Psyllid ID: psy6873

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
MDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSGAYP
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHccccccEEEEccEEEEEccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHccHHHHHHHcccccccccHHHHHHHHcccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEccccccccHHHHEEEEccccEEccccccccccccccccHHcccccHHHHHcccccccccc
Coil and Loop (DISEMBL)
MDVAQLRDlknevdidehliplEELYsildthpdrglsELEVKRRLekdgpnslpqkyrinnVYILVGYIFRGFSALLWFGALLSFLAYLLEAetneekpqdnlWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAetneekpqdnlWLGIILALTCIVTGSLlsvqqkysprtpwdllnagvryipsrypksgayp
Flexible Loop (DISEMBL)
mdvaqlrdlknevdidehLIPLEELysildthpdrgLSELEVKRrlekdgpnslpqkyriNNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYsprtpwdllnagvryipsrypksgayp
Low Complexity Region (SEG)
MDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSGAYP
Disordered region (IsUnstruct)
************VDIDEHLIPLEELYSILDT*************************KYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP**********
Disordered Region (DISOPRED)
****Q*R*LKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRY*******
Disordered Region (DISEMBL)
MDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSGAYP
Disordered Region (DISPRO)
*DVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTG*************P**LLNAGVRYIPSRYPKS****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSGAYP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
P13607	1041	Sodium/potassium-transpor	no	N/A	0.570	0.113	0.466	3e-23
P28774	1004	Sodium/potassium-transpor	N/A	N/A	0.565	0.116	0.440	2e-20
Q9YH26	1023	Sodium/potassium-transpor	N/A	N/A	0.840	0.170	0.343	9e-19
Q6RWA9	1014	Sodium/potassium-transpor	N/A	N/A	0.826	0.168	0.326	2e-18
P05023	1023	Sodium/potassium-transpor	yes	N/A	0.855	0.173	0.318	6e-18
P04074	1021	Sodium/potassium-transpor	N/A	N/A	0.874	0.177	0.320	6e-18
P50997	1021	Sodium/potassium-transpor	yes	N/A	0.874	0.177	0.320	7e-18
Q5RDR3	1023	Sodium/potassium-transpor	yes	N/A	0.855	0.173	0.318	7e-18
Q08DA1	1021	Sodium/potassium-transpor	yes	N/A	0.874	0.177	0.320	9e-18
P05024	1021	Sodium/potassium-transpor	yes	N/A	0.855	0.173	0.318	1e-17

>sp|P13607|ATNA_DROME Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster GN=Atpalpha PE=1 SV=3

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 72/118 (61%)

Query: 5   QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVY 64
            L DLK E+DID H I  EELY    THP+ GLS  + K  LE+DGPN+L    +     
Sbjct: 49  NLDDLKQELDIDFHKISPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWV 108

Query: 65  ILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
                +F GF+ LLW GA+L F+AY ++A T+EE   DNL+LGI+L+   IVT +  Y
Sbjct: 109 KFCKNLFGGFAMLLWIGAILCFVAYSIQASTSEEPADDNLYLGIVLSAVVIVTGIFSY 166

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 9

>sp|P28774|AT1B_ARTSF Sodium/potassium-transporting ATPase subunit alpha-B OS=Artemia franciscana PE=2 SV=1

 Score = 99.0 bits (245), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 73/118 (61%), Gaps = 1/118 (0%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L +LK E+DID H IP+EE Y  L ++P+ GL+  + +  +E+DGPN L           
Sbjct: 12  LNELKKELDIDFHKIPIEECYQRLGSNPETGLTNAQARSNIERDGPNCLTPPKTTPEWIK 71

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GF+ LLW GA+L FLAY +EA + NE+  +DNL+LGI+LA   IVT +  Y
Sbjct: 72  FCKNLFGGFALLLWTGAILCFLAYGIEASSGNEDMLKDNLYLGIVLATVVIVTGIFSY 129

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q9YH26|AT1A1_OREMO Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oreochromis mossambicus GN=atp1a1 PE=2 SV=2

 Score = 93.6 bits (231), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 93/198 (46%), Gaps = 24/198 (12%)

Query: 9   LKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVG 68
           LK EVD+D+H + L+EL+    T   RGLS    K  L +DGPN+L              
Sbjct: 35  LKKEVDLDDHKLTLDELHRKYGTDLTRGLSSSRAKEILARDGPNALTPPPTTPEWVKFCK 94

Query: 69  YIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY------ 122
            +F GFS LLW GA+L FLAY ++A + +E   DNL+LGI+L+   I+T    Y      
Sbjct: 95  QLFGGFSMLLWIGAILCFLAYGIQAASEDEPANDNLYLGIVLSAVVIITGCFSYYQEAKS 154

Query: 123 --IFRGFSALLWFGAL-------------LSFLAYLLEAETNEEKPQDNLWLGIILALTC 167
             I   F  L+   AL                L  L+E +  +  P D   L II A  C
Sbjct: 155 SKIMESFKNLVPRQALGIRDGEKKNINAEEVVLGDLVEVKGGDRIPAD---LRIISAHGC 211

Query: 168 IVTGSLLSVQQKYSPRTP 185
            V  S L+ + +   R+P
Sbjct: 212 KVDNSSLTGESEPQTRSP 229

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Oreochromis mossambicus (taxid: 8127)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q6RWA9|AT1A_TAESO Sodium/potassium-transporting ATPase subunit alpha OS=Taenia solium PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 93/187 (49%), Gaps = 16/187 (8%)

Query: 5   QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVY 64
            L +LK E+ +DEH I L+ELY+ L T+PD GL+  + K RL++DGPN+L          
Sbjct: 22  DLNELKQELAMDEHQISLDELYARLGTNPDTGLTSEQAKTRLDRDGPNALTPPKTTPEWV 81

Query: 65  ILVGYIFRGFSALLWFGALLSFLAYLLEA-ETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
                +F GFS LLW GA+L F+A+ +      E    DNL+LGI+LA   ++T    Y 
Sbjct: 82  KFCKNMFGGFSLLLWIGAVLCFIAHGIPCWCAGEPYLYDNLYLGIVLAAVVVITGCFSYY 141

Query: 124 FRGFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS 181
               S+ +   F  L+   A ++      + P + L +G I+ +             K+ 
Sbjct: 142 QESKSSKIMESFAKLVPQYAVVIRGGQRIDAPAEALVVGDIIDV-------------KFG 188

Query: 182 PRTPWDL 188
            R P D+
Sbjct: 189 DRVPADI 195

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Taenia solium (taxid: 6204)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens GN=ATP1A1 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 32  MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIK 91

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 92  FCRQLFGGFSMLLWIGAILCFLAYSIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 151

Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 152 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 208

Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
             C V  S L+ + +   R+P
Sbjct: 209 NGCKVDNSSLTGESEPQTRSP 229

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P04074|AT1A1_SHEEP Sodium/potassium-transporting ATPase subunit alpha-1 OS=Ovis aries GN=ATP1A1 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 97/206 (47%), Gaps = 25/206 (12%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T  +RGL+       L +DGPN+L           
Sbjct: 30  MDELKKEVSMDDHKLSLDELHRKYGTDLNRGLTTARAAEILARDGPNALTPPPTTPEWVK 89

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 90  FCRQLFGGFSMLLWIGAVLCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 149

Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 150 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 206

Query: 165 LTCIVTGSLLSVQQKYSPRTPWDLLN 190
             C V  S L+ + +   R+P D  N
Sbjct: 207 NGCKVDNSSLTGESEPQTRSP-DFTN 231

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Ovis aries (taxid: 9940)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P50997|AT1A1_CANFA Sodium/potassium-transporting ATPase subunit alpha-1 OS=Canis familiaris GN=ATP1A1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 30  MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVK 89

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 90  FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 149

Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 150 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVIGDLVEVKGGDRIPAD---LRIISA 206

Query: 165 LTCIVTGSLLSVQQKYSPRTPWDLLN 190
             C V  S L+ + +   R+P D  N
Sbjct: 207 NGCKVDNSSLTGESEPQTRSP-DFTN 231

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Canis familiaris (taxid: 9615)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q5RDR3|AT1A1_PONAB Sodium/potassium-transporting ATPase subunit alpha-1 OS=Pongo abelii GN=ATP1A1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 32  MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIK 91

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 92  FCRQLFGGFSMLLWIGAILCFLAYSIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 151

Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 152 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 208

Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
             C V  S L+ + +   R+P
Sbjct: 209 NGCKVDNSSLTGESEPQTRSP 229

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q08DA1|AT1A1_BOVIN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bos taurus GN=ATP1A1 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 25/206 (12%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 30  MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTTARAAEILARDGPNALTPPPTTPEWVK 89

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 90  FCRQLFGGFSMLLWIGAVLCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 149

Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 150 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 206

Query: 165 LTCIVTGSLLSVQQKYSPRTPWDLLN 190
             C V  S L+ + +   R+P D  N
Sbjct: 207 NGCKVDNSSLTGESEPQTRSP-DFTN 231

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P05024|AT1A1_PIG Sodium/potassium-transporting ATPase subunit alpha-1 OS=Sus scrofa GN=ATP1A1 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 30  MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 89

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 90  FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 149

Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 150 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 206

Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
             C V  S L+ + +   R+P
Sbjct: 207 NGCKVDNSSLTGESEPQTRSP 227

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
407731560	1005	Na+,K+ ATPase alpha-subunit 2 [Aphis ner	0.579	0.119	0.491	5e-26
399920327	369	Na+/K+ ATPase alpha subunit, partial [Li	0.850	0.476	0.357	1e-23
365919327	1011	Na+/K+-ATPase alpha subunit [Litopenaeus	0.850	0.174	0.357	2e-23
307645734	1038	Na+/K+-ATPase alpha subunit [Fenneropena	0.850	0.169	0.357	2e-23
157690439	1011	sodium/potassium-transporting ATPase sub	0.850	0.174	0.352	2e-23
89032997	1038	Na+/K+-ATPase alpha subunit [Penaeus mon	0.850	0.169	0.357	2e-23
325302802	219	TPA_exp: Na+/K+ ATPase alpha subunit [Am	0.739	0.698	0.412	2e-23
392283969	1009	Na+/K+_ATPase [Exopalaemon carinicauda]	0.850	0.174	0.346	1e-22
256073306	1016	Na+/K+ transporting ATPase subunit alpha	0.821	0.167	0.362	1e-22
74274972	1037	sodium-potassium-activated adenosine tri	0.821	0.163	0.340	1e-22

>gi|407731560|gb|AFU25666.1| Na+,K+ ATPase alpha-subunit 2 [Aphis nerii]

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 81/120 (67%)

Query: 3   VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINN 62
            A++ DLK E+D+D+H IPL ELY+  +T P+RGL+  + KR L +DGPNSL    R   
Sbjct: 13  TAKMSDLKKEIDLDDHRIPLPELYTRYETDPERGLTTSQAKRLLLRDGPNSLTPPKRTPA 72

Query: 63  VYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
             IL+ ++F GFS LLW GA L FLAY ++  T+EE  +DNLWLG +L L C++T +  Y
Sbjct: 73  WIILLKHLFEGFSILLWAGAALCFLAYGIQYSTSEEPQEDNLWLGTVLVLVCVITGVFAY 132

Source: Aphis nerii

Species: Aphis nerii

Genus: Aphis

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399920327|gb|AFN40437.2| Na+/K+ ATPase alpha subunit, partial [Litopenaeus vannamei]

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+++DEH +P+EEL+  L  +PD GLS+ E KRR+E+DGPN+L    +      
Sbjct: 4   LNDLKQELELDEHKVPIEELFQRLTVNPDTGLSQSEAKRRIERDGPNALTPPKQTPEWVK 63

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +E    EE  +DNL+LGI+L    I+T +  Y   
Sbjct: 64  FCKNLFGGFSLLLWIGAILCFIAYSIETAAEEEPNKDNLYLGIVLTAVVIITGVFSYYQE 123

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  ++   A +L     +    + L +G I             V+ K+  R
Sbjct: 124 SKSSRIMESFKNMVPQYAIVLRDGEKQNVQAEELCIGDI-------------VEVKFGDR 170

Query: 184 TPWDLLNAGVRYIPSR 199
            P D     +R I SR
Sbjct: 171 IPAD-----IRVIESR 181

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365919327|gb|AEX07319.1| Na+/K+-ATPase alpha subunit [Litopenaeus stylirostris]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+++DEH +P+EEL+  L  +PD GLS+ E KRR+E+DGPN+L    +      
Sbjct: 20  LNDLKQELELDEHKVPIEELFQRLTVNPDTGLSQSEAKRRIERDGPNALTPPKQTPEWVK 79

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +E    EE  +DNL+LGI+L    I+T +  Y   
Sbjct: 80  FCKNLFGGFSLLLWIGAILCFIAYSIETAAEEEPNKDNLYLGIVLTAVVIITGVFSYYQE 139

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  ++   A +L     +    + L +G I             V+ K+  R
Sbjct: 140 SKSSRIMESFKNMVPQYAIVLRDGEKQNVQAEELCIGDI-------------VEVKFGDR 186

Query: 184 TPWDLLNAGVRYIPSR 199
            P D     +R I SR
Sbjct: 187 IPAD-----IRVIESR 197

Source: Litopenaeus stylirostris

Species: Litopenaeus stylirostris

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307645734|gb|ADN83843.1| Na+/K+-ATPase alpha subunit [Fenneropenaeus indicus] gi|309751850|gb|ADO84689.1| Na/K ATPase alpha subunit [Fenneropenaeus indicus] gi|326936820|gb|AEA11482.1| Na+/K+-ATPase alpha subunit [Fenneropenaeus indicus]

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+++DEH +P+EEL+  L  +PD GLS+ E KRR+E+DGPN+L    +      
Sbjct: 47  LNDLKQELELDEHKVPIEELFQRLTVNPDTGLSQSEAKRRIERDGPNALTPPKQTPEWVK 106

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +E    EE  +DNL+LGI+L    I+T +  Y   
Sbjct: 107 FCKNLFGGFSLLLWIGAILCFIAYSIETAAEEEPNKDNLYLGIVLTAVVIITGVFSYYQE 166

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  ++   A +L     +    + L +G I             V+ K+  R
Sbjct: 167 SKSSRIMESFKNMVPQYAIVLRDGEKQNVQAEELCIGDI-------------VEVKFGDR 213

Query: 184 TPWDLLNAGVRYIPSR 199
            P D     +R I SR
Sbjct: 214 IPAD-----IRVIESR 224

Source: Fenneropenaeus indicus

Species: Fenneropenaeus indicus

Genus: Fenneropenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157690439|gb|ABV65906.1| sodium/potassium-transporting ATPase subunit alpha [Penaeus monodon]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 20/196 (10%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+++DEH +P+EEL+  L  +PD GLS+ E KRR+E+DGPN+L    +      
Sbjct: 20  LNDLKQELELDEHKVPIEELFQRLTVNPDTGLSQSEAKRRIERDGPNALTPPKQTPEWVK 79

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +E    EE  +DNL+LGI+L    I+T +  Y   
Sbjct: 80  FCKNLFGGFSLLLWIGAILCFIAYSIETAAEEEPNKDNLYLGIVLTAVVIITGVFSYYQE 139

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  ++   A +L     ++   + L +G +             V+ K+  R
Sbjct: 140 SKSSRIMESFKNMVPQYAIVLRDGEKQKGQAEELCIGDM-------------VEVKFGDR 186

Query: 184 TPWDLLNAGVRYIPSR 199
            P D     +R I SR
Sbjct: 187 IPAD-----IRVIESR 197

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|89032997|gb|ABD59803.1| Na+/K+-ATPase alpha subunit [Penaeus monodon] gi|89032999|gb|ABD59804.1| Na+/K+-ATPase alpha subunit [Penaeus monodon] gi|237510760|gb|ACQ99366.1| Na+/K+-ATPase alpha subunit [Penaeus monodon]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/196 (35%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+++DEH +P+EEL+  L  +PD GLS+ E KRR+E+DGPN+L    +      
Sbjct: 47  LNDLKQELELDEHKVPIEELFQRLTVNPDTGLSQSEAKRRIERDGPNALTPPKQTPEWVK 106

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +E    EE  +DNL+LGI+L    I+T +  Y   
Sbjct: 107 FCQNLFGGFSLLLWIGAILCFIAYSIETAAEEEPNKDNLYLGIVLTAVVIITGVFSYYQE 166

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  ++   A +L     +    + L +G I             V+ K+  R
Sbjct: 167 SKSSRIMESFQNMVPQYAIVLRDGEKQNVQAEELCIGDI-------------VEVKFGDR 213

Query: 184 TPWDLLNAGVRYIPSR 199
            P D     +R I SR
Sbjct: 214 IPAD-----IRVIESR 224

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325302802|tpg|DAA34091.1| TPA_exp: Na+/K+ ATPase alpha subunit [Amblyomma variegatum]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK EV +DEH IP+EELY+ L T+P  GL+  + +  LE+DGPNSL    +      
Sbjct: 41  LDDLKQEVQMDEHKIPIEELYARLGTNPSTGLTSQQAREILERDGPNSLTPPKKTPEWVK 100

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA L F+AY ++A T EE P DNL+LG +LA+  IVT    Y   
Sbjct: 101 FCKNLFGGFSLLLWIGAALCFIAYSIQAGTFEEPPDDNLYLGAVLAIVVIVTGCFSYYQE 160

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLW 158
             S+ +   F  ++   A ++    N   P + LW
Sbjct: 161 ARSSKIMESFKNMVPQYAIVIRDGQNCTFPAEELW 195

Source: Amblyomma variegatum

Species: Amblyomma variegatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392283969|gb|AFM54541.1| Na+/K+_ATPase [Exopalaemon carinicauda]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 20/196 (10%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+++DEH +P+EEL+  L  +PD GLS+ E +RR+E+DGPN+L    +      
Sbjct: 18  LDDLKQELELDEHRVPIEELFQRLTVNPDTGLSQSEARRRIERDGPNALTPPKQTPEWIK 77

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +E    EE   DNL+LGI+L    I+T +  Y   
Sbjct: 78  FCKNLFGGFSLLLWIGAILCFIAYSIETAAEEEPNNDNLYLGIVLTAVVIITGVFSYYQE 137

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  ++   A +L     +    ++L +G I             V+ K+  R
Sbjct: 138 SKSSRIMESFKNMVPQYAIVLREGEKQNVHAEDLCIGDI-------------VEVKFGDR 184

Query: 184 TPWDLLNAGVRYIPSR 199
            P D     +R I +R
Sbjct: 185 IPAD-----IRVIEAR 195

Source: Exopalaemon carinicauda

Species: Exopalaemon carinicauda

Genus: Exopalaemon

Family: Palaemonidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|256073306|ref|XP_002572972.1| Na+/K+ transporting ATPase subunit alpha [Schistosoma mansoni] gi|360043551|emb|CCD78964.1| sodium potassium transporting ATPase alpha subunit [Schistosoma mansoni]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 15/185 (8%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           L DLK E+D+DEH IPLEELY+ L+T P+ GL   EV+ RLE+DGPN+L           
Sbjct: 26  LDDLKQELDMDEHKIPLEELYARLNTDPENGLKSEEVRIRLERDGPNALTPPKTTPEWVK 85

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY ++  + +E  +DNL+LGI+L    ++T    Y   
Sbjct: 86  FCKTLFGGFSMLLWIGAILCFIAYGIQRSSEDEDVKDNLYLGIVLLAVVVITGCFSYYQE 145

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  L+   A ++      E P +++ +G I             V+ K+  R
Sbjct: 146 SKSSRIMDSFKNLVPQTALVIRDGLKTEVPAESIVVGDI-------------VEVKFGDR 192

Query: 184 TPWDL 188
            P D+
Sbjct: 193 IPADI 197

Source: Schistosoma mansoni

Species: Schistosoma mansoni

Genus: Schistosoma

Family: Schistosomatidae

Order: Strigeidida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|74274972|gb|ABA02166.1| sodium-potassium-activated adenosine triphosphatase alpha subunit D isoform [Pachygrapsus marmoratus]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 15/185 (8%)

Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK E+++DEH +P+EEL+  L  +PD GL++ E +RRLE+DGPN+L    +      
Sbjct: 46  MDNLKQELELDEHKVPIEELFQRLSVNPDTGLTQAEARRRLERDGPNALTPPKQTQEWIK 105

Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR 125
               +F GFS LLW GA+L F+AY +EA + EE   DNL+LGI+L    I+T +  Y   
Sbjct: 106 FCKNLFGGFSLLLWIGAILCFIAYSIEAASEEEPNNDNLYLGIVLTAVVIITGIFSYYQE 165

Query: 126 GFSALLW--FGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR 183
             S+ +   F  L+   A ++     +    + L +G I+ +             K+  R
Sbjct: 166 SKSSRIMESFKNLVPQYAIVIREGEKQNVQAEELCIGDIIDV-------------KFGDR 212

Query: 184 TPWDL 188
            P D+
Sbjct: 213 IPADV 217

Source: Pachygrapsus marmoratus

Species: Pachygrapsus marmoratus

Genus: Pachygrapsus

Family: Grapsidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
FB|FBgn0002921	1041	Atpalpha "Na pump alpha subuni	0.560	0.111	0.491	2.9e-22
FB|FBgn0085503	1009	CG40625 [Drosophila melanogast	0.695	0.142	0.374	8.9e-20
FB|FBgn0040037	1009	JYalpha "JYalpha" [Drosophila	0.695	0.142	0.374	1.1e-19
UNIPROTKB|Q9YH26	1023	atp1a1 "Sodium/potassium-trans	0.555	0.112	0.426	3.2e-19
UNIPROTKB|Q56V60	1023	Q56V60 "Sodium potassium ATPas	0.555	0.112	0.408	4.1e-19
ZFIN|ZDB-GENE-001212-4	1024	atp1a1a.4 "ATPase, Na+/K+ tran	0.555	0.112	0.417	6.7e-19
UNIPROTKB|Q4H132	1028	atn1 "Na, K-ATPase alpha subun	0.565	0.113	0.418	8.5e-19
ZFIN|ZDB-GENE-001212-1	1028	atp1a1 "ATPase, Na+/K+ transpo	0.555	0.111	0.417	2.3e-18
UNIPROTKB|F5H3A1	1023	ATP1A1 "Sodium/potassium-trans	0.555	0.112	0.4	3.6e-18
UNIPROTKB|P05023	1023	ATP1A1 "Sodium/potassium-trans	0.555	0.112	0.4	3.6e-18

FB|FBgn0002921 Atpalpha "Na pump alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 271 (100.5 bits), Expect = 2.9e-22, P = 2.9e-22
 Identities = 58/118 (49%), Positives = 74/118 (62%)

Query:     6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSL-PQKYRINNVY 64
             L DLK E+DID H I  EELY    THP+ GLS  + K  LE+DGPN+L P K     V 
Sbjct:    50 LDDLKQELDIDFHKISPEELYQRFQTHPENGLSHAKAKENLERDGPNALTPPKQTPEWVK 109

Query:    65 ILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
                  +F GF+ LLW GA+L F+AY ++A T+EE   DNL+LGI+L+   IVT +  Y
Sbjct:   110 FCKN-LFGGFAMLLWIGAILCFVAYSIQASTSEEPADDNLYLGIVLSAVVIVTGIFSY 166

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS;IMP

GO:0009612 "response to mechanical stimulus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0006812 "cation transport" evidence=NAS;IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IC;ISS;NAS

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0050905 "neuromuscular process" evidence=IMP

GO:0001894 "tissue homeostasis" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005918 "septate junction" evidence=IDA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

FB|FBgn0085503 CG40625 [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 8.9e-20, Sum P(2) = 8.9e-20
 Identities = 55/147 (37%), Positives = 82/147 (55%)

Query:     6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
             ++  K +V+ D H IP++EL   L T P+ GLS +E K RLE +GPN L  +       +
Sbjct:    21 IQSFKKDVETDNHKIPVDELLERLKTDPNMGLSFVEAKLRLEINGPNILTPQPPTPKWIV 80

Query:    66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--I 123
              +  +F GF+ LLW G+ L F+ YL++ +T  E P DNL+LGI L +  IVT L  Y  +
Sbjct:    81 FLKTMFGGFAILLWAGSFLCFVGYLIQLQTQHEPPDDNLYLGIALTVLVIVTGLFTYFQV 140

Query:   124 FRGFSALLWFGALL-SFLAYLLEAETN 149
              +  S +  F  L+  +   + E E N
Sbjct:   141 HKSSSIMDSFKNLVPQYATVIREGEIN 167

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS

FB|FBgn0040037 JYalpha "JYalpha" [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 55/147 (37%), Positives = 82/147 (55%)

Query:     6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
             ++  K +V+ D H IP++EL   L T P+ GLS +E K RLE +GPN L  +       +
Sbjct:    21 IQSFKKDVETDNHKIPVDELLERLKTDPNMGLSFVEAKLRLEINGPNILTPQPPTPKWIV 80

Query:    66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--I 123
              +  +F GF+ LLW G+ L F+ YL++ +T  E P DNL+LGI L +  IVT L  Y  +
Sbjct:    81 FLKTMFGGFAILLWAGSFLCFVGYLIQLQTQHEPPDDNLYLGIALTVLVIVTGLFTYFQV 140

Query:   124 FRGFSALLWFGALL-SFLAYLLEAETN 149
              +  S +  F  L+  +   + E E N
Sbjct:   141 HKSSSIMDSFKNLVPQYATVVREGEIN 167

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=NAS

GO:0005886 "plasma membrane" evidence=ISS;NAS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030317 "sperm motility" evidence=IMP

GO:0006812 "cation transport" evidence=ISS

UNIPROTKB|Q9YH26 atp1a1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Oreochromis mossambicus (taxid:8127)]

 Score = 228 (85.3 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 49/115 (42%), Positives = 66/115 (57%)

Query:     8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
             DLK EVD+D+H + L+EL+    T   RGLS    K  L +DGPN+L             
Sbjct:    34 DLKKEVDLDDHKLTLDELHRKYGTDLTRGLSSSRAKEILARDGPNALTPPPTTPEWVKFC 93

Query:    68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GFS LLW GA+L FLAY ++A + +E   DNL+LGI+L+   I+T    Y
Sbjct:    94 KQLFGGFSMLLWIGAILCFLAYGIQAASEDEPANDNLYLGIVLSAVVIITGCFSY 148

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q56V60 Q56V60 "Sodium potassium ATPase alpha subunit" [Rhabdosargus sarba (taxid:182642)]

 Score = 224 (83.9 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
 Identities = 47/115 (40%), Positives = 66/115 (57%)

Query:     8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
             +LK EVD+D+H + L+EL+    T   RGLS    K  L +DGPN+L             
Sbjct:    34 ELKKEVDLDDHKLTLDELHRKYGTDLSRGLSNSRAKEILARDGPNALTPPPTTPEWVKFC 93

Query:    68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GFS LLW GA+L FLAY ++A + +E   DNL+LG++L+   I+T    Y
Sbjct:    94 RQLFGGFSMLLWIGAILCFLAYGIQAASEDEPANDNLYLGVVLSAVVIITGCFSY 148

GO:0016021 "integral to membrane" evidence=ISS

ZFIN|ZDB-GENE-001212-4 atp1a1a.4 "ATPase, Na+/K+ transporting, alpha 1a.4 polypeptide" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
 Identities = 48/115 (41%), Positives = 66/115 (57%)

Query:     8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
             +LK EVD+D+H + L+EL+    T   RGLS    K  L +DGPN+L             
Sbjct:    35 ELKKEVDLDDHKLTLDELHRKYGTDLTRGLSSSRAKEVLARDGPNALTPPPTTPEWVKFC 94

Query:    68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GFS LLW GA+L FLAY ++A + ++   DNL+LGI+LA   I+T    Y
Sbjct:    95 KQLFGGFSTLLWIGAILCFLAYGIQAASEDDPTNDNLYLGIVLAGVVIITGCFSY 149

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q4H132 atn1 "Na, K-ATPase alpha subunit" [Squalus acanthias (taxid:7797)]

 Score = 226 (84.6 bits), Expect = 8.5e-19, Sum P(2) = 8.5e-19
 Identities = 49/117 (41%), Positives = 67/117 (57%)

Query:     6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
             L +LK EV +D+H + L+EL++   T   RGL+    K  L +DGPNSL           
Sbjct:    37 LDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIK 96

Query:    66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
                 +F GFS LLW GA+L FLAY ++A T +E   DNL+LG++L+   IVT    Y
Sbjct:    97 FCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSY 153

GO:0016021 "integral to membrane" evidence=ISS

ZFIN|ZDB-GENE-001212-1 atp1a1 "ATPase, Na+/K+ transporting, alpha 1 polypeptide" [Danio rerio (taxid:7955)]

 Score = 217 (81.4 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
 Identities = 48/115 (41%), Positives = 65/115 (56%)

Query:     8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
             +LK EVD+D+H + L+EL    +T   RGLS    K  L +DGPN+L             
Sbjct:    37 ELKKEVDLDDHKLSLDELTRKYNTDLTRGLSGTRAKEILARDGPNALTPPPTTPEWVKFC 96

Query:    68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GFS LLW GA+L FLAY + A + EE   DNL+LGI+L+   ++T    Y
Sbjct:    97 KQLFGGFSTLLWIGAILCFLAYGILAASEEEPANDNLYLGIVLSAVVMITGCFSY 151

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0007420 "brain development" evidence=IMP

GO:0035051 "cardiocyte differentiation" evidence=IMP

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IMP

GO:0035050 "embryonic heart tube development" evidence=IMP

GO:0010172 "embryonic body morphogenesis" evidence=IMP

GO:0030916 "otic vesicle formation" evidence=IMP

GO:0048840 "otolith development" evidence=IGI;IMP

GO:0030917 "midbrain-hindbrain boundary development" evidence=IMP

GO:0071599 "otic vesicle development" evidence=IMP

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0003143 "embryonic heart tube morphogenesis" evidence=IMP

GO:0060974 "cell migration involved in heart formation" evidence=IMP

UNIPROTKB|F5H3A1 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 46/115 (40%), Positives = 64/115 (55%)

Query:     8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
             +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L             
Sbjct:    34 ELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFC 93

Query:    68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y
Sbjct:    94 RQLFGGFSMLLWIGAILCFLAYSIQAATEEEPQNDNLYLGVVLSAVVIITGCFSY 148

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0002026 "regulation of the force of heart contraction" evidence=IEA

GO:0002028 "regulation of sodium ion transport" evidence=IEA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0010107 "potassium ion import" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0030506 "ankyrin binding" evidence=IEA

GO:0030955 "potassium ion binding" evidence=IEA

GO:0031402 "sodium ion binding" evidence=IEA

GO:0031947 "negative regulation of glucocorticoid biosynthetic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IEA

GO:0045822 "negative regulation of heart contraction" evidence=IEA

GO:0045823 "positive regulation of heart contraction" evidence=IEA

GO:0045989 "positive regulation of striated muscle contraction" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0060081 "membrane hyperpolarization" evidence=IEA

GO:0071260 "cellular response to mechanical stimulus" evidence=IEA

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=IEA

UNIPROTKB|P05023 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Homo sapiens (taxid:9606)]

 Score = 218 (81.8 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 46/115 (40%), Positives = 64/115 (55%)

Query:     8 DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
             +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L             
Sbjct:    34 ELKKEVSMDDHKLSLDELHRKYGTDLSRGLTSARAAEILARDGPNALTPPPTTPEWIKFC 93

Query:    68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y
Sbjct:    94 RQLFGGFSMLLWIGAILCFLAYSIQAATEEEPQNDNLYLGVVLSAVVIITGCFSY 148

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS

GO:0002028 "regulation of sodium ion transport" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=TAS

GO:0034220 "ion transmembrane transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0051087 "chaperone binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	1e-25
smart00831	75	smart00831, Cation_ATPase_N, Cation transporter/AT	1e-14
pfam00690	69	pfam00690, Cation_ATPase_N, Cation transporter/ATP	9e-13
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	2e-11
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	2e-05
TIGR01524	867	TIGR01524, ATPase-IIIB_Mg, magnesium-translocating	0.002

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score =  103 bits (258), Expect = 1e-25
 Identities = 47/119 (39%), Positives = 65/119 (54%)

Query: 4   AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
             L +LK EV++D+H + L+EL     T   +GLS       L +DGPN+L         
Sbjct: 4   RDLDELKKEVEMDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEW 63

Query: 64  YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY 122
                 +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y
Sbjct: 64  VKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSY 122

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 65.7 bits (161), Expect = 1e-14
 Identities = 25/75 (33%), Positives = 38/75 (50%)

Query: 14 DIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRG 73
          ++D H + LEE+   L T  ++GLS  E  RRLE+ GPN LP   + + +   +      
Sbjct: 1  ELDWHALSLEEVLERLQTDLEKGLSSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNP 60

Query: 74 FSALLWFGALLSFLA 88
             +L   A+LS L 
Sbjct: 61 LIYILLAAAVLSALL 75

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases. Length = 75

>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus

 Score = 60.6 bits (148), Expect = 9e-13
 Identities = 23/69 (33%), Positives = 37/69 (53%)

Query: 17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSA 76
           H + +EE+ + L T  ++GL+E E + RLEK GPN LP+K   +   I +         
Sbjct: 1  WHTLSVEEVLARLGTDLEKGLTEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVI 60

Query: 77 LLWFGALLS 85
          +L   A++S
Sbjct: 61 ILLIAAIVS 69

Members of this families are involved in Na+/K+, H+/K+, Ca++ and Mg++ transport. Length = 69

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 123 IFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTG 171
           +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+TG
Sbjct: 70  LFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITG 118

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/68 (41%), Positives = 36/68 (52%)

Query: 20 IPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLW 79
          +   EL   L T P  GLSE EVKRRL+K GPN LP++ + + +   +      F  LL 
Sbjct: 28 VERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLL 87

Query: 80 FGALLSFL 87
            ALLS  
Sbjct: 88 VAALLSAF 95

Length = 917

>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 12 EVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIF 71
             + E  +  E L   L  H   GL+ +EV  RL + GPN   ++ ++ N+ +L+    
Sbjct: 10 NNLLKESQMGKETLLRKLGVHET-GLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFN 68

Query: 72 RGFSALLWFGALLSFLAYLLEA 93
            F  +L     +S+L   LEA
Sbjct: 69 NPFIYILAMLMGVSYLTDDLEA 90

This model describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms. These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis [Transport and binding proteins, Cations and iron carrying compounds]. Length = 867

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.97
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.97
KOG0202|consensus	972		99.96
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.96
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.96
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.96
PRK15122	903	magnesium-transporting ATPase; Provisional	99.96
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.95
KOG0203|consensus	1019		99.95
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.94
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.93
KOG0204|consensus	1034		99.93
KOG0205|consensus	942		99.92
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.9
KOG0208|consensus	1140		99.76
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.76
PF00690	69	Cation_ATPase_N: Cation transporter/ATPase, N-term	99.68
PRK01122	679	potassium-transporting ATPase subunit B; Provision	99.61
KOG0209|consensus	1160		99.6
PRK14010	673	potassium-transporting ATPase subunit B; Provision	99.6
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	99.55
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.51
smart00831	64	Cation_ATPase_N Cation transporter/ATPase, N-termi	99.48
PF00122	230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.44
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.43
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.39
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	99.36
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.28
PRK10671	834	copA copper exporting ATPase; Provisional	99.19
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	99.11
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.05
PLN03190	1178	aminophospholipid translocase; Provisional	98.99
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	98.59
KOG0207|consensus	951		98.2
KOG0206|consensus	1151		97.99
KOG0210|consensus	1051		97.92
KOG0203|consensus	1019		96.03
KOG4383|consensus	1354		86.36
PF12368	28	DUF3650: Protein of unknown function (DUF3650) ; I	80.29

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.97  E-value=6.2e-31  Score=260.68  Aligned_cols=164  Identities=19%  Similarity=0.213  Sum_probs=152.3

Q ss_pred             ccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q psy6873          15 IDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAE   94 (207)
Q Consensus        15 ~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~   94 (207)
                      .+||..+.+++.+.|+++..+|||++|+++|+++||+|+++.++++++|.+++++|++|+.++|++++++|++++     
T Consensus         5 ~~~~~~~~~~v~~~l~t~~~~GLs~~ea~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~-----   79 (1053)
T TIGR01523         5 NAYFSDIADEAAEFIGTSIPEGLTHDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMH-----   79 (1053)
T ss_pred             CchhhCCHHHHHHHhCcCcccCCCHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh-----
Confidence            468999999999999999778999999999999999999999988999999999999999999999999999874     


Q ss_pred             hcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeecc
Q psy6873          95 TNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGS  172 (207)
Q Consensus        95 ~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GD  172 (207)
                              +|.++++|+++++++++++++||++++++  +|+++.+.+++|+|||++++|+++||           ||||
T Consensus        80 --------~~~~~~iIl~vv~in~~i~~~QE~~aekal~aL~~l~~~~~~ViRdg~~~~I~a~eL-----------VpGD  140 (1053)
T TIGR01523        80 --------DWIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNLASPMAHVIRNGKSDAIDSHDL-----------VPGD  140 (1053)
T ss_pred             --------hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCeeeecCHhhC-----------CCCC
Confidence                    59999999999999999999999999999  89999999999999999999999999           9999


Q ss_pred             EEEEeccCCCCcccceeeeeeccc-CCCCCCCC
Q psy6873         173 LLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSG  204 (207)
Q Consensus       173 iv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~  204 (207)
                      +|.+  ++||+||||||++++.++ ..+..+.|
T Consensus       141 Iv~L--~~Gd~VPAD~rLi~~~~L~VDES~LTG  171 (1053)
T TIGR01523       141 ICLL--KTGDTIPADLRLIETKNFDTDEALLTG  171 (1053)
T ss_pred             EEEE--CCCCEeeccEEEEEeCceEEEchhhcC
Confidence            9999  999999999999998643 34444444

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.97  E-value=3.4e-30  Score=254.72  Aligned_cols=187  Identities=32%  Similarity=0.489  Sum_probs=163.9

Q ss_pred             HHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHH
Q psy6873           5 QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALL   84 (207)
Q Consensus         5 ~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~   84 (207)
                      +....++...++||..+.+++.+.|+++..+|||.+|+++|+++||+|+++.++++++|++|++++++|+.++|++++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l   84 (997)
T TIGR01106         5 DLDELKKEVEMDDHKLSLDELERKYGTDLSKGLSAARAAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAIL   84 (997)
T ss_pred             hhhhhhhhccCCchhCCHHHHHHHhCcCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHH
Confidence            34445566778999999999999999998789999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhh
Q psy6873          85 SFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGII  162 (207)
Q Consensus        85 s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~  162 (207)
                      +++++++....+......+|+++++++++++++++++++|++++++.  +++++.+.+++|+|||+++++++++|     
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~l-----  159 (997)
T TIGR01106        85 CFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQV-----  159 (997)
T ss_pred             HHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHC-----
Confidence            98877654322222233579999999999999999999999999998  88899999999999999999999999     


Q ss_pred             heeeeeeeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873         163 LALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG  204 (207)
Q Consensus       163 ~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~  204 (207)
                            ||||+|.+  ++||+|||||++++++. ...+..+.|
T Consensus       160 ------v~GDiv~l--~~Gd~IPaD~~il~~~~l~VdeS~LTG  194 (997)
T TIGR01106       160 ------VVGDLVEV--KGGDRIPADLRIISAQGCKVDNSSLTG  194 (997)
T ss_pred             ------CCCCEEEE--CCCCEEeeeEEEEEccCcEEEccccCC
Confidence                  99999999  99999999999999975 455555554

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>KOG0202|consensus

Probab=99.96  E-value=1.7e-30  Score=245.00  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=148.3

Q ss_pred             cccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6873          16 DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAET   95 (207)
Q Consensus        16 ~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~   95 (207)
                      +.|..+++|.+.+|.++.++|||.+|+.+|+++||.|+++.+..+++|+++++||.+++..+|+.+|++||.+.      
T Consensus         3 ~~~~~~v~e~~~~f~t~~~~GLt~~ev~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~------   76 (972)
T KOG0202|consen    3 EAHAKSVSEVLAEFGTDLEEGLTSDEVTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLA------   76 (972)
T ss_pred             chhcCcHHHHHHHhCcCcccCCCHHHHHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHH------
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999985      


Q ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccE
Q psy6873          96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSL  173 (207)
Q Consensus        96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDi  173 (207)
                             +|.++.+|.+++++++.+++|||++++++  +|+++.|+.++|+|+|+.+.+++++|           ||||+
T Consensus        77 -------~~~e~~vI~liiv~nvtVG~~QEy~aEkalEaLk~l~p~~~~V~R~gk~~~i~A~eL-----------VPGDi  138 (972)
T KOG0202|consen   77 -------DFDEPFVITLIIVINVTVGFVQEYNAEKALEALKELVPPMAHVLRSGKLQHILAREL-----------VPGDI  138 (972)
T ss_pred             -------hcccceeeeeeeeeeeeeeeeeehhhHHHHHHHHhcCCccceEEecCcccceehhcc-----------CCCCE
Confidence                   57789999999999999999999999999  99999999999999999999999999           99999


Q ss_pred             EEEeccCCCCcccceeeeeeccc
Q psy6873         174 LSVQQKYSPRTPWDLLNAGVRYI  196 (207)
Q Consensus       174 v~l~~~~Gd~iPaD~~l~~~~~~  196 (207)
                      |.+  +-||+||||.|+++..++
T Consensus       139 V~l--~vGDkVPADlRl~e~~sl  159 (972)
T KOG0202|consen  139 VEL--KVGDKIPADLRLIEAKSL  159 (972)
T ss_pred             EEE--ecCCccccceeEEeeeee
Confidence            999  999999999999998874

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.96  E-value=5.3e-29  Score=243.88  Aligned_cols=164  Identities=20%  Similarity=0.151  Sum_probs=150.8

Q ss_pred             ccccCCCHHHHHHHhCCCCCCCCC-HHHHHHHHHhcCCCCCCCcccCcHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhh
Q psy6873          15 IDEHLIPLEELYSILDTHPDRGLS-ELEVKRRLEKDGPNSLPQKYRINNVYILVGYI-FRGFSALLWFGALLSFLAYLLE   92 (207)
Q Consensus        15 ~~~~~~~~~~l~~~l~t~~~~GLs-~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~-~~p~~~~Ll~~a~~s~~~~~~~   92 (207)
                      .+||.++++++.+.|+++.++||| .+|+++|+++||+|+++.++++++|+.+++++ ++|+.++|++++++|++++   
T Consensus         2 ~~~~~~~~~~v~~~l~t~~~~GLs~~~ev~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g---   78 (884)
T TIGR01522         2 KQYCELSVEETCSKLQTDLQNGLNSSQEASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMG---   78 (884)
T ss_pred             cchhhCCHHHHHHHhCcCcccCCCcHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHc---
Confidence            468999999999999999888999 89999999999999999998899999999999 8999999999999998774   


Q ss_pred             hhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeee
Q psy6873          93 AETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVT  170 (207)
Q Consensus        93 ~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~  170 (207)
                                .|.+++++++++++++.++++||+++++.  +|+++.+.+++|+|||++++|++++|           ||
T Consensus        79 ----------~~~~~~~i~~~i~~~~~i~~~qe~~a~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eL-----------v~  137 (884)
T TIGR01522        79 ----------NIDDAVSITLAILIVVTVGFVQEYRSEKSLEALNKLVPPECHLIREGKLEHVLASTL-----------VP  137 (884)
T ss_pred             ----------chhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHC-----------cc
Confidence                      58899999999999999999999999998  88999999999999999999999999           99


Q ss_pred             ccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873         171 GSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG  204 (207)
Q Consensus       171 GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~  204 (207)
                      ||+|.+  ++||+|||||+++++++ ...+..+.|
T Consensus       138 GDiv~l--~~Gd~IPaDg~ii~g~~l~VDES~LTG  170 (884)
T TIGR01522       138 GDLVCL--SVGDRVPADLRIVEAVDLSIDESNLTG  170 (884)
T ss_pred             CCEEEe--cCCCEEeeeEEEEEcCceEEEcccccC
Confidence            999999  99999999999999963 455555444

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.96  E-value=2.1e-28  Score=239.16  Aligned_cols=171  Identities=25%  Similarity=0.301  Sum_probs=153.6

Q ss_pred             ChhHHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHH
Q psy6873           2 DVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFG   81 (207)
Q Consensus         2 ~~~~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~   81 (207)
                      ||.++.++.+.     |..+.+++.+.++++. +|||++|+.+|+++||+|+++.++++++|+.++++|++|+.++|+++
T Consensus         5 ~~~~~~~~~~~-----~~~~~~~~~~~l~~~~-~GLs~~ev~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~   78 (867)
T TIGR01524         5 VKKQGNNLLKE-----SQMGKETLLRKLGVHE-TGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAML   78 (867)
T ss_pred             CchHHHHHHHH-----HhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHH
Confidence            45555555544     5677999999999985 79999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEE------CCeEEEee
Q psy6873          82 ALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLE------AETNEEKP  153 (207)
Q Consensus        82 a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR------~g~~~~i~  153 (207)
                      ++++++.+             +|.++++++++++++++++++||++++++  +|+++.+..++|+|      ||++++++
T Consensus        79 a~ls~~~~-------------~~~~~~iI~~iv~~~~~i~~~~e~~a~ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~  145 (867)
T TIGR01524        79 MGVSYLTD-------------DLEATVIIALMVLASGLLGFIQESRAERAAYALKNMVKNTATVLRVINENGNGSMDEVP  145 (867)
T ss_pred             HHHHHHHh-------------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCeeEEEEecccCCCCeEEEEE
Confidence            99998763             68999999999999999999999999988  89999999999999      99999999


Q ss_pred             CcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873         154 QDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG  204 (207)
Q Consensus       154 ~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~  204 (207)
                      +++|           ||||+|.+  ++||+|||||+++++++ ...+-.+.|
T Consensus       146 ~~eL-----------v~GDiV~l--~~Gd~VPaDg~li~g~~l~VDES~LTG  184 (867)
T TIGR01524       146 IDAL-----------VPGDLIEL--AAGDIIPADARVISARDLFINQSALTG  184 (867)
T ss_pred             hhcC-----------CCCCEEEE--CCCCEEcccEEEEecCceEEEcccccC
Confidence            9999           99999999  99999999999999986 456666655

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.96  E-value=5.3e-28  Score=236.87  Aligned_cols=161  Identities=27%  Similarity=0.344  Sum_probs=149.0

Q ss_pred             ccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy6873          17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETN   96 (207)
Q Consensus        17 ~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~   96 (207)
                      .+..+.+++.+.++++. +|||++|+++|+++||+|+++.++++++|+.++++|++|+.++|+++++++++++       
T Consensus        49 ~~~~~~~~v~~~l~~~~-~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~-------  120 (902)
T PRK10517         49 AAVMPEEELWKTFDTHP-EGLNEAEVESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATE-------  120 (902)
T ss_pred             HHcCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc-------
Confidence            45677999999999996 7999999999999999999999998999999999999999999999999998763       


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEEC------CeEEEeeCcchhhhhhheeeee
Q psy6873          97 EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEA------ETNEEKPQDNLWLGIILALTCI  168 (207)
Q Consensus        97 ~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~------g~~~~i~~~~L~~~~~~~~~~~  168 (207)
                            +|.++++++++++++.+++++||+|+++.  +|+++.+.+++|+||      |++++|++++|           
T Consensus       121 ------~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eL-----------  183 (902)
T PRK10517        121 ------DLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVLRVINDKGENGWLEIPIDQL-----------  183 (902)
T ss_pred             ------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhC-----------
Confidence                  58899999999999999999999999998  899999999999999      67899999999           


Q ss_pred             eeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873         169 VTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG  204 (207)
Q Consensus       169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~  204 (207)
                      ||||+|.+  ++||+|||||+++++++ ...+..+.|
T Consensus       184 vpGDiV~l--~~Gd~IPaDg~li~g~~l~VDES~LTG  218 (902)
T PRK10517        184 VPGDIIKL--AAGDMIPADLRILQARDLFVAQASLTG  218 (902)
T ss_pred             CCCCEEEE--CCCCEEeeeEEEEEcCceEEEecCcCC
Confidence            99999999  99999999999999986 567777666

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.96  E-value=8.6e-28  Score=235.54  Aligned_cols=172  Identities=23%  Similarity=0.232  Sum_probs=153.9

Q ss_pred             ccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhc
Q psy6873          17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETN   96 (207)
Q Consensus        17 ~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~   96 (207)
                      .|..+.+++.+.|+++. +|||++|+++|+++||+|+++.++++++|..|+++|++|+.++|++++++|++++++.... 
T Consensus        27 ~~~~~~~~v~~~l~~~~-~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~-  104 (903)
T PRK15122         27 EAANSLEETLANLNTHR-QGLTEEDAAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLR-  104 (903)
T ss_pred             HHhCCHHHHHHHhCCCC-CCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcc-
Confidence            68899999999999994 8999999999999999999999998999999999999999999999999999886543211 


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECC------eEEEeeCcchhhhhhheeeee
Q psy6873          97 EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAE------TNEEKPQDNLWLGIILALTCI  168 (207)
Q Consensus        97 ~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g------~~~~i~~~~L~~~~~~~~~~~  168 (207)
                       ++...+|.++++++++++++++++++||++++++  +|+++.+.+++|+|||      ++++|++++|           
T Consensus       105 -~~~~~~~~~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eL-----------  172 (903)
T PRK15122        105 -RGEETDLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMREL-----------  172 (903)
T ss_pred             -CCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHC-----------
Confidence             1112468999999999999999999999999998  8999999999999994      7899999999           


Q ss_pred             eeccEEEEeccCCCCcccceeeeeeccc-CCCCCCCC
Q psy6873         169 VTGSLLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSG  204 (207)
Q Consensus       169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~  204 (207)
                      ||||+|.+  ++||+|||||++++++++ ..+-.+.|
T Consensus       173 v~GDiV~l--~~Gd~IPaDg~li~g~~l~VDES~LTG  207 (903)
T PRK15122        173 VPGDIVHL--SAGDMIPADVRLIESRDLFISQAVLTG  207 (903)
T ss_pred             CCCCEEEE--CCCCEEeeeEEEEEcCceEEEccccCC
Confidence            99999999  999999999999999874 66666666

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.95  E-value=1.7e-27  Score=234.50  Aligned_cols=171  Identities=18%  Similarity=0.166  Sum_probs=148.9

Q ss_pred             CHHHHHHHhCCCCCCCCC--HHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCC
Q psy6873          21 PLEELYSILDTHPDRGLS--ELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEE   98 (207)
Q Consensus        21 ~~~~l~~~l~t~~~~GLs--~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~   98 (207)
                      +.+++.+.|+++.++|||  .+|+++|+++||+|+++.++++++|++++++|++|+.++|++++++|++++.........
T Consensus        43 ~~~~~~~~l~t~~~~GLs~~~~ev~~r~~~yG~N~l~~~~~~s~~~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~  122 (941)
T TIGR01517        43 GAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKA  122 (941)
T ss_pred             CHHHHHHHhCcCcccCCCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccC
Confidence            689999999999888999  999999999999999999998999999999999999999999999999876432111112


Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhc-CCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEE
Q psy6873          99 KPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGAL-LSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLS  175 (207)
Q Consensus        99 ~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~-~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~  175 (207)
                      .+..+|+++++++++++++.++++++++++++.  ++++. .+..++|+|||+++++++++|           ||||+|.
T Consensus       123 ~~~~~~~~~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~L-----------v~GDiV~  191 (941)
T TIGR01517       123 DTETGWIEGVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDI-----------VVGDIVS  191 (941)
T ss_pred             ccccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHC-----------CCCCEEE
Confidence            233579999999999999999999999999998  77654 477899999999999999999           9999999


Q ss_pred             EeccCCCCcccceeeeee-cccCCCCCCCC
Q psy6873         176 VQQKYSPRTPWDLLNAGV-RYIPSRYPKSG  204 (207)
Q Consensus       176 l~~~~Gd~iPaD~~l~~~-~~~~~~~~~~~  204 (207)
                      +  ++||+|||||+++++ +....+..+.|
T Consensus       192 l--~~Gd~IPaD~~li~g~~l~VdES~LTG  219 (941)
T TIGR01517       192 L--STGDVVPADGVFISGLSLEIDESSITG  219 (941)
T ss_pred             E--CCCCEecccEEEEEcCcEEEEecccCC
Confidence            9  999999999999999 55666665555

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>KOG0203|consensus

Probab=99.95  E-value=7.5e-29  Score=233.81  Aligned_cols=181  Identities=34%  Similarity=0.526  Sum_probs=173.8

Q ss_pred             hhHHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHH
Q psy6873           3 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGA   82 (207)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a   82 (207)
                      ++++++++||.+++.|+++.+|++++|.++..+|||.+++.+++++.|+|.+++|+..+-|.+|.+++++.+.+++|+++
T Consensus        25 ~~~l~~~k~e~~~~~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a  104 (1019)
T KOG0203|consen   25 KKELDDLKKEVSMDDHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGA  104 (1019)
T ss_pred             hhhHHHHhhheeeccccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhh
Q psy6873          83 LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLG  160 (207)
Q Consensus        83 ~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~  160 (207)
                      ++||+.|++++.+.++++.++++.|+++..+++++.+++|+|+.++.+.  ++++++|..+.|+|||+...+.+++|   
T Consensus       105 ~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eel---  181 (1019)
T KOG0203|consen  105 ILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSYYQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEEL---  181 (1019)
T ss_pred             HHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCCccchhhHHHHHHHhccchhhheeeecceeEEechhhc---
Confidence            9999999998877777888999999999999999999999999999998  89999999999999999999999999   


Q ss_pred             hhheeeeeeeccEEEEeccCCCCcccceeeeeeccc
Q psy6873         161 IILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYI  196 (207)
Q Consensus       161 ~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~  196 (207)
                              |+||++.+  +.||+||||.|++++...
T Consensus       182 --------VvGD~v~v--k~GdrVPADiRiis~~g~  207 (1019)
T KOG0203|consen  182 --------VVGDLVEV--KGGDRVPADIRIISATGC  207 (1019)
T ss_pred             --------ccccceee--ccCCcccceeEEEEecce
Confidence                    99999999  999999999999998754

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=99.94  E-value=5.3e-26  Score=219.55  Aligned_cols=142  Identities=23%  Similarity=0.282  Sum_probs=131.4

Q ss_pred             CCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHH
Q psy6873          36 GLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCI  115 (207)
Q Consensus        36 GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~  115 (207)
                      |||.+|+++|+++||+|+++.++ ++.|..|+++|++|+.++|+++++++++++             +|.++++++++++
T Consensus         1 GLs~~ea~~r~~~~G~N~~~~~~-~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~-------------~~~~~~~i~~~~~   66 (755)
T TIGR01647         1 GLTSAEAKKRLAKYGPNELPEKK-VSPLLKFLGFFWNPLSWVMEAAAIIAIALE-------------NWVDFVIILGLLL   66 (755)
T ss_pred             CcCHHHHHHHHHhcCCCCCCCCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhhc-------------chhhhhhhhhhhH
Confidence            89999999999999999999855 778999999999999999999999998874             5899999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeee
Q psy6873         116 VTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGV  193 (207)
Q Consensus       116 ~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~  193 (207)
                      +++.++++||+++++.  +|+++.+.+++|+|||+++++++++|           ||||+|.+  ++||+|||||+++++
T Consensus        67 i~~~i~~~qe~~a~~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~L-----------v~GDiV~l--~~Gd~IPaDg~vi~g  133 (755)
T TIGR01647        67 LNATIGFIEENKAGNAVEALKQSLAPKARVLRDGKWQEIPASEL-----------VPGDVVRL--KIGDIVPADCRLFEG  133 (755)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCEEEEEEhhhC-----------cCCCEEEE--CCCCEEeceEEEEec
Confidence            9999999999999998  88899999999999999999999999           99999999  999999999999999


Q ss_pred             c-ccCCCCCCCC
Q psy6873         194 R-YIPSRYPKSG  204 (207)
Q Consensus       194 ~-~~~~~~~~~~  204 (207)
                      + ....+-.+.|
T Consensus       134 ~~~~VDeS~LTG  145 (755)
T TIGR01647       134 DYIQVDQAALTG  145 (755)
T ss_pred             CceEEEcccccC
Confidence            8 5666666665

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.93  E-value=2e-25  Score=219.25  Aligned_cols=168  Identities=27%  Similarity=0.279  Sum_probs=151.3

Q ss_pred             CccccCCCHH--HHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q psy6873          14 DIDEHLIPLE--ELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLL   91 (207)
Q Consensus        14 ~~~~~~~~~~--~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~   91 (207)
                      .+.+|..+.+  ++...+.++..+||+.+|+.+|++.||.|+++..+.+++|..|+.+|++|+..+|+++++++++++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~GLs~~e~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~   99 (917)
T COG0474          20 SETWHPLSVERNELLLELFTSPTTGLSEEEVKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDW   99 (917)
T ss_pred             cccccccccchhhHHHhhcCCcccCCCHHHHHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4567888888  99999999888999999999999999999999999899999999999999999999999999988632


Q ss_pred             hhhhcCCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeee
Q psy6873          92 EAETNEEKPQDNL-WLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCI  168 (207)
Q Consensus        92 ~~~~~~~~~~~~~-~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~  168 (207)
                      .          .. .++.+++++++++++++++||+++++.  +++++.+.+++|+|||+++++++++|           
T Consensus       100 ~----------~~~~~~~~I~~~i~~n~~~g~~qe~~a~~~l~~lk~~~~~~~~V~R~g~~~~i~a~eL-----------  158 (917)
T COG0474         100 V----------DAGVDAIVILLVVVINALLGFVQEYRAEKALEALKKMSSPKAKVLRDGKFVEIPASEL-----------  158 (917)
T ss_pred             c----------ccCcceeeehHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEeCCcEEEecHHHC-----------
Confidence            1          01 566788899999999999999999999  89999999999999999999999999           


Q ss_pred             eeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873         169 VTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG  204 (207)
Q Consensus       169 V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~  204 (207)
                      ||||+|.+  ++||+||||+|++++++ ...+-.+.|
T Consensus       159 VpGDiV~l--~~gd~vPAD~rLl~~~~l~VdEs~LTG  193 (917)
T COG0474         159 VPGDIVLL--EAGDVVPADLRLLESSDLEVDESALTG  193 (917)
T ss_pred             CCCcEEEE--CCCCccccceEEEEecCceEEcccccC
Confidence            99999999  99999999999999998 555555555

>KOG0204|consensus

Probab=99.93  E-value=3.1e-26  Score=216.45  Aligned_cols=178  Identities=19%  Similarity=0.194  Sum_probs=154.4

Q ss_pred             ChhHHhhhccccCcc-ccCCC-HHHHHHHhCCCCCCCCCH--HHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHH
Q psy6873           2 DVAQLRDLKNEVDID-EHLIP-LEELYSILDTHPDRGLSE--LEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSAL   77 (207)
Q Consensus         2 ~~~~l~~~~~~~~~~-~~~~~-~~~l~~~l~t~~~~GLs~--~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~   77 (207)
                      +.++|.++.++++.. .+.++ ++++++.|+||+..||+.  +|+.+|++.||.|.+|++++++||++.|+++++...++
T Consensus        81 ~~e~l~~i~~~~~~~~L~~~gGv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD~TLiI  160 (1034)
T KOG0204|consen   81 GAEELVKIVKEHDLKALNAYGGVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQDVTLII  160 (1034)
T ss_pred             CHHHHHHHhhccchhhhhhccCHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhccchHHH
Confidence            567888888888766 45544 999999999999999986  78999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhh-cCCCeEEEEECCeEEEeeC
Q psy6873          78 LWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGA-LLSFLAYLLEAETNEEKPQ  154 (207)
Q Consensus        78 Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~-~~~~~~~ViR~g~~~~i~~  154 (207)
                      |.++|++|+.++++.+     +.+..|++|+.|++.+++.++++...+++.+++  .|.+ .......|+|+|+.++++.
T Consensus       161 L~vaAvvSl~lgi~~~-----g~~~GW~eG~aI~~sV~~VV~VtA~nDy~qe~QF~~L~~~k~~~k~~ViR~G~r~~isI  235 (1034)
T KOG0204|consen  161 LMVAAVVSLGLGIYTP-----GIEDGWIEGVAILLSVILVVLVTAVNDYRQELQFRKLQKEKRNIKFQVIRGGRRQQISI  235 (1034)
T ss_pred             HHHHHHHHHhhhhccC-----CCCcccccchhheeeEEEEEEEeecchhHHhhhhhhhhhhhhceEEEEEECCEEEEEEE
Confidence            9999999998876642     223579999999998877777788888887777  5543 3346789999999999999


Q ss_pred             cchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccC
Q psy6873         155 DNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP  197 (207)
Q Consensus       155 ~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~  197 (207)
                      .||           |+|||+.+  +.||.+||||+++++.++.
T Consensus       236 ~di-----------VVGDIv~l--k~GDqvPADGvli~gn~L~  265 (1034)
T KOG0204|consen  236 YDL-----------VVGDIVQL--KIGDQVPADGVLIQGNSLK  265 (1034)
T ss_pred             eee-----------eeccEEEe--ecCCccccceEEEecccee
Confidence            999           99999999  9999999999999997663

>KOG0205|consensus

Probab=99.92  E-value=2.6e-25  Score=205.62  Aligned_cols=167  Identities=23%  Similarity=0.254  Sum_probs=147.8

Q ss_pred             HhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6873           6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLS   85 (207)
Q Consensus         6 l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s   85 (207)
                      +++.++| ..+..+.+.+++.++|.++. .|||++|+++|++.||+|++..++ .+.+.+|+.-+.+|+.+++-.+|+..
T Consensus         8 ~~di~~E-~vdl~~~p~eeVfeeL~~t~-~GLt~~E~~eRlk~fG~NkleEkk-en~~lKFl~Fm~~PlswVMEaAAimA   84 (942)
T KOG0205|consen    8 LEDIKKE-QVDLEAIPIEEVFEELLCTR-EGLTSDEVEERLKIFGPNKLEEKK-ESKFLKFLGFMWNPLSWVMEAAAIMA   84 (942)
T ss_pred             hhhhhhh-ccccccCchhhhHHHHhcCC-CCCchHHHHHHHHhhCchhhhhhh-hhHHHHHHHHHhchHHHHHHHHHHHH
Confidence            4555555 45577889999999999884 699999999999999999999766 88899999999999999888888776


Q ss_pred             HHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhh
Q psy6873          86 FLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIIL  163 (207)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~  163 (207)
                      ..+.      |++....+|.+...||+.+++|+.++|++|+++.+.  +|++-+..+++|+|||+|.++++++|      
T Consensus        85 ~~La------ng~~~~~DW~DF~gI~~LLliNsti~FveE~nAGn~aa~L~a~LA~KakVlRDGkw~E~eAs~l------  152 (942)
T KOG0205|consen   85 IGLA------NGGGRPPDWQDFVGICCLLLINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGKWSEQEASIL------  152 (942)
T ss_pred             HHHh------cCCCCCcchhhhhhhheeeeecceeeeeeccccchHHHHHHhccCcccEEeecCeeeeeecccc------
Confidence            5542      333333579999999999999999999999999998  89999999999999999999999999      


Q ss_pred             eeeeeeeccEEEEeccCCCCcccceeeeeec
Q psy6873         164 ALTCIVTGSLLSVQQKYSPRTPWDLLNAGVR  194 (207)
Q Consensus       164 ~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~  194 (207)
                           |||||+.+  +.||+||||+|+++++
T Consensus       153 -----VPGDIlsi--k~GdIiPaDaRLl~gD  176 (942)
T KOG0205|consen  153 -----VPGDILSI--KLGDIIPADARLLEGD  176 (942)
T ss_pred             -----ccCceeee--ccCCEecCccceecCC
Confidence                 99999999  9999999999999998

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.90  E-value=2.7e-23  Score=206.86  Aligned_cols=144  Identities=14%  Similarity=0.172  Sum_probs=127.5

Q ss_pred             CCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHH
Q psy6873          34 DRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALT  113 (207)
Q Consensus        34 ~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v  113 (207)
                      .+|||.+|+.+|+++||+|+++.+. +++|+++++++++||+++++++++++++.             ++|+++++++++
T Consensus       137 ~~GLs~~e~~~r~~~yG~N~i~~~~-~s~~~ll~~~~~~p~~i~~i~~~~l~~~~-------------~~~~~~~~i~~i  202 (1054)
T TIGR01657       137 SNGLTTGDIAQRKAKYGKNEIEIPV-PSFLELLKEEVLHPFYVFQVFSVILWLLD-------------EYYYYSLCIVFM  202 (1054)
T ss_pred             ccCCCHHHHHHHHHhcCCCeeecCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhh-------------hhHHHHHHHHHH
Confidence            4799999999999999999999876 89999999999999998888776555432             368999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEecc--CCCCccccee
Q psy6873         114 CIVTVLVGYIFRGFSALLWFGAL--LSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK--YSPRTPWDLL  189 (207)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~--~Gd~iPaD~~  189 (207)
                      ++++..+++++++++.+. ++++  .+..++|+|||++++++++||           ||||+|.+  +  +|++|||||+
T Consensus       203 ~~~~~~~~~~~~~k~~~~-L~~~~~~~~~v~V~Rdg~~~~I~s~eL-----------vpGDiv~l--~~~~g~~iPaD~~  268 (1054)
T TIGR01657       203 SSTSISLSVYQIRKQMQR-LRDMVHKPQSVIVIRNGKWVTIASDEL-----------VPGDIVSI--PRPEEKTMPCDSV  268 (1054)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHhhcCCeeEEEEECCEEEEEEcccC-----------CCCCEEEE--ecCCCCEecceEE
Confidence            999999999999998776 3333  467899999999999999999           99999999  8  9999999999


Q ss_pred             eeeecccCCCCCCCCC
Q psy6873         190 NAGVRYIPSRYPKSGA  205 (207)
Q Consensus       190 l~~~~~~~~~~~~~~~  205 (207)
                      +++|+....+.++.|-
T Consensus       269 ll~g~~~VdES~LTGE  284 (1054)
T TIGR01657       269 LLSGSCIVNESMLTGE  284 (1054)
T ss_pred             EEeCcEEEecccccCC
Confidence            9999998888888774

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>KOG0208|consensus

Probab=99.76  E-value=7.2e-18  Score=161.91  Aligned_cols=144  Identities=16%  Similarity=0.192  Sum_probs=122.8

Q ss_pred             CCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHH
Q psy6873          34 DRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALT  113 (207)
Q Consensus        34 ~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v  113 (207)
                      .+||+..++..|+..||+|.+..+. ++.+++++++..+||+....+    |.++|+..         +++++|..|.++
T Consensus       158 ~~gL~~~~~~~r~~iyG~N~i~l~i-k~i~~iLv~EvL~PfYlFQ~f----Sv~lW~~d---------~Y~~YA~cI~ii  223 (1140)
T KOG0208|consen  158 SNGLERQEIIDRRIIYGRNVISLPI-KSISQILVKEVLNPFYLFQAF----SVALWLAD---------SYYYYAFCIVII  223 (1140)
T ss_pred             cCCccHHHHHhHHhhcCCceeeeec-ccHHHHHHHhccchHHHHHhH----Hhhhhhcc---------cchhhhhHHHHH
Confidence            5899999999999999999999988 999999999999999877764    44555433         467888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCC--CeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccC-CCCcccceee
Q psy6873         114 CIVTVLVGYIFRGFSALLWFGALLS--FLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKY-SPRTPWDLLN  190 (207)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~-Gd~iPaD~~l  190 (207)
                      .+.+.+.+.++.++.+. .+++|..  ..++|+|+|.+++|+++||           ||||++++  .+ |-..|||+++
T Consensus       224 sv~Si~~sv~e~r~qs~-rlr~mv~~~~~V~V~R~g~~~ti~S~eL-----------VPGDil~i--~~~~~~~PcDa~L  289 (1140)
T KOG0208|consen  224 SVYSIVLSVYETRKQSI-RLRSMVKFTCPVTVIRDGFWETVDSSEL-----------VPGDILYI--PPPGKIMPCDALL  289 (1140)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHhcCCceEEEEECCEEEEEecccc-----------ccccEEEE--CCCCeEeecceEE
Confidence            88888888887665555 4666554  4689999999999999999           99999999  44 8999999999


Q ss_pred             eeecccCCCCCCCCC
Q psy6873         191 AGVRYIPSRYPKSGA  205 (207)
Q Consensus       191 ~~~~~~~~~~~~~~~  205 (207)
                      ++|+.+.++-|+.|.
T Consensus       290 i~g~civNEsmLTGE  304 (1140)
T KOG0208|consen  290 ISGDCIVNESMLTGE  304 (1140)
T ss_pred             EeCcEEeecccccCC
Confidence            999999999999884

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.76  E-value=3.5e-18  Score=168.38  Aligned_cols=123  Identities=15%  Similarity=0.134  Sum_probs=107.2

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEE
Q psy6873          66 LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYL  143 (207)
Q Consensus        66 ~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~V  143 (207)
                      ++++|++|+.++|++++++|+++++...   +.....+|.++++|++++++++.++++||+++++.  +|+++.+.+++|
T Consensus         1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~---~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~V   77 (917)
T TIGR01116         1 VLEQFEDLLVRILLLAACVSFVLAWFEE---GEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKV   77 (917)
T ss_pred             ChHHHhCHHHHHHHHHHHHHHHHhcccc---cccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE
Confidence            4689999999999999999998864421   12223579999999999999999999999999998  888999999999


Q ss_pred             EECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc-cCCCCCCCC
Q psy6873         144 LEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY-IPSRYPKSG  204 (207)
Q Consensus       144 iR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~-~~~~~~~~~  204 (207)
                      +|||+++++++++|           ||||+|.+  ++||+|||||+++++++ ...+..+.|
T Consensus        78 iRdg~~~~I~~~~L-----------v~GDiv~l--~~Gd~IPaD~~ll~~~~l~VdeS~LTG  126 (917)
T TIGR01116        78 LRDGRWSVIKAKDL-----------VPGDIVEL--AVGDKVPADIRVLSLKTLRVDQSILTG  126 (917)
T ss_pred             EECCEEEEEEHHHC-----------CCCCEEEE--CCCCEeeccEEEEEecceEEEcccccC
Confidence            99999999999999           99999999  99999999999999963 455665555

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.68  E-value=1.6e-16  Score=109.79  Aligned_cols=69  Identities=35%  Similarity=0.458  Sum_probs=65.7

Q ss_pred             ccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6873          17 EHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLS   85 (207)
Q Consensus        17 ~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s   85 (207)
                      ||..+++++++.|+++..+|||.+|+.+|+++||+|.++.++++++|+.++++|.+||.++|++++++|
T Consensus         1 w~~~~~~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS   69 (69)
T PF00690_consen    1 WHQLSVEEVLKRLNTSSSQGLSSEEVEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS   69 (69)
T ss_dssp             -TTSSHHHHHHHHTTBTSSBBTHHHHHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHCcCCCCCCCHHHHHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence            799999999999999989999999999999999999999999999999999999999999999999886

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=99.61  E-value=4.4e-15  Score=141.86  Aligned_cols=124  Identities=15%  Similarity=0.046  Sum_probs=102.0

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHhhhhh-cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCC-eEEE
Q psy6873          68 GYIFRGFSALLWFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSF-LAYL  143 (207)
Q Consensus        68 ~~~~~p~~~~Ll~~a~~s~~~~~~~~~~-~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~-~~~V  143 (207)
                      .+++||+++++++++++|++++.+.... ++.+....|..++++++.++++.+++.++++|++++  +|+++.+. .++|
T Consensus        29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v  108 (679)
T PRK01122         29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK  108 (679)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            5778999999999999999887543211 111223567778888888888888889999999988  88998885 7999


Q ss_pred             EECCe-EEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873         144 LEAET-NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       144 iR~g~-~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      +|+|+ ++++++++|           ++||+|.+  ++||+|||||+++++.....+-.+.|
T Consensus       109 ir~g~~~~~V~~~eL-----------~~GDiV~v--~~Gd~IPaDG~vieG~a~VDESaLTG  157 (679)
T PRK01122        109 LREPGAAEEVPATEL-----------RKGDIVLV--EAGEIIPADGEVIEGVASVDESAITG  157 (679)
T ss_pred             EECCCEEEEEEHHHc-----------CCCCEEEE--cCCCEEEEEEEEEEccEEEEcccccC
Confidence            99987 899999999           99999999  99999999999999987666666655

>KOG0209|consensus

Probab=99.60  E-value=8.1e-15  Score=139.24  Aligned_cols=158  Identities=15%  Similarity=0.107  Sum_probs=124.9

Q ss_pred             CHHHHHHHhCCCCCCCCCH-HHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCC
Q psy6873          21 PLEELYSILDTHPDRGLSE-LEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEK   99 (207)
Q Consensus        21 ~~~~l~~~l~t~~~~GLs~-~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~   99 (207)
                      +.++..-.+..+  +|+.. +++..-.++||.|....+. ++|.++|.++...||..++.+    |..+|.++       
T Consensus       149 p~~~~~g~~~k~--~G~~~~~~i~~a~~~~G~N~fdi~v-PtF~eLFkE~A~aPfFVFQVF----cvgLWCLD-------  214 (1160)
T KOG0209|consen  149 PTDEPFGYFQKS--TGHEEESEIKLAKHKYGKNKFDIVV-PTFSELFKEHAVAPFFVFQVF----CVGLWCLD-------  214 (1160)
T ss_pred             CcCCcchhhhhc--cCcchHHHHHHHHHHhcCCccccCC-ccHHHHHHHhccCceeeHhHH----hHHHHHhH-------
Confidence            355666666655  57763 4555556679999999988 899999999999998766654    44444443       


Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEec
Q psy6873         100 PQDNLWLGIILALTCIVTVLVGYIFRGFSALL-WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQ  178 (207)
Q Consensus       100 ~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~  178 (207)
                        ++||++++-++|++.-..--.+|+.++... +-....+..+.|+|+++|+.+.++||           +|||+|.+..
T Consensus       215 --eyWYySlFtLfMli~fE~tlV~Qrm~~lse~R~Mg~kpy~I~v~R~kKW~~l~seeL-----------lPgDvVSI~r  281 (1160)
T KOG0209|consen  215 --EYWYYSLFTLFMLIAFEATLVKQRMRTLSEFRTMGNKPYTINVYRNKKWVKLMSEEL-----------LPGDVVSIGR  281 (1160)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCcceecccccc-----------CCCceEEecc
Confidence              579999999999887777677777776665 55555678899999999999999999           9999999943


Q ss_pred             cC-CCCcccceeeeeecccCCCCCCCCC
Q psy6873         179 KY-SPRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       179 ~~-Gd~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      .+ ...||||.+++.|+.+.++.|++|.
T Consensus       282 ~~ed~~vPCDllLL~GsciVnEaMLtGE  309 (1160)
T KOG0209|consen  282 GAEDSHVPCDLLLLRGSCIVNEAMLTGE  309 (1160)
T ss_pred             CcccCcCCceEEEEecceeechhhhcCC
Confidence            22 3579999999999999999999995

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=99.60  E-value=9.8e-15  Score=139.39  Aligned_cols=122  Identities=11%  Similarity=0.018  Sum_probs=95.9

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHhhcCCC-e
Q psy6873          68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIF----RGFSALL--WFGALLSF-L  140 (207)
Q Consensus        68 ~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~----~~~~~~~--~l~~~~~~-~  140 (207)
                      ..+++|++++++++++++++++.+....++ . ....+++++++++++++.+++.++    |+|++++  +|+++.+. +
T Consensus        28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~-~-~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~  105 (673)
T PRK14010         28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQ-E-SVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMK  105 (673)
T ss_pred             HHHHChHHHHHHHHHHHHHHHHHHhhhccc-c-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence            456789999999999999988654211111 1 113467888888888888888888    5777776  88888876 7


Q ss_pred             EE-EEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873         141 AY-LLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       141 ~~-ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      ++ |.|||+++++++++|           +|||+|.+  ++||+|||||++++++....+-.+.|
T Consensus       106 a~~v~rdg~~~~I~a~eL-----------v~GDiV~v--~~Gd~IPaDG~vieG~~~VDESaLTG  157 (673)
T PRK14010        106 ARRIKQDGSYEMIDASDL-----------KKGHIVRV--ATGEQIPNDGKVIKGLATVDESAITG  157 (673)
T ss_pred             EEEEEeCCEEEEEEHHHc-----------CCCCEEEE--CCCCcccCCeEEEEcceEEecchhcC
Confidence            76 789999999999999           99999999  99999999999999987666555554

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=99.55  E-value=3.5e-14  Score=135.55  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=95.5

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHH---HHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCC-eE
Q psy6873          68 GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWL---GIILALTCIVTVLVGYIFRGFSALL--WFGALLSF-LA  141 (207)
Q Consensus        68 ~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~---~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~-~~  141 (207)
                      .+|+||+++++++++++|++++......+.+.....|++   ++++++.++++.+++.++++|++++  +|+++.+. .+
T Consensus        28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a  107 (675)
T TIGR01497        28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFA  107 (675)
T ss_pred             HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence            467899999999999999988753211111001112444   4556666777888888999999988  88888876 48


Q ss_pred             EEEE-CCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873         142 YLLE-AETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       142 ~ViR-~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      +|+| ||+++++++++|           ++||+|.+  ++||+|||||++++++....+-.+.|
T Consensus       108 ~vlr~dg~~~~V~~~~L-----------~~GDiV~V--~~Gd~IPaDG~vieG~~~VDESaLTG  158 (675)
T TIGR01497       108 KLLRDDGAIDKVPADQL-----------KKGDIVLV--EAGDVIPCDGEVIEGVASVDESAITG  158 (675)
T ss_pred             EEEeeCCEEEEEEHHHC-----------CCCCEEEE--CCCCEEeeeEEEEEccEEEEcccccC
Confidence            8886 899999999999           99999999  99999999999999976666655555

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.51  E-value=1.1e-13  Score=129.67  Aligned_cols=90  Identities=19%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccC
Q psy6873         103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKY  180 (207)
Q Consensus       103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~  180 (207)
                      +|+++++++++++++..++.++++|+++.  .+.++.+.+++|+|+|+++++++++|           +|||++.+  ++
T Consensus        17 ~~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~   83 (536)
T TIGR01512        17 EYLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEEL-----------KVGDVVVV--KP   83 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--cC
Confidence            58899999999999999999999999998  88899999999999999999999999           99999999  99


Q ss_pred             CCCcccceeeeeecccCCCCCCCCC
Q psy6873         181 SPRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       181 Gd~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      ||+|||||++++++....+-++.|.
T Consensus        84 G~~iP~Dg~ii~g~~~vdes~lTGE  108 (536)
T TIGR01512        84 GERVPVDGVVLSGTSTVDESALTGE  108 (536)
T ss_pred             CCEeecceEEEeCcEEEEecccCCC
Confidence            9999999999999988888887774

.

>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus

Probab=99.48  E-value=1.1e-13  Score=93.87  Aligned_cols=62  Identities=32%  Similarity=0.388  Sum_probs=57.2

Q ss_pred             HhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy6873          28 ILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAY   89 (207)
Q Consensus        28 ~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~   89 (207)
                      .++++.+.|||.+|+++|+++||+|+++.++.+++|.++++++.+|+.++|++++++|++++
T Consensus         2 ~l~~~~~~GLs~~~v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~   63 (64)
T smart00831        2 RLQTSLESGLSSEEAARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG   63 (64)
T ss_pred             CCCCCcccCCCHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence            46788767999999999999999999999988999999999999999999999999998763

This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.44  E-value=1.9e-13  Score=113.91  Aligned_cols=79  Identities=11%  Similarity=0.064  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCe-EEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcc
Q psy6873         109 ILALTCIVTVLVGYIFRGFSALL--WFGALLSFL-AYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTP  185 (207)
Q Consensus       109 ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~-~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iP  185 (207)
                      +++++++++.++++++++++++.  +++++.+.+ ++|+|||+++++++++|           +|||++.+  ++||.+|
T Consensus         1 ~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L-----------~~GDiI~l--~~g~~vP   67 (230)
T PF00122_consen    1 VILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSEL-----------VPGDIIIL--KAGDIVP   67 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT------------TTSEEEE--ETTEBES
T ss_pred             CEEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhc-----------cceeeeec--ccccccc
Confidence            35677788888999999998888  777888877 99999999999999999           99999999  9999999


Q ss_pred             cceeeee-ecccCCCC
Q psy6873         186 WDLLNAG-VRYIPSRY  200 (207)
Q Consensus       186 aD~~l~~-~~~~~~~~  200 (207)
                      |||++++ +.....+.
T Consensus        68 aD~~ll~~g~~~vd~s   83 (230)
T PF00122_consen   68 ADGILLESGSAYVDES   83 (230)
T ss_dssp             SEEEEEESSEEEEECH
T ss_pred             cCccceeccccccccc
Confidence            9999999 65444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.43  E-value=1e-12  Score=123.50  Aligned_cols=90  Identities=19%  Similarity=0.179  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECC-eEEEeeCcchhhhhhheeeeeeeccEEEEecc
Q psy6873         103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAE-TNEEKPQDNLWLGIILALTCIVTGSLLSVQQK  179 (207)
Q Consensus       103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g-~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~  179 (207)
                      .|.++++++++++++.++++++++++++.  .+.+..+..++|+|+| +++++++++|           +|||++.+  +
T Consensus        17 ~~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l-----------~~GDiv~v--~   83 (556)
T TIGR01525        17 LVLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEEL-----------QVGDIVIV--R   83 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHC-----------CCCCEEEE--C
Confidence            47889999999999999999999999988  7888899999999995 9999999999           99999999  9


Q ss_pred             CCCCcccceeeeeecccCCCCCCCCC
Q psy6873         180 YSPRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       180 ~Gd~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      +||+|||||++++++....+-.+.|.
T Consensus        84 ~G~~iP~Dg~vi~g~~~vdes~lTGE  109 (556)
T TIGR01525        84 PGERIPVDGVVISGESEVDESALTGE  109 (556)
T ss_pred             CCCEeccceEEEecceEEeehhccCC
Confidence            99999999999999988777777763

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=99.39  E-value=3.3e-12  Score=123.81  Aligned_cols=90  Identities=16%  Similarity=-0.013  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccC
Q psy6873         103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKY  180 (207)
Q Consensus       103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~  180 (207)
                      .|.++++++++++++..++.+++.|+++.  .|.++.|.+++|+|||+++++++++|           +|||+|.+  ++
T Consensus       205 ~~~~a~~i~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l-----------~~GDiv~v--~~  271 (741)
T PRK11033        205 ATAEAAMVLLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADL-----------RPGDVIEV--AA  271 (741)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--CC
Confidence            46778888888899999999999999998  89999999999999999999999999           99999999  99


Q ss_pred             CCCcccceeeeeecccCCCCCCCCC
Q psy6873         181 SPRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       181 Gd~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      |++|||||++++++....+-.+.|.
T Consensus       272 G~~IP~Dg~vi~g~~~vdes~lTGE  296 (741)
T PRK11033        272 GGRLPADGKLLSPFASFDESALTGE  296 (741)
T ss_pred             CCEEecceEEEECcEEeecccccCC
Confidence            9999999999999887777777663

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=99.36  E-value=5.2e-12  Score=126.56  Aligned_cols=125  Identities=22%  Similarity=0.056  Sum_probs=96.8

Q ss_pred             cCCCCCCCcccCcH---HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q psy6873          49 DGPNSLPQKYRINN---VYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFR  125 (207)
Q Consensus        49 ~G~N~l~~~~~~s~---~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~  125 (207)
                      |..|.+...+-..+   ++.+++||..+.++++++.++++++....        +.+.+...+.++++++++.+..++++
T Consensus         1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s--------~~~~~t~~~pL~~v~~~~~~~~~~ed   72 (1057)
T TIGR01652         1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILS--------PTYRGTSIVPLAFVLIVTAIKEAIED   72 (1057)
T ss_pred             CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcC--------CCCccHhHHhHHHHHHHHHHHHHHHH
Confidence            56799987773433   58999999999999999998888774211        11123334445556667888899988


Q ss_pred             HHHHHHHHhhcCCCeEEEEEC-CeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc
Q psy6873         126 GFSALLWFGALLSFLAYLLEA-ETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY  195 (207)
Q Consensus       126 ~~~~~~~l~~~~~~~~~ViR~-g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~  195 (207)
                      ++..++. ++..+..++|+|+ |+++++++++|           +|||+|.+  ++||++|||++++++++
T Consensus        73 ~~r~~~d-~~~n~~~~~v~~~~~~~~~i~~~~l-----------~~GDiv~l--~~g~~iPaD~~ll~ss~  129 (1057)
T TIGR01652        73 IRRRRRD-KEVNNRLTEVLEGHGQFVEIPWKDL-----------RVGDIVKV--KKDERIPADLLLLSSSE  129 (1057)
T ss_pred             HHHHHhH-HHHhCcEEEEECCCCcEEEeeeecc-----------cCCCEEEE--cCCCcccceEEEEeccC
Confidence            8888772 2345678999997 89999999999           99999999  99999999999998654

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=99.28  E-value=5e-11  Score=112.32  Aligned_cols=89  Identities=17%  Similarity=0.072  Sum_probs=75.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEEC-CeEEEeeCcchhhhhhheeeeeeeccEEEEecc
Q psy6873         103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEA-ETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK  179 (207)
Q Consensus       103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~-g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~  179 (207)
                      +|..++++++++.++..++.+.+.|+++.  +|.++.|.+++++|+ |.++++++++|           +|||++.+  +
T Consensus        53 ~~~~~~~i~~~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l-----------~~GDii~v--~  119 (562)
T TIGR01511        53 FFDASAMLITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALL-----------QPGDIVKV--L  119 (562)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHC-----------CCCCEEEE--C
Confidence            44555566667777788888888888887  789999999999986 66789999999           99999999  9


Q ss_pred             CCCCcccceeeeeecccCCCCCCCC
Q psy6873         180 YSPRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       180 ~Gd~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      +|++|||||++++++....+-.+.|
T Consensus       120 ~Ge~iP~Dg~v~~g~~~vdes~lTG  144 (562)
T TIGR01511       120 PGEKIPVDGTVIEGESEVDESLVTG  144 (562)
T ss_pred             CCCEecCceEEEECceEEehHhhcC
Confidence            9999999999999998877777666

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PRK10671 copA copper exporting ATPase; Provisional

Probab=99.19  E-value=2.4e-10  Score=112.13  Aligned_cols=89  Identities=15%  Similarity=0.010  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCC
Q psy6873         104 LWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS  181 (207)
Q Consensus       104 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~G  181 (207)
                      |-.++.+++++.++.+++.+.+.++.+.  +|.++.|..++|+|+|++++++.++|           +|||+|.+  ++|
T Consensus       286 ~~~~~~i~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l-----------~~GD~v~v--~~G  352 (834)
T PRK10671        286 YEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADV-----------QPGMLLRL--TTG  352 (834)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHc-----------CCCCEEEE--cCC
Confidence            3446777777888888888888888887  88999999999999999999999999           99999999  999


Q ss_pred             CCcccceeeeeecccCCCCCCCCC
Q psy6873         182 PRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       182 d~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      ++|||||++++++....+-++.|-
T Consensus       353 ~~iP~Dg~v~~g~~~vdeS~lTGE  376 (834)
T PRK10671        353 DRVPVDGEITQGEAWLDEAMLTGE  376 (834)
T ss_pred             CEeeeeEEEEEceEEEeehhhcCC
Confidence            999999999999988888877774

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.11  E-value=9.9e-10  Score=105.73  Aligned_cols=90  Identities=14%  Similarity=0.096  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEE-CCeEEEeeCcchhhhhhheeeeeeeccEEEEecc
Q psy6873         103 NLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLE-AETNEEKPQDNLWLGIILALTCIVTGSLLSVQQK  179 (207)
Q Consensus       103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR-~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~  179 (207)
                      +|.+++++++++.++..++.+...|+.++  .|.++.|.++++++ ||+.++++.++|           .+||++.+  +
T Consensus       173 yf~~aa~ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v-----------~~GD~v~V--r  239 (713)
T COG2217         173 YFEEAAMLIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEV-----------QVGDIVLV--R  239 (713)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHC-----------CCCCEEEE--C
Confidence            45788888888888888888888888888  89999999998777 565788999999           99999999  9


Q ss_pred             CCCCcccceeeeeecccCCCCCCCCC
Q psy6873         180 YSPRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       180 ~Gd~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      +|++||+||++++|+....+-|+.|-
T Consensus       240 pGE~IPvDG~V~~G~s~vDeS~iTGE  265 (713)
T COG2217         240 PGERIPVDGVVVSGSSSVDESMLTGE  265 (713)
T ss_pred             CCCEecCCeEEEeCcEEeecchhhCC
Confidence            99999999999999999999888884

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=99.05  E-value=2.3e-10  Score=106.13  Aligned_cols=80  Identities=16%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHhh--cCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccc
Q psy6873         112 LTCIVTVLVGYIFRGFSALL--WFGA--LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWD  187 (207)
Q Consensus       112 ~v~~~~~~~~~~~~~~~~~~--~l~~--~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD  187 (207)
                      ++++++.+++.++++++++.  .+.+  +.+..++|+|+| ++++++++|           +|||++.+  ++||+||||
T Consensus         4 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l-----------~~GDiv~v--~~G~~iP~D   69 (499)
T TIGR01494         4 ILVLLFALVEVAAKRAAEDAIRSLKDLLVNPETVTVLRNG-WKEIPASDL-----------VPGDIVLV--KSGEIVPAD   69 (499)
T ss_pred             EhhHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECC-eEEEEHHHC-----------CCCCEEEE--CCCCEeeee
Confidence            34566677788888888888  6776  778899999999 899999999           99999999  999999999


Q ss_pred             eeeeeecccCCCCCCCCC
Q psy6873         188 LLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       188 ~~l~~~~~~~~~~~~~~~  205 (207)
                      |++++++....+..+.|-
T Consensus        70 g~vl~g~~~vdes~LTGE   87 (499)
T TIGR01494        70 GVLLSGSCFVDESNLTGE   87 (499)
T ss_pred             EEEEEccEEEEcccccCC
Confidence            999999877777777663

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>PLN03190 aminophospholipid translocase; Provisional

Probab=98.99  E-value=3.5e-09  Score=107.09  Aligned_cols=125  Identities=16%  Similarity=0.029  Sum_probs=91.6

Q ss_pred             hcCCCCCCCcccCcHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q psy6873          48 KDGPNSLPQKYRINNV----YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI  123 (207)
Q Consensus        48 ~~G~N~l~~~~~~s~~----~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~  123 (207)
                      +|..|.+...+ -++|    +.+++||..+.++.+++.+++.++-...        +...+...+-++++++++.+-..+
T Consensus        86 ~f~~N~i~TsK-Yt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s--------~~~~~t~~~PL~~vl~v~~ike~~  156 (1178)
T PLN03190         86 EFAGNSIRTAK-YSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLA--------VFGRGASILPLAFVLLVTAVKDAY  156 (1178)
T ss_pred             cCCCCeeeccc-cccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcc--------cCCcchHHHHHHHHHHHHHHHHHH
Confidence            57788888766 5555    4556777777777777777776543211        112244455666667777777777


Q ss_pred             HHHHHHHHHHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecc
Q psy6873         124 FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY  195 (207)
Q Consensus       124 ~~~~~~~~~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~  195 (207)
                      .+++..++. +...+..++|+|+|.++++++++|           +|||+|.+  ++||++|||++++++++
T Consensus       157 Ed~~r~k~d-~~~N~~~~~v~~~~~~~~i~~~~i-----------~vGDiv~v--~~ge~iPaD~~ll~Ss~  214 (1178)
T PLN03190        157 EDWRRHRSD-RIENNRLAWVLVDDQFQEKKWKDI-----------RVGEIIKI--QANDTLPCDMVLLSTSD  214 (1178)
T ss_pred             HHHHHHHhH-HhhcCcEEEEEECCeEEEEeHHHC-----------CCCCEEEE--CCCCEeeeeEEEEeccC
Confidence            777777661 123467899999999999999999           99999999  99999999999998554

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=98.59  E-value=5.8e-08  Score=89.43  Aligned_cols=117  Identities=17%  Similarity=0.092  Sum_probs=83.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhhhc--CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCC-CeEEEE
Q psy6873          70 IFRGFSALLWFGALLSFLAYLLEAETN--EEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLS-FLAYLL  144 (207)
Q Consensus        70 ~~~p~~~~Ll~~a~~s~~~~~~~~~~~--~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~-~~~~Vi  144 (207)
                      .+||.+++.++.++++.++.++....+  +.+...+....+++++.+++..+-+.+.|+|.+.+  +|++... ..++++
T Consensus        30 ~kNPVMFvv~vg~~lt~~l~~~~~lfg~~~~~~~f~~~i~~~L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l  109 (681)
T COG2216          30 VKNPVMFVVEVGSILTTFLTIFPDLFGGTGGSRLFNLAITIILWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLL  109 (681)
T ss_pred             hhCCeEEeehHHHHHHHHHHHhhhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHh
Confidence            456766666666666664433321111  22333445556667777777778888888887777  7766543 457888


Q ss_pred             EC-CeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCC
Q psy6873         145 EA-ETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSR  199 (207)
Q Consensus       145 R~-g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~  199 (207)
                      ++ |..+.+++.+|           ..||+|.+  ++||.||+||.+++|..-..+
T Consensus       110 ~~~g~~~~v~st~L-----------k~gdiV~V--~age~IP~DGeVIeG~asVdE  152 (681)
T COG2216         110 RADGSIEMVPATEL-----------KKGDIVLV--EAGEIIPSDGEVIEGVASVDE  152 (681)
T ss_pred             cCCCCeeecccccc-----------ccCCEEEE--ecCCCccCCCeEEeeeeecch
Confidence            86 88999999999           99999999  999999999999999765544

>KOG0207|consensus

Probab=98.20  E-value=7.9e-06  Score=79.66  Aligned_cols=86  Identities=16%  Similarity=0.121  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCe-EEEeeCcchhhhhhheeeeeeeccEEEEeccCCC
Q psy6873         106 LGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSP  182 (207)
Q Consensus       106 ~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~-~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd  182 (207)
                      .+.+++..+.+.-.++....+++...  .|..+.|..|.++.+|+ .++|+.+.+           -+||++.+  .+|+
T Consensus       343 t~~MLi~fi~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lv-----------q~gdivkV--~pG~  409 (951)
T KOG0207|consen  343 TSPMLITFITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLV-----------QVGDIVKV--KPGE  409 (951)
T ss_pred             ccHHHHHHHHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeee-----------ccCCEEEE--CCCC
Confidence            33333334444444444444444444  67778889999999996 788999999           99999999  9999


Q ss_pred             CcccceeeeeecccCCCCCCCC
Q psy6873         183 RTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       183 ~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      +||+||++++|+.-..+-...|
T Consensus       410 kiPvDG~Vv~Gss~VDEs~iTG  431 (951)
T KOG0207|consen  410 KIPVDGVVVDGSSEVDESLITG  431 (951)
T ss_pred             ccccccEEEeCceeechhhccC
Confidence            9999999999997666555544

>KOG0206|consensus

Probab=97.99  E-value=9.8e-06  Score=81.46  Aligned_cols=129  Identities=16%  Similarity=0.043  Sum_probs=96.5

Q ss_pred             HHHhcCCCCCCCcccCcHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q psy6873          45 RLEKDGPNSLPQKYRINNV----YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLV  120 (207)
Q Consensus        45 r~~~~G~N~l~~~~~~s~~----~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~  120 (207)
                      +...|-.|.++..+ .+++    +.+++||..+-+...++.++++++-..         +...+...+-+++++.++++-
T Consensus        28 ~~~~~~~N~i~TtK-Yt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip~~---------~~~~~~~~~pl~~vl~~t~iK   97 (1151)
T KOG0206|consen   28 PQRKYCDNRISTTK-YTLFTFLPKNLFEQFHRVANLYFLFIAILQFIPLS---------PFNPYTTLVPLLFVLGITAIK   97 (1151)
T ss_pred             hhccccCCeeEEEe-ccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCccc---------ccCccceeeceeeeehHHHHH
Confidence            55589999998765 3333    567788888888888888888876521         112355556677777788888


Q ss_pred             HHHHHHHHHHHHHhhcCCCeEEEEECCe-EEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccC
Q psy6873         121 GYIFRGFSALLWFGALLSFLAYLLEAET-NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP  197 (207)
Q Consensus       121 ~~~~~~~~~~~~l~~~~~~~~~ViR~g~-~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~  197 (207)
                      ..+.+++..++ =++.+...+.|+|++. ..+...+++           .+||+|.+  ..++.+|||.+++++++-.
T Consensus        98 d~~eD~rR~~~-D~~iN~~~~~v~~~~~~~~~~~wk~~-----------~vGd~v~v--~~~~~~paD~llLsss~~~  161 (1151)
T KOG0206|consen   98 DAIEDYRRHKQ-DKEVNNRKVEVLRGDGCFVEKKWKDV-----------RVGDIVRV--EKDEFVPADLLLLSSSDED  161 (1151)
T ss_pred             HHHhhhhhhhc-cHHhhcceeEEecCCceeeeecccee-----------eeeeEEEe--ccCCccccceEEecCCCCC
Confidence            88888777766 2234457788998644 688899999           99999999  9999999999999987643

>KOG0210|consensus

Probab=97.92  E-value=4.6e-05  Score=72.81  Aligned_cols=131  Identities=15%  Similarity=0.046  Sum_probs=74.4

Q ss_pred             HHHHhcCCCCCCCccc--CcH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q psy6873          44 RRLEKDGPNSLPQKYR--INN-VYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLV  120 (207)
Q Consensus        44 ~r~~~~G~N~l~~~~~--~s~-~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~  120 (207)
                      .++++|-+|.+...+-  -+| ...++++|+.+++..+++.+...+.-....    + ....+|.--+.++.+.++-..+
T Consensus        74 ~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~i----g-~l~ty~~pl~fvl~itl~keav  148 (1051)
T KOG0210|consen   74 YRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKI----G-YLSTYWGPLGFVLTITLIKEAV  148 (1051)
T ss_pred             cccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchhee----c-chhhhhHHHHHHHHHHHHHHHH
Confidence            4666777888776542  122 245566666666654444433333211100    0 0112333333444444555555


Q ss_pred             HHHHHHHHHHHHHhhcCCCe-EEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccC
Q psy6873         121 GYIFRGFSALLWFGALLSFL-AYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIP  197 (207)
Q Consensus       121 ~~~~~~~~~~~~l~~~~~~~-~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~  197 (207)
                      .-+++++..+.    ..... .+.-|+|...+ +++++           .+||+|.+  .++++||||.+++..++-.
T Consensus       149 dd~~r~~rd~~----~Nse~y~~ltr~~~~~~-~Ss~i-----------~vGDvi~v--~K~~RVPADmilLrTsd~s  208 (1051)
T KOG0210|consen  149 DDLKRRRRDRE----LNSEKYTKLTRDGTRRE-PSSDI-----------KVGDVIIV--HKDERVPADMILLRTSDKS  208 (1051)
T ss_pred             HHHHHHHhhhh----hhhhhheeeccCCcccc-ccccc-----------ccccEEEE--ecCCcCCcceEEEEccCCC
Confidence            55555544332    11222 33347775444 89999           99999999  9999999999999987644

>KOG0203|consensus

Probab=96.03  E-value=0.0031  Score=61.73  Aligned_cols=125  Identities=26%  Similarity=0.317  Sum_probs=86.7

Q ss_pred             cCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHH-HHHHH-HHHHHHHHHHhhhhh
Q psy6873          18 HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFS-ALLWF-GALLSFLAYLLEAET   95 (207)
Q Consensus        18 ~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~-~~Ll~-~a~~s~~~~~~~~~~   95 (207)
                      .+.+++++.++++.+ +|-++.+|+++|..+.-.+.++..++...+..-.++..+|.. ..=|+ +.-=+|-...+.   
T Consensus        24 ~~~~l~~~k~e~~~~-~H~~~~~eL~~r~~t~~~~Glt~~~A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~il---   99 (1019)
T KOG0203|consen   24 KKKELDDLKKEVSMD-DHKLSVDELCERYGTSVSQGLTSQEAAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSIL---   99 (1019)
T ss_pred             hhhhHHHHhhheeec-cccCCHHHHHHHhcCChhhcccHHHHHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHH---
Confidence            445688999999998 699999999999999999999988888888888888877632 11111 222222222221   


Q ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEE
Q psy6873          96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLS  175 (207)
Q Consensus        96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~  175 (207)
                              .|.++++|++       .|.-                    -..+....+.++||+|++|..+.++.|-..+
T Consensus       100 --------l~~~a~l~~~-------~y~~--------------------~~s~~~~~~~~nly~giiL~~vv~vtg~~~~  144 (1019)
T KOG0203|consen  100 --------LWIGAILCFV-------AYGI--------------------QASTEDDPSDDNLYLGIVLAAVVIVTGLFSY  144 (1019)
T ss_pred             --------HHHHHHHHHH-------HHhh--------------------hcccCCCCCCcceEEEEEEEEEEEEEecCCC
Confidence                    4556666665       4431                    1111223678899999999999999999998


Q ss_pred             EeccCC
Q psy6873         176 VQQKYS  181 (207)
Q Consensus       176 l~~~~G  181 (207)
                      .|++.+
T Consensus       145 ~qe~ks  150 (1019)
T KOG0203|consen  145 YQEAKS  150 (1019)
T ss_pred             ccchhh
Confidence            875554

>KOG4383|consensus

Probab=86.36  E-value=1.7  Score=42.56  Aligned_cols=74  Identities=14%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh-------hc------------CCC-----e------EEEEECCeE
Q psy6873         103 NLWLGIILALTCIVTVLVGYIFRGFSALL---WFG-------AL------------LSF-----L------AYLLEAETN  149 (207)
Q Consensus       103 ~~~~~~ii~~v~~~~~~~~~~~~~~~~~~---~l~-------~~------------~~~-----~------~~ViR~g~~  149 (207)
                      .+..+.++.+.++.+.++..+|++-.+..   +++       ++            +++     .      -...|||..
T Consensus        87 gl~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGhl  166 (1354)
T KOG4383|consen   87 GLSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGHL  166 (1354)
T ss_pred             eechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCee
Confidence            46667777777788888888876643332   111       11            111     0      124699999


Q ss_pred             EEeeCcchhhhhhheeeeeeeccEEEEeccCCCCccccee
Q psy6873         150 EEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLL  189 (207)
Q Consensus       150 ~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~  189 (207)
                      .+++..-|           |-|||+.+  ++|+.-||.++
T Consensus       167 m~lP~~LL-----------VeGDiIa~--RPGQeafan~~  193 (1354)
T KOG4383|consen  167 MELPRILL-----------VEGDIIAF--RPGQEAFANCE  193 (1354)
T ss_pred             eecceeEE-----------EeccEEEe--cCCcccccccc
Confidence            99999999           99999999  99999998654

>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length

Probab=80.29  E-value=1.5  Score=24.88  Aligned_cols=15  Identities=53%  Similarity=0.716  Sum_probs=13.5

Q ss_pred             CCCCCHHHHHHHHHh
Q psy6873          34 DRGLSELEVKRRLEK   48 (207)
Q Consensus        34 ~~GLs~~ev~~r~~~   48 (207)
                      +||||.+|+.+|++.
T Consensus        13 eh~ls~ee~~~RL~~   27 (28)
T PF12368_consen   13 EHGLSEEEVAERLAA   27 (28)
T ss_pred             hcCCCHHHHHHHHHc
Confidence            589999999999975

The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
2zxe_A	1028	Crystal Structure Of The Sodium - Potassium Pump In		2e-19
3n23_A	992	Crystal Structure Of The High Affinity Complex Betw		9e-19
3b8e_A	998	Crystal Structure Of The Sodium-Potassium Pump Leng		1e-18
3ixz_A	1034	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		2e-09

>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/199 (33%), Positives = 96/199 (48%), Gaps = 24/199 (12%)
Query: 8   DLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILV 67
           +LK EV +D+H + L+EL++   T   RGL+    K  L +DGPNSL             
Sbjct: 39  ELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFC 98
Query: 68  GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY----- 122
             +F GFS LLW GA+L FLAY ++A T +E   DNL+LG++L+   IVT    Y     
Sbjct: 99  RQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAK 158
Query: 123 ---IFRGFSALLWFGALL-----------SFLAY--LLEAETNEEKPQDNLWLGIILALT 166
              I   F  ++   AL+            F+    L+E +  +  P D   L II A  
Sbjct: 159 SSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPAD---LRIISAHG 215
Query: 167 CIVTGSLLSVQQKYSPRTP 185
           C V  S L+ + +   R+P
Sbjct: 216 CKVDNSSLTGESEPQTRSP 234

>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 1   MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 60
Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 61  FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 120
Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 121 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 177
Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
             C V  S L+ + +   R+P
Sbjct: 178 NGCKVDNSSLTGESEPQTRSP 198

>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 6   LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYI 65
           + +LK EV +D+H + L+EL+    T   RGL+       L +DGPN+L           
Sbjct: 7   MDELKKEVSMDDHKLSLDELHRKYGTDLSRGLTPARAAEILARDGPNALTPPPTTPEWVK 66
Query: 66  LVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGY--- 122
               +F GFS LLW GA+L FLAY ++A T EE   DNL+LG++L+   I+T    Y   
Sbjct: 67  FCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITGCFSYYQE 126
Query: 123 -----IFRGFSALLWFGALL-------------SFLAYLLEAETNEEKPQDNLWLGIILA 164
                I   F  ++   AL+               +  L+E +  +  P D   L II A
Sbjct: 127 AKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPAD---LRIISA 183
Query: 165 LTCIVTGSLLSVQQKYSPRTP 185
             C V  S L+ + +   R+P
Sbjct: 184 NGCKVDNSSLTGESEPQTRSP 204

>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 5   QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVY 64
           +L ++K E++I++H + + EL     T   +GLS       L +DGPN+L          
Sbjct: 41  KLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYV 100
Query: 65  ILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI- 123
                +  G   L+W  A +  +A+ ++A   +    DNL+L + L    +VT   GY  
Sbjct: 101 KFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQ 160
Query: 124 -FRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILAL 165
            F+  + +  F  L+   A ++      +   D L +G ++ +
Sbjct: 161 EFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEM 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	2e-31
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	7e-30
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	1e-12
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	2e-11
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	2e-08

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score =  119 bits (300), Expect = 2e-31
 Identities = 49/120 (40%), Positives = 67/120 (55%)

Query: 4   AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
             L +LK EV +D+H + L+EL++   T   RGL+    K  L +DGPNSL         
Sbjct: 35  RDLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEW 94

Query: 64  YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
                 +F GFS LLW GA+L FLAY ++A T +E   DNL+LG++L+   IVT    Y 
Sbjct: 95  IKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYY 154

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score =  115 bits (289), Expect = 7e-30
 Identities = 32/120 (26%), Positives = 55/120 (45%)

Query: 4   AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
            +L ++K E++I++H + + EL     T   +GLS       L +DGPN+L         
Sbjct: 40  EKLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEY 99

Query: 64  YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
                 +  G   L+W  A +  +A+ ++A   +    DNL+L + L    +VT   GY 
Sbjct: 100 VKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYY 159

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 9/120 (7%)

Query: 4   AQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNV 63
           + L D+KNE  +D   IP+EE++  L    + GL+  E + R++  GPN L +K + + +
Sbjct: 2   SSLEDIKNET-VDLEKIPIEEVFQQLKCSRE-GLTTQEGEDRIQIFGPNKLEEK-KESKL 58

Query: 64  YILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
              +G+++   S ++   A+++      +       P D      I+ L  ++   + +I
Sbjct: 59  LKFLGFMWNPLSWVMEMAAIMAIALANGDGR-----PPDWQDFVGIICLL-VINSTISFI 112

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 23/116 (19%)

Query: 18  HLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRI----------NNVYILV 67
           H    EE  +        GL+  +VKR LEK G N LP +              ++ + +
Sbjct: 6   HSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRI 65

Query: 68  GYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
                     L   A +SF+  L   E  EE     +   +IL +  I   +VG  
Sbjct: 66  ----------LLLAACISFV--LAWFEEGEETITAFVEPFVILLIL-IANAIVGVW 108

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 2   DVAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRIN 61
           D     + + E       +  E++   L T    GL+  EV +R  K G N + ++ + N
Sbjct: 56  DGHDAEEEEEEATPGGGRVVPEDM---LQTDTRVGLTSEEVVQRRRKYGLNQMKEE-KEN 111

Query: 62  NVYILVGYIFRG-FSALLWFGALLSFL 87
           +    +G+ F G    ++   A+L+  
Sbjct: 112 HFLKFLGF-FVGPIQFVMEGAAVLAAG 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	100.0
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.97
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.95
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.93
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.93
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.33
2hc8_A	113	PACS, cation-transporting ATPase, P-type; copper,	99.29
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	99.28
2kij_A	124	Copper-transporting ATPase 1; actuator, menkes dis	99.28
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	99.27

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=100.00  E-value=3.8e-33  Score=275.38  Aligned_cols=189  Identities=24%  Similarity=0.360  Sum_probs=170.1

Q ss_pred             hhHHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHH
Q psy6873           3 VAQLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGA   82 (207)
Q Consensus         3 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a   82 (207)
                      ++++++++++.+++||.++.+++.+.|++++++|||.+|+++|+++||+|+++.++++++|++|+++|++|+.++|++++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~GLs~~ea~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa  118 (1034)
T 3ixz_A           39 KEKLENMKKEMEINDHQLSVAELEQKYQTSATKGLSASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAA  118 (1034)
T ss_pred             hhhHHHHhhhcCcchhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHH
Confidence            46789999999999999999999999999988999999999999999999999998899999999999999999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhh
Q psy6873          83 LLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLG  160 (207)
Q Consensus        83 ~~s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~  160 (207)
                      ++|++.+++....++....++++++++++++++++++++++||+|++++  +++++.+.+++|+|||+++++++++|   
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eL---  195 (1034)
T 3ixz_A          119 AICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQL---  195 (1034)
T ss_pred             HHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHC---
Confidence            9999887654333333334578999999999999999999999999998  89999999999999999999999999   


Q ss_pred             hhheeeeeeeccEEEEeccCCCCcccceeeeeeccc-CCCCCCCC
Q psy6873         161 IILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSG  204 (207)
Q Consensus       161 ~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~  204 (207)
                              ||||+|.+  ++||+|||||++++++++ ..+-++.|
T Consensus       196 --------v~GDiV~l--~~Gd~VPAD~~ll~~~~l~VdES~LTG  230 (1034)
T 3ixz_A          196 --------VVGDLVEM--KGGDRVPADIRILQAQGRKVDNSSLTG  230 (1034)
T ss_pred             --------CCCcEEEE--cCCceecCCeEEEEeCCceEEecccCC
Confidence                    99999999  999999999999999864 45555544

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.97  E-value=8.1e-32  Score=265.76  Aligned_cols=178  Identities=34%  Similarity=0.517  Sum_probs=161.9

Q ss_pred             HHhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHH
Q psy6873           5 QLRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALL   84 (207)
Q Consensus         5 ~l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~   84 (207)
                      ++++++++.+++||.++.+++.+.|+++.++|||.+|+++|+++||+|+++.++++++|+.++++|++||.++|++++++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~l  115 (1028)
T 2zxe_A           36 DLDELKKEVSMDDHKLSLDELHNKYGTDLTRGLTNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAIL  115 (1028)
T ss_dssp             -CCTTTTSCCCCCSSSCHHHHHHHHTCCSSSCBCHHHHHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHH
T ss_pred             hHHHHhhhcCcchhhCCHHHHHHHhCcCccCCCCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            46788888899999999999999999998799999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhh
Q psy6873          85 SFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGII  162 (207)
Q Consensus        85 s~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~  162 (207)
                      |++++.+....++.+..++|+++++++++++++++++++|++++++.  +|+++.+.+++|+|||++++|++++|     
T Consensus       116 s~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~L-----  190 (1028)
T 2zxe_A          116 CFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFV-----  190 (1028)
T ss_dssp             HHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGC-----
T ss_pred             HHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHC-----
Confidence            99887665332222334579999999999999999999999998887  88999999999999999999999999     


Q ss_pred             heeeeeeeccEEEEeccCCCCcccceeeeeecc
Q psy6873         163 LALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRY  195 (207)
Q Consensus       163 ~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~  195 (207)
                            ||||+|.+  ++||+|||||+++++++
T Consensus       191 ------v~GDiV~l--~~Gd~IPaD~~ll~g~~  215 (1028)
T 2zxe_A          191 ------VAGDLVEV--KGGDRIPADLRIISAHG  215 (1028)
T ss_dssp             ------CTTCEEEE--ETTCBCCSEEEEEEEEE
T ss_pred             ------CcCCEEEE--CCCCEeeceEEEEeeCc
Confidence                  99999999  99999999999999974

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.95  E-value=6.3e-28  Score=237.34  Aligned_cols=163  Identities=19%  Similarity=0.228  Sum_probs=145.7

Q ss_pred             cccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6873          16 DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAET   95 (207)
Q Consensus        16 ~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~   95 (207)
                      +||..+.+++.+.|+++.++|||.+|+++|+++||+|+++.++++++|+.++++|++|+++++++++++|++++....  
T Consensus         4 ~~~~~~~~~~~~~l~~~~~~GLs~~e~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~--   81 (995)
T 3ar4_A            4 AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEE--   81 (995)
T ss_dssp             TGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSCC--
T ss_pred             hhhhCCHHHHHHHhCCCcccCCCHHHHHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence            589999999999999998889999999999999999999998889999999999999999999999999988764321  


Q ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCe--EEEeeCcchhhhhhheeeeeeec
Q psy6873          96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAET--NEEKPQDNLWLGIILALTCIVTG  171 (207)
Q Consensus        96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~--~~~i~~~~L~~~~~~~~~~~V~G  171 (207)
                       ++.....|++++++++++++++.++++||++++++  +|+++.+.+++|+|||+  .+++++++|           |||
T Consensus        82 -~~~~~~~~~~~~~i~~~~~~~~~i~~~qe~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~l-----------v~G  149 (995)
T 3ar4_A           82 -GEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDI-----------VPG  149 (995)
T ss_dssp             -SSGGGSSSHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGC-----------CTT
T ss_pred             -cccchhhHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHC-----------CCC
Confidence             00112368899999999999999999999999887  88999999999999987  689999999           999


Q ss_pred             cEEEEeccCCCCcccceeeeeec
Q psy6873         172 SLLSVQQKYSPRTPWDLLNAGVR  194 (207)
Q Consensus       172 Div~l~~~~Gd~iPaD~~l~~~~  194 (207)
                      |+|.+  ++||+|||||++++++
T Consensus       150 DiV~l--~~Gd~IPaD~~ll~~~  170 (995)
T 3ar4_A          150 DIVEV--AVGDKVPADIRILSIK  170 (995)
T ss_dssp             CEEEE--ETTCBCCSEEEEEEEC
T ss_pred             CEEEE--CCCCcccccEEEEEEe
Confidence            99999  9999999999997643

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.93  E-value=6.2e-26  Score=221.34  Aligned_cols=152  Identities=18%  Similarity=0.164  Sum_probs=136.8

Q ss_pred             HHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhcCCCCcchhH
Q psy6873          26 YSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAETNEEKPQDNLW  105 (207)
Q Consensus        26 ~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~~~~~~~~~~~  105 (207)
                      .+.|+++..+|||.+|+++|+++||+|+++.++ +++|..|+++|.+|+.+++++++++++++             +.|.
T Consensus        77 ~~~l~t~~~~GLs~~ea~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~-------------g~~~  142 (920)
T 1mhs_A           77 EDMLQTDTRVGLTSEEVVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGL-------------EDWV  142 (920)
T ss_dssp             STTTTTCCCCCCCSHHHHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTC-------------SCSS
T ss_pred             HHHhCCCcCCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhHH
Confidence            456788777899999999999999999999665 88999999999999999999888888764             2588


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCC
Q psy6873         106 LGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPR  183 (207)
Q Consensus       106 ~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~  183 (207)
                      ++++++++++++++++++|+++++++  +|+++.+.+++|+|||+++++++++|           ||||+|.+  ++||+
T Consensus       143 ~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~~~a~V~RdG~~~~I~~~eL-----------v~GDiV~l--~~Gd~  209 (920)
T 1mhs_A          143 DFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVVLRDGTLKEIEAPEV-----------VPGDILQV--EEGTI  209 (920)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSSCEEECSSSEEECCTTTS-----------CTTSEEEE--CTTCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEECCEEEEEEHHHc-----------CCCCEEEe--CCCCc
Confidence            88888899999999999999999998  78889999999999999999999999           99999999  99999


Q ss_pred             cccceeeeeecc--cCCCCCCCC
Q psy6873         184 TPWDLLNAGVRY--IPSRYPKSG  204 (207)
Q Consensus       184 iPaD~~l~~~~~--~~~~~~~~~  204 (207)
                      |||||++++++.  ...+-++.|
T Consensus       210 VPaDg~ll~g~~~l~VDES~LTG  232 (920)
T 1mhs_A          210 IPADGRIVTDDAFLQVDQSALTG  232 (920)
T ss_dssp             CSSEEEEEEESSCCEEBCTTTSS
T ss_pred             cccceEEEecCceeeeeccccCC
Confidence            999999999985  666666666

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.93  E-value=9.4e-29  Score=240.60  Aligned_cols=178  Identities=20%  Similarity=0.242  Sum_probs=151.2

Q ss_pred             HhhhccccCccccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHH
Q psy6873           6 LRDLKNEVDIDEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLS   85 (207)
Q Consensus         6 l~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s   85 (207)
                      +++.+++ +.++|.++.+++.+.|+++ .+|||.+|+++|+++||+|+++.++ ++.|..|+++|++|+.++|+++++++
T Consensus         4 ~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~GLs~~e~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis   80 (885)
T 3b8c_A            4 LEDIKNE-TVDLEKIPIEEVFQQLKCS-REGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMA   80 (885)
T ss_dssp             ---------CCCSSSSTTCCTTTSSSC-SSCSTHHHHHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGG
T ss_pred             hhhhhhc-chhhHhCCHHHHHHHhCCC-CCCCCHHHHHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555554 5789999999999999998 5899999999999999999998877 88889999999999999999999998


Q ss_pred             HHHHHhhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhh
Q psy6873          86 FLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIIL  163 (207)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~  163 (207)
                      ++++...      .....|.++++++++++++..++++|+++++++  +|+++.+.+++|+|||+++++++++|      
T Consensus        81 ~~l~~~~------~~~~~~~~~~~I~~~v~i~~~l~~~qe~ka~~al~~L~~~~~~~a~V~RdG~~~~I~~~~L------  148 (885)
T 3b8c_A           81 IALANGD------GRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAIL------  148 (885)
T ss_dssp             GGSSCCT------TSCSCCTTHHHHHHHTTTTTTTTTTTTTTTTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTT------
T ss_pred             HHHHhcc------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCEEEEEEHHHC------
Confidence            7764211      112358888888888899999999999999888  88889999999999999999999999      


Q ss_pred             eeeeeeeccEEEEeccCCCCcccceeeeeeccc-CCCCCCCCC
Q psy6873         164 ALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYI-PSRYPKSGA  205 (207)
Q Consensus       164 ~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~-~~~~~~~~~  205 (207)
                           ||||+|.+  ++||+|||||++++++.+ ..+-++.|-
T Consensus       149 -----v~GDiV~l--~~Gd~IPaDg~ll~g~~l~VdES~LTGE  184 (885)
T 3b8c_A          149 -----VPGDIVSI--KLGDIIPADARLLEGDPLKVDQSALTGE  184 (885)
T ss_dssp             -----CTTSBCCC--CSSCCCSSCCCCCCSSCBCCCCCSTTCC
T ss_pred             -----CCCCEEEE--CCCCEEeeceEEEEcCcccccccccCCC
Confidence                 99999999  999999999999999984 777777663

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=99.33  E-value=3.2e-12  Score=122.40  Aligned_cols=90  Identities=17%  Similarity=0.133  Sum_probs=78.4

Q ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEE-CCeEEEeeCcchhhhhhheeeeeeeccEEEEec
Q psy6873         103 NLWLG-IILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLE-AETNEEKPQDNLWLGIILALTCIVTGSLLSVQQ  178 (207)
Q Consensus       103 ~~~~~-~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR-~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~  178 (207)
                      .|+++ ++++++++++..++.++++++.+.  +|.++.+.+++|+| ||+++++++++|           +|||+|.+  
T Consensus       186 ~yfe~a~~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l-----------~~GDiv~v--  252 (736)
T 3rfu_A          186 VYFEAAAVITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNV-----------AVGDLLRV--  252 (736)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTC-----------CTTCEECC--
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhC-----------CCCCEEEE--
Confidence            35554 466677888888888888887776  78899999999998 999999999999           99999999  


Q ss_pred             cCCCCcccceeeeeecccCCCCCCCCC
Q psy6873         179 KYSPRTPWDLLNAGVRYIPSRYPKSGA  205 (207)
Q Consensus       179 ~~Gd~iPaD~~l~~~~~~~~~~~~~~~  205 (207)
                      ++||+|||||++++++....+-++.|-
T Consensus       253 ~~Ge~IPaDg~vl~G~~~VDES~LTGE  279 (736)
T 3rfu_A          253 RPGEKIPVDGEVQEGRSFVDESMVTGE  279 (736)
T ss_dssp             CSSEECCSCEEECSSCEEEECSSSTTC
T ss_pred             CCCCcccccEEEEECceEeeecccCCc
Confidence            999999999999999998888888774

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F

Probab=99.29  E-value=1.4e-12  Score=97.58  Aligned_cols=60  Identities=15%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCCCCCCCC
Q psy6873         132 WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       132 ~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      +|.++.+..++|+|+|+++++++++|           +|||++.+  ++||+|||||+++++.....+-++.|
T Consensus         5 ~L~~l~p~~a~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~G~~iPaDg~v~~g~~~vdeS~LTG   64 (113)
T 2hc8_A            5 KLVGLQAKTAVVIRDGKEIAVPVEEV-----------AVGDIVIV--RPGEKIPVDGVVVEGESYVDESMISG   64 (113)
T ss_dssp             HHHHHSCSEEEEEETTEEEEEEGGGC-----------CTTCEEEE--CTTCBCCSEEEEEECCEEEECHHHHC
T ss_pred             HHhcCCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--CCCCEEeeeEEEEEceEEEEccccCC
Confidence            57788999999999999999999999           99999999  99999999999999986655554444

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.28  E-value=2.6e-12  Score=121.34  Aligned_cols=88  Identities=11%  Similarity=0.055  Sum_probs=74.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCC
Q psy6873         104 LWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS  181 (207)
Q Consensus       104 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~G  181 (207)
                      |..+++++++++++..++.++++|+.+.  ++.++.+.+++|+|||+++++++++|           +|||+|.+  ++|
T Consensus        96 ~~~~~~i~~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~G  162 (645)
T 3j08_A           96 YETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEV-----------AVGDIVIV--RPG  162 (645)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGC-----------CTTCEEEE--CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHC-----------CCCCEEEE--CCC
Confidence            4446667777777777777777776666  88899999999999999999999999           99999999  999


Q ss_pred             CCcccceeeeeecccCCCCCCCC
Q psy6873         182 PRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       182 d~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      |+|||||++++++....+-++.|
T Consensus       163 e~IPaDg~vl~G~~~VdeS~LTG  185 (645)
T 3j08_A          163 EKIPVDGVVVEGESYVDESMISG  185 (645)
T ss_dssp             CBCCSEEEEEECCEEEECHHHHC
T ss_pred             CEEeeEEEEEECcEEEEcccccC
Confidence            99999999999988776665555

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}

Probab=99.28  E-value=2.2e-12  Score=97.94  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=56.8

Q ss_pred             HHHHH--HHhhcCCCeEEEEECCe------EEEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeecccCC
Q psy6873         127 FSALL--WFGALLSFLAYLLEAET------NEEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVRYIPS  198 (207)
Q Consensus       127 ~~~~~--~l~~~~~~~~~ViR~g~------~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~~~~~  198 (207)
                      +++++  +|.++.+..++|+|+|.      ++++++++|           +|||+|.+  ++||+|||||++++++....
T Consensus         4 ka~~~l~~L~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l-----------~~GDiv~v--~~G~~iPaDg~vi~g~~~vd   70 (124)
T 2kij_A            4 TMSEALAKLISLQATEATIVTLDSDNILLSEEQVDVELV-----------QRGDIIKV--VPGGKFPVDGRVIEGHSMVD   70 (124)
T ss_dssp             --CCHHHHHHHTCCSEEEEEECSSSTTCCEEEEEETTTC-----------CTTCEEEC--CTTCBCSSCEEECSCCCEEE
T ss_pred             HHHHHHHHHhccCCCEEEEEECCCCCceeEEEEEeHHHC-----------CCCCEEEE--CCCCEEEeeEEEEEccEEEE
Confidence            34444  78899999999999764      678999999           99999999  99999999999999998888


Q ss_pred             CCCCCCC
Q psy6873         199 RYPKSGA  205 (207)
Q Consensus       199 ~~~~~~~  205 (207)
                      +-++.|-
T Consensus        71 eS~LTGE   77 (124)
T 2kij_A           71 ESLITGE   77 (124)
T ss_dssp             CTTTTCC
T ss_pred             eccccCC
Confidence            8888774

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.27  E-value=4.6e-12  Score=121.03  Aligned_cols=88  Identities=11%  Similarity=0.055  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCeEEEEECCeEEEeeCcchhhhhhheeeeeeeccEEEEeccCC
Q psy6873         104 LWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTGSLLSVQQKYS  181 (207)
Q Consensus       104 ~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~ViR~g~~~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~G  181 (207)
                      |..+++++++++++..++.++++|+.+.  ++.++.+..++|+|||+++++++++|           +|||+|.+  ++|
T Consensus       174 ~~~~~~i~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l-----------~~GDiv~v--~~G  240 (723)
T 3j09_A          174 YETSVLLLAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEV-----------AVGDIVIV--RPG  240 (723)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGC-----------CTTCEEEE--CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHC-----------CCCCEEEE--CCC
Confidence            3445666667777777777777776665  78889999999999999999999999           99999999  999


Q ss_pred             CCcccceeeeeecccCCCCCCCC
Q psy6873         182 PRTPWDLLNAGVRYIPSRYPKSG  204 (207)
Q Consensus       182 d~iPaD~~l~~~~~~~~~~~~~~  204 (207)
                      |+|||||++++++....+-++.|
T Consensus       241 e~IPaDg~vl~G~~~VdeS~LTG  263 (723)
T 3j09_A          241 EKIPVDGVVVEGESYVDESMISG  263 (723)
T ss_dssp             CBCCSEEEEEECCEEEECHHHHC
T ss_pred             CEEeeEEEEEECCeEEecccccC
Confidence            99999999999988776666555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1wpga4	472	f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP	1e-16

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.5 bits (185), Expect = 1e-16
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 3/108 (2%)

Query: 16  DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFS 75
             H    EE  +        GL+  +VKR LEK G N LP +   +   +++        
Sbjct: 3   AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLV 62

Query: 76  ALLWFGALLSFLAYLLEAETNEEKPQDNLWLGIILALTCIVTVLVGYI 123
            +L   A +SF+    E     E+         ++ L  I   +VG  
Sbjct: 63  RILLLAACISFVLAWFE---EGEETITAFVEPFVILLILIANAIVGVW 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	99.83
d1wpga1	115	Calcium ATPase, transduction domain A {Rabbit (Ory	99.08

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.83  E-value=8.9e-21  Score=170.82  Aligned_cols=120  Identities=21%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             cccCCCHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCCCcccCcHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy6873          16 DEHLIPLEELYSILDTHPDRGLSELEVKRRLEKDGPNSLPQKYRINNVYILVGYIFRGFSALLWFGALLSFLAYLLEAET   95 (207)
Q Consensus        16 ~~~~~~~~~l~~~l~t~~~~GLs~~ev~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~~Ll~~a~~s~~~~~~~~~~   95 (207)
                      ++|..+++|+.++|+||+++|||.+|+++|+++||+|+++.++++++|+.++++|++|+.++|++++++|++++.+.   
T Consensus         3 ~~h~~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~---   79 (472)
T d1wpga4           3 AAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFE---   79 (472)
T ss_dssp             TGGGSCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSSCCCCCCCCHHHHHHHHTCSHHHHHHHHHHHHHHHHHHTS---
T ss_pred             ChhhCCHHHHHHHhCcCcccCcCHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHh---
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999987553   


Q ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCC
Q psy6873          96 NEEKPQDNLWLGIILALTCIVTVLVGYIFRGFSALL--WFGALLS  138 (207)
Q Consensus        96 ~~~~~~~~~~~~~ii~~v~~~~~~~~~~~~~~~~~~--~l~~~~~  138 (207)
                      ++......|.+++++.+++++++.++++||+++++.  +++++.+
T Consensus        80 ~~~~~~~~~~~~~~I~~vv~~n~~i~~~qe~~a~~~~~~l~~~~~  124 (472)
T d1wpga4          80 EGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEP  124 (472)
T ss_dssp             CTTSTTSSSHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHGGGSC
T ss_pred             cccccchhHhHhhhhhheeeeeeeEEeEEechHHHHHHHHhhhcc
Confidence            222233579999999999999999999999999988  6666543

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.08  E-value=2.9e-11  Score=88.95  Aligned_cols=42  Identities=14%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             eEEEEECCeE--EEeeCcchhhhhhheeeeeeeccEEEEeccCCCCcccceeeeeec
Q psy6873         140 LAYLLEAETN--EEKPQDNLWLGIILALTCIVTGSLLSVQQKYSPRTPWDLLNAGVR  194 (207)
Q Consensus       140 ~~~ViR~g~~--~~i~~~~L~~~~~~~~~~~V~GDiv~l~~~~Gd~iPaD~~l~~~~  194 (207)
                      .++|+|+|++  ++|++++|           ||||+|.+  ++||+|||||+|++++
T Consensus         2 ~~kV~R~g~~~v~~I~~~eL-----------v~GDiv~l--~~G~~vPaD~~ll~~~   45 (115)
T d1wpga1           2 MGKVYRADRKSVQRIKARDI-----------VPGDIVEV--AVGDKVPADIRILSIK   45 (115)
T ss_dssp             EEEEEBSSCSSCEEEEGGGC-----------CTTCEEEE--ETTCBCCSEEEEEEEC
T ss_pred             ceEEEECCCceEEEEeHHHC-----------CCCCEEEE--CCCCEEeeceEEEEee
Confidence            5899999974  78999999           99999999  9999999999998644