..++           |+ ++. +|++ ++|+++.+...    +|+..                     .
T Consensus       639 KMSKSkGNvVdP~diIekYGADalRl~l-l~~~~~~~dl~~s~~~ie~a~rfl~rlwn~~~~~~~~~~~~~~~~~~l~~~  717 (880)
T 4arc_A          639 KMSKSKNNGIDPQVMVERYGADTVRLFM-MFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTAKGDVAALNVDALTEN  717 (880)
T ss_dssp             ECCTTTTCCCCHHHHHHHHCHHHHHHHH-HHSSCTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCSTTCCHH
T ss_pred             cccCcCCCCCCHHHHHHHcCchHHHHHH-HhcCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHH
Confidence            999999999987764           44 444 8998 99999876532    22211                     1


Q ss_pred             hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhh
Q psy6851         291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYL  333 (948)
Q Consensus       291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yL  333 (948)
                      +..+...+.++...|.++|+|+|++..|+++|++|++.+|++.
T Consensus       718 D~~ll~~l~~~i~~V~~a~ed~~~fntAi~~l~efvn~l~k~~  760 (880)
T 4arc_A          718 QKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP  760 (880)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHhhh
Confidence            2234456778889999999888999999999999999999874

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=98.49  E-value=9.2e-08  Score=117.77  Aligned_cols=112  Identities=14%  Similarity=0.177  Sum_probs=81.7

Q ss_pred             ccccccccccCCccccc----------------cccccEEE-cccchhhcchhHHHHHHH-----------HHHHHHHHh
Q psy6851         221 ETGICRQDELFPYTEFK----------------DKYGKVRV-HLSQKQQSLKLVVIMKEF-----------FLNVKDHIR  272 (948)
Q Consensus       221 dih~GG~DL~FPHHEne----------------~h~G~l~i-~geKMSKSLGN~vti~ef-----------~l~ls~hyR  272 (948)
                      |++++|.|.+|.|....                ..+|+|.. +|+|||||+||+|+..++           |+ ++++|+
T Consensus       550 Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNvV~P~dvi~~yGaDalR~~l-ls~~~~  628 (917)
T 1ffy_A          550 DMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWV-SSTDYL  628 (917)
T ss_dssp             SEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCCCCHHHHHHHTCHHHHHHHH-HTSCTT
T ss_pred             eEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCcCChHHHHHhCCHHHHHHHH-hccCCC
Confidence            67889999998764321                23588885 899999999999987754           34 567888


Q ss_pred             h-cCCChhhhHH----HHhhHH--------------------------HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHH
Q psy6851         273 N-LKFPATTVSS----FEKWTQ--------------------------ADLELSTRFIQTKNNVHAALCDNMDTRSALDS  321 (948)
Q Consensus       273 ~-l~~s~~~l~~----~~r~~~--------------------------ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaa  321 (948)
                      + ++|+++.+..    +.++..                          .+..+...+.++...+.++| ++|+++.|++.
T Consensus       629 ~D~~fs~~~l~~~~~~~~kl~n~~r~~l~nl~~~~~~~~~v~~~~l~~~D~~il~~l~~~~~~v~~a~-e~~~f~~a~~~  707 (917)
T 1ffy_A          629 ADVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTINNY-ENFDYLNIYQE  707 (917)
T ss_dssp             SCEECCHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHCCCGGGSCHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccCCccccCHHHHHHHHHHHHHHHHHHHHH-HccCHHHHHHH
Confidence            8 8999876541    222211                          01223345667889999999 89999999999


Q ss_pred             HHHHHH--HHHhhhc
Q psy6851         322 IRDCIS--QVNIYLR  334 (948)
Q Consensus       322 LfeLVr--aiN~yLd  334 (948)
                      |++++.  .+|.|++
T Consensus       708 l~~f~~~~l~~~Yl~  722 (917)
T 1ffy_A          708 VQNFINVELSNFYLD  722 (917)
T ss_dssp             HHHHHHCCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998  5677764

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=98.49  E-value=1.6e-07  Score=107.88  Aligned_cols=196  Identities=11%  Similarity=0.130  Sum_probs=113.2

Q ss_pred             HHHHHHHHcCCeeeeCCcEEEeeccCCCCCCCCccccCCccccccccccCCCCcCCC--------CCCCcccCCCCCCCC
Q psy6851         137 SYIEKIIANGLAYESNGSVYFNVNAFDSQPNHYYAKLVPEAYGDTKTLQEGEVRGYP--------PWPARIEGLADETPN  208 (948)
Q Consensus       137 ~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~~~YgKL~P~DFaLWK~ak~gEp~wes--------pWg~~~~~m~~~~~G  208 (948)
                      +.|+.|.++|++|+++|.++|+++.|.+          +.|+.+-|.  +|.+-..+        -+.          .|
T Consensus       177 ~vv~~L~~~g~~~e~dGa~~~~~~~~g~----------~~~~vl~ks--DG~~~Y~t~DiA~~~~r~~----------~~  234 (464)
T 3fnr_A          177 ATLESLKEHKGIYEQEGKIWLASSQKGD----------EKDRVIIRE--DGRGTYLAADIVYHKDKMS----------RG  234 (464)
T ss_dssp             HHHHHHHHTTCEEEETTEEEECGGGGTC----------SSCEEEECT--TSCBCHHHHHHHHHHHHHT----------SS
T ss_pred             HHHHHHHHCCCEEEeCCeEEEEecccCC----------CCceEEEeC--CCceehhhHHHHHHHHHHH----------cC
Confidence            4567999999999999999999987643          113333221  23220000        000          01


Q ss_pred             CCcceeEeeccC-cccc---------ccccccCCccc-cccccccEEE--ccc--chhhcchhHHHHHHHH---------
Q psy6851         209 RLKYHIFFYGTR-ETGI---------CRQDELFPYTE-FKDKYGKVRV--HLS--QKQQSLKLVVIMKEFF---------  264 (948)
Q Consensus       209 RPGWHIEcLG~~-dih~---------GG~DL~FPHHE-ne~h~G~l~i--~ge--KMSKSLGN~vti~ef~---------  264 (948)
                       +.|-|-..|.. ..|.         -|.+   |- . ...++|+|++  +|+  |||||+||+|++.+++         
T Consensus       235 -~d~~Iyv~G~dq~~~f~~l~~~l~~lG~~---~~-~~~h~~~g~V~l~~dG~~~KMSKr~Gn~v~l~dll~~~g~dalR  309 (464)
T 3fnr_A          235 -YGKCINIWGADHHGYIPRMKAAMEFLGFD---SN-NLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALR  309 (464)
T ss_dssp             -CSEEEEEEEGGGGGGHHHHHHHHHTTTCC---GG-GEEEEEECCEEEEETTEECCC---CCSSCBHHHHHHHHCHHHHH
T ss_pred             -CCeEEEEecCcHHHHHHHHHHHHHHcCCC---cc-ceEEEEeeeEEecCCCcccCCcCcCCCCCCHHHHHhhccHHHHH
Confidence             23333334432 2221         1222   11 1 1145789877  775  9999999999888753         


Q ss_pred             -HHHHHHHhh-cCCChhhhH-------------HHHhhHH----------------------HhHHHhHHHHHHHHHHHH
Q psy6851         265 -LNVKDHIRN-LKFPATTVS-------------SFEKWTQ----------------------ADLELSTRFIQTKNNVHA  307 (948)
Q Consensus       265 -l~ls~hyR~-l~~s~~~l~-------------~~~r~~~----------------------ad~eL~~~l~el~e~F~a  307 (948)
                       ..++.++++ ++|+.+.+.             ++.|+..                      .+..+...+.++.+.+..
T Consensus       310 y~~l~~~~~~d~~Fd~~~~~~~~n~npv~YlqYa~aRi~silrk~~~~~~~~~~~~~~~L~~~e~~Ll~~L~~~~~~v~~  389 (464)
T 3fnr_A          310 YIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEALNLKAVLND  389 (464)
T ss_dssp             HHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTTCCCTTCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHhcCCCCCCccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhccCCCccccChhhCChHHHHHHHHHHHHHHHHHH
Confidence             225556665 555544321             1122211                      123344566777888888


Q ss_pred             HHhhcCChHHHHHHHHHHHHHHHhhhcCC-----CCH-----HHHHHHHHHHHHHHhHcccccc
Q psy6851         308 ALCDNMDTRSALDSIRDCISQVNIYLRGT-----PNQ-----LLLRDIGAYVTKILTVFGCIGD  361 (948)
Q Consensus       308 AL~DDFNTP~ALaaLfeLVraiN~yLd~~-----~~~-----~lL~~i~~~V~~mL~VLGL~~~  361 (948)
                      |+ ++++...++..|++|++..|++.+..     ...     ..+..+. .+..-|.+|||...
T Consensus       390 a~-~~~ep~~i~~yL~~La~~~n~fY~~~~vl~~~~~~~~aRL~L~~a~-vL~~gL~lLGi~ap  451 (464)
T 3fnr_A          390 AF-EARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSLVAL-SIKTAFSLMGIEAK  451 (464)
T ss_dssp             HH-HHTCTTHHHHHHHHHHHHHHHHHHHCCCTTSTTHHHHHHHHHHHHH-HHHHHHHHTTCCCC
T ss_pred             HH-HcCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCHHHHHHHHHHHHHH-HHHHHHHhcCCCch
Confidence            98 89999999999999999999987642     111     1122223 67777999999653

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}

Probab=98.36  E-value=2e-07  Score=115.34  Aligned_cols=43  Identities=23%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      ++|+|+||.|++||||.++++|+.++++..             .+|+|||||+||+
T Consensus       603 P~Di~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNv  658 (967)
T 1wz2_A          603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNV  658 (967)
T ss_dssp             SCSEEEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEESSSCCCTTTCCC
T ss_pred             CCeEEeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEeeCCEEccccccCC
Confidence            689999999999999999999999987641             5999999999999

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}

Probab=98.34  E-value=6.8e-08  Score=117.27  Aligned_cols=43  Identities=23%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCC----C---------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTH----D---------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~----~---------~~g~kmsKsl~n~  875 (948)
                      ++|||+||.|++||||.++++|+.++++.    .         .+|+|||||+||+
T Consensus       603 p~Di~~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~~G~KMSKS~GNv  658 (810)
T 1wkb_A          603 PLDWRCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTLEGQKMSKSKGNV  658 (810)
T ss_dssp             SCSEEEEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEETTBCCCTTTTCC
T ss_pred             CceEEeecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEeCCeehhhcCCCc
Confidence            68999999999999999999999998764    1         6999999999999

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=98.30  E-value=1.9e-06  Score=105.81  Aligned_cols=144  Identities=15%  Similarity=0.202  Sum_probs=78.0

Q ss_pred             cchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhhHH----HHhhHH----------------------
Q psy6851         248 SQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTVSS----FEKWTQ----------------------  289 (948)
Q Consensus       248 eKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l~~----~~r~~~----------------------  289 (948)
                      +|||||+||+|+..++           |++..+.|.+ ++|+.+.+..    +.|+..                      
T Consensus       636 ~KMSKSkGNvVdP~diI~~yGADalRl~ll~~~~~~~D~~fs~~~v~~~~~~l~Rl~n~~~~~~~~~~~~~~~~~~~~l~  715 (878)
T 2v0c_A          636 AVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALE  715 (878)
T ss_dssp             EECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCGGGCC
T ss_pred             HHhhccCCCcccHHHHHHHcCccHHHHHHhccCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcccCC
Confidence            8999999999987654           4423367777 8898876542    122110                      


Q ss_pred             -HhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH------------hHc
Q psy6851         290 -ADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKIL------------TVF  356 (948)
Q Consensus       290 -ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL------------~VL  356 (948)
                       .+..+...+..+...+.++| ++|++..|++.|++|++..|++.+.......+..++..+..||            ..|
T Consensus       716 ~~D~~ll~~l~~~i~~v~~~~-e~~~f~~Ai~~l~~f~~~l~k~~~~~~~~~~l~~~l~~l~~LLaPf~P~~aEElw~~L  794 (878)
T 2v0c_A          716 GKDRELYGKLHETLKKVTEDL-EALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWF  794 (878)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHTTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHcccchHHHHHHHHHc
Confidence             12234456778899999999 9999999999999999999998653211133444444444443            456


Q ss_pred             ccccccccCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q psy6851         357 GCIGDVKNIGFPLGGTGVESTNLEELVLPYLTILSEFRDNIRTE  400 (948)
Q Consensus       357 GL~~~~~~ig~~~~~~~~~~ss~eel~~~~Ld~Lv~~R~~iR~~  400 (948)
                      | ........|+...    .   ..++...++.++++|.++|..
T Consensus       795 g-~~sv~~~~wP~~d----~---~~l~~~~~~~~vqvngkvR~~  830 (878)
T 2v0c_A          795 W-PDSLFEAGWPELD----E---KALEKDVVEVAVQVNGAVAGT  830 (878)
T ss_dssp             C-SSCGGGSCCCCCC----G---GGGC-----------------
T ss_pred             C-CCceeecCCCCCC----H---HHHHHHHHHHHHhhHHHHHHH
Confidence            6 2111112354321    1   111223467788888777765

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*

Probab=98.29  E-value=1.7e-07  Score=114.90  Aligned_cols=60  Identities=10%  Similarity=-0.114  Sum_probs=53.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++.+|.+.|.++|++|||...   .+.|...+|+..+..++.+|.++|+ |+..+.|||+.+++
T Consensus       100 ~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v~w~p~~~  163 (878)
T 2v0c_A          100 WTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ  163 (878)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeEEEeCCCC
Confidence            457899999999999999987   5567788899999999999999999 99999999998775

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*

Probab=97.85  E-value=4e-06  Score=102.86  Aligned_cols=60  Identities=12%  Similarity=-0.099  Sum_probs=45.8

Q ss_pred             cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ++..+.+.|.++|++|||...   .+.|.-.+|...+..++.+|.++|+ |+.++.||||.+++
T Consensus       120 ~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v~wcp~~~  183 (880)
T 4arc_A          120 WTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCPNDQ  183 (880)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC-------
T ss_pred             HHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeEeecCCcC
Confidence            356788999999999999875   3455556799999999999999999 99999999997664

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*

Probab=97.83  E-value=3.7e-06  Score=102.42  Aligned_cols=43  Identities=16%  Similarity=0.112  Sum_probs=39.7

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|+||.|++|+||.+.++++.++++..             .+|+|||||+||+
T Consensus       544 P~dl~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G~KMSKS~GNv  599 (821)
T 1ile_A          544 PADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKGQKMSKSKGNV  599 (821)
T ss_dssp             SBSBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSSCCCTTTTCC
T ss_pred             CcccccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCCCCCCccCCCC
Confidence            789999999999999999999999987653             5999999999999

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A

Probab=97.83  E-value=1.6e-05  Score=97.56  Aligned_cols=43  Identities=16%  Similarity=0.177  Sum_probs=39.4

Q ss_pred             CceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         833 QLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       833 ~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      +.|+|.+|.|++|+||.+.++++.+++|..             .+|+|||||+||+
T Consensus       481 P~d~~v~G~Dii~~W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G~KMSKSlGNv  536 (862)
T 1gax_A          481 PGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMSKSKGNV  536 (862)
T ss_dssp             SBSCEEEEGGGTTTTHHHHHHHHHHHSSSCSBSEEEEECCEECTTSCBCCTTTTCC
T ss_pred             CceEEecCccccccHHHHHHHHHHHhcCCCcccEEEEeeeEEcCCCCCccccCCCC
Confidence            579999999999999999999999887652             5899999999999

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=97.31  E-value=0.00042  Score=81.81  Aligned_cols=46  Identities=11%  Similarity=-0.067  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCee---------ecccccHHHHHHHHhCcccCCC-cc
Q psy6851         628 PKHWEAEFHKDMADLNVLPPTVL---------TRVSEYIPEIVASAQTPKPAAA-KK  674 (948)
Q Consensus       628 ~~~~~~~f~~dm~~L~v~~p~~~---------~rvse~i~~ii~~i~~l~~~g~-Y~  674 (948)
                      ...|++...+||+.|||. ++.-         .+.|++.+...+++++|+++|+ |.
T Consensus       177 ~~~~~~~I~~dL~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~~~~~~L~~~G~aY~  232 (592)
T 3al0_C          177 SREYEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY  232 (592)
T ss_dssp             CHHHHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBSTTCHHHHHHHHHHHHHTTTEEE
T ss_pred             cHHHHHHHHHHHHHcCCC-CCCCCCcCCCCCCeeeeCCHHHHHHHHHHHHHcCCceE
Confidence            468999999999999997 4664         4999999999999999999999 85

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=97.28  E-value=0.00024  Score=83.86  Aligned_cols=43  Identities=19%  Similarity=0.049  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhc--CCCCCCccc---------cccccHHHHHHHHHHHHHHcCCeee
Q psy6851         106 METDKYSQFDE--TVLPPTVLT---------RVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       106 ~~~~~f~~dm~--nV~~P~~~p---------RvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      .+.+.+.+++.  |+. ++--|         +.|++.+..- +++++|+++|+||.
T Consensus       179 ~~~~~I~~dL~wlGl~-~D~~~~~gG~~gp~~qSer~~~y~-~~~~~L~~~G~aY~  232 (592)
T 3al0_C          179 EYEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYR-EYAEKLVEDKRAYY  232 (592)
T ss_dssp             HHHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBSTTCHHHHH-HHHHHHHHTTTEEE
T ss_pred             HHHHHHHHHHHHcCCC-CCCCCCcCCCCCCeeeeCCHHHHH-HHHHHHHHcCCceE
Confidence            34555555555  875 55543         9999999998 79999999999996

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=97.21  E-value=0.00014  Score=83.93  Aligned_cols=75  Identities=21%  Similarity=0.358  Sum_probs=54.1

Q ss_pred             CCCCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------
Q psy6851         789 RSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------  862 (948)
Q Consensus       789 ~~~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------  862 (948)
                      .+..||+|||..             |.|.||+.|. +.-...|.+-.|  .|.|+. +|...-++..+++.-..      
T Consensus       190 ~~~~D~Vl~RsD-------------G~ptY~~a~v-vDD~~~githvi--rG~D~~-~~t~~q~~l~~aLG~~~p~~~H~  252 (481)
T 2o5r_A          190 GAIGDFVIMRSN-------------GLPTYNFACV-VDDMLMEITHVI--RGDDHL-SNTLRQLALYEAFEKAPPVFAHV  252 (481)
T ss_dssp             TSSCBEEEECTT-------------SCBCHHHHHH-HHHHHTTCSEEE--EEGGGH-HHHHHHHHHHHHTTCCCCEEEEE
T ss_pred             ccCCCeEEEccC-------------CCcchhhHHH-HHHHhCCCCeEE--EChhHH-HhHHHHHHHHHHcCCCCCeEEEE
Confidence            455699999973             9999999998 455566776666  788965 55555555566653211      


Q ss_pred             -----CCCccccchhhhH-hhhHH
Q psy6851         863 -----QEGKELSKGLAKK-LKKLQ  880 (948)
Q Consensus       863 -----~~g~kmsKsl~n~-l~~~~  880 (948)
                           .+|+||||+.|++ |..+.
T Consensus       253 plil~~~G~KLSKR~g~~~l~~~~  276 (481)
T 2o5r_A          253 STILGPDGKKLSKRHGATSVEAFR  276 (481)
T ss_dssp             CCEECTTSSBCCGGGSCCBHHHHH
T ss_pred             eeEECCCCCcccCcCCcccHHHHH
Confidence                 5899999999999 55553

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=97.14  E-value=0.00056  Score=78.70  Aligned_cols=46  Identities=15%  Similarity=-0.061  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCee---------ecccccHHHHHHHHhCcccCCC-cc
Q psy6851         628 PKHWEAEFHKDMADLNVLPPTVL---------TRVSEYIPEIVASAQTPKPAAA-KK  674 (948)
Q Consensus       628 ~~~~~~~f~~dm~~L~v~~p~~~---------~rvse~i~~ii~~i~~l~~~g~-Y~  674 (948)
                      ...|++...+||..||+.+ +-.         .+.|++.+...+++++|+++|. |.
T Consensus        49 ~~~~~~~I~~dl~wlGl~w-d~~~~~gG~~gp~~QS~r~~~y~~~~~~L~~~G~aY~  104 (468)
T 1j09_A           49 VPGAEERILAALKWLGLSY-DEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYR  104 (468)
T ss_dssp             CTTHHHHHHHHHHHTTCCC-SBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEE
T ss_pred             ChHHHHHHHHHHHHcCCCC-CCCCCCCCCCCCeeccCCHHHHHHHHHHHHHcCCeEE
Confidence            3479999999999999985 554         6999999999999999999999 85

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=96.92  E-value=0.0017  Score=75.19  Aligned_cols=46  Identities=11%  Similarity=-0.067  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCee---------ecccccHHHHHHHHhCcccCCC-cc
Q psy6851         628 PKHWEAEFHKDMADLNVLPPTVL---------TRVSEYIPEIVASAQTPKPAAA-KK  674 (948)
Q Consensus       628 ~~~~~~~f~~dm~~L~v~~p~~~---------~rvse~i~~ii~~i~~l~~~g~-Y~  674 (948)
                      ...+++...+||+.|||. ++.-         .+.|++.+...+++++|+++|+ |.
T Consensus        73 ~~~~~~~I~~dL~wlGl~-wDe~~~~gG~~gp~~QSer~~~y~~~~~~L~~~G~aY~  128 (488)
T 3afh_A           73 SREYEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAYY  128 (488)
T ss_dssp             CHHHHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             cHHHHHHHHHHHHHcCCC-CCcCCCCCCCCCCeeeeCCHHHHHHHHHHHHHcCCeEe
Confidence            468999999999999998 4664         4999999999999999999999 85

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*

Probab=96.90  E-value=0.00059  Score=84.30  Aligned_cols=44  Identities=20%  Similarity=0.199  Sum_probs=39.6

Q ss_pred             CCceeecCCCCCCCCCChhHHHHHhccCCCC-------------CCCccccchhhhH
Q psy6851         832 PQLDIHTGGVDLKFPHHDNELAQAEGLPTHD-------------QEGKELSKGLAKK  875 (948)
Q Consensus       832 ~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~-------------~~g~kmsKsl~n~  875 (948)
                      -+.|+|.+|.|++|.|+..-++++.+++|..             .+|+|||||+||+
T Consensus       547 ~P~Dl~~~G~D~~r~wf~~~l~~s~~~~g~~Pfk~v~~hG~V~d~~G~KMSKSlGNv  603 (917)
T 1ffy_A          547 FPADMYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNV  603 (917)
T ss_dssp             SSBSEEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTSCCCCSSSSCC
T ss_pred             CCceEEEEEecccccHHHHHHHHHHHhhCCCcccceeEeeeEEcCCCcCcccccCCc
Confidence            4689999999999999999999999987653             3899999999999

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*

Probab=96.67  E-value=0.0009  Score=77.41  Aligned_cols=42  Identities=19%  Similarity=0.050  Sum_probs=33.2

Q ss_pred             HHHHHHHHhc--CCCCCCcc---------ccccccHHHHHHHHHHHHHHcCCeee
Q psy6851         107 ETDKYSQFDE--TVLPPTVL---------TRVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~P~~~---------pRvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      +.+.+.+++.  |+. ++--         -+.|++.+..- +++++|+++|+||.
T Consensus        76 ~~~~I~~dL~wlGl~-wDe~~~~gG~~gp~~QSer~~~y~-~~~~~L~~~G~aY~  128 (488)
T 3afh_A           76 YEQQILESLRWCGLD-WDEGPDIGGDFGPYRQSERLEIYR-EYAEKLVEDKRAYY  128 (488)
T ss_dssp             HHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBGGGCHHHHH-HHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHcCCC-CCcCCCCCCCCCCeeeeCCHHHHH-HHHHHHHHcCCeEe
Confidence            4455555665  885 5554         49999999998 79999999999996

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}

Probab=96.20  E-value=0.0032  Score=72.72  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=23.3

Q ss_pred             ccccccHHHHHHHHHHHHHHcCCeee
Q psy6851         125 TRVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       125 pRvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      .|.|++++.+. +++++|+++|+||.
T Consensus        92 y~QS~r~~~y~-~~a~~L~~~G~aY~  116 (481)
T 2o5r_A           92 YRQSERVEIYR-EHAERLVKEGKAYY  116 (481)
T ss_dssp             CBGGGGHHHHH-HHHHHHHHTTSEEE
T ss_pred             eeeeccHHHHH-HHHHHHHHCCCeeE
Confidence            47999999999 79999999999995

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A

Probab=96.00  E-value=0.0037  Score=71.96  Aligned_cols=42  Identities=21%  Similarity=0.248  Sum_probs=32.6

Q ss_pred             HHHHHHHHhc--CCCCCCcc---------ccccccHHHHHHHHHHHHHHcCCeee
Q psy6851         107 ETDKYSQFDE--TVLPPTVL---------TRVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~P~~~---------pRvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      +.+.+.+++.  |+. |+-.         .+.|++.+... +++++|+++|+||.
T Consensus        52 ~~~~I~~dl~wlGl~-wd~~~~~gG~~gp~~QS~r~~~y~-~~~~~L~~~G~aY~  104 (468)
T 1j09_A           52 AEERILAALKWLGLS-YDEGPDVGGPHGPYRQSERLPLYQ-KYAEELLKRGWAYR  104 (468)
T ss_dssp             HHHHHHHHHHHTTCC-CSBBTTTBCTTCCCBGGGCHHHHH-HHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHHcCCC-CCCCCCCCCCCCCeeccCCHHHHH-HHHHHHHHcCCeEE
Confidence            3445555555  876 4444         59999999999 79999999999995

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=95.82  E-value=0.0015  Score=75.46  Aligned_cols=45  Identities=7%  Similarity=-0.186  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cc
Q psy6851         630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KK  674 (948)
Q Consensus       630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~  674 (948)
                      .|++.+++||+.|||.++....+.|+|++.+.+++++|+++|+ |.
T Consensus        75 ~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~~~~~~Li~~G~aY~  120 (490)
T 4g6z_A           75 EAVDAILEGMAWLGLDYDEGPYYQMQRMDRYREVLAQMQEKGLVYP  120 (490)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHHHHcCCCCCCCCcccccCHHHHHHHHHHHHHCCCEEe
Confidence            5788999999999999877778999999999999999999999 84

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}

Probab=94.62  E-value=0.089  Score=60.52  Aligned_cols=55  Identities=11%  Similarity=0.044  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         630 HWEAEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       630 ~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      .-.+.|.+++++|||.- |.+..=|...+.|-+.|+.|.++|. |+.+|.++++++.
T Consensus       146 ~~l~~~~~~~~~l~V~f-D~~~~Ess~~~~~~~vv~~L~~~g~~~e~dGa~~~~~~~  201 (464)
T 3fnr_A          146 KMLVLIKQNLEQAKIKI-DSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQ  201 (464)
T ss_dssp             HHHHHHHHHHHHTTCCC-SCEEEGGGGSTTHHHHHHHHHHTTCEEEETTEEEECGGG
T ss_pred             HHHHHHHHHHHHhCCCc-eeecCHHHHHHHHHHHHHHHHHCCCEEEeCCeEEEEecc
Confidence            34678999999999986 6554333332355556667999999 9999999988765

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}

Probab=87.54  E-value=0.44  Score=55.25  Aligned_cols=46  Identities=9%  Similarity=-0.037  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeee
Q psy6851         104 FKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYE  150 (948)
Q Consensus       104 ~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYe  150 (948)
                      ...+++.+.++|.  ||.++....+.|+|++.+. +++++|+++|+||.
T Consensus        73 ~~~~~~~i~~dl~wlGl~~d~~~~~qS~r~~~y~-~~~~~Li~~G~aY~  120 (490)
T 4g6z_A           73 SQEAVDAILEGMAWLGLDYDEGPYYQMQRMDRYR-EVLAQMQEKGLVYP  120 (490)
T ss_dssp             CHHHHHHHHHHHHHTTCCCSEEEEEGGGCHHHHH-HHHHHHHHTTSEEE
T ss_pred             cHHHHHHHHHHHHHcCCCCCCCCcccccCHHHHH-HHHHHHHHCCCEEe
Confidence            3456777777777  9987777789999999999 79999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	948
d1li5a2	315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	1e-10
d1li5a2	315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	3e-05
d2nlua1	100	b.34.9.2 (A:1-100) Hepatoma-derived growth factor,	4e-09
d1khca_	137	b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse	5e-09
d2daqa1	97	b.34.9.2 (A:8-104) Histone-lysine N-methyltransfer	9e-07
d2d5ba2	348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	2e-06
d1rqga2	361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	7e-06
d1h3za_	108	b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fi	3e-05
d1pfva2	350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	5e-05

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 46/71 (64%), Positives = 50/71 (70%)

Query: 784 EASEKRSPNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDL 843
              +KR+P DF LWK SK GEP W SPWG GRPGWHIECS M    LG   DIH GG DL
Sbjct: 171 VVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDL 230

Query: 844 KFPHHDNELAQ 854
            FPHH+NE+AQ
Sbjct: 231 MFPHHENEIAQ 241

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQ 487
           +++ FD++ R L  +  Y + Y  NITDIDDKIIKRA +N      + +  I 
Sbjct: 43  TFVAFDVVARYL-RFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIA 94

>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Hepatoma-derived growth factor, HDGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (126), Expect = 4e-09
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 2/60 (3%)

Query: 187 GEVRGYPPWPARI--EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDKYGKVR 244
            +++GYP WPARI     A       KY +FF+GT ET      +LFPY E K+K+GK  
Sbjct: 18  AKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKEKFGKPN 77

>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 137

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: DNA methyltransferase DNMT3B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (128), Expect = 5e-09
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 178 YGDTKTLQEGE-----VRGYPPWPARIEGLAD---ETPNRLKYHIFFYGTRETGICRQDE 229
           Y D K    G+     ++G+  WPA +                 + ++G  +      D+
Sbjct: 3   YQDDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADK 62

Query: 230 LFPYTEFKDKYGKVR 244
           L     F   +    
Sbjct: 63  LVALGLFSQHFNLAT 77

>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Histone-lysine N-methyltransferase NSD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 9e-07
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 187 GEVRGYPPWPARI-------EGLADETPNRLKYHIFFYGTRETGICRQDELFPYTEFKDK 239
            ++  Y  WPA I         +     +   + +FF+G+ +     Q  +FPY E    
Sbjct: 10  VKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDKS 69

Query: 240 YGKVR 244
           + + +
Sbjct: 70  FAEGQ 74

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

 Score = 48.5 bits (114), Expect = 2e-06
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQNYLFEKHVQENEIQTSKILKD 494
           + +  D L R       Y   +     +  + + + A+      +  +    + S   K 
Sbjct: 25  TTVVADFLARWH-RLDGYRTFFLTGTDEHGETVYRAAQAAG---EDPKAFVDRVSGRFKR 80

Query: 495 IGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEG 538
             +++G         T+     +++ +L  V EA      + EG
Sbjct: 81  AWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEG 124

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 46.9 bits (110), Expect = 7e-06
 Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 1/87 (1%)

Query: 791 PNDFALWKKSKAG-EPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHD 849
                L+   +A       +     R G   E       + G    IH  G D    H  
Sbjct: 211 MKGKVLYVWFEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAI 270

Query: 850 NELAQAEGLPTHDQEGKELSKGLAKKL 876
              A       +  E  E    L   +
Sbjct: 271 FWPAFLMAYGKYKDEEVEAEWNLPYDI 297

>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: PWWP domain
domain: Hypothetical protein SPBC215.07c
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 187 GEVRGYPPWPARIEGLADETPNRLK---------YHIFFYGTRETGICRQDELFPYTE 235
            ++ G+P WP+ +   +  T    K         Y + F+  +E      D L P T 
Sbjct: 14  TKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 71

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 1/40 (2%)

Query: 435 SYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRARQN 474
            +I  D+  R       + + +          I+ +A+Q 
Sbjct: 24  EHIQADVWVRYQ-RMRGHEVNFICADDAHGTPIMLKAQQL 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	948
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.96
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.92
d1li5a2	315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.83
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.83
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.77
d1pfva2	350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	99.67
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	99.65
d1rqga2	361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	99.49
d2d5ba2	348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	99.37
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	99.22
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	99.02
d1ivsa4	425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	98.95
d1li5a1	87	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	98.81
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	98.75
d1ffya3	450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	98.43
d1ilea3	452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	98.32
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	97.49
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	97.46
d1irxa2	317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	97.42
d1j09a2	305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	97.25
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	96.93
d1iq0a2	370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	96.15
d1rqga1	210	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	93.85
d1f7ua2	348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	93.07
d1pfva1	162	Methionyl-tRNA synthetase (MetRS) {Escherichia col	91.41
d1h3na3	494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	85.7
d2d5ba1	152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	85.02

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.4e-29  Score=269.92  Aligned_cols=247  Identities=38%  Similarity=0.644  Sum_probs=198.7

Q ss_pred             hhhhhhhhcccccccCCCCC---------Ceeeec----CCcceEEehhHHHHHhhhcCCeEEEecccccchHHHHHHHH
Q psy6851         406 STEILNQCDRLRDEVLPNVG---------VRLEDI----EGKSYITFDILRRILSEYFNYNITYAMNITDIDDKIIKRAR  472 (948)
Q Consensus       406 ~LKLyNSldr~ReeflP~~G---------~~V~D~----hARTyVsfDilrR~l~~y~gy~v~~v~NiTDiDDKIi~ra~  472 (948)
                      +|++|||++|.+++|++.++         ++|.+.    |+|++|..|+|-|+|+ +.||+|+|+.++.|-+.||+.+|+
T Consensus         1 ~~~~~~~~~~~~~~f~~~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr-~~G~~V~~~~~~dd~G~~i~~~a~   79 (315)
T d1li5a2           1 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLR-FLGYKLKYVRNITDIDDKIIKRAN   79 (315)
T ss_dssp             CCEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHH-HHTCEEEEEECBBCCSHHHHHHHH
T ss_pred             CceEEeCCCCceeeeecCCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHH-HcCCcEEEEecccchhHHHHHHHh
Confidence            36899999999999987765         444444    9999999999999998 899999999999999999999998


Q ss_pred             hcchhhhhhhhhhhhhhhhHhhHHHHHHHHHhhhccCCChhhHHHHHHHhHhhHHhhhhcccCCCCccccccchhhhhhh
Q psy6851         473 QNYLFEKHVQENEIQTSKILKDIGEVMGAFESKMKLVTDPDKLTMMKNILSNVQEAKQDISAQPEGTINNIKNVTFQKLL  552 (948)
Q Consensus       473 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (948)
                      +.+.        .  .                                                                
T Consensus        80 ~~~~--------~--~----------------------------------------------------------------   85 (315)
T d1li5a2          80 ENGE--------S--F----------------------------------------------------------------   85 (315)
T ss_dssp             HTTC--------C--H----------------------------------------------------------------
T ss_pred             hhhh--------c--c----------------------------------------------------------------
Confidence            8742        0  0                                                                


Q ss_pred             hhccCCCccccccccCCCCccccccccCCcchhhhhhhhhhhHHHHhhhccCcchhhhhhccCCCccccccccccHHHHH
Q psy6851         553 TAVRDPFSDWLDSLHGSSITDNSIFATLPKHWEAEFHKDMADLNKLLTAVRDPLSDWLDSLHGSSITDNSIFATLPKHWE  632 (948)
Q Consensus       553 ~a~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~ld~~~g~~~~~~~~f~~~~~~~~  632 (948)
                                                                                              .++..++.
T Consensus        86 ------------------------------------------------------------------------~e~~~~~~   93 (315)
T d1li5a2          86 ------------------------------------------------------------------------VAMVDRMI   93 (315)
T ss_dssp             ------------------------------------------------------------------------HHHHHHHH
T ss_pred             ------------------------------------------------------------------------ccccccch
Confidence                                                                                    01345788


Q ss_pred             HHHHHHHhhcCCCCCCeeecccccHHHHHHHHhCcccCCC-c-ccCCcccccCCCCCccccccCCCCCcccccchhhhhh
Q psy6851         633 AEFHKDMADLNVLPPTVLTRVSEYIPEIVASAQTPKPAAA-K-KAESSSDDDSSSEDEKPAVKAPAKPVAHAAEPAAAKK  710 (948)
Q Consensus       633 ~~f~~dm~~L~v~~p~~~~rvse~i~~ii~~i~~l~~~g~-Y-~~~gsvyfdvssede~pa~k~~~k~~~~~~~~~~akk  710 (948)
                      .+|.+|++.+||.+|+.++++++++.+++..+++|..+|+ | ...+.+|++....                        
T Consensus        94 ~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------  149 (315)
T d1li5a2          94 AEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTD------------------------  149 (315)
T ss_dssp             HHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECTTSCEEECGGGC------------------------
T ss_pred             hhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccccceEEeecccc------------------------
Confidence            9999999999999999999999999999999999999999 6 4577788876541                        


Q ss_pred             cCCCCCCCCCCCCCCcCcCCCCcccccccChhhhhhcCCCCCCCCCCCCCcccccCCCCchhhccCCCCCCccccccCCC
Q psy6851         711 AESSSDDDSSSEDEKPAVKTPAKPVAQAAKPAAAKKAESSSDDDSSSEDEKPAVKAPAKPVAQAAKPGDLSSQEASEKRS  790 (948)
Q Consensus       711 ~eSSsd~~ssse~e~~a~~~~~k~~~~a~~~~~~k~~~ssSd~~Sssede~p~~k~~~~~~~~~~~~~~~~~~~~~~K~~  790 (948)
                             .           .++........                               ....+..   .......++
T Consensus       150 -------~-----------~~~~~~~~~~~-------------------------------~~~~~~~---~~~~~~~~~  177 (315)
T d1li5a2         150 -------P-----------TYGVLSRQDLD-------------------------------QLQAGAR---VDVVDDKRN  177 (315)
T ss_dssp             -------T-----------TTTTTTTC--------------------------------------------------CCS
T ss_pred             -------c-----------ccCcccccccc-------------------------------ccccCCc---ccccccccC
Confidence                   1           11111000000                               0000110   011345778


Q ss_pred             CCCcceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC--------
Q psy6851         791 PNDFALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD--------  862 (948)
Q Consensus       791 ~~DfaLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~--------  862 (948)
                      |.|+++||.++.+++.+.+.||.+.|+|+++|..+-...||..+|+|++|.|..+||+...+|...+.++..        
T Consensus       178 ~~~~~~~K~~~~~~~~~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (315)
T d1li5a2         178 PMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHS  257 (315)
T ss_dssp             TTCEEEEEECCTTSCCBCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCB
T ss_pred             hhhhhccccCccCCceeccCCceecccccchhhhHHHHHcCCcccccccccccccccccccchhhhcccccccccEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999876644        


Q ss_pred             ----CCCccccchhhhH
Q psy6851         863 ----QEGKELSKGLAKK  875 (948)
Q Consensus       863 ----~~g~kmsKsl~n~  875 (948)
                          ++|+|||||+|||
T Consensus       258 ~~l~~~G~KMSKs~Gn~  274 (315)
T d1li5a2         258 GMVMVDREKMSKSLGNF  274 (315)
T ss_dssp             CCEEETTBCCCGGGTCC
T ss_pred             EEEecCCcEecCcCCCc
Confidence                7999999999999

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-27  Score=256.58  Aligned_cols=59  Identities=17%  Similarity=0.061  Sum_probs=52.5

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccccHHHHH-HHHhCcccCCC-cccCCcccccCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYIPEIV-ASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i~~ii-~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      ++++|+..|.++|..|||..|..+++.++...+++ .++++|.++|+ |...+++|||..+
T Consensus        69 ~~~~~~~~~~~~~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~  129 (350)
T d1pfva2          69 MIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEK  129 (350)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred             HHHhHHHHHHHHHHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCC
Confidence            56789999999999999999999999988666665 67799999999 9999999999876

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.5e-21  Score=207.43  Aligned_cols=182  Identities=24%  Similarity=0.305  Sum_probs=151.9

Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeee-CCcEEEeeccCCCCC
Q psy6851          90 EAKEAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYES-NGSVYFNVNAFDSQP  166 (948)
Q Consensus        90 ~~~a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes-~GsVYFDv~~f~~~g  166 (948)
                      ...|++.|+++.++..++...|.+++.  +|.+|+.++++++++.+++ +.+++|..+|++|.. .+.|||++...+.++
T Consensus        75 ~~~a~~~~~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  153 (315)
T d1li5a2          75 IKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEII-ELTEQLIAKGHAYVADNGDVMFDVPTDPTYG  153 (315)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHH-HHHHHHHHTTSEEECTTSCEEECGGGCTTTT
T ss_pred             HHHHhhhhhccccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhh-hHHHHhhccCceeccccceEEeecccccccC
Confidence            445666788888888888888887777  9999999999999999999 799999999999975 778999998877654


Q ss_pred             CC----------------CccccCCccccccccccCCCCcCCCCCCCcccCCCCCCCCCCcceeEe-------eccC-cc
Q psy6851         167 NH----------------YYAKLVPEAYGDTKTLQEGEVRGYPPWPARIEGLADETPNRLKYHIFF-------YGTR-ET  222 (948)
Q Consensus       167 ~~----------------~YgKL~P~DFaLWK~ak~gEp~wespWg~~~~~m~~~~~GRPGWHIEc-------LG~~-di  222 (948)
                      ..                ......|.|+.+||.++.+++.+.+.||.          +.|+|+++|       ||.. ++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~~~~~~g~----------~~~~~~~~~~~~w~~~l~~~~~~  223 (315)
T d1li5a2         154 VLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGA----------GRPGWHIECSAMNCKQLGNHFDI  223 (315)
T ss_dssp             TTTTC----------------CCSTTCEEEEEECCTTSCCBCCTTCS----------EEECSSHHHHHHHHHHHCSSEEE
T ss_pred             ccccccccccccCCcccccccccChhhhhccccCccCCceeccCCce----------ecccccchhhhHHHHHcCCcccc
Confidence            20                01122468999999999999999999995          889999997       7777 89


Q ss_pred             ccccccccCCccccc----------------cccccEEEcccchhhcchhHHHHHHH----------HHHHHHHHhh-cC
Q psy6851         223 GICRQDELFPYTEFK----------------DKYGKVRVHLSQKQQSLKLVVIMKEF----------FLNVKDHIRN-LK  275 (948)
Q Consensus       223 h~GG~DL~FPHHEne----------------~h~G~l~i~geKMSKSLGN~vti~ef----------~l~ls~hyR~-l~  275 (948)
                      +++|.|..+||+...                +|+|+|+++|+|||||+||+|+++++          |.+++++|++ ++
T Consensus       224 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ld  303 (315)
T d1li5a2         224 HGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLN  303 (315)
T ss_dssp             EECBGGGTTTHHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEE
T ss_pred             cccccccccccccccchhhhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence            999999999998742                67899999999999999999999985          3347889988 99


Q ss_pred             CChhhhH
Q psy6851         276 FPATTVS  282 (948)
Q Consensus       276 ~s~~~l~  282 (948)
                      |+.+.|.
T Consensus       304 Fs~e~l~  310 (315)
T d1li5a2         304 YSEENLK  310 (315)
T ss_dssp             ECHHHHH
T ss_pred             cCHHHHH
Confidence            9877553

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.83  E-value=1.4e-22  Score=215.60  Aligned_cols=71  Identities=20%  Similarity=-0.129  Sum_probs=63.2

Q ss_pred             CcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC---------------------C
Q psy6851         805 PWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD---------------------Q  863 (948)
Q Consensus       805 p~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~---------------------~  863 (948)
                      +.+.++|+.++||||++|+.|.....|...+||.+|.|+.||||+++.||..+.....                     +
T Consensus       226 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~  305 (361)
T d1rqga2         226 YISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYLTL  305 (361)
T ss_dssp             HHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCEEE
T ss_pred             cccccccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHHHHHHhhccccccccccCCCCCEEEEeeeEEe
Confidence            4456677889999999999999999999999999999999999999999998864211                     6


Q ss_pred             CCccccchhhhH
Q psy6851         864 EGKELSKGLAKK  875 (948)
Q Consensus       864 ~g~kmsKsl~n~  875 (948)
                      +|+|||||+||+
T Consensus       306 ~G~KMSKSlGN~  317 (361)
T d1rqga2         306 EGKKFSTSRNWA  317 (361)
T ss_dssp             TTEECBTTTTBS
T ss_pred             CCEecCCCCCCC
Confidence            899999999999

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1.8e-20  Score=198.30  Aligned_cols=59  Identities=10%  Similarity=-0.027  Sum_probs=48.3

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeecccccH-HHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVSEYI-PEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i-~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      ++..|..+|.++++.|||.+++.+...+.+. ..+..++++++++|+ |.....++++.++
T Consensus        70 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  130 (348)
T d2d5ba2          70 FVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSC  130 (348)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred             hhhhHHHHHHHHHHhcCccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccc
Confidence            4568889999999999999988777777654 555567789999999 9888888888776

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=3.8e-18  Score=181.93  Aligned_cols=69  Identities=13%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNA  161 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~  161 (948)
                      |.+.|+++.++++.++..|.++|.  ||..|..++++++++.+++..++++|.++|++|+.+++||||+..
T Consensus        59 a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~t~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~d~~~  129 (350)
T d1pfva2          59 AQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEK  129 (350)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred             HHHcCCCHHHHHHhHHHHHHHHHHHcCCCcccCCCcCCcccchHHHHHHHHHhhccceeeccceEEEeCCC
Confidence            334567777777777778887777  999999999999988888856889999999999999999999754

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=1.3e-17  Score=182.24  Aligned_cols=60  Identities=8%  Similarity=-0.062  Sum_probs=49.9

Q ss_pred             cHHHHHHHHHHHHhhcCCCCC---CeeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPP---TVLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p---~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      ....|.+.|.+++++||+...   ...+...+|+..+..++++|.++|+ |.....|+++...+
T Consensus       117 ~~~~~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~~~~~~l~~~G~iy~~~~~~~~c~~~~  180 (425)
T d1ivsa4         117 WKEESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPRCE  180 (425)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHTTSSEEEECCEEEEETTTT
T ss_pred             HHHHHHHHHHHHHHHhCCccCcchhhcccchhhhhhhHHHHhhhhccCcccccceeeccccccc
Confidence            456888999999999999753   3345555799999999999999999 99988899987764

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.49  E-value=1.8e-15  Score=160.27  Aligned_cols=171  Identities=12%  Similarity=0.065  Sum_probs=112.1

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN---  167 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~---  167 (948)
                      |.+.|+++.+++..+...+.+++.  ++..++.....++...+++..+...+.++|..|.....|+++...-.-...   
T Consensus        60 A~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (361)
T d1rqga2          60 ALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQAYCEHDKMFLPDRFA  139 (361)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEBTTTTBCCCGGGT
T ss_pred             HHHcCCCHHHHHHHHHHhhcccccccccccccccccccchhhhhhhhhhhhccccCceeeeeeeeecccccceecccccc
Confidence            334577777777777778877766  888888888888888887744666899999999988788887653210000   


Q ss_pred             ------------CCccccCCc--------cccccc--------c-ccCCC----CcCCCCCCCcccCCCCC---------
Q psy6851         168 ------------HYYAKLVPE--------AYGDTK--------T-LQEGE----VRGYPPWPARIEGLADE---------  205 (948)
Q Consensus       168 ------------~~YgKL~P~--------DFaLWK--------~-ak~gE----p~wespWg~~~~~m~~~---------  205 (948)
                                  +-|-++...        +-..|.        . ...+-    ..+...||.+++.+...         
T Consensus       140 ~~g~~~~~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~wg~~~p~~~~~~~~~~~~~~  219 (361)
T d1rqga2         140 ICGRPISFRDSAHYYIKMQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVW  219 (361)
T ss_dssp             TTCCBCEEEEEEEEEECGGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHH
T ss_pred             cCCCcccccccceEEEecchhhhhhhhcccccccccchhhhhhhccccccccccccccccccccCccccccCCCeEEEee
Confidence                        000011100        000000        0 00111    13455666655544321         


Q ss_pred             -------------CCCCCcceeEe-------eccC-ccccccccccCCccccc-------------------------cc
Q psy6851         206 -------------TPNRLKYHIFF-------YGTR-ETGICRQDELFPYTEFK-------------------------DK  239 (948)
Q Consensus       206 -------------~~GRPGWHIEc-------LG~~-dih~GG~DL~FPHHEne-------------------------~h  239 (948)
                                   ..++||||++|       .|.. ++|.+|.|+.||||+++                         .+
T Consensus       220 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~p~~~~~  299 (361)
T d1rqga2         220 FEAPIGYISITIEHFKRIGKPNEWKKYWLNIDGQTRVIHFIGKDNIPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPA  299 (361)
T ss_dssp             HHGGGHHHHHHHHHHHHTTCTTTTHHHHBCSSCCEEEEEEEEGGGHHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCE
T ss_pred             cccccccccccccCcccCCchhHHHHhhhhccCCcceEEeccccccccchhhHHHHHHHhhccccccccccCCCCCEEEE
Confidence                         13589999998       3444 78999999999999963                         24


Q ss_pred             cccEEEcccchhhcchhHHHHHHH
Q psy6851         240 YGKVRVHLSQKQQSLKLVVIMKEF  263 (948)
Q Consensus       240 ~G~l~i~geKMSKSLGN~vti~ef  263 (948)
                      +|+|.++|+|||||+||+|++.++
T Consensus       300 ~g~l~~~G~KMSKSlGN~I~~~d~  323 (361)
T d1rqga2         300 NEYLTLEGKKFSTSRNWAIWVHEF  323 (361)
T ss_dssp             ECCEEETTEECBTTTTBSCBHHHH
T ss_pred             eeeEEeCCEecCCCCCCCCCHHHH
Confidence            689999999999999999998875

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.37  E-value=1.3e-13  Score=145.25  Aligned_cols=179  Identities=11%  Similarity=0.023  Sum_probs=113.7

Q ss_pred             HHhcCCChHHHHHHHHHHHHHHhc--CCCCCCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCCCCC---
Q psy6851          93 EAQKKIPPSEMFKMETDKYSQFDE--TVLPPTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNAFDSQPN---  167 (948)
Q Consensus        93 a~e~g~~~~el~~~~~~~f~~dm~--nV~~P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f~~~g~---  167 (948)
                      |++.|+++.+++..+...|.+++.  ||.++..++..+.++..++..++++++++|++|.....|||+...-.-+..   
T Consensus        60 a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  139 (348)
T d2d5ba2          60 AQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGLYCVSCERFYTEKEL  139 (348)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCTTTS
T ss_pred             HHHcCCCHHHhhhhHHHHHHHHHHhcCccccceeecccchhhHHHHHHHHHHHhhCccccccccccccccccceeccccc
Confidence            344566666666667777777766  998888888888877777645788999999999988889998763321110   


Q ss_pred             -CCc----cccC----C----ccccccc--------------------------------cccCCCCcCCCCCCCcccCC
Q psy6851         168 -HYY----AKLV----P----EAYGDTK--------------------------------TLQEGEVRGYPPWPARIEGL  202 (948)
Q Consensus       168 -~~Y----gKL~----P----~DFaLWK--------------------------------~ak~gEp~wespWg~~~~~m  202 (948)
                       ..+    |...    .    .+...|+                                ......+.|..+|+.     
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~-----  214 (348)
T d2d5ba2         140 VEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISRPKSRVPWGI-----  214 (348)
T ss_dssp             BTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEEETTTCCSSC-----
T ss_pred             cccccccCCCceEEecccccccchHhhhhhHHHhhhccccccccccccccccccccccccccccccccccCCCCc-----
Confidence             000    0000    0    0000000                                011122345666664     


Q ss_pred             CCCCCCCCcceeEe--------------ecc-----------CccccccccccCCccccc----------------cccc
Q psy6851         203 ADETPNRLKYHIFF--------------YGT-----------RETGICRQDELFPYTEFK----------------DKYG  241 (948)
Q Consensus       203 ~~~~~GRPGWHIEc--------------LG~-----------~dih~GG~DL~FPHHEne----------------~h~G  241 (948)
                           ++|+|+.++              +|.           .+++.+|.|+.++|+...                +|.+
T Consensus       215 -----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  289 (348)
T d2d5ba2         215 -----PLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGF  289 (348)
T ss_dssp             -----EETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECC
T ss_pred             -----ccccCCcccccchhccchhhhhhhcCCchhhhccccchheeeehhhccchhhhhhhhhccccccCCCCEEEeCce
Confidence                 678886654              110           135667889988888753                3445


Q ss_pred             cEEEcccchhhcchhHHHHHHH-----------HHHHHHHHhh-cCCChhhh
Q psy6851         242 KVRVHLSQKQQSLKLVVIMKEF-----------FLNVKDHIRN-LKFPATTV  281 (948)
Q Consensus       242 ~l~i~geKMSKSLGN~vti~ef-----------~l~ls~hyR~-l~~s~~~l  281 (948)
                      ++.++|+|||||+||+|++.++           |+....+|++ ++|+.+.+
T Consensus       290 ~l~~~G~KMSKS~Gn~i~~~ell~~~g~D~lR~~l~~~~p~~~d~dFs~~~~  341 (348)
T d2d5ba2         290 LLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEAL  341 (348)
T ss_dssp             EECTTSSCCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHH
T ss_pred             EEcccCCCCcCCCCcccCHHHHHHHCCcHHHHHHHHhcCCCCCCCCCCHHHH
Confidence            6678899999999999998875           3322358888 88987654

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.22  E-value=9.4e-14  Score=152.33  Aligned_cols=60  Identities=10%  Similarity=-0.057  Sum_probs=51.0

Q ss_pred             cHHHHHHHHHHHHhhcCCCCCCeeeccc---ccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         627 LPKHWEAEFHKDMADLNVLPPTVLTRVS---EYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       627 ~~~~~~~~f~~dm~~L~v~~p~~~~rvs---e~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      +...|+..|.+++..||+..+...++.|   +|+..+..++.+|.++|+ |.....+|++...+
T Consensus       122 ~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~~~f~~l~~~G~iy~~~~~~~~~~~~~  185 (452)
T d1ilea3         122 SVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIWWSLKNLFDRGLLYRDHKVVPYCPRCG  185 (452)
T ss_dssp             HTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHHHHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred             HHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHHHHHHHHHhcCCcccccccchhhcccc
Confidence            4457888999999999998876565555   699999999999999999 99988999998774

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.02  E-value=4.6e-11  Score=132.68  Aligned_cols=60  Identities=17%  Similarity=-0.041  Sum_probs=49.6

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCCee---ecccccHHHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPPTVL---TRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p~~~---~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      +++..+...+..++.+||+...--.   |-.-+|...+..++.+|.++|+ |.....|++|...
T Consensus       126 ~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~~~f~~l~~~G~iy~~~~~v~~~p~~  189 (450)
T d1ffya3         126 EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQIRIFGEMADKGLIYKGKKPVYWSPSS  189 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTT
T ss_pred             hhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHcCCeecccccccccccc
Confidence            4567889999999999999764333   3333688889999999999999 9998899999877

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Valyl-tRNA synthetase (ValRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.95  E-value=2.5e-10  Score=123.99  Aligned_cols=54  Identities=11%  Similarity=0.042  Sum_probs=40.3

Q ss_pred             HHHHHHHHhc--CCCC---CCccccccccHHHHHHHHHHHHHHcCCeeeeCCcEEEeecc
Q psy6851         107 ETDKYSQFDE--TVLP---PTVLTRVSEYIPEIVASYIEKIIANGLAYESNGSVYFNVNA  161 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~---P~~~pRvTe~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~  161 (948)
                      +.+.+..++.  |+..   ..+.|...+|+..+. +++++|.++|++|.....|+|+..-
T Consensus       121 ~~~~~~~~~~~lg~~~d~~~~~~t~~~~~~~~~~-~~~~~l~~~G~iy~~~~~~~~c~~~  179 (425)
T d1ivsa4         121 SGGTILKQLKRLGASADWSREAFTMDEKRSRAVR-YAFSRYYHEGLAYRAPRLVNWCPRC  179 (425)
T ss_dssp             HHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHH-HHHHHHHTTSSEEEECCEEEEETTT
T ss_pred             HHHHHHHHHHHhCCccCcchhhcccchhhhhhhH-HHHhhhhccCcccccceeecccccc
Confidence            3344443333  6643   344577778999999 7999999999999999999998754

>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=3.1e-09  Score=93.44  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHhHccccccc
Q psy6851         300 QTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGTPNQLLLRDIGAYVTKILTVFGCIGDV  362 (948)
Q Consensus       300 el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~~~~~lL~~i~~~V~~mL~VLGL~~~~  362 (948)
                      .+.++|.+||+||||||.||++||++++.+|++++.+  ......++..++.|.+||||....
T Consensus        22 ~~~~~F~~Am~DDlNTp~Ala~lfel~k~~N~~~~~~--~~~~~~~~~~l~~~~~vLGll~~~   82 (87)
T d1li5a1          22 AFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAED--MAAANAMASHLRKLSAVLGLLEQE   82 (87)
T ss_dssp             HHHHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHTTTTCSCSC
T ss_pred             HHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHhHcCCCCCC
Confidence            4678899999999999999999999999999988653  234556677889999999997543

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=5.8e-11  Score=120.13  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             cceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccC--CCC---------
Q psy6851         794 FALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLP--THD---------  862 (948)
Q Consensus       794 faLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~--~~~---------  862 (948)
                      ...|.......+.+.-+||.+++.|...|.+.   +++..+++|..|.|++++|+.+..+|...+.  +..         
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  268 (317)
T d1irxa2         192 KVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMR---WSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEF  268 (317)
T ss_dssp             CEEECCSSSCCCEECTTSSCEEECHHHHHHHH---HHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECC
T ss_pred             cceeeecccccccccccccCCcccccccchhh---hccCceeEEEecceecccchhhhHhhhhhhhhcCCCCcEEEEEEE
Confidence            34444444455677888999999999999865   4566889999999999999999998865542  111         


Q ss_pred             --CC--CccccchhhhH
Q psy6851         863 --QE--GKELSKGLAKK  875 (948)
Q Consensus       863 --~~--g~kmsKsl~n~  875 (948)
                        ++  |.|||||+||+
T Consensus       269 l~l~ge~~KMSkrkGn~  285 (317)
T d1irxa2         269 VGIKGQKGKMSGSKGNV  285 (317)
T ss_dssp             EEESCC---------CC
T ss_pred             EEECCccccccCCCCcc
Confidence              54  45999999999

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.43  E-value=5.6e-08  Score=107.50  Aligned_cols=58  Identities=16%  Similarity=0.181  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHhc--CCCCCCcccccc---ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeec
Q psy6851         102 EMFKMETDKYSQFDE--TVLPPTVLTRVS---EYIPEIVASYIEKIIANGLAYESNGSVYFNVN  160 (948)
Q Consensus       102 el~~~~~~~f~~dm~--nV~~P~~~pRvT---e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~  160 (948)
                      ++...++..+...+.  |+..-.-.+..|   +|...+. .++.+|.++|++|....-|||++.
T Consensus       126 ~~~~~~~~~~~~~~~~lg~~~D~~~~~~T~~~~~~~~v~-~~f~~l~~~G~iy~~~~~v~~~p~  188 (450)
T d1ffya3         126 EFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAAQI-RIFGEMADKGLIYKGKKPVYWSPS  188 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCSCTTSCEETTSHHHHHHHH-HHHHHHHHTTCEEEEEEEEEEETT
T ss_pred             hhhhhhhhhHHHHHHHHhhhcccccccccccHHHHHHHH-HHHHHHHHcCCeeccccccccccc
Confidence            334445555554444  665543333344   7888888 799999999999998889999974

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Isoleucyl-tRNA synthetase (IleRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.32  E-value=4.3e-08  Score=106.73  Aligned_cols=60  Identities=17%  Similarity=0.181  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHhc--CCCCCCcccccc---ccHHHHHHHHHHHHHHcCCeeeeCCcEEEeeccC
Q psy6851         102 EMFKMETDKYSQFDE--TVLPPTVLTRVS---EYIPEIVASYIEKIIANGLAYESNGSVYFNVNAF  162 (948)
Q Consensus       102 el~~~~~~~f~~dm~--nV~~P~~~pRvT---e~IpeII~~~I~~LI~~G~AYes~GsVYFDv~~f  162 (948)
                      ++...+...+..++.  |+......++.|   +|+..++ +++.+|.++|++|.....|||+...-
T Consensus       121 ~~~~~~~~~~~~~~~~l~~~~d~~~~~~T~~~~~~~~~~-~~f~~l~~~G~iy~~~~~~~~~~~~~  185 (452)
T d1ilea3         121 ESVFTYEKEWEAFTERIAYWVDLEDAYATLEPTYIESIW-WSLKNLFDRGLLYRDHKVVPYCPRCG  185 (452)
T ss_dssp             HHTTTTHHHHTTHHHHTTCCCEEEEEEETTSHHHHHHHH-HHHHHHHHTTCEEEECCEEEEETTTT
T ss_pred             hHHhhhhhhHHHHHhhhccccccchhhhcCChHHHHHHH-HHHHHHHhcCCcccccccchhhcccc
Confidence            333344444544443  776665555566   8999999 79999999999999999999987543

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.49  E-value=4.1e-05  Score=82.35  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=62.7

Q ss_pred             ceeeccCCCCCcccCCCCCCCCchhHHHHHHHHhhcCCCceeecCCCCCCCCCChhHHHHHhccCCCC------------
Q psy6851         795 ALWKKSKAGEPWWSSPWGEGRPGWHIECSVMASAVLGPQLDIHTGGVDLKFPHHDNELAQAEGLPTHD------------  862 (948)
Q Consensus       795 aLwk~~k~~ep~w~spwg~GrPgWHieCs~m~~~~lg~~~dih~GG~Dl~FPHH~ne~aq~e~~~~~~------------  862 (948)
                      .+||......+.|..+++...+++.|.  ++-.......+|.+-..+|....||.+.+.|+....|.+            
T Consensus       213 ~~~K~~~~~~~~~~~~~~~~~~~i~i~--~~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g  290 (370)
T d1iq0a2         213 QFWKMGILEGLRFRPYENPYYPGLRTS--APEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYE  290 (370)
T ss_dssp             HHHHTTSSCCCEEEECCCSSCTTCEEE--EEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEEC
T ss_pred             HhhhcccccccceeccccCccceeEee--ccccccchhhhhHHHHHHhccchHHHHHHHHHHHHhCCCchhhceeeEEEE
Confidence            477777777788999999899986554  455566677899999999999999999999998776643            


Q ss_pred             ---CCCccccchhhhH--hhhH
Q psy6851         863 ---QEGKELSKGLAKK--LKKL  879 (948)
Q Consensus       863 ---~~g~kmsKsl~n~--l~~~  879 (948)
                         .+|+||||..||+  |..+
T Consensus       291 ~v~~~g~kMStR~G~~v~l~dl  312 (370)
T d1iq0a2         291 TVLLEGRQMSGRKGLAVSVDEV  312 (370)
T ss_dssp             CEEETTBCSCC----CCBHHHH
T ss_pred             EEecCCccccccCCCeeEHHHH
Confidence               5789999999999  4444

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=9.9e-06  Score=85.22  Aligned_cols=48  Identities=19%  Similarity=-0.001  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHhhcCCCC--------CCeeecccccHHHHHHHHhCcccCCC-cccC
Q psy6851         629 KHWEAEFHKDMADLNVLP--------PTVLTRVSEYIPEIVASAQTPKPAAA-KKAE  676 (948)
Q Consensus       629 ~~~~~~f~~dm~~L~v~~--------p~~~~rvse~i~~ii~~i~~l~~~g~-Y~~~  676 (948)
                      ..|++..++|++.||+..        |..+.+.|++++.+.+++++|+++|+ |.-.
T Consensus        50 ~~~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~~~~~~Li~~g~aY~C~  106 (305)
T d1j09a2          50 PGAEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQKYAEELLKRGWAYRAF  106 (305)
T ss_dssp             TTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEEC
T ss_pred             hHHHHHHHHHHHHHhcCcccCCcCCCCCcceeeecchhHHHHHHHHHHHcCCeeecc
Confidence            369999999999999985        44577999999999999999999999 8643

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Class I lysyl-tRNA synthetase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.42  E-value=7.2e-06  Score=81.97  Aligned_cols=58  Identities=12%  Similarity=0.203  Sum_probs=39.2

Q ss_pred             CCCCcceeEe----eccC-ccccccccccCCccccc-----------------cccccEEEccc--chhhcchhHHHHHH
Q psy6851         207 PNRLKYHIFF----YGTR-ETGICRQDELFPYTEFK-----------------DKYGKVRVHLS--QKQQSLKLVVIMKE  262 (948)
Q Consensus       207 ~GRPGWHIEc----LG~~-dih~GG~DL~FPHHEne-----------------~h~G~l~i~ge--KMSKSLGN~vti~e  262 (948)
                      .+++.|...|    .+.. +.|+.|.|++++|+.+.                 .|+|+|.++|+  |||||+||+|++.+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~l~ge~~KMSkrkGn~I~~~d  290 (317)
T d1irxa2         211 NVKLRWRVDWPMRWSHFGVDFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSD  290 (317)
T ss_dssp             CEEECHHHHHHHHHHHSCCCBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEESCC---------CCCCHHH
T ss_pred             CCcccccccchhhhccCceeEEEecceecccchhhhHhhhhhhhhcCCCCcEEEEEEEEEECCccccccCCCCccccHHH
Confidence            4777777765    3333 67889999999999753                 36788999876  99999999999998


Q ss_pred             HH
Q psy6851         263 FF  264 (948)
Q Consensus       263 f~  264 (948)
                      ++
T Consensus       291 ll  292 (317)
T d1irxa2         291 LY  292 (317)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Glutamyl-tRNA synthetase (GluRS)
species: Thermus thermophilus [TaxId: 274]

Probab=97.25  E-value=9e-06  Score=85.56  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=34.9

Q ss_pred             HHHHHHHHhc--CCCC--------CCccccccccHHHHHHHHHHHHHHcCCeeee
Q psy6851         107 ETDKYSQFDE--TVLP--------PTVLTRVSEYIPEIVASYIEKIIANGLAYES  151 (948)
Q Consensus       107 ~~~~f~~dm~--nV~~--------P~~~pRvTe~IpeII~~~I~~LI~~G~AYes  151 (948)
                      +.+++.++++  |+..        |....+.|++++.++ +++++|+++|+||.-
T Consensus        52 ~~~~I~~dL~wLgi~wD~~p~~~~~~~~~~qS~r~~~y~-~~~~~Li~~g~aY~C  105 (305)
T d1j09a2          52 AEERILAALKWLGLSYDEGPDVGGPHGPYRQSERLPLYQ-KYAEELLKRGWAYRA  105 (305)
T ss_dssp             HHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGCHHHHH-HHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHHhcCcccCCcCCCCCcceeeecchhHHH-HHHHHHHHcCCeeec
Confidence            4455555665  7653        445779999999999 799999999999974

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0011  Score=70.37  Aligned_cols=62  Identities=13%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             cccccHHHHHHHHHHHHhhcCCCCCCeeecccccH-HHHHHHHhCcccCCC-cccCCcccccCCC
Q psy6851         623 IFATLPKHWEAEFHKDMADLNVLPPTVLTRVSEYI-PEIVASAQTPKPAAA-KKAESSSDDDSSS  685 (948)
Q Consensus       623 ~f~~~~~~~~~~f~~dm~~L~v~~p~~~~rvse~i-~~ii~~i~~l~~~g~-Y~~~gsvyfdvss  685 (948)
                      ++..+.......|.+++..|||.- +.+..-|++. +.+...++.|.++|+ |..+|.++|+.+.
T Consensus       130 ~~~~~~~~~l~~~~~~~~~l~i~f-D~~~~Es~~~~~~~~~v~~~L~~~~~~~~~~ga~~~~~~~  193 (348)
T d1f7ua2         130 IWKRFREFSIEKYIDTYARLNIKY-DVYSGESQVSKESMLKAIDLFKEKGLTHEDKGAVLIDLTK  193 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCC-SEEEEGGGCCHHHHHHHHHHHHHTTCEEEETTEEEEEGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh-hhhhhcccccccchHHHHHHHHhhccccccCCcccccchh
Confidence            445667788889999999999975 7776666644 456666777888899 9888888887544

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0036  Score=66.74  Aligned_cols=119  Identities=12%  Similarity=-0.032  Sum_probs=71.4

Q ss_pred             HHHHHHHHcCCeeeeC-----CcEEEeeccCCCCCCCCccccCC---------cccc--ccccccCCCCcCCCCCCCccc
Q psy6851         137 SYIEKIIANGLAYESN-----GSVYFNVNAFDSQPNHYYAKLVP---------EAYG--DTKTLQEGEVRGYPPWPARIE  200 (948)
Q Consensus       137 ~~I~~LI~~G~AYes~-----GsVYFDv~~f~~~g~~~YgKL~P---------~DFa--LWK~ak~gEp~wespWg~~~~  200 (948)
                      ..|..|.++|..|..+     |.+++|...+........-=|..         .|.|  +||......+.+.++|+.   
T Consensus       155 ~~i~~l~~~~~~~~~~~~~~~ga~~~d~~~~~~~~~~~~~vl~ksDG~~tY~t~DiAy~~~K~~~~~~~~~~~~~~~---  231 (370)
T d1iq0a2         155 KALALLEQSPHVFRPREGKYAGALVMDASPVIPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENP---  231 (370)
T ss_dssp             HHHHHHTTSTTEECCSSSTTTTCEEEECTTTSCSCSCCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCS---
T ss_pred             hhHhhhhhccceeeccccccceEEEecCccccccccCcceeeEeccCCceEeccHHHHHhhhcccccccceeccccC---
Confidence            4567888999999753     89999988774311100000000         1322  455444444455555553   


Q ss_pred             CCCCCCCCCCcceeEee---cc--C-ccccccccccCCccccc-------------------cccccEEEcccchhhcch
Q psy6851         201 GLADETPNRLKYHIFFY---GT--R-ETGICRQDELFPYTEFK-------------------DKYGKVRVHLSQKQQSLK  255 (948)
Q Consensus       201 ~m~~~~~GRPGWHIEcL---G~--~-dih~GG~DL~FPHHEne-------------------~h~G~l~i~geKMSKSLG  255 (948)
                             ..+++.|-+.   |.  . |..+...|....||...                   +.+|+|...|.|||+..|
T Consensus       232 -------~~~~i~i~~~d~~~~~~~~d~~iyVvd~~Q~~h~~~v~~~~~~~g~~~~~~~~~hv~~g~v~~~g~kMStR~G  304 (370)
T d1iq0a2         232 -------YYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKG  304 (370)
T ss_dssp             -------SCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEEETTBCSCC---
T ss_pred             -------ccceeEeeccccccchhhhhHHHHHHhccchHHHHHHHHHHHHhCCCchhhceeeEEEEEEecCCccccccCC
Confidence                   5677666541   11  2 44555678888898632                   235888899999999999


Q ss_pred             hHHHHHHHHH
Q psy6851         256 LVVIMKEFFL  265 (948)
Q Consensus       256 N~vti~ef~l  265 (948)
                      |+|++.+++.
T Consensus       305 ~~v~l~dll~  314 (370)
T d1iq0a2         305 LAVSVDEVLE  314 (370)
T ss_dssp             -CCBHHHHHH
T ss_pred             CeeEHHHHHH
Confidence            9999999875

>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Pyrococcus abyssi [TaxId: 29292]

Probab=93.85  E-value=0.13  Score=49.82  Aligned_cols=47  Identities=19%  Similarity=0.140  Sum_probs=40.9

Q ss_pred             HHhHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         289 QADLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       289 ~ad~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                      ..+..+...+..+...+..+| +++.+..|+..|+++++.+|.|++..
T Consensus        31 ~~d~~l~~~~~~~~~~~~~~~-e~~~~~~al~~i~~l~~~~N~yi~~~   77 (210)
T d1rqga1          31 ELDREALEEIEKAFKEVGELI-MNYRFKDALKRVMSLASFGNRYFDHK   77 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666677788899999999 88999999999999999999999864

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Arginyl-tRNA synthetase (ArgRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.07  E-value=0.084  Score=55.36  Aligned_cols=58  Identities=19%  Similarity=0.330  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHhc--CCCCCCccccccccH-HHHHHHHHHHHHHcCCeeeeCCcEEEeeccCCC
Q psy6851         105 KMETDKYSQFDE--TVLPPTVLTRVSEYI-PEIVASYIEKIIANGLAYESNGSVYFNVNAFDS  164 (948)
Q Consensus       105 ~~~~~~f~~dm~--nV~~P~~~pRvTe~I-peII~~~I~~LI~~G~AYes~GsVYFDv~~f~~  164 (948)
                      ......|.+.+.  ||. .+.+-.=+++. +.+. ..++.|.++|++|+.+|-++|+...|.+
T Consensus       136 ~~~l~~~~~~~~~l~i~-fD~~~~Es~~~~~~~~-~v~~~L~~~~~~~~~~ga~~~~~~~~g~  196 (348)
T d1f7ua2         136 EFSIEKYIDTYARLNIK-YDVYSGESQVSKESML-KAIDLFKEKGLTHEDKGAVLIDLTKFNK  196 (348)
T ss_dssp             HHHHHHHHHHHHHTTCC-CSEEEEGGGCCHHHHH-HHHHHHHHTTCEEEETTEEEEEGGGTCT
T ss_pred             HHHHHHHHHHHHHHhhh-hhhhhhcccccccchH-HHHHHHHhhccccccCCcccccchhhcc
Confidence            334445554444  774 46555555544 4455 5778899999999999999999987753

>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.15  Score=47.84  Aligned_cols=44  Identities=18%  Similarity=0.228  Sum_probs=38.2

Q ss_pred             hHHHhHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcC
Q psy6851         291 DLELSTRFIQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRG  335 (948)
Q Consensus       291 d~eL~~~l~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~  335 (948)
                      +.++...+..+...+.++| +++++++|+..|+++++.+|+|++.
T Consensus        26 d~~l~~~~~~~~~~~~~~~-~~~~~~~al~~i~~~~~~~Nkyi~~   69 (162)
T d1pfva1          26 DPQLYKTFTDAAEVIGEAW-ESREFGKAVREIMALADLANRYVDE   69 (162)
T ss_dssp             CHHHHHHHHHTHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666677788899999 8999999999999999999999974

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Leucyl-tRNA synthetase (LeuRS)
species: Thermus thermophilus [TaxId: 274]

Probab=85.70  E-value=0.16  Score=54.38  Aligned_cols=61  Identities=10%  Similarity=-0.131  Sum_probs=48.3

Q ss_pred             ccHHHHHHHHHHHHhhcCCCCCC---eeecccccHHHHHHHHhCcccCCC-cccCCcccccCCCC
Q psy6851         626 TLPKHWEAEFHKDMADLNVLPPT---VLTRVSEYIPEIVASAQTPKPAAA-KKAESSSDDDSSSE  686 (948)
Q Consensus       626 ~~~~~~~~~f~~dm~~L~v~~p~---~~~rvse~i~~ii~~i~~l~~~g~-Y~~~gsvyfdvsse  686 (948)
                      +++..|...+.+.+++||+.---   ..|--.+|...+..+..+|.++|+ |....-|+++..++
T Consensus        99 ~~~~~~~~~~~~~~~~~g~~~d~~~~~~T~d~~~~~~~~~~f~~l~~~g~iy~~~~~~~~~~~~~  163 (494)
T d1h3na3          99 DWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQ  163 (494)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTTT
T ss_pred             HHHHHHHHHhHHHHHhcCcccCCCCceecCCccccchHHHHHHHhhhCCcEEeeeEEEEeecCcc
Confidence            35678899999999999997631   122223588899999999999999 99988899998764

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
superfamily: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
family: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
domain: Methionyl-tRNA synthetase (MetRS)
species: Thermus thermophilus [TaxId: 274]

Probab=85.02  E-value=0.41  Score=44.10  Aligned_cols=37  Identities=11%  Similarity=0.222  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcCC
Q psy6851         299 IQTKNNVHAALCDNMDTRSALDSIRDCISQVNIYLRGT  336 (948)
Q Consensus       299 ~el~e~F~aAL~DDFNTP~ALaaLfeLVraiN~yLd~~  336 (948)
                      .++...+..+| +++.+..|+..++++++.+|+|++..
T Consensus        37 ~~~~~~~~~~~-e~~~~~~al~~i~~~~~~~N~yi~~~   73 (152)
T d2d5ba1          37 TGLAGRLRPLV-RELKFHVALEEAMAYVKALNRYINEK   73 (152)
T ss_dssp             GGHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788899 79999999999999999999999753