Psyllid ID: psy6853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
MPWHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRISWKPR
Secondary Structure (PSIPRED)
ccHHHHHHHHHcHHHEEEccccccccccHHcccccccccccccccccccccccEEEEccccccccccHHccccccccEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccEEEEcccccccccccEEEEccHHHcccccccHHcccHcccEEEEEcHHHccccccHHHcccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mpwhhtlsLLRGCImivypmnlpthdpirlefenredltgtqaskeviepSMGALWFAGKAMHRDKFVRdflgknekCKAIVKISkigsgapsrepvmneEEKKQLMLHYYRKQEEMKllesdtdeafrnsdwadnTSLRKNLlglnriswkpr
Flexible Loop (DISEMBL)
MPWHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTgtqaskeviePSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKiskigsgapsrepvmneEEKKQLMLHYYRKQEEMKLLESDTDeafrnsdwadntslrknllglnriswkpr
Low Complexity Region (SEG)
MPWHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRISWKPR
Disordered region (IsUnstruct)
**WHHTLSLLRGCIMIVYPMNLPTHDPIRLEFE*************VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI**********************Y********************************LLGL********
Disordered Region (DISOPRED)
**WHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENRE**********VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV******************EEKKQLMLHYYRKQEE**********AFRNSDWA***SLRKNLLGLN*ISWKP*
Disordered Region (DISEMBL)
MPWHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRISWKPR
Disordered Region (DISPRO)
MPWHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRISW***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPWHHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRISWKPR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
Q6DRC3	290	Uncharacterized protein C	yes	N/A	0.967	0.513	0.563	3e-46
P57076	290	Uncharacterized protein C	yes	N/A	0.967	0.513	0.550	6e-46
Q9VZH1	291	Uncharacterized protein C	yes	N/A	0.967	0.512	0.523	2e-41

>sp|Q6DRC3|CU059_DANRE Uncharacterized protein C21orf59 homolog OS=Danio rerio PE=2 SV=1

 Score =  184 bits (466), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 109/149 (73%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG +MIVYPM LP HDPIR+E EN+EDLTGTQAS +VI      LW+A K +HR 
Sbjct: 142 ALDQLRGAVMIVYPMGLPPHDPIRMEIENQEDLTGTQASLQVITNEEAQLWWASKELHRG 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K ++D++GKNEK K IVKI K G GAP+REPV++E+E+KQ+MLHYY++QEE+K LE   D
Sbjct: 202 KKLQDYIGKNEKTKIIVKIQKRGQGAPAREPVVSEDEQKQMMLHYYKRQEELKKLEEADD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           +    S+W+D  +L++   GL  I W PR
Sbjct: 262 DTHLQSEWSDRQALKRQFQGLTNIKWGPR 290

Danio rerio (taxid: 7955)

>sp|P57076|CU059_HUMAN Uncharacterized protein C21orf59 OS=Homo sapiens GN=C21orf59 PE=1 SV=1

 Score =  182 bits (462), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 82/149 (55%), Positives = 113/149 (75%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG +MIVYPM LP +DPIR+EFEN+EDL+GTQA   VI+ +   LW+A K + R 
Sbjct: 142 ALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAGLNVIKEAEAQLWWAAKELRRT 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K + D++GKNEK K I KI + G GAP+REP+++ EE+KQLML+Y+R+QEE+K LE + D
Sbjct: 202 KKLSDYVGKNEKTKIIAKIQQRGQGAPAREPIISSEEQKQLMLYYHRRQEELKRLEENDD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           +A+ NS WADNT+L+++  G+  I W+PR
Sbjct: 262 DAYLNSPWADNTALKRHFHGVKDIKWRPR 290

Homo sapiens (taxid: 9606)

>sp|Q9VZH1|CU059_DROME Uncharacterized protein C21orf59 homolog OS=Drosophila melanogaster GN=CG18675 PE=2 SV=2

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 104/149 (69%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L+LLRG + IVYPM LP HD IR+EF N EDLTGTQASKEVIEPS    WFAG  M   
Sbjct: 142 ALNLLRGGVTIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLMG 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K + D+LG N+K K +VK+++IG G P RE V+++  ++Q+M   YR+QEE+K LE D D
Sbjct: 202 KLMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQEELKKLEQDDD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           + + NS WAD+ SL++   GL  + ++ R
Sbjct: 262 DEYLNSSWADSGSLKRQAHGLENVRFRFR 290

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
260790491	290	hypothetical protein BRAFLDRAFT_121345 [	0.967	0.513	0.590	1e-47
443694224	293	hypothetical protein CAPTEDRAFT_179325 [	0.974	0.511	0.58	3e-46
147898391	290	chromosome 21 open reading frame 59 [Xen	0.941	0.5	0.586	8e-46
91081277	292	PREDICTED: similar to MGC83493 protein [	0.961	0.506	0.557	2e-45
66500267	290	PREDICTED: uncharacterized protein C21or	0.961	0.510	0.587	2e-45
383861775	290	PREDICTED: uncharacterized protein C21or	0.961	0.510	0.574	5e-45
149742165	290	PREDICTED: uncharacterized protein C21or	0.967	0.513	0.563	5e-45
335773368	253	hypothetical protein [Equus caballus]	0.967	0.588	0.563	7e-45
354466268	243	PREDICTED: uncharacterized protein C21or	0.967	0.613	0.570	1e-44
431894702	290	hypothetical protein PAL_GLEAN10025728 [	0.967	0.513	0.563	1e-44

>gi|260790491|ref|XP_002590275.1| hypothetical protein BRAFLDRAFT_121345 [Branchiostoma floridae] gi|229275467|gb|EEN46286.1| hypothetical protein BRAFLDRAFT_121345 [Branchiostoma floridae]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 110/149 (73%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG  MIVYPM LP HDPIR+E EN+E+L GTQAS +VI     +LWF+GK MHR 
Sbjct: 142 ALDQLRGATMIVYPMGLPPHDPIRMELENKEELEGTQASLQVIPEEQASLWFSGKEMHRG 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K +RD++GKNEK K + KI K G G P REPV +EE+KKQ+MLH YRKQEEMK L  D +
Sbjct: 202 KNLRDYVGKNEKTKIVAKIQKRGQGPPGREPVFSEEDKKQMMLHAYRKQEEMKKLAEDNE 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           +A+ NSDWAD   L+++L G+  +SW+PR
Sbjct: 262 DAYMNSDWADTGKLKQDLHGIRNVSWRPR 290

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443694224|gb|ELT95417.1| hypothetical protein CAPTEDRAFT_179325 [Capitella teleta]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 113/150 (75%)

Query: 4   HHTLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMH 63
              L +LRG + IVYPM LP HDPIR EFEN EDL+G QAS+EVIE    ALW+AGK M 
Sbjct: 140 QEALDILRGAVTIVYPMGLPPHDPIRAEFENTEDLSGMQASQEVIELDRAALWWAGKEMV 199

Query: 64  RDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESD 123
           R K + DF+GKNEK K + K+ K G GAP+REPV++++E+K +M HYYRKQEEMK L+ D
Sbjct: 200 RGKKLCDFIGKNEKTKIVCKLQKKGLGAPAREPVVSQDEQKAMMAHYYRKQEEMKKLDQD 259

Query: 124 TDEAFRNSDWADNTSLRKNLLGLNRISWKP 153
            ++++ N+DWADN+SLR+   G+N I +KP
Sbjct: 260 AEDSYLNADWADNSSLRRQFQGVNDIMFKP 289

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|147898391|ref|NP_001086851.1| chromosome 21 open reading frame 59 [Xenopus laevis] gi|50416496|gb|AAH77554.1| MGC83493 protein [Xenopus laevis]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 85/145 (58%), Positives = 110/145 (75%)

Query: 10  LRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVR 69
           LRG +MIVYPM LP HDPIR+EFEN EDL+GT A + VIE     LW+AGK +HR + + 
Sbjct: 146 LRGAVMIVYPMGLPPHDPIRMEFENNEDLSGTHAGQLVIEEPESQLWWAGKELHRKQKLS 205

Query: 70  DFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFR 129
           D++GKNEK K IVKI K G GAP REPV+++EE+K+LM+HYYR+QEE K LE D D ++ 
Sbjct: 206 DYVGKNEKTKIIVKIQKRGQGAPGREPVISQEEQKKLMMHYYRRQEEFKKLEEDEDISYL 265

Query: 130 NSDWADNTSLRKNLLGLNRISWKPR 154
           N++WAD+ SL++   G+  I WKPR
Sbjct: 266 NAEWADSNSLKRQFQGVKDIKWKPR 290

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91081277|ref|XP_967417.1| PREDICTED: similar to MGC83493 protein [Tribolium castaneum] gi|270005216|gb|EFA01664.1| hypothetical protein TcasGA2_TC007236 [Tribolium castaneum]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 117/149 (78%), Gaps = 1/149 (0%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            +++L+G  +IVYPM LP HD IR+EFEN EDL+GTQAS EVI+P+   LWF GK M+RD
Sbjct: 142 AINILKGATLIVYPMKLPPHDVIRMEFENIEDLSGTQASLEVIDPATAQLWFCGKEMYRD 201

Query: 66  -KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDT 124
            K + D++GK EKCK IVK++K G G P+REP+M+EE++K+ M+H YR+QEE+K LE+D 
Sbjct: 202 GKMLGDYVGKIEKCKVIVKLTKRGQGPPAREPIMSEEQRKEFMMHAYRRQEELKKLEADD 261

Query: 125 DEAFRNSDWADNTSLRKNLLGLNRISWKP 153
           D+ + NS+W+D+++L+K   GL  ISW+P
Sbjct: 262 DDNYFNSEWSDSSNLKKTFHGLRNISWRP 290

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500267|ref|XP_623297.1| PREDICTED: uncharacterized protein C21orf59 homolog [Apis mellifera]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 112/148 (75%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L +LRG +MIVYPM LP HD I+ EFEN EDL+GTQAS EVI+  +  LWF+GK M   
Sbjct: 142 ALDILRGAVMIVYPMGLPPHDVIQQEFENTEDLSGTQASLEVIDVQLAQLWFSGKEMIIG 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K ++D+LG NEK K IVK+ K G+G P+REP+M+EEE+KQLMLH YR+QE++K LE D D
Sbjct: 202 KKLKDYLGMNEKTKIIVKLQKRGAGKPAREPLMSEEERKQLMLHAYRRQEQLKKLEQDDD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKP 153
           + + +S WAD  SL+++  GLN ISWKP
Sbjct: 262 DQYLDSPWADGGSLKRHFQGLNNISWKP 289

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861775|ref|XP_003706360.1| PREDICTED: uncharacterized protein C21orf59 homolog [Megachile rotundata]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 113/148 (76%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L +LRG + IVYPM LP HD IRLEFEN EDL+GTQAS EVI+  +  LWF+GK M   
Sbjct: 142 ALDILRGAVTIVYPMGLPPHDVIRLEFENTEDLSGTQASLEVIDVQLAQLWFSGKEMLPG 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K ++D+LG NEK K IVK+ K G+G P+REP+M+E+++KQLMLH Y++QE++K LE D D
Sbjct: 202 KKLKDYLGHNEKTKIIVKLQKRGAGRPAREPLMSEDQRKQLMLHAYKRQEQLKKLEQDDD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKP 153
           + + +S WAD +SL+++  GLN ISWKP
Sbjct: 262 DEYLDSPWADGSSLKRHFQGLNNISWKP 289

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149742165|ref|XP_001498633.1| PREDICTED: uncharacterized protein C21orf59-like [Equus caballus]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 113/149 (75%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG +MIVYPM LP +DP+R+EFEN+EDL+GTQA   VIE S   LW+A K + R 
Sbjct: 142 ALDQLRGAVMIVYPMGLPPYDPVRMEFENKEDLSGTQAGLSVIEESEAQLWWAAKELRRT 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K + D++GKNEK K IVKI + G GAP+REP+++ EE+KQLMLHY+R+QEE+K LE + D
Sbjct: 202 KKLSDYVGKNEKTKIIVKIQQRGQGAPAREPIISSEEQKQLMLHYHRRQEELKKLEENDD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           ++  NS WADNT+L+++  G+  I W+PR
Sbjct: 262 DSCLNSPWADNTALKRHFHGVKDIKWRPR 290

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|335773368|gb|AEH58369.1| hypothetical protein [Equus caballus]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 113/149 (75%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG +MIVYPM LP +DP+R+EFEN+EDL+GTQA   VIE S   LW+A K + R 
Sbjct: 105 ALDQLRGAVMIVYPMGLPPYDPVRMEFENKEDLSGTQAGLSVIEESEAQLWWAAKELRRT 164

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K + D++GKNEK K IVKI + G GAP+REP+++ EE+KQLMLHY+R+QEE+K LE + D
Sbjct: 165 KKLSDYVGKNEKTKIIVKIQQRGQGAPAREPIISSEEQKQLMLHYHRRQEELKKLEENDD 224

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           ++  NS WADNT+L+++  G+  I W+PR
Sbjct: 225 DSCLNSPWADNTALKRHFHGVKDIKWRPR 253

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354466268|ref|XP_003495596.1| PREDICTED: uncharacterized protein C21orf59-like [Cricetulus griseus] gi|344245364|gb|EGW01468.1| Uncharacterized protein C21orf59 [Cricetulus griseus]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 85/149 (57%), Positives = 113/149 (75%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG +MIVYPM LP +DPIR+EFEN+EDL+GTQA+ EVI+ S   LW+A K + R 
Sbjct: 95  ALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAALEVIQESEAQLWWAAKELRRT 154

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K + D++GKNEK K IVKI + G GAP+REP+M+ EE KQLML Y+R+QEE+K LE + D
Sbjct: 155 KKLSDYVGKNEKTKIIVKIQQRGQGAPAREPIMSSEEHKQLMLFYHRRQEELKKLEENDD 214

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           ++  NS WADNT+L+++  G+  I W+PR
Sbjct: 215 DSCLNSPWADNTALKRHFHGVKDIKWRPR 243

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431894702|gb|ELK04495.1| hypothetical protein PAL_GLEAN10025728 [Pteropus alecto]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 114/149 (76%)

Query: 6   TLSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRD 65
            L  LRG +MIVYPM LP +DPIR+EFEN+EDL+GTQA+  VIE S   LW+A K + R 
Sbjct: 142 ALDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAALSVIEESEAQLWWAAKELRRT 201

Query: 66  KFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTD 125
           K + D++GKNEK K IVKI + G GAP+REP+++ EE+KQLML+Y+R+QEE+K LE + D
Sbjct: 202 KKLSDYVGKNEKTKIIVKIQQRGQGAPAREPIISSEEQKQLMLYYHRRQEELKKLEENDD 261

Query: 126 EAFRNSDWADNTSLRKNLLGLNRISWKPR 154
           ++  NS WADNT+L+++  G+  I W+PR
Sbjct: 262 DSCLNSPWADNTALKRHFHGVKDIKWRPR 290

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
UNIPROTKB|P57076	290	C21orf59 "Uncharacterized prot	0.961	0.510	0.554	2.8e-43
UNIPROTKB|F1SHM2	290	C21orf59 "Uncharacterized prot	0.961	0.510	0.560	3.5e-43
RGD|1306954	290	RGD1306954 "similar to RIKEN c	0.961	0.510	0.567	3.5e-43
UNIPROTKB|E2QT18	243	C21orf59 "Uncharacterized prot	0.961	0.609	0.560	4e-42
FB|FBgn0040696	291	CG18675 [Drosophila melanogast	0.961	0.508	0.527	9.9e-39

UNIPROTKB|P57076 C21orf59 "Uncharacterized protein C21orf59" [Homo sapiens (taxid:9606)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 82/148 (55%), Positives = 113/148 (76%)

Query:     7 LSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDK 66
             L  LRG +MIVYPM LP +DPIR+EFEN+EDL+GTQA   VI+ +   LW+A K + R K
Sbjct:   143 LDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAGLNVIKEAEAQLWWAAKELRRTK 202

Query:    67 FVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDE 126
              + D++GKNEK K I KI + G GAP+REP+++ EE+KQLML+Y+R+QEE+K LE + D+
Sbjct:   203 KLSDYVGKNEKTKIIAKIQQRGQGAPAREPIISSEEQKQLMLYYHRRQEELKRLEENDDD 262

Query:   127 AFRNSDWADNTSLRKNLLGLNRISWKPR 154
             A+ NS WADNT+L+++  G+  I W+PR
Sbjct:   263 AYLNSPWADNTALKRHFHGVKDIKWRPR 290

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|F1SHM2 C21orf59 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 83/148 (56%), Positives = 113/148 (76%)

Query:     7 LSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDK 66
             L  LRG +MIVYPM LP +DPIR+EFEN+EDL+GTQA   VI+ S   LW+A K + R K
Sbjct:   143 LDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAGLSVIKESEAQLWWAAKELRRTK 202

Query:    67 FVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDE 126
              + D++GKNEK K IVKI + G GAP+REP+++ EE+KQLML+Y+R+QEE+K LE + D+
Sbjct:   203 KLSDYVGKNEKTKIIVKIQQRGQGAPAREPIISSEEQKQLMLYYHRRQEELKKLEENDDD 262

Query:   127 AFRNSDWADNTSLRKNLLGLNRISWKPR 154
             +  NS WADNT+L+++  G+  I W+PR
Sbjct:   263 SCLNSPWADNTALKRHFHGVKDIKWRPR 290

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1306954 RGD1306954 "similar to RIKEN cDNA 1110004E09" [Rattus norvegicus (taxid:10116)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 84/148 (56%), Positives = 113/148 (76%)

Query:     7 LSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDK 66
             L  LRG +MIVYPM LP +DPIR+EFEN+EDL+GTQA+ EVI+ S   LW+A K + R K
Sbjct:   143 LDQLRGAVMIVYPMGLPPYDPIRMEFENKEDLSGTQAALEVIQESEAQLWWAAKELRRTK 202

Query:    67 FVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDE 126
              + D++GKNEK K IVKI + G GAP+REP+++ EE KQLML Y+R+QEE+K LE + D+
Sbjct:   203 KLSDYVGKNEKTKIIVKIQQRGQGAPAREPLISSEEHKQLMLFYHRRQEELKKLEENDDD 262

Query:   127 AFRNSDWADNTSLRKNLLGLNRISWKPR 154
             +  NS WADNT+L+++  G+  I W+PR
Sbjct:   263 SCLNSPWADNTALKRHFHGVKDIKWRPR 290

GO:0005634 "nucleus" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

UNIPROTKB|E2QT18 C21orf59 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 83/148 (56%), Positives = 109/148 (73%)

Query:     7 LSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDK 66
             L  LRG +MIVYPM LP +DPIR EFEN+EDL+GTQA   VI  S   LW+  K + R K
Sbjct:    96 LDQLRGAVMIVYPMGLPPYDPIRKEFENKEDLSGTQAGLNVIRESEAQLWWVAKELRRTK 155

Query:    67 FVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDE 126
              + D++GKNEK K IVKI + G GAP+REPV++ EE+KQLML+Y R+QEE+K LE + D+
Sbjct:   156 TLSDYVGKNEKTKIIVKIQQRGQGAPAREPVISSEEQKQLMLYYQRRQEELKKLEENDDD 215

Query:   127 AFRNSDWADNTSLRKNLLGLNRISWKPR 154
             +  NS WADNT+L+++  G+  I W+PR
Sbjct:   216 SCLNSPWADNTALKRHFHGVKDIKWRPR 243

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0040696 CG18675 [Drosophila melanogaster (taxid:7227)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 78/148 (52%), Positives = 104/148 (70%)

Query:     7 LSLLRGCIMIVYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDK 66
             L+LLRG + IVYPM LP HD IR+EF N EDLTGTQASKEVIEPS    WFAG  M   K
Sbjct:   143 LNLLRGGVTIVYPMQLPPHDSIRMEFTNTEDLTGTQASKEVIEPSKAQFWFAGHQMLMGK 202

Query:    67 FVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDE 126
              + D+LG N+K K +VK+++IG G P RE V+++  ++Q+M   YR+QEE+K LE D D+
Sbjct:   203 LMSDYLGHNDKTKVVVKLNQIGEGPPGREAVISDPLRRQMMAEAYRRQEELKKLEQDDDD 262

Query:   127 AFRNSDWADNTSLRKNLLGLNRISWKPR 154
              + NS WAD+ SL++   GL  + ++ R
Sbjct:   263 EYLNSSWADSGSLKRQAHGLENVRFRFR 290


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      154       154   0.00088  105 3  11 22  0.36    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.56u 0.13s 17.69t   Elapsed:  00:00:06
  Total cpu time:  17.56u 0.13s 17.69t   Elapsed:  00:00:06
  Start:  Thu Aug 15 15:44:09 2013   End:  Thu Aug 15 15:44:15 2013

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0048812 "neuron projection morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DRC3	CU059_DANRE	No assigned EC number	0.5637	0.9675	0.5137	yes	N/A
P57076	CU059_HUMAN	No assigned EC number	0.5503	0.9675	0.5137	yes	N/A
Q9VZH1	CU059_DROME	No assigned EC number	0.5234	0.9675	0.5120	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
pfam11069	98	pfam11069, DUF2870, Protein of unknown function (D	8e-39

>gnl|CDD|220965 pfam11069, DUF2870, Protein of unknown function (DUF2870)

 Score =  126 bits (319), Expect = 8e-39
 Identities = 51/95 (53%), Positives = 70/95 (73%)

Query: 55  LWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQ 114
           LWFAGK + R K + D++GKNEK K IVK+ K GSGAP REPV++EE ++ +M + YR+Q
Sbjct: 4   LWFAGKELQRGKKLSDYVGKNEKTKIIVKLQKKGSGAPPREPVIDEEAQRAMMAYMYRRQ 63

Query: 115 EEMKLLESDTDEAFRNSDWADNTSLRKNLLGLNRI 149
           EE+K LE D D+++ NS WA+  SL+  L GL+ I
Sbjct: 64  EELKKLEEDDDDSYLNSQWANPNSLKNQLHGLSDI 98

This is a eukaryotic family of proteins with unknown function. Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
PF11069	98	DUF2870: Protein of unknown function (DUF2870); In	100.0
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	94.47
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	91.66
PTZ00044	76	ubiquitin; Provisional	91.61
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	89.11
KOG0004|consensus	156		89.02
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	89.0
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	87.83
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	87.01
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	86.93
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	86.61
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	86.46
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	85.77
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	85.57
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	85.53
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	85.37
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	84.33
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	82.18

>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function

Probab=100.00  E-value=8.9e-61  Score=356.21  Aligned_cols=98  Identities=51%  Similarity=0.919  Sum_probs=97.0

Q ss_pred             ceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCCCCCCCCHHHHHHHHHHHHHhHHHHhhhhhccccccccc
Q psy6853          52 MGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSREPVMNEEEKKQLMLHYYRKQEEMKLLESDTDEAFRNS  131 (154)
Q Consensus        52 ~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~REp~isee~qk~mMa~yykrQEElKkleedddd~ylnS  131 (154)
                      +||||||||+|.+|++|+||||+||||||||||+++|+|||+|||+||+|+||+||+||||||||||+||+||||+||||
T Consensus         1 ~a~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g~P~REp~isee~qk~mm~~~~rrqEElKkLee~ddd~ylns   80 (98)
T PF11069_consen    1 EAQLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQGPPPREPVISEEEQKAMMAYYYRRQEELKKLEEDDDDSYLNS   80 (98)
T ss_pred             CceEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCchhHHHhhcCCccc
Q psy6853         132 DWADNTSLRKNLLGLNRI  149 (154)
Q Consensus       132 ~WAd~~~LK~q~~Gl~~I  149 (154)
                      +||||++||+||||++||
T Consensus        81 ~Wad~~~Lk~~~~G~~~I   98 (98)
T PF11069_consen   81 QWADPKALKRQFHGLENI   98 (98)
T ss_pred             hccChHHHHHHhcccccC
Confidence            999999999999999998

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=94.47  E-value=0.034  Score=38.18  Aligned_cols=66  Identities=12%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             eecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          17 VYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        17 vyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      +|+..+++.+.|...=+--+...|       ++++.-.|++.|+.|..+.+|++| |-.+-..|.|=+..+|.+
T Consensus         9 ~~~l~v~~~~TV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~tL~~~-~i~~g~~l~v~~~~~gg~   74 (76)
T cd01800           9 MLNFTLQLSDPVSVLKVKIHEETG-------MPAGKQKLQYEGIFIKDSNSLAYY-NLANGTIIHLQLKERGGR   74 (76)
T ss_pred             EEEEEECCCCcHHHHHHHHHHHHC-------CCHHHEEEEECCEEcCCCCcHHHc-CCCCCCEEEEEEecCCCc
Confidence            355667777877643333333333       478889999999999999999988 455556677767666644

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=91.66  E-value=0.11  Score=35.33  Aligned_cols=59  Identities=20%  Similarity=0.284  Sum_probs=38.5

Q ss_pred             CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEeccc
Q psy6853          21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI   87 (154)
Q Consensus        21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~   87 (154)
                      .+.|.|-|.       ++...-+..+-++++.-.|+|+||.|..+.+|++| |-++.+.|-+=+.-+
T Consensus        14 ~v~~~~tV~-------~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~-~i~~~~tl~l~~~l~   72 (74)
T cd01793          14 EVTGQETVS-------DIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQC-GVEELCTLEVAGRLL   72 (74)
T ss_pred             EECCcCcHH-------HHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHc-CCCCCCEEEEEEecC
Confidence            445556553       33322233344688889999999999999999997 555555555444433

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=91.61  E-value=0.14  Score=34.35  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=37.6

Q ss_pred             CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853          21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG   88 (154)
Q Consensus        21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g   88 (154)
                      .+.+.+.|.-.-.--+       ...-++++...|+|+|+.|..+.+|++| +..+  ..|.+=+..+|
T Consensus        16 ~v~~~~tv~~lK~~i~-------~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~--~~i~l~~~~~g   75 (76)
T PTZ00044         16 NFEPDNTVQQVKMALQ-------EKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPG--STIHMVLQLRG   75 (76)
T ss_pred             EECCCCcHHHHHHHHH-------HHHCCCHHHeEEEECCEEccCCCcHHHcCCCCC--CEEEEEEEccC
Confidence            4556676643222222       2334588899999999999999999999 4444  34444444443

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=89.11  E-value=0.14  Score=33.68  Aligned_cols=62  Identities=23%  Similarity=0.417  Sum_probs=41.6

Q ss_pred             eecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853          17 VYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK   86 (154)
Q Consensus        17 vyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k   86 (154)
                      .|+..+++.+.|.       +|...-+...-++++...|-|.|+.|..+.+|++| |-.+-+.|++-+.+
T Consensus         7 ~~~~~v~~~~tV~-------~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~-~i~~~~~I~l~~k~   68 (69)
T PF00240_consen    7 TFTLEVDPDDTVA-------DLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDY-GIKDGSTIHLVIKP   68 (69)
T ss_dssp             EEEEEEETTSBHH-------HHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGG-TTSTTEEEEEEESS
T ss_pred             EEEEEECCCCCHH-------HhhhhcccccccccccceeeeeeecccCcCcHHHc-CCCCCCEEEEEEec
Confidence            3445555666664       22222222333788999999999999999999999 55555577776654

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>KOG0004|consensus

Probab=89.02  E-value=0.2  Score=40.74  Aligned_cols=41  Identities=27%  Similarity=0.518  Sum_probs=35.5

Q ss_pred             ccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEe
Q psy6853          44 SKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKI   84 (154)
Q Consensus        44 ~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl   84 (154)
                      ..|-|.++.-.|-|||++|..|.+|||| |++-.--.+++-|
T Consensus        32 ~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l   73 (156)
T KOG0004|consen   32 DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL   73 (156)
T ss_pred             cccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEe
Confidence            4677999999999999999999999999 7777766777665

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=89.00  E-value=0.2  Score=33.99  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=28.4

Q ss_pred             cccccccCCceeEeeecccccccchhhhhcCCCccceEE
Q psy6853          43 ASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAI   81 (154)
Q Consensus        43 a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKii   81 (154)
                      +...-++++.-.|+|.||+|..+.+|++| |-.+.+.|.
T Consensus        31 ~~~~gi~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~l~   68 (74)
T cd01807          31 SEHLNVPEEQQRLLFKGKALADDKRLSDY-SIGPNAKLN   68 (74)
T ss_pred             HHHHCCCHHHeEEEECCEECCCCCCHHHC-CCCCCCEEE
Confidence            33445688889999999999999999999 333333443

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=87.83  E-value=0.7  Score=31.32  Aligned_cols=39  Identities=15%  Similarity=0.364  Sum_probs=30.3

Q ss_pred             ccCCceeEeeecccccccchhhhhcCCCccceEEEEeccc
Q psy6853          48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKI   87 (154)
Q Consensus        48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~   87 (154)
                      |+++.-.|+++||.|..+.+|++| |-.+.+.+.+=+.-+
T Consensus        34 i~~~~q~L~~~G~~L~D~~tL~~~-~i~~~~tl~l~~~l~   72 (74)
T cd01810          34 VQADQFWLSFEGRPMEDEHPLGEY-GLKPGCTVFMNLRLR   72 (74)
T ss_pred             CCHHHeEEEECCEECCCCCCHHHc-CCCCCCEEEEEEEcc
Confidence            578888999999999999999997 655555565544433

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=87.01  E-value=0.25  Score=33.63  Aligned_cols=35  Identities=14%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             cccCCceeEeeeccccccc-chhhhhcCCCccceEEE
Q psy6853          47 VIEPSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIV   82 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiiv   82 (154)
                      -++++.-.|+++||.|..+ ..|++| |-++...|++
T Consensus        34 gip~~~q~Li~~Gk~L~D~~~~L~~~-gi~~~~~l~l   69 (71)
T cd01796          34 GIPASQQQLIYNGRELVDNKRLLALY-GVKDGDLVVL   69 (71)
T ss_pred             CCCHHHeEEEECCeEccCCcccHHHc-CCCCCCEEEE
Confidence            3577888999999999887 568888 6666677765

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01803 Ubiquitin Ubiquitin

Probab=86.93  E-value=0.72  Score=30.47  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=37.7

Q ss_pred             CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      .+++.+.|.-.-+--+...       -++++...|||.|+.|..+++|++| |-.+-+.|.|-+..+|
T Consensus        16 ~v~~~~tV~~lK~~i~~~~-------g~~~~~q~L~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~~~g   75 (76)
T cd01803          16 EVEPSDTIENVKAKIQDKE-------GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG   75 (76)
T ss_pred             EECCcCcHHHHHHHHHHHh-------CCCHHHeEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEccC
Confidence            4556666643322222222       3477788999999999999999997 3333455555554443

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=86.61  E-value=0.42  Score=35.33  Aligned_cols=42  Identities=12%  Similarity=0.182  Sum_probs=30.0

Q ss_pred             cccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG   88 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g   88 (154)
                      .+-|+++.-.|+++||.|..+.+|++| +..+.  .|-+=+.-+|
T Consensus        60 ~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~s--tL~l~~~l~G  102 (103)
T cd01802          60 LEGIPVAQQHLIWNNMELEDEYCLNDYNISEGC--TLKLVLAMRG  102 (103)
T ss_pred             HhCCChHHEEEEECCEECCCCCcHHHcCCCCCC--EEEEEEecCC
Confidence            344688889999999999999999999 44444  4444333333

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=86.46  E-value=0.48  Score=32.49  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=24.5

Q ss_pred             ccccccCCceeEeeecccccccchhhhh
Q psy6853          44 SKEVIEPSMGALWFAGKAMHRDKFVRDF   71 (154)
Q Consensus        44 ~~evi~~~~a~LW~aGKel~r~k~l~dY   71 (154)
                      +.+-++++.-.|||+|+.|..+.+|.+|
T Consensus        30 ~~~gi~~~~q~Li~~G~~L~D~~~l~~~   57 (70)
T cd01794          30 AAEGVDPCCQRWFFSGKLLTDKTRLQET   57 (70)
T ss_pred             HHhCCCHHHeEEEECCeECCCCCCHHHc
Confidence            3445788889999999999999999998

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=85.77  E-value=0.61  Score=30.60  Aligned_cols=56  Identities=18%  Similarity=0.226  Sum_probs=36.1

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEE
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAI   81 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKii   81 (154)
                      |+..+++.+.|.-.-+--++..|       ++++...|++.|+.+..+++|++| |-.+-+.|+
T Consensus        12 ~~i~v~~~~tv~~lK~~i~~~~g-------i~~~~q~L~~~g~~l~d~~~L~~~-~i~~g~~l~   67 (71)
T cd01812          12 HDLSISSQATFGDLKKMLAPVTG-------VEPRDQKLIFKGKERDDAETLDMS-GVKDGSKVM   67 (71)
T ss_pred             EEEEECCCCcHHHHHHHHHHhhC-------CChHHeEEeeCCcccCccCcHHHc-CCCCCCEEE
Confidence            34456666666533333333333       477888999999999999999998 333334444

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=85.57  E-value=0.73  Score=30.92  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=27.6

Q ss_pred             ccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853          48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV   82 (154)
Q Consensus        48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv   82 (154)
                      ++++.-.|+++||.|..+++|++| |-.+-+.|.+
T Consensus        35 i~~~~~~Li~~Gk~L~d~~tL~~~-~i~~~stl~l   68 (71)
T cd01808          35 ANQEQLVLIFAGKILKDTDTLTQH-NIKDGLTVHL   68 (71)
T ss_pred             CCHHHEEEEECCeEcCCCCcHHHc-CCCCCCEEEE
Confidence            577888999999999999999999 5555555543

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=85.53  E-value=0.94  Score=29.90  Aligned_cols=56  Identities=27%  Similarity=0.392  Sum_probs=36.4

Q ss_pred             CCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEE
Q psy6853          21 NLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVK   83 (154)
Q Consensus        21 gLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivK   83 (154)
                      .+++.+.|.-.-+--+.       ..-++++...|++.|+.|..+++|++| +..+.---++++
T Consensus        16 ~v~~~~tv~~lK~~i~~-------~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~   72 (76)
T cd01806          16 DIEPTDKVERIKERVEE-------KEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA   72 (76)
T ss_pred             EECCCCCHHHHHHHHhH-------hhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence            45566666433322222       234588899999999999999999999 544444444443

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=85.37  E-value=0.72  Score=32.23  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI   84 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl   84 (154)
                      -++++.-.|++.||.|..+.+|++| |-.+.+.|.+=+
T Consensus        37 gi~~~~QrLi~~Gk~L~D~~tL~~y-~i~~~~~i~l~~   73 (78)
T cd01797          37 NVEPECQRLFYRGKQMEDGHTLFDY-NVGLNDIIQLLV   73 (78)
T ss_pred             CCCHHHeEEEeCCEECCCCCCHHHc-CCCCCCEEEEEE
Confidence            4688888999999999999999998 555566665533

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=84.33  E-value=0.44  Score=31.83  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF   71 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY   71 (154)
                      ..+.+.|-|.-       +...-+...-++++...|+++|++|..+.+|++|
T Consensus        13 ~~v~~~~tV~~-------lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~   57 (70)
T cd01798          13 VEVDPDTDIKQ-------LKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQEC   57 (70)
T ss_pred             EEECCCChHHH-------HHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHc
Confidence            35556666642       2222233344577889999999999999999997

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=82.18  E-value=0.62  Score=31.21  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=26.5

Q ss_pred             cCCceeEeeecccccccchhhhhcCCCccceEEEEec
Q psy6853          49 EPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKIS   85 (154)
Q Consensus        49 ~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~   85 (154)
                      +++.-.|++.|+.|..+++|++| |-.+-+.|+|=+.
T Consensus        39 ~~~~q~L~~~G~~L~d~~~L~~~-~i~~~~~i~~~~~   74 (77)
T cd01805          39 PPEQQKLIYSGKILKDDTTLEEY-KIDEKDFVVVMVS   74 (77)
T ss_pred             ChhHeEEEECCEEccCCCCHHHc-CCCCCCEEEEEEe
Confidence            67888999999999999999998 3333344554443

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	94.56
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	94.17
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	93.76
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	93.28
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	92.38
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	92.23
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	92.2
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	91.67
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	91.34
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	90.91
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	90.73
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	90.64
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	90.21
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	90.07
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	89.73
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	89.4
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	89.33
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	89.15
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	89.15
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	89.01
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	88.87
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	88.69
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	88.65
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	88.18
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	87.78
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	87.88
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	87.71
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	87.62
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	87.3
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	86.9
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	86.34
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	86.29
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	86.07
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	86.01
1we6_A	111	Splicing factor, putative; structural genomics, ub	85.95
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	85.43
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	85.34
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	85.01
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	84.6
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	84.31
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	84.29
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	83.4
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	83.38
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	82.98
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	82.89
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	81.8
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	81.7
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	81.66
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	80.97
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	80.23
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	80.08

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=94.56  E-value=0.028  Score=38.68  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=35.2

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAP   92 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP   92 (154)
                      -++++.-.|-|+||.|..+++|++| |-.+-+.|.|-+.+...++|
T Consensus        38 gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~~i~l~~~~~~~~~~   82 (95)
T 1uel_A           38 AFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVMVTKPKAVST   82 (95)
T ss_dssp             TCCTTTEEEEETTEECCTTSBGGGG-TCCSSSEEEEEESSCCCCCC
T ss_pred             CCChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEeCCCCCCC
Confidence            4578889999999999999999999 44555677776766655555

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=94.17  E-value=0.016  Score=39.44  Aligned_cols=67  Identities=22%  Similarity=0.302  Sum_probs=41.6

Q ss_pred             cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853          19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS   93 (154)
Q Consensus        19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~   93 (154)
                      +..+++.|.|.-.=+--++       ..-++++.-.|.|+||.|..+++|++| |-.+-+.|.+=+..+|.+.|.
T Consensus        14 ~l~v~~~~TV~~LK~~I~~-------~~gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~l~l~~rl~Gg~~~~   80 (88)
T 4fbj_B           14 EIDIEPTDKVERIKERVEE-------KEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLALRGGGGLR   80 (88)
T ss_dssp             EEECCTTCBHHHHHHHHHH-------HHCCCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECBCC------
T ss_pred             EEEECCCCCHHHHHHHHHH-------HHCcChhHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEECCCCCCCC
Confidence            3356667776422222222       233577888999999999999999999 444556677777777776653

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=93.76  E-value=0.016  Score=40.54  Aligned_cols=53  Identities=9%  Similarity=0.158  Sum_probs=37.4

Q ss_pred             cccccCCceeEeeeccccccc-chhhhhcCCCccceEEEEecccCC-CCCCCCCCC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIVKISKIGS-GAPSREPVM   98 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiivKl~k~g~-GaP~REp~i   98 (154)
                      ..-|.++.-.|.+.||.|..+ ++|.+| |-.+-..|+|.+..+|. .+|++.|.|
T Consensus        44 ~~gip~~~qrL~~~gk~L~D~~~tL~~y-gI~~g~~l~l~~~~~gg~~~~~~~~~~   98 (102)
T 1v5o_A           44 ESGVPAEEAQIVYMEQLLTDDHCSLGSY-GLKDGDMVVLLQKDNVGLRTPGRTPSG   98 (102)
T ss_dssp             HTCCCGGGBCEEETTEEECCSSSBHHHH-TCCTTEEEEECBCCCCCCSSCCCCCCC
T ss_pred             HHCcChHHeEEEECCEECCCCcccHHHC-CCCCCCEEEEEECCCCCCCCCCCCCCC
Confidence            344678888999999999887 689999 33445668887776555 344454544

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=93.28  E-value=0.033  Score=36.45  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=39.7

Q ss_pred             cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      +..+++.+.|...-+--+       ...-++++.-.|.|.||.|..+++|++| |-.+-+.|.|-+..+|.+
T Consensus        17 ~~~v~~~~tV~~lK~~i~-------~~~~ip~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~rl~GG~   80 (85)
T 3n3k_B           17 ILEVEPSDTIENVKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIHNHSALYLLLKLRGGG   80 (85)
T ss_dssp             EEECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETBEECCTTCBTTTT-TCCTTCEEEEEECCC---
T ss_pred             EEEECCCCcHHHHHHHHH-------HHHCCCHHHEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeccCCC
Confidence            345666677653322222       2334678888999999999999999999 333344555555555544

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=92.38  E-value=0.14  Score=34.08  Aligned_cols=46  Identities=15%  Similarity=0.207  Sum_probs=34.2

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS   93 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~   93 (154)
                      .-++++.-.|.|.||.|..+++|.+| |-.+-+.|.+-+..+| |+|+
T Consensus        43 ~gip~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~~~~g-G~~~   88 (89)
T 1wy8_A           43 FDVRPECQRLFYRGKQLENGYTLFDY-DVGLNDIIQLLVRPDS-GPSS   88 (89)
T ss_dssp             SCCCTTTEEEEETTEECCSSSBHHHH-TCCTTCEEEEEECCCC-SSCC
T ss_pred             HCcChhhEEEEECCeECCCCCCHHHC-CCCCCCEEEEEEeCCC-CCCC
Confidence            34578889999999999999999999 3334456666666665 4553

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=92.23  E-value=0.061  Score=38.00  Aligned_cols=63  Identities=19%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      |...+++.|.|.-.=+--++..       -++++.-.|.|.||.|..+++|++| |-.+-+.|.+=+.+..
T Consensus        14 ~~l~v~~~~TV~~LK~~I~~~~-------gip~~~QrLi~~Gk~L~D~~tL~~~-~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B           14 VPLDLEPSNTILETKTKLAQSI-------SCEESQIKLIYSGKVLQDSKTVSEC-GLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             EEECCCTTSBHHHHHHHHHHTT-------TSCGGGCEEEETTEECCTTSBTTTT-TCCTTCEEEEECCC--
T ss_pred             EEEEECCCCcHHHHHHHHHHHH-------CCChhhEEEEECCEECCCcCCHHHc-CCCCCCEEEEEEcCCC
Confidence            3445777777753222222222       3577788999999999999999999 4444556766666544

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=92.20  E-value=0.19  Score=34.06  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=33.6

Q ss_pred             cccCCceeEeeecccccccchhhhhc-CCCccceEEEEecccCCC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFL-GKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYi-GkNEKTKiivKl~k~g~G   90 (154)
                      -++++.-.|-|+||.|..+++|++|+ |-.+-+.|.+=+..+|.+
T Consensus        46 ~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~gg~   90 (93)
T 1wgd_A           46 RPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSGP   90 (93)
T ss_dssp             CCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCCCCC
T ss_pred             CCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCCCCC
Confidence            46788899999999999999999997 444555666655555543

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=91.67  E-value=0.08  Score=35.71  Aligned_cols=64  Identities=20%  Similarity=0.295  Sum_probs=40.1

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA   91 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga   91 (154)
                      ..+++.+.|.-.-+--+       ...-++++.-.|.|.|+.|..+++|++| |-.+-+.|.|=+..+|.+.
T Consensus        16 ~~v~~~~TV~~LK~~i~-------~~~gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~r~~gG~~   79 (96)
T 3k9o_B           16 LEVEPSDTIENVKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGYAD   79 (96)
T ss_dssp             EECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCC---
T ss_pred             EEECCCCCHHHHHHHHH-------hhhCCChhHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEEcCCCCc
Confidence            34566666643222222       2233577888999999999999999999 3344456666666666443

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=91.34  E-value=0.12  Score=35.07  Aligned_cols=47  Identities=13%  Similarity=0.131  Sum_probs=35.9

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS   93 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~   93 (154)
                      .-++++.-.|.|.||.|..+++|.+| |-.+-+.|.+=+..+|.++|.
T Consensus        50 ~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~~g~~~~   96 (96)
T 1wx8_A           50 LHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVHVVVRSHSGPSSG   96 (96)
T ss_dssp             TCSCTTTBCCEETTEECCTTSCHHHH-TCCTTEEEECCBCCSSCSSCC
T ss_pred             hCCCHHHEEEEECCEECCCcCCHHHC-CCCCCCEEEEEEeCCCCCCCC
Confidence            34578888999999999999999999 334445677767777776663

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=90.91  E-value=0.17  Score=35.48  Aligned_cols=46  Identities=15%  Similarity=0.238  Sum_probs=33.3

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAP   92 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP   92 (154)
                      .-+.++.-.|.|.||.|..+++|.+| |-.+-+.|.|-+.+...+|+
T Consensus        57 ~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~g~ti~lv~~~~~~~~~  102 (106)
T 1ttn_A           57 EGVEPGSQRWFFSGRPLTDKMKFEEL-KIPKDYVVQVIVSQPVQNPT  102 (106)
T ss_dssp             TCCCSTTCEEEETTEECCTTSHHHHC-CCSSSCEEEEECCCSSCC--
T ss_pred             HCcCcccEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCCCCCC
Confidence            34578888999999999999999999 33344567776766655544

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=90.73  E-value=0.17  Score=35.01  Aligned_cols=44  Identities=18%  Similarity=0.333  Sum_probs=32.6

Q ss_pred             ccccCCceeEeeeccccccc-chhhhhcCCCccceEEEEecccCCC
Q psy6853          46 EVIEPSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      +-++++.-.|-|+||.|..+ ++|++| |-.+-+.|.+=+..+|.+
T Consensus        48 ~gip~~~QrLi~~Gk~L~D~~~tL~~y-gI~~gstl~lv~r~~gg~   92 (94)
T 2kan_A           48 ENTPIKRMQLYYSGIELADDYRNLNEY-GITEFSEIVVFLKSINRA   92 (94)
T ss_dssp             SSSCTTTEEEEETTEEECCTTSBHHHH-TCCTTEEEEEEECCCSSC
T ss_pred             HCcCHHHEEEEECCEECCCCcccHHHC-CCCCCCEEEEEEeCCCCC
Confidence            34588899999999999999 999999 333445566666666554

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=90.64  E-value=0.12  Score=32.70  Aligned_cols=61  Identities=23%  Similarity=0.293  Sum_probs=38.6

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      ..+++.+.|.-.-+--+       ...-++++.-.|-|.||.|..+++|++| |-.+-+.|.+-+..+|
T Consensus        15 ~~v~~~~tv~~lK~~i~-------~~~~i~~~~q~L~~~g~~L~d~~tL~~~-~i~~g~~i~l~~~~~G   75 (76)
T 1ndd_A           15 IDIEPTDKVERIKERVE-------EKEGIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLALRG   75 (76)
T ss_dssp             EECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC-
T ss_pred             EEECCCChHHHHHHHHH-------HHHCcChHHEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCC
Confidence            34566677653222222       2233578888999999999999999999 3334445665555444

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=90.21  E-value=0.15  Score=32.20  Aligned_cols=60  Identities=22%  Similarity=0.348  Sum_probs=38.5

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG   88 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g   88 (154)
                      ..+++.+.|.-.-+--+       ...-++++.-.|.|.||.|..+++|++| +..  -+.|.|-+..+|
T Consensus        15 i~v~~~~tv~~lK~~i~-------~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~--g~~i~l~~~~~G   75 (76)
T 3a9j_A           15 LEVEPSDTIENVKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQR--ESTLHLVLRLRG   75 (76)
T ss_dssp             EECCTTCBHHHHHHHHH-------HHHCCCGGGEEEEETTEECCTTCBTGGGTCCT--TCEEEEEECCCC
T ss_pred             EEECCCCcHHHHHHHHH-------HHHCcCHHHeEEEECCeECCCCCcHHHcCCCC--CCEEEEEEeCCC
Confidence            34566666642222222       2223578889999999999999999999 443  345665555554

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=90.07  E-value=0.1  Score=35.36  Aligned_cols=62  Identities=21%  Similarity=0.310  Sum_probs=37.7

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS   89 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~   89 (154)
                      ..+++.+.|...-+--+       ...-++++.-.|.|.||.|..+++|++| |-.+-+.|.+-+..+|.
T Consensus        24 l~v~~~~TV~~LK~~I~-------~~~gip~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A           24 VEMEPSDTIENLKAKIQ-------DKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             EECCTTSBHHHHHHHHH-------HHHCCCGGGCEEEETTEECCTTSBSGGG-TCCTTCEEEEEC-----
T ss_pred             EEECCCChHHHHHHHHH-------HHHCcChhhEEEEECCEECCCCCcHHHc-CCCCCCEEEEEEeCCCC
Confidence            34566666642222222       2233578888999999999999999999 33344567776666664

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=89.73  E-value=0.38  Score=33.49  Aligned_cols=42  Identities=19%  Similarity=0.206  Sum_probs=30.0

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      .-|.++.-.|-|.||.|..+++|.+| |-.+-+.|.|-+..+|
T Consensus        50 ~gip~~~qrLi~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~~   91 (106)
T 1wx7_A           50 FKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKRQH   91 (106)
T ss_dssp             HTCCTTTEEEEETTEECCTTSCHHHH-TCCTTEEEEEEECCCC
T ss_pred             HCcChhhEEEEECCEECCCcCcHHHc-CCCCCCEEEEEEcCCC
Confidence            34678889999999999999999999 2233345555444443

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=89.40  E-value=0.14  Score=34.60  Aligned_cols=43  Identities=16%  Similarity=0.217  Sum_probs=29.9

Q ss_pred             ccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccCCC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g~G   90 (154)
                      .-++++.-.|.|+||.|..+++|++| +.  +-+.|.+-+..+|.+
T Consensus        38 ~gip~~~qrL~~~Gk~L~D~~tL~~~~I~--~g~~i~l~~~~~gg~   81 (88)
T 2hj8_A           38 EGVQDDLFWLTFEGKPLEDQLPLGEYGLK--PLSTVFMNLRLRGGL   81 (88)
T ss_dssp             TCSCTTTEEEESSSSCCCTTSBHHHHHCS--TTCEEEEEEC-----
T ss_pred             hCCChhHEEEEECCEECCCCCcHHHcCCC--CCCEEEEEEEcCCCc
Confidence            34688889999999999999999999 43  334566666655543

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=89.33  E-value=0.24  Score=34.80  Aligned_cols=64  Identities=11%  Similarity=0.129  Sum_probs=46.3

Q ss_pred             CCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCCC
Q psy6853          23 PTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSR   94 (154)
Q Consensus        23 P~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~R   94 (154)
                      -+.+|++..++.-.+       .+-++++...|.|.|+.|..+.++.+| +-.+-..|-|-++++|.++|.+
T Consensus        25 ~~~t~l~kl~~~y~~-------~~gi~~~~~rf~FdG~~l~~~~Tp~dl-~medgD~Idv~~~~~GG~~~~~   88 (94)
T 2io1_B           25 KRHTPLSKLMKAYCE-------RQGLSMRQIRFRFDGQPINETDTPAQL-EMEDEDTIDVFQQQTGGVPESS   88 (94)
T ss_dssp             ETTSCTHHHHHHHHH-------HHTCCGGGEEEEETTEECCTTCCTTTT-TCCTTCEEEEEECCEESCCC--
T ss_pred             CCCCHHHHHHHHHHH-------HhCCCcccEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEEeccCCCccce
Confidence            455666655544332       333577899999999999999999999 4555566888899999888754

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=89.15  E-value=0.15  Score=33.11  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=28.2

Q ss_pred             ccccCCceeEeeecccccccchhhhh-cCCCccceEEEE
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVK   83 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivK   83 (154)
                      .-++++.-.|.|+||.|..+++|++| +..+..--++++
T Consensus        38 ~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r   76 (79)
T 3phx_B           38 EGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   76 (79)
T ss_dssp             HTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             cCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence            34577888999999999999999999 544443334433

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=89.15  E-value=0.13  Score=37.63  Aligned_cols=45  Identities=18%  Similarity=0.290  Sum_probs=32.1

Q ss_pred             cccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      .+-++++.-.|.|+|+.|..+++|++| |-.+-+.|.+=+.-+|.|
T Consensus       114 ~~gip~~~q~L~~~G~~L~d~~tL~~y-~i~~g~~l~l~~rl~GG~  158 (159)
T 3rt3_B          114 LEGVQDDLFWLTFEGKPLEDQLPLGEY-GLKPLSTVFMNLRLRGGG  158 (159)
T ss_dssp             HHTCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCC---
T ss_pred             HHCCCHHHEEEEECCeecCCCCCHHHc-CCCCCCEEEEEEecCCCC
Confidence            345688889999999999999999999 334444566666666665

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=89.01  E-value=0.26  Score=32.88  Aligned_cols=27  Identities=19%  Similarity=0.444  Sum_probs=23.6

Q ss_pred             ccccCCceeEeeecccccccchhhhh-c
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF-L   72 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY-i   72 (154)
                      .-++++.-.|.|+||.|..+++|++| +
T Consensus        39 ~gip~~~qrLi~~Gk~L~d~~tL~~~~i   66 (90)
T 4dwf_A           39 VSIPSEKQRLIYQGRVLQDDKKLQEYNV   66 (90)
T ss_dssp             HTCCGGGEEEEETTEECCTTSBGGGGTC
T ss_pred             hCCCHHHEEEEECCeECCCCCCHHHcCC
Confidence            34577888999999999999999999 5

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=88.87  E-value=0.11  Score=34.22  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=30.5

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      -++++.-.|.|.||.|..+++|++| |-.+-+.|.|=+.-+|
T Consensus        47 gip~~~qrL~~~G~~L~d~~tL~~~-~i~~~~~i~l~~rl~G   87 (88)
T 3dbh_I           47 GIPPQQQRLIYSGKQMNDEKTAADY-KILGGSVLHLVLRLRG   87 (88)
T ss_dssp             CCCGGGCCEEETTEECCTTSBGGGG-TCCTTCEEEECCCCCC
T ss_pred             CcCHHHEEEEECCeECCCCCcHHHc-CCCCCCEEEEEEeCCC
Confidence            3577888999999999999999999 3344455665554444

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=88.69  E-value=0.15  Score=33.10  Aligned_cols=43  Identities=23%  Similarity=0.388  Sum_probs=30.7

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      -++++.-.|.|.||.|..+++|++| |-.+-+.|.|=+..+|.+
T Consensus        38 ~i~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~l~l~~r~~GG~   80 (85)
T 3mtn_B           38 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKWSTLFLLLRLRGGG   80 (85)
T ss_dssp             CCCGGGCEEEETTEECCTTSBTGGG-TCCTTCEEEEECCCCCC-
T ss_pred             CcChHHEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEECcCCC
Confidence            4577888999999999999999999 333344555555555543

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=88.65  E-value=0.41  Score=34.95  Aligned_cols=48  Identities=15%  Similarity=0.138  Sum_probs=30.5

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCCC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPSR   94 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~R   94 (154)
                      .-|.++.-.|-|.||.|..+++|.+| |-.+-+.|.|=+..+|.++++.
T Consensus        65 ~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstI~lv~~~~gg~~~~~  112 (125)
T 1j8c_A           65 FKSQTDQLVLIFAGKILKDQDTLIQH-GIHDGLTVHLVIKRDPNSSSVD  112 (125)
T ss_dssp             HCSCSSSEEEEETTEEESTTSCGGGT-TCSSSEEEEEEEC---------
T ss_pred             HCcCcceEEEEECCEEcCCCCCHHHc-CCCCCCEEEEEeccCCCCCCcc
Confidence            34678889999999999999999999 3334466777676666655543

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=88.18  E-value=0.63  Score=35.01  Aligned_cols=44  Identities=23%  Similarity=0.112  Sum_probs=33.3

Q ss_pred             ccccC--CceeEeeecccccccchhhhh-cCCCcc----ceEEEEecccCC
Q psy6853          46 EVIEP--SMGALWFAGKAMHRDKFVRDF-LGKNEK----CKAIVKISKIGS   89 (154)
Q Consensus        46 evi~~--~~a~LW~aGKel~r~k~l~dY-iGkNEK----TKiivKl~k~g~   89 (154)
                      +.|++  +.-.|=|+||.|.++++|++| |-.++-    +.+-+-++.+|.
T Consensus        56 egiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g~  106 (126)
T 1se9_A           56 ENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVT  106 (126)
T ss_dssp             SSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSS
T ss_pred             ccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCCc
Confidence            34454  678899999999999999999 555544    667777776654

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=87.78  E-value=0.098  Score=33.63  Aligned_cols=56  Identities=16%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEE
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIV   82 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiiv   82 (154)
                      ..+++.+.|       ++|...-+...-++++.-.|-++||.|..+++|++| +..+..--+++
T Consensus        15 ~~v~~~~tV-------~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~   71 (76)
T 3b1l_X           15 VEVDSDTSI-------LQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ   71 (76)
Confidence            345555555       333333333444678888999999999999999999 55444333333

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=87.88  E-value=0.57  Score=32.42  Aligned_cols=59  Identities=19%  Similarity=0.197  Sum_probs=39.1

Q ss_pred             CCCCCchhhhhhccc-ccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853          21 NLPTHDPIRLEFENR-EDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK   86 (154)
Q Consensus        21 gLP~~Dpir~elen~-edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k   86 (154)
                      .+++-|.|.-.=+-- ++.       +-++++.-.|.|+||.|..+.+|++|-=+.+.+.|.|=+++
T Consensus        19 ~v~~~~TV~~lK~~I~~~~-------~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~   78 (87)
T 2lxa_A           19 DFSPSDTILQIKQHLISEE-------KASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP   78 (87)
T ss_dssp             ECCTTCBHHHHHHHHHHTT-------SCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred             cCCCCCcHHHHHHHHHHHh-------cCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence            356777775322222 333       33689999999999999999999999322344566665543

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=87.71  E-value=0.32  Score=33.25  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      ..+++.+.|...-+--+       ...-++++.-.|.|+||.|..+++|.+| |-.+-+.|.+=+.-+|
T Consensus        32 l~v~~~~TV~~LK~~I~-------~~~gip~~~qrLi~~Gk~L~D~~tL~~y-~I~~gstI~lv~rl~G   92 (93)
T 2l7r_A           32 FEVTGQETVAQIKAHVA-------SLEGIAPEDQVVLLAGAPLEDEATLGQC-GVEALTTLEVAGRMLG   92 (93)
T ss_dssp             EECCSSCBHHHHHHHHH-------HHHTCCGGGCEEEETTEECCTTSBHHHH-TCCSSCEEEEECCCCC
T ss_pred             EEeCCCCcHHHHHHHHH-------HHhCcChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecCC
Confidence            34566666643222222       2233578888999999999999999999 3334455655555444

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=87.62  E-value=0.9  Score=30.67  Aligned_cols=44  Identities=14%  Similarity=0.246  Sum_probs=33.6

Q ss_pred             CCceeEeeeccccccc-chhhhhcCCCccceEEEEecccCCCCCCC
Q psy6853          50 PSMGALWFAGKAMHRD-KFVRDFLGKNEKCKAIVKISKIGSGAPSR   94 (154)
Q Consensus        50 ~~~a~LW~aGKel~r~-k~l~dYiGkNEKTKiivKl~k~g~GaP~R   94 (154)
                      ++.-.|-|.||.|..+ ++|.+| |-.+-+.|.|=+.+.+..+|+.
T Consensus        42 ~~~qrLi~~Gk~L~D~~~tL~~y-~i~~g~~i~l~~~~~~~~~~~~   86 (95)
T 1wia_A           42 ESQMKLIYQGRLLQDPARTLSSL-NITNNCVIHCHRSPPGAAVSGP   86 (95)
T ss_dssp             TTTCEEEETTEECCCSSCBTTTT-TCCTTEEEEEECCCCCCCCCCC
T ss_pred             cCcEEEEECCEEccCCcCCHHHc-CCCCCCEEEEEECCCCCCCCCC
Confidence            7788899999999999 999999 4445566777777666655543

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=87.30  E-value=0.59  Score=30.23  Aligned_cols=41  Identities=10%  Similarity=0.159  Sum_probs=30.5

Q ss_pred             ccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG   88 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g   88 (154)
                      +-++++.-.|.|+|+.|..+++|++| +..+  +.|.+=+..+|
T Consensus        37 ~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~--~~i~l~~~~~G   78 (79)
T 2uyz_B           37 QGVPMNSLRFLFEGQRIADNHTPKELGMEEE--DVIEVYQEQTG   78 (79)
T ss_dssp             HTCCGGGEEEEETTEECCTTCCHHHHTCCTT--EEEEEEECCCC
T ss_pred             HCCCcccEEEEECCEEeCCCCCHHHcCCCCC--CEEEEEEeccC
Confidence            34678889999999999999999999 4433  34555555554

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=86.90  E-value=0.34  Score=33.00  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=31.4

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS   89 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~   89 (154)
                      -++++.-.|.|.||.|..+++|++| |-.+-+.|.+-+..+|.
T Consensus        35 gi~~~~qrL~~~Gk~L~D~~tL~~~-gi~~g~~i~l~~~~~gG   76 (98)
T 1yx5_B           35 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG   76 (98)
T ss_dssp             CCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCCC
T ss_pred             CcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEeCCCC
Confidence            3578888999999999999999999 33344556665655543

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=86.34  E-value=0.77  Score=29.88  Aligned_cols=39  Identities=28%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK   86 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k   86 (154)
                      -++++.-.|-|+||.|..+++|++| |-.+-+.|.|-+.+
T Consensus        43 gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~~~   81 (85)
T 2wyq_A           43 AFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVVMVTK   81 (85)
T ss_dssp             TCCGGGEEEEETTEECCTTSBGGGG-CCCTTSEEEEEEC-
T ss_pred             CCCHHHeEEEECCEECcCCCCHHHc-CCCCCCEEEEEEcC
Confidence            3578888999999999999999999 44445566665543

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=86.29  E-value=0.98  Score=33.17  Aligned_cols=45  Identities=9%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             ccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCCCC
Q psy6853          48 IEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGAPS   93 (154)
Q Consensus        48 i~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~GaP~   93 (154)
                      +.++.-.|-|+||.|..+.+|++| |-.+..-++|=|--+..+|++
T Consensus        60 ~p~~qqrLIy~GK~LeD~~TL~~y-~I~~~~~~tlhLvlr~~~~~~  104 (116)
T 1wgh_A           60 SSPNILRLIYQGRFLHGNVTLGAL-KLPFGKTTVMHLVARETLPEP  104 (116)
T ss_dssp             CCTTTEEEEETTEEECSSCBTTTT-TCCSSCEEEEEEEECSSCSSS
T ss_pred             CChHHEEEEECCcCCCCCCcHHHc-CCCCCCceEEEEEccCCCCCC
Confidence            468899999999999999999999 222222244445445555543

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=86.07  E-value=1  Score=29.55  Aligned_cols=42  Identities=14%  Similarity=0.093  Sum_probs=31.8

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS   89 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~   89 (154)
                      -++++.-.|.|.||.|..+++|++| |-.+-+.|.+-+..+|.
T Consensus        42 gi~~~~qrL~~~Gk~L~d~~tL~~~-~i~~g~~i~l~~~~~GG   83 (87)
T 1wh3_A           42 GLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLILSKKKGSG   83 (87)
T ss_dssp             CCCTTTEEEEETTEECCSSSBHHHH-TCCTTEEEEEEECSCCC
T ss_pred             CCChHHEEEEECCEEccCCCCHHHC-CCCCCCEEEEEEeccCC
Confidence            3678889999999999999999999 33344566666665553

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=86.01  E-value=0.26  Score=31.44  Aligned_cols=57  Identities=12%  Similarity=0.185  Sum_probs=36.9

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI   84 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl   84 (154)
                      ..+++.+.|.-       |...-+...-++++.-.|-|.||.|..+++|++| |-.+-+.|.|..
T Consensus        18 ~~v~~~~tV~~-------LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~-~i~~g~~i~l~~   74 (77)
T 2bwf_A           18 VNVAPESTVLQ-------FKEAINKANGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHLVK   74 (77)
T ss_dssp             EEECTTCBHHH-------HHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEE
T ss_pred             EEECCCCcHHH-------HHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHc-CCCCCCEEEEEE
Confidence            34556666642       2222222334578888999999999999999999 333445676654

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=85.95  E-value=0.35  Score=34.03  Aligned_cols=46  Identities=4%  Similarity=-0.049  Sum_probs=34.2

Q ss_pred             ccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          44 SKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        44 ~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      ...-|+++.-.|.|.||.|..+++|++| |-.+-+.|.|-+..+|..
T Consensus        63 ~~~gip~~~QrL~~~Gk~L~D~~tL~~y-~I~~g~~l~l~~r~~GGk  108 (111)
T 1we6_A           63 GEIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLRERSGP  108 (111)
T ss_dssp             HHTTCCTTTSEEECSSSBCCTTSBTTTT-TCSSSCEEEEECSSCCSS
T ss_pred             HHHCCCHHHeEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEcCCCC
Confidence            3344688889999999999999999999 223445677767667653

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=85.43  E-value=0.41  Score=34.22  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=41.5

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      ..+++.+.|...-+--+.       ..-++++.-.|-|+||.|..+++|++| |-.+-+.|.|=+..+|..
T Consensus        24 l~v~~~~TV~~LK~~I~~-------~~gip~~~qrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~~~~GG~   86 (114)
T 2kdi_A           24 LEVESSDTIDNVKSKIQD-------KEGIPPDQQRLIWAGKQLEDGRTLSDY-NIQRESTLHLVLRLRGGS   86 (114)
T ss_dssp             EECCTTCBHHHHHHHHHH-------HHCCCGGGEEEEETTEECCTTCBTTTT-TCCSSCEEEEEECCCSSC
T ss_pred             EEECCCCcHHHHHHHHHH-------HHCcChHHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEEcCCCc
Confidence            345666666432222222       233578888999999999999999999 333445676666666643

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=85.34  E-value=0.36  Score=33.17  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      -++++.-.|.|.||.|..+++|++| |-.+-+.|.+=+.-+|
T Consensus        57 gip~~~qrLi~~Gk~L~D~~tL~~~-~i~~g~~i~l~~rl~G   97 (98)
T 4hcn_B           57 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG   97 (98)
T ss_dssp             CCCGGGCEEEETTEECCTTCBSGGG-TCCTTEEEEEECBCSC
T ss_pred             CCChhHEEEEECCEECCCCCcHHHC-CCCCCCEEEEEEecCC
Confidence            3677888999999999999999999 3344455655555444

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=85.01  E-value=0.88  Score=32.19  Aligned_cols=45  Identities=4%  Similarity=0.001  Sum_probs=32.8

Q ss_pred             cccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSG   90 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~G   90 (154)
                      ..-|+++.-.|-|+|+.|..+++|++|-=+ +-+.|.+=+.-+|..
T Consensus        68 ~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~-~g~~i~lv~rl~GGk  112 (115)
T 1we7_A           68 ATGMPAGKQKLQYEGIFIKDSNSLAYYNMA-SGAVIHLALKERSGP  112 (115)
T ss_dssp             HSSCCTTTEEEEETTEEECTTSBHHHHTCC-SSCEEEEEECCCSCC
T ss_pred             HHCCChHHEEEEECCEECCCCCCHHHCCCC-CCCEEEEEEEcCCCC
Confidence            344688899999999999999999999222 334566656666643

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=84.60  E-value=0.49  Score=31.81  Aligned_cols=37  Identities=27%  Similarity=0.491  Sum_probs=27.4

Q ss_pred             ccccCCceeEeeecccccccchhhhh-cCCCccceEEE
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIV   82 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiiv   82 (154)
                      .-++++.-.|.|.||.|..+++|++| +..+..--+++
T Consensus        51 ~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~   88 (91)
T 3v6c_B           51 EGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL   88 (91)
T ss_dssp             HCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred             hCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence            34577888999999999999999999 54444333333

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=84.31  E-value=0.52  Score=36.00  Aligned_cols=62  Identities=21%  Similarity=0.311  Sum_probs=40.1

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS   89 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~   89 (154)
                      ..+++.|.|.-.=+--       +...-++++.-.|.|+||.|..+++|++| |-.+-+.|.+=+..+|.
T Consensus        15 l~v~~~~TV~~LK~~I-------~~~~gip~~~QrLi~~Gk~L~D~~tL~~y-~I~~gstI~Lvlrl~GG   76 (169)
T 3l0w_B           15 LEVESSDTIDNVKSKI-------QDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG   76 (169)
T ss_dssp             EECCTTCBHHHHHHHH-------HHHHCCCTTTEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECCCC-
T ss_pred             EEeCCCCCHHHHHHHH-------HHHHCcCHHHEEEEECCccccCcCcHHHc-CCCCCCEEEEEEEeccc
Confidence            3566677664222222       22334688889999999999999999999 44444555555555553

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=84.29  E-value=0.24  Score=32.02  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.0

Q ss_pred             ccccCCceeEeeecccccccchhhhh
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF   71 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY   71 (154)
                      .-++++.-.|.|+||.|..+++|++|
T Consensus        38 ~gip~~~qrL~~~g~~L~d~~tL~~~   63 (78)
T 2faz_A           38 FHVEPGLQRLFYRGKQMEDGHTLFDY   63 (78)
T ss_dssp             HCCCGGGEEEEETTEECCTTCBTTTT
T ss_pred             HCcChhhEEEEECCEECCCCCCHHHc
Confidence            34578888999999999999999999

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=83.40  E-value=0.66  Score=32.94  Aligned_cols=41  Identities=22%  Similarity=0.365  Sum_probs=32.4

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      -++++.-.|-|.||.|..+++|++| |-.+-+.|.+-+..+|
T Consensus       111 gi~~~~qrL~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r~~G  151 (152)
T 3b08_A          111 GIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG  151 (152)
T ss_dssp             CCCGGGEEEEETTEECCTTSBTGGG-TCCTTCEEEEEECCCC
T ss_pred             CcChhhEEEEECCEECCCCCCHHHc-CCCCCCEEEEEEecCC
Confidence            4678888999999999999999999 4445556777666665

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=83.38  E-value=1  Score=31.84  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=31.3

Q ss_pred             cccCCceeEeeecccccccchhhhhcCC-CccceEEEEecc
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGK-NEKCKAIVKISK   86 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGk-NEKTKiivKl~k   86 (154)
                      -++++.-.|.|+||.|..+++|++| |- .+...|++=+++
T Consensus        57 gip~~~QrLi~~Gk~L~D~~tL~dy-~I~~~g~ti~lmvsk   96 (98)
T 4a20_A           57 ASHISEIKLLLKGKVLHDNLFLSDL-KVTPANSTITVMIKP   96 (98)
T ss_dssp             CSCGGGEEEEETTEEECTTCBGGGS-CCBTTBCEEEEEECC
T ss_pred             CCChhhEEEEECCEECcCcCCHHHc-CcCCCCCEEEEEEeC
Confidence            4688889999999999999999999 44 456667766654

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=82.98  E-value=1.3  Score=30.46  Aligned_cols=42  Identities=10%  Similarity=0.177  Sum_probs=31.5

Q ss_pred             cccccCCceeEeeecccccccchhhhh-cCCCccceEEEEecccC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKISKIG   88 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl~k~g   88 (154)
                      .+-|+++.-.|.|+|+.|..+++|++| +..+  +.|.+=+..+|
T Consensus        54 ~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g--~~I~l~~~~~G   96 (97)
T 1wyw_B           54 RQGVPMNSLRFLFEGQRIADNHTPKELGMEEE--DVIEVYQEQTG   96 (97)
T ss_dssp             HHTCCGGGEEEEETTEECCTTCCHHHHTCCTT--CEEEEEESSSC
T ss_pred             HHCCChhhEEEEECCeEcCCCCCHHHCCCCCC--CEEEEEEecCC
Confidence            344678889999999999999999999 4433  34555555555

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=82.89  E-value=0.92  Score=31.56  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEEEecc
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISK   86 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k   86 (154)
                      .-++++.-.|-|.||.|..+++|.+| |-.+-+.|.|=+..
T Consensus        55 ~gip~~~QrLi~~Gk~L~D~~tL~~y-gI~~gstI~l~~r~   94 (100)
T 1yqb_A           55 FKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIKR   94 (100)
T ss_dssp             HTCCGGGEEEEETTEECCTTSBHHHH-TCCTTCEEEEEECC
T ss_pred             HCcChhhEEEEECCEECCCcCcHHHC-CCCCCCEEEEEEcC
Confidence            34578888999999999999999999 33334455544433

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=81.80  E-value=0.41  Score=32.39  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=27.5

Q ss_pred             ccccCCceeEeeeccc-ccccchhhhh-cCCCccceEEEEe
Q psy6853          46 EVIEPSMGALWFAGKA-MHRDKFVRDF-LGKNEKCKAIVKI   84 (154)
Q Consensus        46 evi~~~~a~LW~aGKe-l~r~k~l~dY-iGkNEKTKiivKl   84 (154)
                      +-++++.-.|-|+||. |..+++|++| +.  +-+.|.+-+
T Consensus        44 ~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~--~gs~i~lv~   82 (84)
T 2kk8_A           44 QHIPVSKQTLIVDGIVILREDLTVEQCQIV--PTSDIQLEV   82 (84)
T ss_dssp             HTCCGGGEEEEETTEECCCSSSBHHHHTCC--TTSCEEEEE
T ss_pred             HCcChHHEEEEECCEEecCCcCCHHHcCCC--CCCEEEEEE
Confidence            3367888899999999 9999999999 43  333454433

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=81.70  E-value=0.28  Score=37.39  Aligned_cols=66  Identities=21%  Similarity=0.382  Sum_probs=0.0

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA   91 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga   91 (154)
                      |+..+++.|.|.       +|-..-+..+-|+++.-.|.|+|+.|..+.+|++| |-.+-+.|.+=+..+|.|.
T Consensus        13 ~~l~V~~~~TV~-------~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy-gI~~gstL~Lvlrl~GGgK   78 (152)
T 3u5c_f           13 ITLEVESSDTID-------NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGGGK   78 (152)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             EEEEECCCCCHH-------HHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHc-CCCCCCEEEEEeeccCCCc
Confidence            344566666664       33333333444688888999999999999999999 3334445655566666553

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.66  E-value=0.33  Score=31.23  Aligned_cols=31  Identities=29%  Similarity=0.443  Sum_probs=25.3

Q ss_pred             ccccCCceeEeeecccccccchhhhh-cCCCc
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDF-LGKNE   76 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dY-iGkNE   76 (154)
                      .-++++.-.|-|.||.|..+++|.+| +..+.
T Consensus        41 ~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~   72 (81)
T 2dzi_A           41 LNVPVRQQRLLFKGKALADGKRLSDYSIGPNS   72 (81)
T ss_dssp             TCCCTTTCEEEETTEECCTTSBGGGGTCCSSB
T ss_pred             HCcCHHHEEEEECCeECCCCCcHHHcCCCCCC
Confidence            34678888999999999999999999 54444

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=80.97  E-value=0.33  Score=35.12  Aligned_cols=64  Identities=20%  Similarity=0.362  Sum_probs=0.0

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCC
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGS   89 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~   89 (154)
                      |...+++.+.|.       +|-..-+...-++++.-.|.|.|+.|..+++|++| |-.+-+.|.+=+..+|.
T Consensus        13 ~~l~v~~~~TV~-------~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~-~I~~gsti~l~~rl~GG   76 (128)
T 3u5e_m           13 ITLEVESSDTID-------NVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRGG   76 (128)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             EEEEeCCCCCHH-------HHHHHHHHHhCcChHHEEEEECCEECCCCCchhhh-ccCCCCEEEEEEEcCCC
Confidence            344566666664       33333333445678888999999999999999999 33334445444444544

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=80.23  E-value=2.6  Score=29.40  Aligned_cols=37  Identities=11%  Similarity=0.078  Sum_probs=27.0

Q ss_pred             cccCCc-eeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853          47 VIEPSM-GALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI   84 (154)
Q Consensus        47 vi~~~~-a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl   84 (154)
                      -+.++. -.|.|+||.|..+++|.+|-=+ +-+.|.+=+
T Consensus        61 gip~~~~qrLi~~Gk~L~D~~tL~~y~i~-~g~~i~lv~   98 (107)
T 1x1m_A           61 SVPDPELIDLIYCGRKLKDDQTLDFYGIQ-PGSTVHVLR   98 (107)
T ss_dssp             TCCCSSSEEEEETTEECCTTCBHHHHTCC-TTCEEEEEE
T ss_pred             CCChhhcEEEEECCeECCCCCcHHHcCCC-CCCEEEEEe
Confidence            457778 8899999999999999999322 334454433

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=80.08  E-value=0.73  Score=32.22  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=27.6

Q ss_pred             ccccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853          46 EVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV   82 (154)
Q Consensus        46 evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv   82 (154)
                      .-++++.-.|.|+||.|..+++|++| |-.+-+.|.+
T Consensus        61 ~gip~~~QrLi~~Gk~L~D~~tL~~~-gI~~g~tI~l   96 (101)
T 3m63_B           61 NGIPVANQRLIYSGKILKDDQTVESY-HIQDGHSVHL   96 (101)
T ss_dssp             HSCCSTTCCEEETTEECCTTSBTTTT-TCCTTEEEEE
T ss_pred             HCcChHHEEEEECCEECCCcCcHHHC-CCCCCCEEEE
Confidence            34578888999999999999999999 3334445544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	94.67
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	93.37
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	92.97
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	92.35
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	91.93
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	91.91
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	89.97
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	89.53
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	89.36
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	88.61
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	88.12
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	88.06
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	87.08
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	86.25
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	86.22
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	86.11
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	85.79
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	82.59
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	80.94

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0086  Score=38.65  Aligned_cols=61  Identities=21%  Similarity=0.364  Sum_probs=42.2

Q ss_pred             eecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853          17 VYPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV   82 (154)
Q Consensus        17 vyPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv   82 (154)
                      .|+..++|.|.|.-.=..-+...|.    +.++++.-.|-|+||.|..+++|++| |-.+.+.|+|
T Consensus        14 ~~~l~v~~~~TV~~lK~~i~~~~g~----~~i~~~~qrLi~~Gk~L~D~~tL~~y-~I~~~s~i~~   74 (77)
T d1oqya4          14 TFKIRMEPDETVKVLKEKIEAEKGR----DAFPVAGQKLIYAGKILSDDVPIRDY-RIDEKNFVVV   74 (77)
T ss_dssp             EEEECCCTTCBHHHHHHHHHHHTCS----SSCCSTEEEEESSSSEECSSSBTTTT-CCCTTSCEEE
T ss_pred             EEEEEECCCCcHHHHHHHHHHhcCC----CCCChHHEEeEECCcCccCCCcHHHc-CCCCCCEEEE
Confidence            3556677888775332222222222    34788899999999999999999999 6666666765

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.37  E-value=0.0096  Score=37.95  Aligned_cols=58  Identities=22%  Similarity=0.388  Sum_probs=37.7

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEE
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIV   82 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiiv   82 (154)
                      |+....|.|.|.       +|...-+...-++++.-.|-|+||+|..+.+|++| +..+..--+++
T Consensus        13 ~~l~V~~~~tV~-------~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lvl   71 (73)
T d1bt0a_          13 IEIDIEPTDTID-------RIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVL   71 (73)
T ss_dssp             EEEECCTTCBHH-------HHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred             EEEEECCCCcHH-------HHHHHHHHHhCCChHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEe
Confidence            344566677764       22222233344688889999999999999999999 44444333333

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.97  E-value=0.023  Score=36.90  Aligned_cols=57  Identities=16%  Similarity=0.213  Sum_probs=38.2

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEE
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAI   81 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKii   81 (154)
                      ||..+.+.|.|.-.-+--++.       +-|+++.-.|-|+||+|..+.+|++| |..+..--++
T Consensus        15 ~~l~v~~~~tV~~lK~~i~~~-------~gip~~~qrLi~~Gk~L~d~~tL~~y~I~~~sti~lv   72 (78)
T d2zeqa1          15 FPVEVDSDTSILQLKEVVAKR-------QGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIV   72 (78)
T ss_dssp             EEEEECTTCBHHHHHHHHHHH-------HTCCGGGEEEEETTEEECTTCBGGGSSCCTTCEEEEE
T ss_pred             EEEEEcccccHHHHHHHHHHH-------HCcChhHeEEEEeeeEcCCCCCHHHcCCCCCCEEEEE
Confidence            345566677775333333333       34578888999999999999999999 6555433333

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.35  E-value=0.013  Score=37.40  Aligned_cols=58  Identities=12%  Similarity=0.147  Sum_probs=38.2

Q ss_pred             cCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEEE
Q psy6853          19 PMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVK   83 (154)
Q Consensus        19 PmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivK   83 (154)
                      +..+.+.|.|.       +|...-+..+-++++.-.|-|+||+|..+++|++| +..+.---++++
T Consensus        17 ~l~v~~~~tV~-------~lK~~I~~~~gi~~~~qrL~~~gk~L~d~~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2          17 TYEVRLTQTVA-------HLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             EEEECTTSBHH-------HHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred             EEEECCCCcHH-------HHHHHHHHHhcCChhHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence            34455666663       22222233345688889999999999999999999 666554444444

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.04  Score=36.17  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=29.0

Q ss_pred             ccccccCCceeEeeecccccccchhhhhcCCCccceEEE
Q psy6853          44 SKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIV   82 (154)
Q Consensus        44 ~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiiv   82 (154)
                      ..+-|+++.-.|-|+||+|..+++|+|| |-.+-+.|.+
T Consensus        39 ~~~gip~~~qrLi~~Gk~L~d~~tL~~y-~I~~~stl~l   76 (87)
T d1wh3a_          39 DQQGLPKKQQQLEFQGQVLQDWLGLGIY-GIQDSDTLIL   76 (87)
T ss_dssp             HHTCCCTTTEEEEETTEECCSSSBHHHH-TCCTTEEEEE
T ss_pred             HHHCcChHHeEEEeeceEcCCCCcHHHc-CCCCCCEEEE
Confidence            3445688999999999999999999999 3334444444

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.91  E-value=0.025  Score=38.73  Aligned_cols=55  Identities=20%  Similarity=0.184  Sum_probs=37.6

Q ss_pred             ccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccCCCC
Q psy6853          36 EDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIGSGA   91 (154)
Q Consensus        36 edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g~Ga   91 (154)
                      ++|-..-+...-++++.-.|-|+||.|..+++|.+| |-.+-++|+|=..++.++|
T Consensus        43 ~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~~tL~~~-gI~~~s~i~vi~~~~~~~p   97 (100)
T d1wjua_          43 RELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQ-GVAHNVKAMVLELKQSSGP   97 (100)
T ss_dssp             HHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHH-TCCSSEEEEEECCCCCCCS
T ss_pred             HHHHHHHHHHHCCCCeeEEEEEcccCcCCCcCHHHc-CCCCCCEEEEEEcCCCCCC
Confidence            444444455566789999999999999999999999 4444445543333444444

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.21  Score=33.27  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=27.9

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccc
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKC   78 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKT   78 (154)
                      .+.++.-.|-|+||.|.++.+|+||.++.+..
T Consensus        46 ~~~~~~qrLIy~Gk~L~D~~~L~d~~~~~~~~   77 (93)
T d1wgda_          46 RPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKR   77 (93)
T ss_dssp             CCCTTTCEEEETTEECCSSSCHHHHSCSSSCS
T ss_pred             CCChHHEEEEECCeEccCCCCHHHhCcccCCC
Confidence            46788899999999999999999998876664

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.13  Score=32.59  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=40.2

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      |+..+.+.|.|.-.-+--       +...-++++.-.|-|.||.|..+.+|++| |-.+-+.|.+=+.-+|
T Consensus        13 ~~l~v~~~~tV~~lK~~I-------~~~~gi~~~~qrL~~~Gk~L~d~~tL~~y-~i~~~s~I~L~~rlrg   75 (76)
T d1ogwa_          13 ITLEVEPSDTIENVKAKI-------QDKEGIPPDQQRLIFAGKQLEDGRTLSDY-NIQKESTLHLVLRLRG   75 (76)
T ss_dssp             EEEECCTTSBHHHHHHHH-------HHHHCCCGGGEEEEETTEECCTTSBGGGG-TCCTTCEEEEEECTTC
T ss_pred             EEEEECCCCcHHHHHHhh-------hhhcCCChHHEEeEECCeEcCCCCCHHHc-CCCCCCEEEEEEecCC
Confidence            344566777775332222       22334578888999999999999999999 3334455554444444

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.36  E-value=0.15  Score=33.08  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             cccccccCCceeEeeecccccccchhhhhcCCCccceEEEEec
Q psy6853          43 ASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKIS   85 (154)
Q Consensus        43 a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~   85 (154)
                      +...-++++.-.|.|+||+|..+.+|++| |-.+-+.|.+-+.
T Consensus        37 ~~~~gi~~~~qrL~~~Gk~L~D~~tL~~y-~i~~gsti~lv~r   78 (84)
T d1yqba1          37 SQRFKAHPDQLVLIFAGKILKDPDSLAQC-GVRDGLTVHLVIK   78 (84)
T ss_dssp             HHHHTCCGGGEEEEETTEECCTTSBHHHH-TCCTTCEEEEEEC
T ss_pred             HHHHCcCchhEEEEEeeeeccccCcHHHc-CCCCCCEEEEEEC
Confidence            44556688999999999999999999999 4455555554443

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.13  Score=33.06  Aligned_cols=42  Identities=21%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             cccccccCCceeEeeecccccccchhhhh-cCCCccceEEEEe
Q psy6853          43 ASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIVKI   84 (154)
Q Consensus        43 a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiivKl   84 (154)
                      +..+-|+++.-.|-|+||+|..+++|.+| +..+.---+++++
T Consensus        33 ~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~~sti~lv~r~   75 (76)
T d2faza1          33 QELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ   75 (76)
T ss_dssp             HHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred             HHHHCcChHHeEEEEeeEeccCCCcHHHcCCCCCCEEEEEEEc
Confidence            33445688899999999999999999999 6666544455443

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.12  E-value=0.23  Score=34.40  Aligned_cols=43  Identities=5%  Similarity=-0.046  Sum_probs=31.9

Q ss_pred             cccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      ..-++++.-.|.|+||.|..+.+|.+| |-.+-+.|.+-|.-||
T Consensus        64 ~~gip~~~QrLi~~Gk~L~D~~tL~~y-nI~~gsti~L~lr~rG  106 (111)
T d1we6a_          64 EIQIPANKQKLSGKAGFLKDNMSLAHY-NVGAGEILTLSLRERS  106 (111)
T ss_dssp             HTTCCTTTSEEECSSSBCCTTSBTTTT-TCSSSCEEEEECSSCC
T ss_pred             HHCCCccceEEEEeeEEccccCCHHHc-CCCCCCEEEEEeeCCC
Confidence            344688999999999999999999999 4444445554444454

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.14  Score=33.74  Aligned_cols=31  Identities=6%  Similarity=0.153  Sum_probs=25.9

Q ss_pred             cccccCCceeEeeecccccccchhhhh-cCCC
Q psy6853          45 KEVIEPSMGALWFAGKAMHRDKFVRDF-LGKN   75 (154)
Q Consensus        45 ~evi~~~~a~LW~aGKel~r~k~l~dY-iGkN   75 (154)
                      ..-++++.-.|=|+||.|..+++|+|| |+.+
T Consensus        44 ~~~ip~~~q~Li~~Gk~L~D~~tL~dY~I~~g   75 (86)
T d1zkha1          44 ATGMPAGKQKLQYEGIFIKDSNSLAYYNMANG   75 (86)
T ss_dssp             HTCCCTTTEEEEETTEEECTTSBHHHHTCCTT
T ss_pred             hhcCChHHEEEEeCCcCcCCCCCHHHcCCCCC
Confidence            445688999999999999999999999 4433

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.08  E-value=0.29  Score=33.78  Aligned_cols=32  Identities=9%  Similarity=0.093  Sum_probs=27.4

Q ss_pred             ccccccCCceeEeeecccccccchhhhh-cCCC
Q psy6853          44 SKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKN   75 (154)
Q Consensus        44 ~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkN   75 (154)
                      ..+-|.++.-.|.|+||+|..+++|+|| |+.|
T Consensus        32 ~~~gip~~~QrLi~~Gk~L~D~~TL~dYgI~~~   64 (103)
T d2c9wb1          32 GILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQ   64 (103)
T ss_dssp             HHHCCCGGGEEEEETTEECCTTSBHHHHTCCTT
T ss_pred             HHhCCCcccEEEEECCEEcCCCCCHHHcCCCcc
Confidence            3445688899999999999999999999 7765

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.25  E-value=0.15  Score=32.98  Aligned_cols=38  Identities=13%  Similarity=0.122  Sum_probs=29.5

Q ss_pred             cccccccCCceeEeeecccccccchhhhhcCCCccceEE
Q psy6853          43 ASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAI   81 (154)
Q Consensus        43 a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKii   81 (154)
                      +...-++++.-.|.|+||.|..+++|++| |-.+-+.|.
T Consensus        40 ~~~~~v~~~~qrL~f~Gk~L~d~~tL~~~-gI~~gs~I~   77 (83)
T d1wx8a1          40 SKYLHCNADRLVLIFTGKILRDQDILSQR-GILDGSTVH   77 (83)
T ss_dssp             HHHTCSCTTTBCCEETTEECCTTSCHHHH-TCCTTEEEE
T ss_pred             HHHhCCChhHEEEEEEhhccccCCcHHHc-CCCCCCEEE
Confidence            33445588889999999999999999999 555555554

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.22  E-value=0.073  Score=33.90  Aligned_cols=53  Identities=9%  Similarity=0.081  Sum_probs=36.1

Q ss_pred             CCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceE
Q psy6853          20 MNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKA   80 (154)
Q Consensus        20 mgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKi   80 (154)
                      ..+.|.|.|.-.       ...-+...-++++.-.|-|+||.|..+.+|++| |-.+-++|
T Consensus        16 v~V~~~~tV~~l-------K~~I~~~~~i~~~~q~Li~~Gk~L~d~~tL~~y-~I~~gstl   68 (73)
T d1m94a_          16 VKCLAEDSVGDF-------KKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDY-EVHDQTNL   68 (73)
T ss_dssp             EEECTTSBHHHH-------HHHHHHHHCCTTTSEEEESSSCEECTTSBHHHH-TCCTTEEE
T ss_pred             EEECCcCcHHHH-------HHHHHHhhcccccEEEEEEEeEEecccCcHHHc-CCCCCCEE
Confidence            345566666432       222233344689999999999999999999999 44444444

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=86.11  E-value=0.31  Score=31.09  Aligned_cols=59  Identities=17%  Similarity=0.216  Sum_probs=42.6

Q ss_pred             CCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhhcCCCccceEEEEecccC
Q psy6853          22 LPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKISKIG   88 (154)
Q Consensus        22 LP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl~k~g   88 (154)
                      +.+++|++-.++--       +...-++++...|+|.|+.|..+.++.+| |-++-..|-|=+.++|
T Consensus        20 v~~~~~~~~l~~~~-------~~~~~i~~~~~~l~f~G~~l~~~~T~~~~-~i~dgd~I~v~~~q~G   78 (79)
T d1euvb_          20 IKKTTPLRRLMEAF-------AKRQGKEMDSLRFLYDGIRIQADQTPEDL-DMEDNDIIEAHREQIG   78 (79)
T ss_dssp             EETTSCTHHHHHHH-------HHHTTCCGGGEEEEETTEECCTTCCTTTT-TCCTTEEEEEEECCBC
T ss_pred             ECCCCcHHHHHHHH-------HHHhCCChHhEEEEECCEEeCCCCCHHHC-CCCCCCEEEEEEeccC
Confidence            45566776555432       33445688999999999999999999999 6666666666666665

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.58  Score=30.54  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=28.6

Q ss_pred             cccCCceeEeeecccccccchhhhhcCCCccceEEEEe
Q psy6853          47 VIEPSMGALWFAGKAMHRDKFVRDFLGKNEKCKAIVKI   84 (154)
Q Consensus        47 vi~~~~a~LW~aGKel~r~k~l~dYiGkNEKTKiivKl   84 (154)
                      .|+++...|-|+||.|.++++|++| |-.+...|++=+
T Consensus        38 ~i~~~~qrLi~~Gk~L~d~~tL~~y-~I~~~s~i~lv~   74 (95)
T d1uela_          38 AFPVAGQKLIYAGKILNDDTALKEY-KIDEKNFVVVMV   74 (95)
T ss_dssp             TCCTTTEEEEETTEECCTTSBGGGG-TCCSSSEEEEEE
T ss_pred             CCCccceEEEECCeEccCCCcHHHc-CCCCCCEEEEEE
Confidence            4678889999999999999999999 444445555433

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.59  E-value=0.26  Score=32.84  Aligned_cols=55  Identities=20%  Similarity=0.332  Sum_probs=38.2

Q ss_pred             ecCCCCCCchhhhhhcccccccCcccccccccCCceeEeeecccccccchhhhh-cCCCccceEEE
Q psy6853          18 YPMNLPTHDPIRLEFENREDLTGTQASKEVIEPSMGALWFAGKAMHRDKFVRDF-LGKNEKCKAIV   82 (154)
Q Consensus        18 yPmgLP~~Dpir~elen~edl~gt~a~~evi~~~~a~LW~aGKel~r~k~l~dY-iGkNEKTKiiv   82 (154)
                      |+..+++.+.|.-.=+--+++.|.       +++.-.|.|.|+ |..+++|++| |..+  ++|++
T Consensus        29 ~~i~v~~~~TV~~LK~~I~~~tgv-------p~~~q~Li~~g~-l~D~~tL~~~~I~~g--s~i~l   84 (95)
T d1v86a_          29 HDVKVPLDSTGSELKQKIHSITGL-------PPAMQKVMYKGL-VPEDKTLREIKVTSG--AKIMV   84 (95)
T ss_dssp             EEEEECTTSBHHHHHHHHHHHHCS-------CSTTCCCBSSSB-CCSSSBHHHHCCCTT--EEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHHhCC-------ChhHEEEEeccc-ccCCCcHHHCCCCCC--CEEEE
Confidence            566778888886444444555554       667777889997 8899999999 5444  44554

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.94  E-value=0.41  Score=32.44  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             cCCceeEeeeccccccc-chhhhh-cCCCccceEEEEecccCCCCC
Q psy6853          49 EPSMGALWFAGKAMHRD-KFVRDF-LGKNEKCKAIVKISKIGSGAP   92 (154)
Q Consensus        49 ~~~~a~LW~aGKel~r~-k~l~dY-iGkNEKTKiivKl~k~g~GaP   92 (154)
                      .+...+|-|.|+.|..+ .+|++| |..+..--+|+++. +..||.
T Consensus        59 ~~~~~~Li~~G~~L~d~~~tL~~~gI~~g~~l~lv~r~~-~~~gps  103 (105)
T d1v2ya_          59 VWRTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLG-QKSGPS  103 (105)
T ss_dssp             HHTTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECSC-SCCCCC
T ss_pred             cccceEEEECCEECcccCCCHHHcCCCCCCEEEEEEecC-CCCCCC
Confidence            34567899999999886 589999 87777666665554 344443