Psyllid ID: psy6932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQRDLSGGGGGGKKQGLVYLMGY
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEccccccccHHcccccccccccccccHHHHHHHHHHccccEEEEccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccEEcEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHcEEEcHHHHEccccccccccccccccEccccHHHHHHHHHHccccEEEEcccccccccccHHHccEEEEccEcccccEcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
matidtkkhtdverWVCIYPayinrkktlaegrripkakavdnptykdiddVLSTtglkyhienklypreiskehfvrgrarvqlknddgspvnpdfptREAVMLHLGALIpklksrqgkqanseqnqqrdlsggggggkkQGLVYLMGY
Flexible Loop (DISEMBL)
matidtkkhtdverwvciypayinrkktlaegrripkakavdnptykdiDDVLSTTGLKYhienklypreiskehfVRGRARvqlknddgspvnpDFPTREAVMLHLGALIPKLKsrqgkqanseqnqqrdlsggggggkkqGLVYLMGY
Low Complexity Region (SEG)
MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQRDLSggggggkkqgLVYLMGY
Disordered region (IsUnstruct)
*********TDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGR*********************AVMLHLGALI***************************************
Disordered Region (DISOPRED)
**************WVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGA***********************************VYLMGY
Disordered Region (DISEMBL)
********HTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLK***********************GKKQGLVYLMGY
Disordered Region (DISPRO)
*********TDVERWVCIYPAYINRKKT*AEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLK*************************KQGLVYL*GY
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQRDLSGGGGGGKKQGLVYLMGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
P49963	160	Signal recognition partic	yes	N/A	0.853	0.8	0.570	2e-38
Q5RBR1	144	Signal recognition partic	yes	N/A	0.866	0.902	0.496	3e-31
P09132	144	Signal recognition partic	yes	N/A	0.866	0.902	0.496	3e-31
Q3ZBG7	144	Signal recognition partic	yes	N/A	0.866	0.902	0.488	1e-30
Q9D7A6	144	Signal recognition partic	yes	N/A	0.833	0.868	0.492	1e-28
P49964	136	Signal recognition partic	yes	N/A	0.72	0.794	0.460	2e-21
O61749	160	Probable signal recogniti	yes	N/A	0.78	0.731	0.428	7e-21
Q943Z6	145	Signal recognition partic	yes	N/A	0.686	0.710	0.407	8e-17
Q554G7	178	Signal recognition partic	yes	N/A	0.693	0.584	0.318	8e-09
A9AAJ9	89	Signal recognition partic	yes	N/A	0.353	0.595	0.518	1e-07

>sp|P49963|SRP19_DROME Signal recognition particle 19 kDa protein OS=Drosophila melanogaster GN=Srp19 PE=2 SV=2

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 92/128 (71%)

Query: 8   KHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLY 67
           KH D+ERW+CIYPAYINRKKT  EGRR+PK   VDNP+Y +I DVLS + L++ +ENK Y
Sbjct: 16  KHNDMERWICIYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLMENKKY 75

Query: 68  PREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQN 127
            RE S E   RGR RVQL+N DG+  N DFPTRE++MLH+ + IP+LK+RQ K  +S   
Sbjct: 76  CRENSSEMEFRGRVRVQLRNVDGTLYNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQ 135

Query: 128 QQRDLSGG 135
           Q +  S  
Sbjct: 136 QSQPQSNA 143

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
Drosophila melanogaster (taxid: 7227)

>sp|Q5RBR1|SRP19_PONAB Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19 PE=2 SV=2

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 90/131 (68%), Gaps = 1/131 (0%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct: 1   MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60

Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
            +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct: 61  FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query: 120 KQANSEQNQQR 130
           K   ++Q+ Q+
Sbjct: 121 KTGGADQSLQQ 131

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Pongo abelii (taxid: 9601)

>sp|P09132|SRP19_HUMAN Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19 PE=1 SV=3

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 90/131 (68%), Gaps = 1/131 (0%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct: 1   MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60

Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
            +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct: 61  FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query: 120 KQANSEQNQQR 130
           K   ++Q+ Q+
Sbjct: 121 KTGGADQSLQQ 131

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Homo sapiens (taxid: 9606)

>sp|Q3ZBG7|SRP19_BOVIN Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19 PE=2 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 1/131 (0%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV +  GL  
Sbjct: 1   MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNV 60

Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
            +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct: 61  FLEKNKMYSREWNRDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query: 120 KQANSEQNQQR 130
           K    +Q+ Q+
Sbjct: 121 KTGGGDQSLQQ 131

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Bos taurus (taxid: 9913)

>sp|Q9D7A6|SRP19_MOUSE Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 86/126 (68%), Gaps = 1/126 (0%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           MA    +   D +R++ IYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct: 1   MACSAARPPADQDRFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNA 60

Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
            +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML++  +IPKLK+R  
Sbjct: 61  FLEKNKMYSREWNRDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQ 120

Query: 120 KQANSE 125
           K   ++
Sbjct: 121 KSGGAD 126

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Mus musculus (taxid: 10090)

>sp|P49964|SRP19_ORYSJ Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 5/113 (4%)

Query: 10  TDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYP 68
           + +++W  IYP Y+N KKT+AEGRRI   KA  +PT  +I D  S   + + IE +K YP
Sbjct: 8   SSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYP 67

Query: 69  REISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQ 121
           R+     F  GR RVQLK DDGSPVNP   T++ +M+ +  L+PK   R  KQ
Sbjct: 68  RDF----FQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQ 116

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O61749|SRP19_CAEEL Probable signal recognition particle 19 kDa protein OS=Caenorhabditis elegans GN=F37F2.2 PE=3 SV=3

 Score = 99.4 bits (246), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 79/119 (66%), Gaps = 2/119 (1%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           M ++ ++  +  +RW+ IYPAYI++KKT  +GR+I +  AV+NPT  +I DVL+  G   
Sbjct: 1   MTSVASEPLSSQKRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNP 60

Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQ 118
            +E  K YPR+  ++  V+GR RVQLKNDDG+  + +  TR+ +   +  +IPKLK+RQ
Sbjct: 61  LLERTKCYPRDGERDFEVQGRVRVQLKNDDGTAKH-EQKTRDEIFKMVAEMIPKLKTRQ 118

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Caenorhabditis elegans (taxid: 6239)

>sp|Q943Z6|SRP19_ARATH Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana GN=SRP19 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 5/108 (4%)

Query: 11  DVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPR 69
           ++++WV IYP YIN KKT+AEGRRI  +K+ +NP   +I D      L   +E +K YPR
Sbjct: 7   NIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEIDKAYPR 66

Query: 70  EISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR 117
           +  +     GR RVQLK +DG+ +NP   +R+ +M  +  L+P+   R
Sbjct: 67  DFMQV----GRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPER 110

Signal-recognition-particle assembly, binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q554G7|SRP19_DICDI Signal recognition particle 19 kDa protein homolog OS=Dictyostelium discoideum GN=srp19 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 6/110 (5%)

Query: 4   IDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE 63
           +D       ++W  +YP +IN + T  +GR++ K   V NPT  +I +  +  GL   IE
Sbjct: 9   VDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQLGLPCIIE 68

Query: 64  -NKLYPREISKEHFVRGRARVQLKNDDGS-PVNPDFPTREAVMLHLGALI 111
            +K YP    KE F+RGR R+    D  + P NP  P +  +++ +   I
Sbjct: 69  TSKGYP----KEFFLRGRLRINFFCDGTTMPRNPHIPNKTVLLVKIAERI 114

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Dictyostelium discoideum (taxid: 44689)

>sp|A9AAJ9|SRP19_METM6 Signal recognition particle 19 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp19 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 37/54 (68%), Gaps = 1/54 (1%)

Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPRE 70
          I+P YI+ K+T  EGR++ K  AV +P  KDI D ++  GL+Y IEN K YPRE
Sbjct: 6  IWPTYIDSKRTKNEGRKVSKEFAVQSPKLKDIADKINKMGLEYSIENKKSYPRE 59

Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.

Methanococcus maripaludis (strain C6 / ATCC BAA-1332) (taxid: 444158)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
114051175	148	signal recognition particle 19 kDa prote	0.893	0.905	0.607	2e-41
442762437	150	Putative signal recognition particle sub	0.853	0.853	0.620	8e-41
149689198	148	signal recognition particle [Triatoma in	0.76	0.770	0.684	8e-41
427786499	152	Putative signal recognition particle pro	0.853	0.842	0.589	1e-39
91077040	152	PREDICTED: similar to signal recognition	0.76	0.75	0.675	1e-39
357616155	148	signal recognition particle 19 kDa prote	0.893	0.905	0.592	2e-39
156549036	147	PREDICTED: signal recognition particle 1	0.8	0.816	0.641	3e-39
383862491	163	PREDICTED: signal recognition particle 1	0.86	0.791	0.573	8e-39
380024212	159	PREDICTED: signal recognition particle 1	0.826	0.779	0.596	8e-39
346469265	152	hypothetical protein [Amblyomma maculatu	0.84	0.828	0.590	1e-38

>gi|114051175|ref|NP_001040389.1| signal recognition particle 19 kDa protein [Bombyx mori] gi|95102718|gb|ABF51300.1| signal recognition particle 19 kDa protein [Bombyx mori]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 104/135 (77%), Gaps = 1/135 (0%)

Query: 7   KKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL 66
           KKH+DVERW+CIYPAY+N KKTLAEGRR+PK+  V+NPT+++I DVL  TGL+  +ENKL
Sbjct: 12  KKHSDVERWICIYPAYLNSKKTLAEGRRLPKSVCVENPTHQEIRDVLLATGLRVGVENKL 71

Query: 67  YPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQ 126
           Y RE SKE   RGR RVQ+KNDDG+PVNP+FPTRE+VM ++G  IPKLK+RQ +    +Q
Sbjct: 72  YSRECSKEMLYRGRIRVQIKNDDGAPVNPEFPTRESVMKYIGESIPKLKTRQNRPV-EQQ 130

Query: 127 NQQRDLSGGGGGGKK 141
            Q  + +     GKK
Sbjct: 131 PQPTNQAISKAKGKK 145

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442762437|gb|JAA73377.1| Putative signal recognition particle subunit srp19, partial [Ixodes ricinus]

 Score =  171 bits (434), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 80/129 (62%), Positives = 102/129 (79%), Gaps = 1/129 (0%)

Query: 2   ATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYH 61
           A + +K+H+D ERWVC+ PAYIN KKTLAEGRR+P++K V+NPTY++I DVL  TG K  
Sbjct: 2   AYLASKQHSDRERWVCLCPAYINSKKTLAEGRRLPRSKCVENPTYQEIRDVLDATGFKVG 61

Query: 62  IENKLYPREISKEHFV-RGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120
           +ENKLYPRE +K+  + RGR RVQLKNDD +PVNP +PTR+AVMLH+  +IP+LKSR  +
Sbjct: 62  VENKLYPREQNKDSLLYRGRIRVQLKNDDETPVNPQYPTRKAVMLHVCDMIPRLKSRTQR 121

Query: 121 QANSEQNQQ 129
           QA  EQ  Q
Sbjct: 122 QAGGEQASQ 130

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149689198|gb|ABR27967.1| signal recognition particle [Triatoma infestans]

 Score =  171 bits (433), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/114 (68%), Positives = 95/114 (83%)

Query: 7   KKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL 66
           K+++D ERW+CIYPAYIN KKTLAEGRR+PK KA++NPTY++I DVLS  G+K  +ENK+
Sbjct: 8   KQYSDRERWICIYPAYINSKKTLAEGRRVPKDKAIENPTYQEIRDVLSAAGMKVGVENKM 67

Query: 67  YPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120
           Y RE SKE    GR RVQLKNDDG+P+N DFPTR +VMLHL  +IPKLK+RQGK
Sbjct: 68  YSRERSKELLYIGRIRVQLKNDDGTPLNSDFPTRNSVMLHLCTMIPKLKTRQGK 121

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786499|gb|JAA58701.1| Putative signal recognition particle protein 19 [Rhipicephalus pulchellus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 76/129 (58%), Positives = 101/129 (78%), Gaps = 1/129 (0%)

Query: 2   ATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYH 61
           A + +K+H+D ERWVCIYPAYIN KKTLAEGRR+PK++ V+NPTY++I DVL  TG K  
Sbjct: 4   AYLASKQHSDRERWVCIYPAYINSKKTLAEGRRLPKSQCVENPTYQEIRDVLDATGFKVG 63

Query: 62  IENKLYPREISKEHFV-RGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120
           +ENKLYPRE +K+  + RGR RVQLKNDD +P NP +PTR+A+M H+  +IP+LK+R  +
Sbjct: 64  VENKLYPREQNKDSLLYRGRIRVQLKNDDSTPCNPQYPTRKALMHHICDMIPRLKTRTQR 123

Query: 121 QANSEQNQQ 129
           Q  ++Q  Q
Sbjct: 124 QGGADQQAQ 132

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077040|ref|XP_967879.1| PREDICTED: similar to signal recognition particle [Tribolium castaneum] gi|270001745|gb|EEZ98192.1| hypothetical protein TcasGA2_TC000621 [Tribolium castaneum]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 92/114 (80%)

Query: 7   KKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL 66
           KKH+D ERW+CIYPAYIN KKT+A+GRRI K K V+NPT++++ DVLS  GL+  +ENKL
Sbjct: 16  KKHSDRERWICIYPAYINSKKTVAQGRRIAKEKCVENPTHQEMRDVLSAAGLQVGVENKL 75

Query: 67  YPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120
           Y RE SKE   RGR R+QLK DDG+PVN DFPTRE+VMLHL  +IPKLK RQ K
Sbjct: 76  YSRERSKELLYRGRIRIQLKKDDGTPVNKDFPTRESVMLHLCEMIPKLKIRQNK 129

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616155|gb|EHJ70039.1| signal recognition particle 19 kDa protein [Danaus plexippus]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 102/135 (75%), Gaps = 1/135 (0%)

Query: 7   KKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKL 66
           KKHTD++RW+CIYPAY+N KKTLAEGR++P+   V+NPT+++I DVL TTGL+  +ENKL
Sbjct: 12  KKHTDLQRWICIYPAYLNSKKTLAEGRKLPRDICVENPTHQEIRDVLFTTGLRIGVENKL 71

Query: 67  YPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQ 126
           YPRE SKE   RGR RV+LKNDDG+P+  ++PTREAVM H+   IPKLK+RQ + A  +Q
Sbjct: 72  YPRERSKEMLYRGRIRVELKNDDGTPIKDEYPTREAVMRHIVESIPKLKTRQNRPA-EQQ 130

Query: 127 NQQRDLSGGGGGGKK 141
            Q    S     GKK
Sbjct: 131 PQAVQQSSNKSKGKK 145

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549036|ref|XP_001607942.1| PREDICTED: signal recognition particle 19 kDa protein-like isoform 1 [Nasonia vitripennis]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/120 (64%), Positives = 96/120 (80%)

Query: 6   TKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENK 65
           TK H+D ERW+CIYPAYIN KK+LAEGR++ K K V+NPT+++I DVL + GL   +ENK
Sbjct: 8   TKNHSDRERWICIYPAYINSKKSLAEGRKLTKEKCVENPTHQEIRDVLLSVGLNVGVENK 67

Query: 66  LYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSE 125
           L+PRE SKE   RGR RVQLKN+DG+P NPDFP+R++++  LG  IPKLKSRQGKQA  E
Sbjct: 68  LHPRERSKELLYRGRIRVQLKNNDGTPFNPDFPSRDSLLSFLGTNIPKLKSRQGKQAAGE 127

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862491|ref|XP_003706717.1| PREDICTED: signal recognition particle 19 kDa protein-like [Megachile rotundata]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 98/129 (75%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           +A   +KKH+D ERW+CIYP Y+N K+TLA GR++ K K V+NPT+++I DVL   G   
Sbjct: 20  LAWNSSKKHSDRERWICIYPVYLNSKRTLAGGRKLAKDKCVENPTHQEIRDVLVAAGFNV 79

Query: 61  HIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120
            +ENKL+PRE SKE   RGR RVQLKNDDG+PV P+FP+R++V+ ++G  IPKLK+RQGK
Sbjct: 80  GVENKLHPRERSKELLYRGRIRVQLKNDDGTPVKPEFPSRDSVLAYIGTTIPKLKTRQGK 139

Query: 121 QANSEQNQQ 129
           Q   EQ+ Q
Sbjct: 140 QTTGEQSAQ 148

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024212|ref|XP_003695899.1| PREDICTED: signal recognition particle 19 kDa protein-like [Apis florea]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 97/124 (78%)

Query: 6   TKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENK 65
           +KKH+D ERW+CIYP Y+N K+TLAEGR++ K K V+NPT+++I DVL   G    +ENK
Sbjct: 21  SKKHSDRERWICIYPVYLNSKRTLAEGRKLAKDKCVENPTHQEIRDVLVAAGFNVGVENK 80

Query: 66  LYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSE 125
           L+PRE SKE   RGR RVQLKNDDG+PV P+FPTR++V+ ++G  IPKLK+RQGK ++ E
Sbjct: 81  LHPRERSKELLYRGRIRVQLKNDDGTPVKPEFPTRDSVLAYVGTTIPKLKTRQGKHSSGE 140

Query: 126 QNQQ 129
           Q  Q
Sbjct: 141 QFSQ 144

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346469265|gb|AEO34477.1| hypothetical protein [Amblyomma maculatum]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/127 (59%), Positives = 99/127 (77%), Gaps = 1/127 (0%)

Query: 4   IDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE 63
           + +K+++D ERW+CIYPAYIN KKTLAEGRR+PK+K V+NPTY++I DVL  TG K  +E
Sbjct: 6   LASKQNSDRERWICIYPAYINSKKTLAEGRRLPKSKCVENPTYQEIRDVLDATGFKVGVE 65

Query: 64  NKLYPREISKEHFV-RGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQA 122
           NKLYPRE +K+  + RGR RVQLKNDD +P NP +PTR A+M H+  +IP+LK+R  +Q 
Sbjct: 66  NKLYPREQNKDSLLYRGRIRVQLKNDDDTPCNPQYPTRNALMHHVCEMIPRLKTRTQRQG 125

Query: 123 NSEQNQQ 129
            +EQ  Q
Sbjct: 126 GAEQPAQ 132

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
FB|FBgn0015298	160	Srp19 "Signal recognition part	0.84	0.787	0.579	1.9e-35
ZFIN|ZDB-GENE-040426-2657	141	srp19 "signal recognition part	0.86	0.914	0.530	3e-30
UNIPROTKB|P09132	144	SRP19 "Signal recognition part	0.866	0.902	0.496	2.7e-29
UNIPROTKB|F1RLG4	144	SRP19 "Uncharacterized protein	0.866	0.902	0.496	3.4e-29
UNIPROTKB|Q3ZBG7	144	SRP19 "Signal recognition part	0.866	0.902	0.488	7.1e-29
UNIPROTKB|J9PAS6	144	SRP19 "Uncharacterized protein	0.866	0.902	0.488	9.1e-29
RGD|1308437	144	Srp19 "signal recognition part	0.866	0.902	0.488	1.5e-28
MGI|MGI:1913634	144	Srp19 "signal recognition part	0.833	0.868	0.492	4.5e-27
UNIPROTKB|F1NQ53	145	SRP19 "Uncharacterized protein	0.746	0.772	0.521	1.5e-26
WB|WBGene00018159	160	F37F2.2 [Caenorhabditis elegan	0.78	0.731	0.428	2.4e-21

FB|FBgn0015298 Srp19 "Signal recognition particle protein 19" [Drosophila melanogaster (taxid:7227)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 73/126 (57%), Positives = 92/126 (73%)

Query:     8 KHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLY 67
             KH D+ERW+CIYPAYINRKKT  EGRR+PK   VDNP+Y +I DVLS + L++ +ENK Y
Sbjct:    16 KHNDMERWICIYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLMENKKY 75

Query:    68 PREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQN 127
              RE S E   RGR RVQL+N DG+  N DFPTRE++MLH+ + IP+LK+RQ K  +S   
Sbjct:    76 CRENSSEMEFRGRVRVQLRNVDGTLYNNDFPTRESIMLHIASKIPQLKTRQNKSGDSYHQ 135

Query:   128 QQRDLS 133
             Q +  S
Sbjct:   136 QSQPQS 141

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS;NAS

ZFIN|ZDB-GENE-040426-2657 srp19 "signal recognition particle 19" [Danio rerio (taxid:7955)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/130 (53%), Positives = 87/130 (66%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA + T    D ER++CIYPAYIN KKTLAEGRRIP  KAV+NPT  +I  VLS  GL  
Sbjct:     1 MAYLTTNP-ADKERFLCIYPAYINSKKTLAEGRRIPTDKAVENPTCAEIQGVLSAAGLNV 59

Query:    61 HIENKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK 120
             H+EN +YPRE +++   RGR RVQLK +DGS     F +R+ VM ++  +IPKLKSR  K
Sbjct:    60 HVENSMYPREWNRDVQFRGRVRVQLKMEDGSFCQDKFTSRKDVMFYVAEMIPKLKSRTQK 119

Query:   121 QANSEQNQQR 130
                +E   Q+
Sbjct:   120 SGGAEAGAQQ 129

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

UNIPROTKB|P09132 SRP19 "Signal recognition particle 19 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 65/131 (49%), Positives = 90/131 (68%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct:     1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60

Query:    61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
              +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct:    61 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query:   120 KQANSEQNQQR 130
             K   ++Q+ Q+
Sbjct:   121 KTGGADQSLQQ 131

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0008312 "7S RNA binding" evidence=IDA

GO:0006613 "cotranslational protein targeting to membrane" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1RLG4 SRP19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 65/131 (49%), Positives = 89/131 (67%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct:     1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60

Query:    61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
              +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct:    61 FLEKNKMYSREWNRDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query:   120 KQANSEQNQQR 130
             K    +Q+ Q+
Sbjct:   121 KTGGGDQSLQQ 131

GO:0042493 "response to drug" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|Q3ZBG7 SRP19 "Signal recognition particle 19 kDa protein" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 64/131 (48%), Positives = 89/131 (67%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV +  GL  
Sbjct:     1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNV 60

Query:    61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
              +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct:    61 FLEKNKMYSREWNRDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query:   120 KQANSEQNQQR 130
             K    +Q+ Q+
Sbjct:   121 KTGGGDQSLQQ 131

GO:0042493 "response to drug" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

UNIPROTKB|J9PAS6 SRP19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 64/131 (48%), Positives = 89/131 (67%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA    +   + +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct:     1 MACAAARSPAEQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60

Query:    61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
              +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct:    61 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query:   120 KQANSEQNQQR 130
             K    +Q+ Q+
Sbjct:   121 KTGGGDQSLQQ 131

GO:0048500 "signal recognition particle" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

RGD|1308437 Srp19 "signal recognition particle 19" [Rattus norvegicus (taxid:10116)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 64/131 (48%), Positives = 89/131 (67%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA    +   D +R++CIYPAY+N KKT+AEGRRIP  KAV+NPT  +I DV S  GL  
Sbjct:     1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPINKAVENPTATEIQDVCSAVGLNA 60

Query:    61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
              +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML++  +IPKLK+R  
Sbjct:    61 FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQ 120

Query:   120 KQANSEQNQQR 130
             K   ++ + Q+
Sbjct:   121 KSGGADPSLQQ 131

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEA;ISO

MGI|MGI:1913634 Srp19 "signal recognition particle 19" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 62/126 (49%), Positives = 86/126 (68%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             MA    +   D +R++ IYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct:     1 MACSAARPPADQDRFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNA 60

Query:    61 HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
              +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML++  +IPKLK+R  
Sbjct:    61 FLEKNKMYSREWNRDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQ 120

Query:   120 KQANSE 125
             K   ++
Sbjct:   121 KSGGAD 126

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

GO:0048500 "signal recognition particle" evidence=IEA

UNIPROTKB|F1NQ53 SRP19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 60/115 (52%), Positives = 80/115 (69%)

Query:    17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEH 75
             C+  AY+N KKT+AEGRRIP  KAV+NPT  +I DV +  G    +E NK+YPRE +++ 
Sbjct:    20 CV--AYLNNKKTIAEGRRIPIDKAVENPTSTEIQDVCAAVGFNVLLEKNKMYPREWNRDV 77

Query:    76 FVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQR 130
               RGR R+QLK DDG+P  P FPTR++VML+    IPKLK+R  K   S+Q+ Q+
Sbjct:    78 QYRGRVRIQLKQDDGNPCLPQFPTRKSVMLYAAETIPKLKTRTQKMGGSDQSLQQ 132

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

WB|WBGene00018159 F37F2.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 51/119 (42%), Positives = 78/119 (65%)

Query:     1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
             M ++ ++  +  +RW+ IYPAYI++KKT  +GR+I +  AV+NPT  +I DVL+  G   
Sbjct:     1 MTSVASEPLSSQKRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNP 60

Query:    61 HIEN-KLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQ 118
              +E  K YPR+  ++  V+GR RVQLKNDDG+  +    TR+ +   +  +IPKLK+RQ
Sbjct:    61 LLERTKCYPRDGERDFEVQGRVRVQLKNDDGTAKHEQ-KTRDEIFKMVAEMIPKLKTRQ 118

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0048500 "signal recognition particle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09132	SRP19_HUMAN	No assigned EC number	0.4961	0.8666	0.9027	yes	N/A
Q943Z6	SRP19_ARATH	No assigned EC number	0.4074	0.6866	0.7103	yes	N/A
Q3ZBG7	SRP19_BOVIN	No assigned EC number	0.4885	0.8666	0.9027	yes	N/A
A4FX62	SRP19_METM5	No assigned EC number	0.5185	0.3533	0.5955	yes	N/A
O61749	SRP19_CAEEL	No assigned EC number	0.4285	0.78	0.7312	yes	N/A
A9AAJ9	SRP19_METM6	No assigned EC number	0.5185	0.3533	0.5955	yes	N/A
Q5RBR1	SRP19_PONAB	No assigned EC number	0.4961	0.8666	0.9027	yes	N/A
Q9D7A6	SRP19_MOUSE	No assigned EC number	0.4920	0.8333	0.8680	yes	N/A
P49963	SRP19_DROME	No assigned EC number	0.5703	0.8533	0.8	yes	N/A
P49964	SRP19_ORYSJ	No assigned EC number	0.4601	0.72	0.7941	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam01922	92	pfam01922, SRP19, SRP19 protein	8e-32
COG1400	93	COG1400, SEC65, Signal recognition particle 19 kDa	1e-13
PRK00754	95	PRK00754, PRK00754, signal recognition particle pr	5e-08
PRK03745	100	PRK03745, PRK03745, signal recognition particle pr	0.001

>gnl|CDD|216787 pfam01922, SRP19, SRP19 protein

 Score =  108 bits (272), Expect = 8e-32
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 10/101 (9%)

Query: 16  VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
           + IYPAY++ K++ +EGRR+PK  AV+NPT ++I D     GL   +E  K YPR+    
Sbjct: 1   IVIYPAYLDSKRSRSEGRRVPKELAVENPTAEEIADACRKLGLPVVVEPEKKYPRD---W 57

Query: 75  HFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLK 115
              RGR RVQLK+DD         T+++++  +   I +L+
Sbjct: 58  WENRGRVRVQLKDDD------KIGTKKSLLKKIAEKIKELR 92

The signal recognition particle (SRP) binds to the signal peptide of proteins as they are being translated. The binding of the SRP halts translation and the complex is then transported to the endoplasmic reticulum's cytoplasmic surface. The SRP then aids translocation of the protein through the ER membrane. The SRP is a ribonucleoprotein that is composed of a small RNA and several proteins. One of these proteins is the SRP19 protein (Sec65 in yeast). Length = 92

>gnl|CDD|224318 COG1400, SEC65, Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY-HIENKLYPRE 70
           ++PAY +   + +EGRR+PK  AV+NP+ ++I + L   GLK     +K YPR 
Sbjct: 5  VLWPAYFDSDLSRSEGRRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPRL 59

Length = 93

>gnl|CDD|179110 PRK00754, PRK00754, signal recognition particle protein Srp19; Provisional

 Score = 47.8 bits (114), Expect = 5e-08
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPR 69
          I+PAYI+  ++ +EGR I +  AV  P  ++I +     GL   +E  K YPR
Sbjct: 9  IWPAYIDSTRSRSEGRIISRKLAVKEPRLEEIIEAAEKLGLNPEVEPDKAYPR 61

Length = 95

>gnl|CDD|235155 PRK03745, PRK03745, signal recognition particle protein Srp19; Provisional

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 8/74 (10%)

Query: 15 WVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY--HIENKLYPR--E 70
          W     + ++RK     GR +PK  AV+ PT ++I D     G K       KL PR   
Sbjct: 7  WPSELDSRLSRKY----GRIVPKNLAVERPTLEEIVDAAEALGFKVIEVDREKLNPRLSG 62

Query: 71 ISKEHFVRGRARVQ 84
          I +E   RGR  ++
Sbjct: 63 IDEELRTRGRIVIE 76

Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
KOG3198|consensus	152		100.0
PF01922	95	SRP19: SRP19 protein; InterPro: IPR002778 The sign	100.0
PRK00754	95	signal recognition particle protein Srp19; Provisi	100.0
PRK03745	100	signal recognition particle protein Srp19; Provisi	100.0
COG1400	93	SEC65 Signal recognition particle 19 kDa protein [	99.96

>KOG3198|consensus

Probab=100.00  E-value=4.5e-45  Score=283.74  Aligned_cols=138  Identities=45%  Similarity=0.733  Sum_probs=126.7

Q ss_pred             CCccCCCCCCCccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcc
Q psy6932           1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRG   79 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~G   79 (150)
                      |+.+..+++.+.++|+||||+|||+++|++||||||+++||+||+..||++||+.|||+|.+|. |+|||||    .++|
T Consensus         1 m~~~~~~~~~~~~r~ivlYP~Y~d~krt~~EGRripke~aVeNP~a~eI~Dvl~~lgl~~~~E~~K~hPrD~----~n~G   76 (152)
T KOG3198|consen    1 MAFIASKDLEDQKRWIVLYPAYIDKKRTRKEGRRIPKEKAVENPLAKEIADVLRALGLNCLLEPNKKHPRDF----VNPG   76 (152)
T ss_pred             CcccccCChhhccceEEEEEEEeccccchhhccccCHHHhhcCcchhHHHHHHHHhCCcccccccccCchhc----CCCc
Confidence            6788899999999999999999999999999999999999999999999999999999999995 9999988    6899


Q ss_pred             eEEEEeecCCCCCCCCCCCCHHHHHHHHHHHchhhhhc-cCCCCCccccccc----------cCCCCCCCCccc
Q psy6932          80 RARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR-QGKQANSEQNQQR----------DLSGGGGGGKKQ  142 (150)
Q Consensus        80 RVrV~l~~~~G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR-~~~~~~~~~~~~~----------~~~~~~~~~~~~  142 (150)
                      ||||+|+++||++++.+|++++.+|..+|++|+++.+| .+.++++..+..+          +.++++|||+|+
T Consensus        77 RVRvqlk~edG~l~~~~~~sr~~~~~~~a~~ip~~~~R~~~~~~~a~~~~~q~~~~~t~~~~~~~~kkgkgkk~  150 (152)
T KOG3198|consen   77 RVRVQLKNEDGTLYVIAFISRKSLMLPIAEMIPELKTRQPQKTGEAVHQYPQGVLGATISPLGSPGKKGKGKKK  150 (152)
T ss_pred             eEEEEeeccCCcEEeecchhHHHHHHHhhhhCcccccccccccCCccccccccccccccccccccccccCCccc
Confidence            99999999999999999999999999999999999999 5566666655555          666777877776

>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=100.00  E-value=8.7e-40  Score=237.86  Aligned_cols=94  Identities=45%  Similarity=0.778  Sum_probs=85.3

Q ss_pred             EEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEe-cCCCCccccccCCCcceEEEEeecCCCCCCC
Q psy6932          16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVN   94 (150)
Q Consensus        16 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE-~K~yPR~w~~d~~~~GRVrV~l~~~~G~~~~   94 (150)
                      +||||+|||+++|+++|||||+++||++|+++||++||++|||++++| +|+|||+||   +++|||+|+++++   ++|
T Consensus         1 ~vIyP~Y~Ds~~sr~~GRrv~k~~aV~~P~~~EI~~a~~~Lgl~~~~E~~K~yPr~~~---~~~GRV~V~~~~~---~~~   74 (95)
T PF01922_consen    1 IVIYPAYFDSKKSRSEGRRVPKELAVENPTLEEIADACKKLGLPCVVEPDKRYPRDWW---ENPGRVRVQLKND---PVN   74 (95)
T ss_dssp             EEEEGGGGBTTSSTTTT--SSTTTSBSS--HHHHHHHHHHTTSEEEEETTECTTCGST---SCTTEEEEE-CST---BSS
T ss_pred             CEEccchhcCCCChhhccccChhhcCCCCCHHHHHHHHHHcCCCEEEccccCcChhhc---ccCceEEEEeCCC---ccc
Confidence            699999999999999999999999999999999999999999999999 599999975   6999999999876   999


Q ss_pred             CCCCCHHHHHHHHHHHchhhh
Q psy6932          95 PDFPTREAVMLHLGALIPKLK  115 (150)
Q Consensus        95 ~~~~~K~~Ll~~Ia~~I~~lr  115 (150)
                      ++|++|++||++||+.|+++|
T Consensus        75 ~~~~~K~~Ll~~Ia~~i~~~r   95 (95)
T PF01922_consen   75 PEIKSKKELLKKIAEKIKKIR   95 (95)
T ss_dssp             TTSSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999886

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....

>PRK00754 signal recognition particle protein Srp19; Provisional

Probab=100.00  E-value=1.5e-36  Score=221.57  Aligned_cols=91  Identities=30%  Similarity=0.470  Sum_probs=84.0

Q ss_pred             ccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEEEeecCCC
Q psy6932          12 VERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARVQLKNDDG   90 (150)
Q Consensus        12 ~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV~l~~~~G   90 (150)
                      ...++||||+|||+++|+++|||||+++||+||+++||++||++|||+|++|+ |.|||+||   +++|||+|+.     
T Consensus         3 ~~~r~vIyP~Y~d~~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~e~~K~yPr~~~---e~~GRv~V~~-----   74 (95)
T PRK00754          3 DKGRIVIWPAYIDSTRSRSEGRIISRKLAVKEPRLEEIIEAAEKLGLNPEVEPDKAYPRSWW---EVSGRVLVDK-----   74 (95)
T ss_pred             CcCcEEEeeccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEeeCCCCCchHh---cCCCEEEECC-----
Confidence            35579999999999999999999999999999999999999999999999995 99999996   4999999953     


Q ss_pred             CCCCCCCCCHHHHHHHHHHHchhhhh
Q psy6932          91 SPVNPDFPTREAVMLHLGALIPKLKS  116 (150)
Q Consensus        91 ~~~~~~~~~K~~Ll~~Ia~~I~~lrs  116 (150)
                            +.+|.+||++||+.|+++|.
T Consensus        75 ------~~~K~~ll~~Ia~~I~~~R~   94 (95)
T PRK00754         75 ------VGSKTNTLRMIAKEIKKLRG   94 (95)
T ss_pred             ------CCCHHHHHHHHHHHHHHHhc
Confidence                  36899999999999999875

>PRK03745 signal recognition particle protein Srp19; Provisional

Probab=100.00  E-value=7.6e-34  Score=209.12  Aligned_cols=93  Identities=25%  Similarity=0.410  Sum_probs=83.6

Q ss_pred             ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCce-eEec-CCCCccccc--cCCCcceEEEEeecCC
Q psy6932          14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY-HIEN-KLYPREISK--EHFVRGRARVQLKNDD   89 (150)
Q Consensus        14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~-~iE~-K~yPR~w~~--d~~~~GRVrV~l~~~~   89 (150)
                      .++||||+|||+++|++||||||+++||+||+++||++||++|||+| ++|. |.|||+|..  +|...|||+|+..   
T Consensus         2 ~~~vIyP~Y~D~~~sr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~~E~~K~yPr~~g~~~~~~~~Grv~V~~~---   78 (100)
T PRK03745          2 GRFVVWPSELDSRLSRKYGRIVPKNLAVERPTLEEIVDAAEALGFKVIEVDREKLNPRLSGIDEELRTRGRIVIESP---   78 (100)
T ss_pred             CcEEEeeccccCcCChhhcCccCHHHcccCCCHHHHHHHHHHcCCCcEeeccCCCCCCccCCccchhcCCEEEecCC---
Confidence            47999999999999999999999999999999999999999999999 5995 999999422  2468999999643   


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHchhhhhc
Q psy6932          90 GSPVNPDFPTREAVMLHLGALIPKLKSR  117 (150)
Q Consensus        90 G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR  117 (150)
                              .+|..||++||+.|+++|.+
T Consensus        79 --------~~K~~ll~~Ia~~ik~~R~~   98 (100)
T PRK03745         79 --------YGKSKSLKMIAQKIREFRKR   98 (100)
T ss_pred             --------CCHHHHHHHHHHHHHHHHhc
Confidence                    37999999999999999875

>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]

Probab=99.96  E-value=2.8e-29  Score=182.78  Aligned_cols=89  Identities=30%  Similarity=0.572  Sum_probs=81.1

Q ss_pred             ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEe-cCCCCccccccCCCcceEEEEeecCCCCC
Q psy6932          14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEHFVRGRARVQLKNDDGSP   92 (150)
Q Consensus        14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE-~K~yPR~w~~d~~~~GRVrV~l~~~~G~~   92 (150)
                      ..+||||+|||+++||++|||||+++||+||+++||++|+++|||+|.++ +|.|||.||+   ..|||.|+..      
T Consensus         2 ~~~vlwp~YfDs~~srs~GRrvpk~laV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr~~w~---~~g~vive~~------   72 (93)
T COG1400           2 MRIVLWPAYFDSDLSRSEGRRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPRLWWE---ISGRVIVESN------   72 (93)
T ss_pred             CceEEeehhhcCccChhhccccchhhcccCCCHHHHHHHHHHcCCCeeechhhcCCCchhh---hCceEEEecC------
Confidence            46899999999999999999999999999999999999999999999765 5999999975   6699999754      


Q ss_pred             CCCCCCCHHHHHHHHHHHchhhhh
Q psy6932          93 VNPDFPTREAVMLHLGALIPKLKS  116 (150)
Q Consensus        93 ~~~~~~~K~~Ll~~Ia~~I~~lrs  116 (150)
                           .+|.++|+.||+.|+.++.
T Consensus        73 -----~~K~~~lk~ia~~lr~~r~   91 (93)
T COG1400          73 -----GKKSKLLKAIAAKLREKRE   91 (93)
T ss_pred             -----ccHhHHHHHHHHHHHHhhc
Confidence                 3699999999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
1jid_A	128	Human Srp19 In Complex With Helix 6 Of Human Srp Rn		8e-31
1mfq_B	108	Crystal Structure Analysis Of A Ternary S-Domain Co		2e-29
1l9a_A	87	Crystal Structure Of Srp19 In Complex With The S Do		2e-07
1lng_A	87	Crystal Structure Of The Srp19-7s.S Srp Rna Complex		6e-07
1kvn_A	104	Solution Structure Of Protein Srp19 Of The Arhaeogl		2e-04

>pdb|1JID|A Chain A, Human Srp19 In Complex With Helix 6 Of Human Srp Rna Length = 128

Iteration: 1
 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 1/118 (0%)
Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct: 1   MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60
Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR 117
            +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R
Sbjct: 61  FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR 118

>pdb|1MFQ|B Chain B, Crystal Structure Analysis Of A Ternary S-Domain Complex Of Human Signal Recognition Particle Length = 108

Iteration: 1
 Score =  124 bits (311), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 78/105 (74%), Gaps = 1/105 (0%)
Query: 14  RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREIS 72
           R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL   +E NK+Y RE +
Sbjct: 2   RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 61
Query: 73  KEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR 117
           ++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R
Sbjct: 62  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR 106

>pdb|1L9A|A Chain A, Crystal Structure Of Srp19 In Complex With The S Domain Of Signal Recognition Particle Rna Length = 87

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYPREISKE 74
          + I+P+YI++KK+  EGR++P+  A++ P+ KDI+  L   GL+  I  +K YPR    +
Sbjct: 1  MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPR----Q 56
Query: 75 HF-VRGRARVQLKND 88
          H+ + GR  V  K +
Sbjct: 57 HWEIAGRVEVDYKGN 71

>pdb|1LNG|A Chain A, Crystal Structure Of The Srp19-7s.S Srp Rna Complex Of M. Jannaschii Length = 87

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 18 IYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI-ENKLYPRE 70
          I+P+YI++KK+  EGR++P+  A++ P+ KDI+  L   GL+  I  +K YPR+
Sbjct: 3  IWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQ 56

>pdb|1KVN|A Chain A, Solution Structure Of Protein Srp19 Of The Arhaeoglobus Fulgidus Signal Recognition Particle, 10 Structures Length = 104

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%)
Query: 17 CIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPR 69
           ++   ++ KK+ AEGRRIP+  AV N    ++ +     GLK+  E K YP+
Sbjct: 5  VVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPK 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1jid_A	128	Signal recognition particle 19 kDa protein; signal	2e-45
3dlu_A	106	SRP19, signal recognition particle 19 kDa protein;	1e-26
1kvn_A	104	SRP19; RNA binding protein; NMR {Archaeoglobus ful	1e-25
1lng_A	87	SRP19, signal recognition particle 19 kDa protein;	2e-24
3ktw_A	109	SRP19, signal recognition particle 19 kDa protein;	2e-06

>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B Length = 128

 Score =  143 bits (363), Expect = 2e-45
 Identities = 62/128 (48%), Positives = 86/128 (67%), Gaps = 1/128 (0%)

Query: 1   MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY 60
           MA    +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL  
Sbjct: 1   MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNV 60

Query: 61  HIE-NKLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQG 119
            +E NK+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R  
Sbjct: 61  FLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQ 120

Query: 120 KQANSEQN 127
            + +   +
Sbjct: 121 LEHHHHHH 128

>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B Length = 106

 Score = 95.7 bits (238), Expect = 1e-26
 Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 16  VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHI--ENKLYPREISK 73
             ++P+ ++ + +   GR +P++ AV++P  ++I         K     E+KL PR    
Sbjct: 4   FVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPRLSGI 63

Query: 74  EHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQ 121
           +  +R    + L++  G         +   +  +   I + + R    
Sbjct: 64  DEELRTFGMIVLESPYG---------KSKSLKLIAQKIREFRRRSAGT 102

>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A Length = 104

 Score = 92.9 bits (231), Expect = 1e-25
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 14  RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISK 73
           +   ++   ++ KK+ AEGRRIP+  AV N    ++ +     GLK+  E K YP+    
Sbjct: 2   KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKS--- 58

Query: 74  EHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQR 130
                GR  V+ +            T+  +M+ L   I +++ ++ +Q   ++ +++
Sbjct: 59  WWEEGGRVVVEKRG-----------TKTKLMIELARKIAEIREQKREQKKDKKKKKK 104

>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A* Length = 87

 Score = 89.0 bits (221), Expect = 2e-24
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
          + I+P+YI++KK+  EGR++P+  A++ P+ KDI+  L   GL+  I  +K YPR+    
Sbjct: 1  MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQ---H 57

Query: 75 HFVRGRARVQLKNDDGSPVN 94
            + G   V  K +    + 
Sbjct: 58 WEICGCVEVDYKGNKLQLLK 77

>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus} Length = 109

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 8/73 (10%)

Query: 13 ERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREI 71
          E  + I+P+Y     T ++GRR+ +         +++   L   GL   +  NK YPR  
Sbjct: 16 ENRIVIWPSYFF-SPTRSKGRRLARI--PYKIKTEELVSTLRELGLDPIVIENKKYPR-- 70

Query: 72 SKEHFVRGRARVQ 84
            +  +     V+
Sbjct: 71 --DRKINFLIAVK 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
1jid_A	128	Signal recognition particle 19 kDa protein; signal	100.0
1kvn_A	104	SRP19; RNA binding protein; NMR {Archaeoglobus ful	100.0
3dlu_A	106	SRP19, signal recognition particle 19 kDa protein;	100.0
1lng_A	87	SRP19, signal recognition particle 19 kDa protein;	100.0
3ktw_A	109	SRP19, signal recognition particle 19 kDa protein;	100.0

>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B

Probab=100.00  E-value=2e-48  Score=296.19  Aligned_cols=120  Identities=52%  Similarity=0.845  Sum_probs=111.1

Q ss_pred             CCccCCCCCCCccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEe-cCCCCccccccCCCcc
Q psy6932           1 MATIDTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKEHFVRG   79 (150)
Q Consensus         1 ~~~~~~~~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE-~K~yPR~w~~d~~~~G   79 (150)
                      ||-++.+.++|.++|+||||+|||+++|++||||||+++||+||+++||++||++|||++++| +|.|||+|++||+++|
T Consensus         1 ~~~~~~~~~~d~~r~~vIyP~Y~Ds~~tr~eGRRV~k~~aVenPt~~EI~~a~~~Lgl~~~vE~~K~yPr~w~~~~~~~G   80 (128)
T 1jid_A            1 MACAAARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRG   80 (128)
T ss_dssp             ----CCCSTTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETTCCCTTCCCCCGGGCC
T ss_pred             CCccCCCCCcCccceEEECcccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCCccchhhcCCCC
Confidence            567788899999999999999999999999999999999999999999999999999999999 5999999999999999


Q ss_pred             eEEEEeecCCCCCCCCCCCCHHHHHHHHHHHchhhhhccCC
Q psy6932          80 RARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGK  120 (150)
Q Consensus        80 RVrV~l~~~~G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR~~~  120 (150)
                      ||+|+++++||+|+||+|++|++||.+||++|+++|+|+.+
T Consensus        81 RVrV~lk~~dG~~~n~~~~sK~~Ll~~IA~~I~~lr~r~~~  121 (128)
T 1jid_A           81 RVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQL  121 (128)
T ss_dssp             EEEECCBCTTSCBSCTTCSSHHHHHHHHHHHGGGCTTC---
T ss_pred             EEEEEEeCCCCCccCCcCCCHHHHHHHHHHHHHHhhccCCc
Confidence            99999999999999999999999999999999999999765

>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A

Probab=100.00  E-value=2.9e-40  Score=243.40  Aligned_cols=92  Identities=28%  Similarity=0.469  Sum_probs=87.3

Q ss_pred             ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEecCCCCccccccCCCcceEEEEeecCCCCCC
Q psy6932          14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPV   93 (150)
Q Consensus        14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~K~yPR~w~~d~~~~GRVrV~l~~~~G~~~   93 (150)
                      +|+||||+|||+++|++||||||+++||+||+++||++||++|||++++|+|.|||+||   .++|||+|++.       
T Consensus         2 ~~~vIyP~Y~Ds~~tr~eGRRv~k~~aV~nP~~~EI~~a~~~Lgl~~~vE~K~yPr~w~---~~~GRVrV~~~-------   71 (104)
T 1kvn_A            2 KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWW---EEGGRVVVEKR-------   71 (104)
T ss_dssp             CCEEEETTTTCSSSCTTTTCCSCGGGCCSSCCHHHHHHHHHHHTSSEEECCCTTTCSSC---SSCCEEEESCC-------
T ss_pred             CeEEEeeccccCCCChhhCCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCchhh---cCCCEEEEEeC-------
Confidence            59999999999999999999999999999999999999999999999999999999995   48999999874       


Q ss_pred             CCCCCCHHHHHHHHHHHchhhhhccC
Q psy6932          94 NPDFPTREAVMLHLGALIPKLKSRQG  119 (150)
Q Consensus        94 ~~~~~~K~~Ll~~Ia~~I~~lrsR~~  119 (150)
                          ++|.+||..||+.|+++++|+.
T Consensus        72 ----~~K~~ll~~Ia~~I~~~r~r~~   93 (104)
T 1kvn_A           72 ----GTKTKLMIELARKIAEIREQKR   93 (104)
T ss_dssp             ----SCSHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHhhcccc
Confidence                4799999999999999999984

>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B

Probab=100.00  E-value=6.8e-37  Score=226.20  Aligned_cols=95  Identities=18%  Similarity=0.278  Sum_probs=86.3

Q ss_pred             ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCce-eEec-CCCCcc-----ccccCCCcceEEEEee
Q psy6932          14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKY-HIEN-KLYPRE-----ISKEHFVRGRARVQLK   86 (150)
Q Consensus        14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~-~iE~-K~yPR~-----w~~d~~~~GRVrV~l~   86 (150)
                      ..+||||+|||+++|++||||||+++||+||+++||++||++|||++ ++|+ |.|||+     ||   .++|||+|++.
T Consensus         2 ~~ivIyP~Y~Ds~~sr~eGRRV~k~~aV~nPt~~EI~~a~~~lgl~~~~vE~~K~yPr~~~~~~~~---~~~GRVrV~~~   78 (106)
T 3dlu_A            2 GRFVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPRLSGIDEEL---RTFGMIVLESP   78 (106)
T ss_dssp             CEEEECGGGGBTTSCGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEEEEEEEEEECC-------CC---EEEEEEEEECS
T ss_pred             CcEEEeeccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCceEecCCCCCCCcccccccc---cCCcEEEEecC
Confidence            47899999999999999999999999999999999999999999999 9994 999999     65   38999999873


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHchhhhhccCCCC
Q psy6932          87 NDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQA  122 (150)
Q Consensus        87 ~~~G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR~~~~~  122 (150)
                                 .+|.+||++||+.|+++|+|+..+-
T Consensus        79 -----------~~K~~ll~~Ia~~I~~lr~r~~~~~  103 (106)
T 3dlu_A           79 -----------YGKSKSLKLIAQKIREFRRRSAGTL  103 (106)
T ss_dssp             -----------SCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             -----------CCHHHHHHHHHHHHHHHhCCCCCCC
Confidence                       5899999999999999999987764

>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*

Probab=100.00  E-value=2.4e-36  Score=216.24  Aligned_cols=85  Identities=32%  Similarity=0.598  Sum_probs=78.5

Q ss_pred             EEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEEEeecCCCCCCC
Q psy6932          16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARVQLKNDDGSPVN   94 (150)
Q Consensus        16 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV~l~~~~G~~~~   94 (150)
                      +||||+|||+++|++||||||+++||+||+++||++||++|||++++|+ |+|||+||.   .+|||+|++.+       
T Consensus         1 ivIyP~Y~ds~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~yPr~w~~---~~GRVrV~~~~-------   70 (87)
T 1lng_A            1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWE---ICGCVEVDYKG-------   70 (87)
T ss_dssp             CEECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTTS---CCCEEECCCCS-------
T ss_pred             CEEecccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEccCCCCCccccc---CCceEEEEeCC-------
Confidence            5899999999999999999999999999999999999999999999995 999999962   45999999853       


Q ss_pred             CCCCCHHHHHHHHHHHchhh
Q psy6932          95 PDFPTREAVMLHLGALIPKL  114 (150)
Q Consensus        95 ~~~~~K~~Ll~~Ia~~I~~l  114 (150)
                          +|.+||++||+.|+++
T Consensus        71 ----~K~~ll~~Ia~~i~~~   86 (87)
T 1lng_A           71 ----NKLQLLKEICKIIKGK   86 (87)
T ss_dssp             ----CHHHHHHHHHHHHTTC
T ss_pred             ----CHHHHHHHHHHHHHhc
Confidence                5999999999999764

>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.2e-34  Score=215.21  Aligned_cols=91  Identities=18%  Similarity=0.269  Sum_probs=80.3

Q ss_pred             ccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEEEeecCCC
Q psy6932          12 VERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARVQLKNDDG   90 (150)
Q Consensus        12 ~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV~l~~~~G   90 (150)
                      ...++||||+|||+ +|+++|||||++  |+||+++||++||++|||++++|+ |.|||+||    ++|||+|++.    
T Consensus        15 ~~~~ivIyP~Y~Ds-~sr~eGRRVpk~--V~nP~~~EI~~a~~~Lgl~~~vE~~K~yPrdw~----~~GRVrV~~~----   83 (109)
T 3ktw_A           15 EENRIVIWPSYFFS-PTRSKGRRLARI--PYKIKTEELVSTLRELGLDPIVIENKKYPRDRK----INFLIAVKKV----   83 (109)
T ss_dssp             GGTEEEECTHHHHC-SSGGGTCCSSCC--SSCCCHHHHHHHHHHTTCCCEEECSCCCSSCTT----CCCEEEEECS----
T ss_pred             hCCeEEEeecccCC-cchhcCCccccc--CCCCCHHHHHHHHHHcCCCeEEccCCCCCcccC----CCCEEEEecC----
Confidence            45799999999999 999999999999  999999999999999999999995 99999994    9999999873    


Q ss_pred             CCCCCCCCCHHHHHHHHHHHchhhhhccCC
Q psy6932          91 SPVNPDFPTREAVMLHLGALIPKLKSRQGK  120 (150)
Q Consensus        91 ~~~~~~~~~K~~Ll~~Ia~~I~~lrsR~~~  120 (150)
                             .+|.+||+.||+.|+++|.++..
T Consensus        84 -------~sK~~Llk~IA~~I~~~R~~~~~  106 (109)
T 3ktw_A           84 -------KSKNYTLKIIHNALMGTRQTNPN  106 (109)
T ss_dssp             -------SSHHHHHHHHHHHHCCC------
T ss_pred             -------CCHHHHHHHHHHHHHHhhccCCC
Confidence                   48999999999999999866543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1jida_	114	d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId:	7e-47
d1kvva_	104	d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgi	1e-26
d1lnga_	87	d.201.1.1 (A:) SRP19 {Archaeon Methanococcus janna	2e-22

>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  146 bits (369), Expect = 7e-47
 Identities = 60/113 (53%), Positives = 81/113 (71%), Gaps = 1/113 (0%)

Query: 6   TKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-N 64
            +   D +R++CIYPAY+N KKT+AEGRRIP +KAV+NPT  +I DV S  GL   +E N
Sbjct: 2   ARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKN 61

Query: 65  KLYPREISKEHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR 117
           K+Y RE +++   RGR RVQLK +DGS     FP+R++VML+   +IPKLK+R
Sbjct: 62  KMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR 114

>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 104

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 94.0 bits (234), Expect = 1e-26
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 14/117 (11%)

Query: 14  RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISK 73
           +   ++   ++ KK+ AEGRRIP+  AV N    ++ +     GLK+  E K YP+   +
Sbjct: 2   KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWWE 61

Query: 74  EHFVRGRARVQLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSRQGKQANSEQNQQR 130
           E    GR  V+              T+  +M+ L   I +++ ++ +Q   ++ +++
Sbjct: 62  E---GGRVVVE-----------KRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104

>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 83.2 bits (206), Expect = 2e-22
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%)

Query: 16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIE-NKLYPREISKE 74
          + I+P+YI++KK+  EGR++P+  A++ P+ KDI+  L   GL+  I  +K YPR+  + 
Sbjct: 1  MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEI 60

Query: 75 HFVRGRARVQLKN 87
              G   V  K 
Sbjct: 61 ---CGCVEVDYKG 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1jida_	114	SRP19 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kvva_	104	SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 223	100.0
d1lnga_	87	SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2	100.0

>d1jida_ d.201.1.1 (A:) SRP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-48  Score=286.27  Aligned_cols=113  Identities=52%  Similarity=0.882  Sum_probs=110.0

Q ss_pred             CCCCCCCccceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEE
Q psy6932           5 DTKKHTDVERWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARV   83 (150)
Q Consensus         5 ~~~~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV   83 (150)
                      ++++|+|.++|+||||+|||+++|++||||||++.||+||+++||++||++|||++++|+ |.|||+|++||+++|||+|
T Consensus         1 a~~~~sd~~rw~iIyP~Y~Ds~~tr~eGRRv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~~Pr~~~~~~~~~GRVrV   80 (114)
T d1jida_           1 AARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRV   80 (114)
T ss_dssp             CCCSTTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETTCCCTTCCCCCGGGCCEEEE
T ss_pred             CCCCccCcccCEEECCccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCEEEecCCCCCcccccccccCceEEE
Confidence            367899999999999999999999999999999999999999999999999999999996 9999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCHHHHHHHHHHHchhhhhc
Q psy6932          84 QLKNDDGSPVNPDFPTREAVMLHLGALIPKLKSR  117 (150)
Q Consensus        84 ~l~~~~G~~~~~~~~~K~~Ll~~Ia~~I~~lrsR  117 (150)
                      +++|+||+++|++|++|++||.+||++|++|++|
T Consensus        81 ~lk~~~g~~~~~~~~tK~~Ll~~Ia~~I~klk~R  114 (114)
T d1jida_          81 QLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR  114 (114)
T ss_dssp             CCBCTTSCBSCTTCSSHHHHHHHHHHHGGGCTTC
T ss_pred             EEeCCCCCccCCCCCCHHHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999987

>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2e-37  Score=226.34  Aligned_cols=96  Identities=28%  Similarity=0.465  Sum_probs=88.4

Q ss_pred             ceEEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEecCCCCccccccCCCcceEEEEeecCCCCCC
Q psy6932          14 RWVCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIENKLYPREISKEHFVRGRARVQLKNDDGSPV   93 (150)
Q Consensus        14 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~K~yPR~w~~d~~~~GRVrV~l~~~~G~~~   93 (150)
                      +++||||+|||+++|+++|||||++.||+||+++||++||+.|||++++|+|+|||+||   ..+|||+|+..       
T Consensus         2 k~~vIyP~Y~Ds~~sr~eGRRv~k~~aV~~P~~~eI~~a~~~lgl~~~~e~K~yPr~~~---~~~Grv~V~~~-------   71 (104)
T d1kvva_           2 KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAEEKKYPKSWW---EEGGRVVVEKR-------   71 (104)
T ss_dssp             CCEEEETTTTCTTSCTTTCCCSCTTTCCSSCCHHHHHHHHHHHTSSEEEECCSCCSCSS---CCCCEEEESCC-------
T ss_pred             CcEEEechhhcCCCChhhcCccCHHHhcCCCCHHHHHHHHHHcCCCceecCCCCCcchh---hCCCEEEEcCC-------
Confidence            47999999999999999999999999999999999999999999999999999999996   47999999643       


Q ss_pred             CCCCCCHHHHHHHHHHHchhhhhccCCCCC
Q psy6932          94 NPDFPTREAVMLHLGALIPKLKSRQGKQAN  123 (150)
Q Consensus        94 ~~~~~~K~~Ll~~Ia~~I~~lrsR~~~~~~  123 (150)
                          ++|.+||..||+.|+++|+++.....
T Consensus        72 ----~~K~~ll~~Ia~~i~~~r~~~~~~~~   97 (104)
T d1kvva_          72 ----GTKTKLMIELARKIAEIREQKREQKK   97 (104)
T ss_dssp             ----SCSHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             ----CCHHHHHHHHHHHHHHHHhccccccc
Confidence                58999999999999999999865433

>d1lnga_ d.201.1.1 (A:) SRP19 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: SRP19
superfamily: SRP19
family: SRP19
domain: SRP19
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.7e-36  Score=212.56  Aligned_cols=84  Identities=32%  Similarity=0.593  Sum_probs=78.9

Q ss_pred             EEEeeccccCCcCccccccccccccCCCCCHHHHHHHHHHcCCceeEec-CCCCccccccCCCcceEEEEeecCCCCCCC
Q psy6932          16 VCIYPAYINRKKTLAEGRRIPKAKAVDNPTYKDIDDVLSTTGLKYHIEN-KLYPREISKEHFVRGRARVQLKNDDGSPVN   94 (150)
Q Consensus        16 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~iE~-K~yPR~w~~d~~~~GRVrV~l~~~~G~~~~   94 (150)
                      +||||+|||+++|+++|||||++.||+||+++||++||++|||++++|+ |+|||+||   .++|||+|++++       
T Consensus         1 ivIyP~Y~Ds~~sr~eGRRv~k~~aV~~P~~~eI~~a~~~lgl~~~~e~~K~yPr~~~---~~~Grv~V~~~~-------   70 (87)
T d1lnga_           1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHW---EICGCVEVDYKG-------   70 (87)
T ss_dssp             CEECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTT---SCCCEEECCCCS-------
T ss_pred             CEEcchhhcCCCChhhcCccCHHHHccCCCHHHHHHHHHHcCCCeEEeeCCCCCchHh---hCCCEEEEEecC-------
Confidence            6899999999999999999999999999999999999999999999995 99999986   489999999873       


Q ss_pred             CCCCCHHHHHHHHHHHchh
Q psy6932          95 PDFPTREAVMLHLGALIPK  113 (150)
Q Consensus        95 ~~~~~K~~Ll~~Ia~~I~~  113 (150)
                          +|.+||++||+.|+.
T Consensus        71 ----~K~~llk~Ia~~ik~   85 (87)
T d1lnga_          71 ----NKLQLLKEICKIIKG   85 (87)
T ss_dssp             ----CHHHHHHHHHHHHTT
T ss_pred             ----CHHHHHHHHHHHHhc
Confidence                799999999999864