Psyllid ID: psy6952

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSKILPDSPTTPTSPTQVVVLAIHNKGHVILGLKSIWLIGL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEccccccccccccEEcccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccHHHHHHcccccHHHHHHHHHHcccHHccccccccccccccccccccccccccccccEEEEEEccccEEEEEcHHHHHHcc
Coil and Loop (DISEMBL)
mkidfasldqrniysnnELAFRTAErhlgipalldaedmveyavPDRLSILTYLSQFYQVFVNqkqgksparcnmfvnstlrpathYQVHLIRSAGQLNLSSLLISMIAegsawsaytvrnigssspnskilpdspttptspTQVVVLAIHNKGHVILGLKSIWLIGL
Flexible Loop (DISEMBL)
mkidfasldqrnIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSKILPDSPTTPTSPTQVVVLAIHNKGHVILGLKSIWLIGL
Low Complexity Region (SEG)
MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSKILpdspttptsptQVVVLAIHNKGHVILGLKSIWLIGL
Disordered region (IsUnstruct)
**********RNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNI*********************QVVVLAIHNKGHVILGLKSIWLI**
Disordered Region (DISOPRED)
MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ*************************************************************************************************ILGLKSIWLIGL
Disordered Region (DISEMBL)
MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSKILPDSPTTPTSPTQVVVLAIHNKGHVILGLKSIWLIGL
Disordered Region (DISPRO)
*KIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ**********************YQVHLIRSAGQLNLSSLLISMIAEGSAWSAY*****************SPTTPTSPTQVVVLAIHNKGHVILGLKSIWLIGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSKILPDSPTTPTSPTQVVVLAIHNKGHVILGLKSIWLIGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q8IY33	904	MICAL-like protein 2 OS=H	yes	N/A	0.380	0.070	0.661	1e-18
Q8N3F8	863	MICAL-like protein 1 OS=H	no	N/A	0.416	0.081	0.563	5e-15
Q8BGT6	870	MICAL-like protein 1 OS=M	no	N/A	0.410	0.079	0.519	8e-15
F1QH17	1994	Protein-methionine sulfox	no	N/A	0.482	0.040	0.395	8e-12
G3MWR8	1960	Protein-methionine sulfox	no	N/A	0.565	0.048	0.347	8e-12
Q8CJ19	1993	Protein-methionine sulfox	no	N/A	0.565	0.047	0.347	2e-11
Q7RTP6	2002	Protein-methionine sulfox	no	N/A	0.565	0.047	0.347	2e-11
P35609	894	Alpha-actinin-2 OS=Homo s	no	N/A	0.410	0.077	0.420	4e-10
Q9JI91	894	Alpha-actinin-2 OS=Mus mu	no	N/A	0.410	0.077	0.420	4e-10
Q3ZC55	894	Alpha-actinin-2 OS=Bos ta	no	N/A	0.410	0.077	0.420	4e-10

>sp|Q8IY33|MILK2_HUMAN MICAL-like protein 2 OS=Homo sapiens GN=MICALL2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 53/68 (77%), Gaps = 4/68 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           I+F++L + NIY NN+LAFR AE HLGIPALLDAEDMV   VPDRLSILTY+SQ+Y  F 
Sbjct: 48  INFSALKKENIYENNKLAFRVAEEHLGIPALLDAEDMVALKVPDRLSILTYVSQYYNYF- 106

Query: 63  NQKQGKSP 70
               G+SP
Sbjct: 107 ---HGRSP 111

May be a cytoskeletal regulator.
Homo sapiens (taxid: 9606)

>sp|Q8N3F8|MILK1_HUMAN MICAL-like protein 1 OS=Homo sapiens GN=MICALL1 PE=1 SV=2

 Score = 80.1 bits (196), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 1/71 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           +DF SL + N++ NN LAF  AE+ LGIPALLD  DMV  +VPD LSI+TY+SQ+Y  F 
Sbjct: 49  LDFDSLSKDNVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFC 108

Query: 63  NQKQ-GKSPAR 72
           +  Q G SP R
Sbjct: 109 SPGQAGVSPPR 119

May be a cytoskeletal regulator.

Homo sapiens (taxid: 9606)

>sp|Q8BGT6|MILK1_MOUSE MICAL-like protein 1 OS=Mus musculus GN=Micall1 PE=1 SV=3

 Score = 79.7 bits (195), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 8/77 (10%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           +DF SL + N++ NN LAF  AE+ LGIPALLD  DMV  +VPD LSI+TY+SQ+Y  F 
Sbjct: 49  LDFQSLSKENVFENNRLAFEVAEKELGIPALLDPNDMVSMSVPDCLSIMTYVSQYYNHFT 108

Query: 63  NQKQ--------GKSPA 71
           +  Q        GK PA
Sbjct: 109 SSGQAAASPPKPGKDPA 125

May be a cytoskeletal regulator.

Mus musculus (taxid: 10090)

>sp|F1QH17|MCA3A_DANRE Protein-methionine sulfoxide oxidase mical3a OS=Danio rerio GN=mical3a PE=2 SV=2

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 5/86 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD++++  NN+LAF  AER  GI  ++  ++M     PD+LS++ YLSQFY++F 
Sbjct: 568 IDFESLDEKDVEKNNQLAFDVAEREFGISPIMTGKEMSVVVEPDKLSMVMYLSQFYEMFK 627

Query: 63  N-----QKQGKSPARCNMFVNSTLRP 83
           +     + Q  SP      + ST  P
Sbjct: 628 DTVPPGENQNLSPEEKAALIASTKSP 653

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|G3MWR8|MICA3_BOVIN Protein-methionine sulfoxide oxidase MICAL3 OS=Bos taurus GN=MICAL3 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 54/95 (56%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD++N+  NN+LAF  AE+ LGI  ++   +M     PD+LS++ YL+QFY++F 
Sbjct: 565 IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGREMASVGEPDKLSMVMYLTQFYEMFK 624

Query: 63  NQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQ 97
           +    +  +  N    + L  +T   +  +   GQ
Sbjct: 625 DSLPSRDASDLNAEERAVLIASTKSPISFLSKLGQ 659

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q8CJ19|MICA3_MOUSE Protein-methionine sulfoxide oxidase MICAL3 OS=Mus musculus GN=Mical3 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD++N+  NN+LAF  AE+ LGI  ++  ++M     PD+LS++ YL+QFY++F 
Sbjct: 565 IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 624

Query: 63  NQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQ 97
           +          N    + L  +T   +  +   GQ
Sbjct: 625 DSLSSSDTLDLNAEEKAVLIASTKSPISFLSKLGQ 659

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization. Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|Q7RTP6|MICA3_HUMAN Protein-methionine sulfoxide oxidase MICAL3 OS=Homo sapiens GN=MICAL3 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/95 (34%), Positives = 53/95 (55%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD++N+  NN+LAF  AE+ LGI  ++  ++M     PD+LS++ YL+QFY++F 
Sbjct: 565 IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 624

Query: 63  NQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQ 97
           +          N    + L  +T   +  +   GQ
Sbjct: 625 DSLPSSDTLDLNAEEKAVLIASTRSPISFLSKLGQ 659

Monooxygenase that promotes depolymerization of F-actin by mediating oxidation of specific methionine residues on actin. Acts by modifying actin subunits through the addition of oxygen to form methionine-sulfoxide, leading to promote actin filament severing and prevent repolymerization (By similarity). Involved in exocytic vesicles tethering and fusion: the monooxygenase activity is required for this process.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 3

EC: .

EC: -

>sp|P35609|ACTN2_HUMAN Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID++ L++ +   N  LA   AE+HL IP +LDAED+V    PD  +I+TY+S FY  F 
Sbjct: 198 IDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFA 257

Query: 63  NQKQGKSPA 71
             +Q ++ A
Sbjct: 258 GAEQAETAA 266

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Homo sapiens (taxid: 9606)

>sp|Q9JI91|ACTN2_MOUSE Alpha-actinin-2 OS=Mus musculus GN=Actn2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID++ L++ +   N  LA   AE+HL IP +LDAED+V    PD  +I+TY+S FY  F 
Sbjct: 198 IDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFA 257

Query: 63  NQKQGKSPA 71
             +Q ++ A
Sbjct: 258 GAEQAETAA 266

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Mus musculus (taxid: 10090)

>sp|Q3ZC55|ACTN2_BOVIN Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID++ L++ +   N  LA   AE+HL IP +LDAED+V    PD  +I+TY+S FY  F 
Sbjct: 198 IDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCFYHAFA 257

Query: 63  NQKQGKSPA 71
             +Q ++ A
Sbjct: 258 GAEQAETAA 266

F-actin cross-linking protein which is thought to anchor actin to a variety of intracellular structures. This is a bundling protein.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
242003022	122	conserved hypothetical protein [Pediculu	0.363	0.5	0.852	9e-23
189240639	987	PREDICTED: similar to MICAL-like CG11259	0.458	0.078	0.686	2e-22
340718062	1099	PREDICTED: hypothetical protein LOC10064	0.392	0.060	0.757	8e-22
350420891	1096	PREDICTED: hypothetical protein LOC10074	0.392	0.060	0.757	8e-22
345482132	850	PREDICTED: hypothetical protein LOC10011	0.392	0.077	0.728	7e-21
380023178	1087	PREDICTED: uncharacterized protein LOC10	0.392	0.060	0.714	1e-20
328790600	1062	PREDICTED: LOW QUALITY PROTEIN: hypothet	0.392	0.062	0.714	1e-20
383858085	1084	PREDICTED: uncharacterized protein LOC10	0.428	0.066	0.679	2e-20
332027292	1029	MICAL-like protein 2 [Acromyrmex echinat	0.392	0.064	0.714	2e-20
307180220	1088	MICAL-like protein 2 [Camponotus florida	0.392	0.060	0.7	7e-20

>gi|242003022|ref|XP_002422582.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505372|gb|EEB09844.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  111 bits (278), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 55/61 (90%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF  LD+R+IY NNELAFRTAER LGIPALLDAEDMVEY VPDRLSILTYLSQFYQ FV
Sbjct: 51  IDFDRLDKRDIYKNNELAFRTAERQLGIPALLDAEDMVEYEVPDRLSILTYLSQFYQAFV 110

Query: 63  N 63
           +
Sbjct: 111 S 111

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240639|ref|XP_001809361.1| PREDICTED: similar to MICAL-like CG11259-PA [Tribolium castaneum]

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/83 (68%), Positives = 66/83 (79%), Gaps = 6/83 (7%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           I+F+ L++ +IY NNELAFR AERHLGIPALL+ EDMVE +VPDRLSILTYLSQFYQ FV
Sbjct: 51  IEFSKLNKDDIYHNNELAFRIAERHLGIPALLEPEDMVECSVPDRLSILTYLSQFYQTFV 110

Query: 63  NQKQGKSPARCNMFVNSTLRPAT 85
              QGKSPAR      ++ RPAT
Sbjct: 111 -VGQGKSPARL-----ASKRPAT 127

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718062|ref|XP_003397491.1| PREDICTED: hypothetical protein LOC100649179 [Bombus terrestris]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/70 (75%), Positives = 56/70 (80%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD+ +IY NNELAFR AE+HLGIPALLDAEDM   AVPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFDSLDKNDIYGNNELAFRIAEQHLGIPALLDAEDMASCAVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPAR 72
               G SPAR
Sbjct: 110 ---NGSSPAR 116

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420891|ref|XP_003492663.1| PREDICTED: hypothetical protein LOC100744222 [Bombus impatiens]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 53/70 (75%), Positives = 56/70 (80%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD+ +IY NNELAFR AE+HLGIPALLDAEDM   AVPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFDSLDKNDIYGNNELAFRIAEQHLGIPALLDAEDMASCAVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPAR 72
               G SPAR
Sbjct: 110 ---SGSSPAR 116

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482132|ref|XP_001602531.2| PREDICTED: hypothetical protein LOC100118598 [Nasonia vitripennis]

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 58/70 (82%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SL++ +IY NNELAFRTAE+HLGIPALLDAEDM   +VPDRLSILTYLSQFYQVF 
Sbjct: 51  IDFGSLNKDDIYGNNELAFRTAEQHLGIPALLDAEDMASCSVPDRLSILTYLSQFYQVF- 109

Query: 63  NQKQGKSPAR 72
               G SP++
Sbjct: 110 ---GGSSPSK 116

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023178|ref|XP_003695403.1| PREDICTED: uncharacterized protein LOC100866046 [Apis florea]

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 55/70 (78%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF +LD+ ++Y NNELAFR AE+HLGIPALLDAEDM   AVPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFDNLDKNDVYGNNELAFRVAEQHLGIPALLDAEDMASCAVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPAR 72
               G SP R
Sbjct: 110 ---SGSSPTR 116

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790600|ref|XP_396410.4| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC412959 [Apis mellifera]

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 55/70 (78%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF +LD+ ++Y NNELAFR AE+HLGIPALLDAEDM   AVPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFDNLDKNDVYGNNELAFRVAEQHLGIPALLDAEDMASCAVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPAR 72
               G SP R
Sbjct: 110 ---SGSSPTR 116

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858085|ref|XP_003704533.1| PREDICTED: uncharacterized protein LOC100881207 [Megachile rotundata]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 53/78 (67%), Positives = 60/78 (76%), Gaps = 6/78 (7%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD+ N+Y NNELAF+ AE+HLGIPALLDAEDM   +VPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFNSLDKDNVYENNELAFKIAEQHLGIPALLDAEDMASCSVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPARCNMFVNST 80
               G SP+R  + VN T
Sbjct: 110 ---GGSSPSR--LAVNRT 122

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027292|gb|EGI67376.1| MICAL-like protein 2 [Acromyrmex echinatior]

 Score =  103 bits (257), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 56/70 (80%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SL++ ++Y NNELAFRTAE+HLGIPALLDAEDM    VPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFNSLNKDDVYRNNELAFRTAEQHLGIPALLDAEDMASCMVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPAR 72
               G SP+R
Sbjct: 110 ---GGSSPSR 116

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180220|gb|EFN68253.1| MICAL-like protein 2 [Camponotus floridanus]

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 55/70 (78%), Gaps = 4/70 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF  L++ ++Y NNELAFRTAE+HLGIPALLDAEDM    VPDRLSILTYLSQFYQ F 
Sbjct: 51  IDFNGLNKDDVYRNNELAFRTAEQHLGIPALLDAEDMASCTVPDRLSILTYLSQFYQTF- 109

Query: 63  NQKQGKSPAR 72
               G SP+R
Sbjct: 110 ---GGSSPSR 116

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
UNIPROTKB|Q8IY33	904	MICALL2 "MICAL-like protein 2"	0.380	0.070	0.661	4e-17
ZFIN|ZDB-GENE-110119-1	867	micall1 "MICAL-like 1" [Danio	0.482	0.093	0.534	4.8e-17
RGD|1307875	1003	Micall2 "MICAL-like 2" [Rattus	0.380	0.063	0.617	1e-16
ZFIN|ZDB-GENE-030131-5409	799	micall2a "mical-like 2a" [Dani	0.380	0.080	0.661	1.4e-16
FB|FBgn0036333	1010	MICAL-like "MICAL-like" [Droso	0.345	0.057	0.741	3.3e-16
ZFIN|ZDB-GENE-030131-5803	783	micall2b "mical-like 2b" [Dani	0.380	0.081	0.647	3.8e-16
UNIPROTKB|F1RIV6	981	MICALL2 "Uncharacterized prote	0.380	0.065	0.647	6.7e-16
UNIPROTKB|F1N8S6	397	Gga.5175 "Uncharacterized prot	0.404	0.171	0.588	1.4e-15
UNIPROTKB|E1BYZ3	839	E1BYZ3 "Uncharacterized protei	0.380	0.076	0.602	3.8e-15
UNIPROTKB|F1N8S7	879	Gga.5175 "Uncharacterized prot	0.404	0.077	0.588	6.7e-15

UNIPROTKB|Q8IY33 MICALL2 "MICAL-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 4.0e-17, P = 4.0e-17
 Identities = 45/68 (66%), Positives = 53/68 (77%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             I+F++L + NIY NN+LAFR AE HLGIPALLDAEDMV   VPDRLSILTY+SQ+Y  F 
Sbjct:    48 INFSALKKENIYENNKLAFRVAEEHLGIPALLDAEDMVALKVPDRLSILTYVSQYYNYF- 106

Query:    63 NQKQGKSP 70
                 G+SP
Sbjct:   107 ---HGRSP 111

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

ZFIN|ZDB-GENE-110119-1 micall1 "MICAL-like 1" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 4.8e-17, P = 4.8e-17
 Identities = 46/86 (53%), Positives = 57/86 (66%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             IDF SL + N++ NN LAF  AER LGIPALLDAEDMV  +VPDRLSI+TY+SQ+Y  F 
Sbjct:    48 IDFDSLSKENVFENNRLAFEVAERELGIPALLDAEDMVSMSVPDRLSIITYVSQYYNFFT 107

Query:    63 NQKQG-----KSPARCNMFVNSTLRP 83
             N+        KSP+      ++  RP
Sbjct:   108 NKSHTVSKCIKSPSSSGYIRSAIKRP 133

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1307875 Micall2 "MICAL-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 42/68 (61%), Positives = 51/68 (75%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             I+F +L + NIY NN+LAF+ AE  LGIPALLDAEDMV   +PDRLSILTY+SQ+Y  F 
Sbjct:    48 INFNALRKENIYENNKLAFQVAEEQLGIPALLDAEDMVALKIPDRLSILTYVSQYYNYF- 106

Query:    63 NQKQGKSP 70
                 G+SP
Sbjct:   107 ---HGRSP 111

GO:0005923 "tight junction" evidence=ISO

GO:0006897 "endocytosis" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032432 "actin filament bundle" evidence=ISO

ZFIN|ZDB-GENE-030131-5409 micall2a "mical-like 2a" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 45/68 (66%), Positives = 51/68 (75%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             I+F SL + N+Y NN LAFR AE HLGIPALLDAEDMV   VPDRLSILTY+SQ+Y  F 
Sbjct:    48 INFESLSKDNVYYNNHLAFRVAEDHLGIPALLDAEDMVALPVPDRLSILTYVSQYYNYF- 106

Query:    63 NQKQGKSP 70
                 G+SP
Sbjct:   107 ---HGRSP 111

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0036333 MICAL-like "MICAL-like" [Drosophila melanogaster (taxid:7227)]

 Score = 214 (80.4 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 43/58 (74%), Positives = 48/58 (82%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
             IDF  L   +IY NN+LAF TAE++LGIPALLDA DMV Y VPDRLSILTYLSQFY+V
Sbjct:    57 IDFDRLKADDIYENNDLAFTTAEKYLGIPALLDAADMVSYEVPDRLSILTYLSQFYKV 114

GO:0003779 "actin binding" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5803 micall2b "mical-like 2b" [Danio rerio (taxid:7955)]

 Score = 212 (79.7 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 44/68 (64%), Positives = 50/68 (73%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             IDF SL + NIY NN+ AF  AE+ LGIPALLDAEDMV   VPDRLSILTY+SQ+Y  F 
Sbjct:    48 IDFDSLSKENIYENNQRAFEVAEKELGIPALLDAEDMVALKVPDRLSILTYVSQYYNYF- 106

Query:    63 NQKQGKSP 70
                 G+SP
Sbjct:   107 ---HGRSP 111

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1RIV6 MICALL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 6.7e-16, P = 6.7e-16
 Identities = 44/68 (64%), Positives = 51/68 (75%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             I+F +L + NIY NN+LAFR AE  LGIPALLDAEDMV   VPDRLSILTY+SQ+Y  F 
Sbjct:    48 INFNALRKENIYENNQLAFRVAEEQLGIPALLDAEDMVALRVPDRLSILTYVSQYYNYF- 106

Query:    63 NQKQGKSP 70
                 G+SP
Sbjct:   107 ---HGRSP 111

GO:0032432 "actin filament bundle" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N8S6 Gga.5175 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
 Identities = 40/68 (58%), Positives = 47/68 (69%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             +DF SL + N+Y NN LAF  AER LGIPALLD  DMV   VPD LSI+TY+SQ+Y  F 
Sbjct:    49 LDFDSLSKDNVYENNRLAFELAERELGIPALLDPNDMVSMKVPDCLSIMTYVSQYYNHFN 108

Query:    63 NQKQGKSP 70
             N  Q + P
Sbjct:   109 NPDQARVP 116

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BYZ3 E1BYZ3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 41/68 (60%), Positives = 50/68 (73%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             I+F SL + N+Y NN+LAF+ A   LGIPALLDAEDMV   VPDRLSI+TY+SQ+Y  F 
Sbjct:    48 INFNSLSKENVYENNKLAFQVASEQLGIPALLDAEDMVALRVPDRLSIITYVSQYYNYF- 106

Query:    63 NQKQGKSP 70
                 G+SP
Sbjct:   107 ---HGRSP 111

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005923 "tight junction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032432 "actin filament bundle" evidence=IEA

UNIPROTKB|F1N8S7 Gga.5175 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 6.7e-15, P = 6.7e-15
 Identities = 40/68 (58%), Positives = 47/68 (69%)

Query:     3 IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             +DF SL + N+Y NN LAF  AER LGIPALLD  DMV   VPD LSI+TY+SQ+Y  F 
Sbjct:    46 LDFDSLSKDNVYENNRLAFELAERELGIPALLDPNDMVSMKVPDCLSIMTYVSQYYNHFN 105

Query:    63 NQKQGKSP 70
             N  Q + P
Sbjct:   106 NPDQARVP 113

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam00307	104	pfam00307, CH, Calponin homology (CH) domain	7e-10
COG5069	612	COG5069, SAC6, Ca2+-binding actin-bundling protein	8e-07
cd00014	107	cd00014, CH, Calponin homology domain; actin-bindi	6e-05

>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain

 Score = 53.1 bits (128), Expect = 7e-10
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 2   KIDFASLDQRNIYS--NNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ 59
            ID   +++       N  LA   AE+ LG+P +L+ ED+VE    +   +LT L+Q ++
Sbjct: 44  LIDLKKVNKNRFDKLENLNLALEFAEKKLGVPKVLEPEDLVE--DGNEKLVLTLLAQLFR 101

Query: 60  VF 61
            F
Sbjct: 102 RF 103

The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy. Length = 104

>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

 Score = 47.6 bits (113), Expect = 8e-07
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 16  NNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           NN  AF  A + +GI  L+  ED+V  ++PD  SI+TY+S +   F
Sbjct: 187 NNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRF 232

Length = 612

>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 16  NNELAFRTAERHLGIP-ALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           N  LA   AE  LG+P    DAED+VE    D   +L  L    + F
Sbjct: 63  NINLALNFAE-KLGVPVVNFDAEDLVED--GDEKLVLGLLWSLIRKF 106

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav). Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG0517|consensus	2473		99.92
KOG0035|consensus	890		99.75
COG5069	612	SAC6 Ca2+-binding actin-bundling protein fimbrin/p	99.04
PF00307	108	CH: Calponin homology (CH) domain; InterPro: IPR00	98.1
cd00014	107	CH Calponin homology domain; actin-binding domain	97.64
smart00033	103	CH Calponin homology domain. Actin binding domains	95.52

>KOG0517|consensus

Probab=99.92  E-value=1.6e-26  Score=229.81  Aligned_cols=111  Identities=30%  Similarity=0.396  Sum_probs=102.6

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch-hhhhcccc
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA-RCNMFVNS   79 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~-~~~~~~~~   79 (168)
                      |||||++|.|.++..|++.||++||++|||+++|||||+ ++..||||||||||+.|||||+++++..+.+ |+.+++++
T Consensus       211 DLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV-~v~~PDEKSIITYV~~YYHyFsKmK~~~v~gKRIgkVl~~  289 (2473)
T KOG0517|consen  211 DLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDV-NVEQPDEKSIITYVVTYYHYFSKMKQLAVEGKRIGKVLDQ  289 (2473)
T ss_pred             chhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhc-CccCCCcchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            799999999999999999999999999999999999999 8999999999999999999999999887765 79999888


Q ss_pred             ccCcchhhHHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952          80 TLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV  119 (168)
Q Consensus        80 ~~~~~~~~~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~  119 (168)
                      .++     .++++.  .||.++++||.||++|+.-|+.+.
T Consensus       290 lme-----~ekm~~--~YE~LasdLL~WI~~ti~~L~~R~  322 (2473)
T KOG0517|consen  290 LME-----TEKMIE--QYEGLASDLLEWIEQTIQTLESRK  322 (2473)
T ss_pred             HHH-----HHHHHH--HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            876     677776  688999999999999999888764

>KOG0035|consensus

Probab=99.75  E-value=4e-19  Score=170.56  Aligned_cols=121  Identities=35%  Similarity=0.569  Sum_probs=105.5

Q ss_pred             CCcC-CccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch--hhhhc-
Q psy6952           1 MKID-FASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA--RCNMF-   76 (168)
Q Consensus         1 ~LID-~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~--~~~~~-   76 (168)
                      +||| |+++.++++.+|++.||++||+++|||++||+||++....||+++||||++++||+|++.++.++.+  +|... 
T Consensus       186 dli~~y~~lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~~~~~fSg~~~~~t~~n~i~s~~a  265 (890)
T KOG0035|consen  186 DLIDQYDKLTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSSYYHAFSGAEAAETAANRICSVLA  265 (890)
T ss_pred             hhhhhhhhcCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhhccccccCcchhhhhcccccchhh
Confidence            5899 9999999999999999999999999999999999999999999999999999999999999888776  35444 


Q ss_pred             cccccCcchhhHHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhhcCCCCCCCCCc
Q psy6952          77 VNSTLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTVRNIGSSSPNSK  130 (168)
Q Consensus        77 ~~~~~~~~~~~~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~~~~~~~~~~~k  130 (168)
                      +++.       ++..|+  +|+++++.++.||++++||+...+..--...+.-|
T Consensus       266 v~qe-------~~~~~e--~~e~~~s~~l~~~~~~~P~l~~r~~~~~~~~~q~~  310 (890)
T KOG0035|consen  266 VNQE-------KETTME--EYETLASELLEWIARRTPWLQNRVTDSVGAKAQRK  310 (890)
T ss_pred             cccc-------ccchHH--HHHHHhhhhhhHHHhcCcccccccccchhhhhccc
Confidence            6665       566777  78899999999999999999988765555544444

>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]

Probab=99.04  E-value=6.3e-11  Score=108.69  Aligned_cols=76  Identities=32%  Similarity=0.417  Sum_probs=68.4

Q ss_pred             CCcCCccCC--CcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch-hhhhc
Q psy6952           1 MKIDFASLD--QRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA-RCNMF   76 (168)
Q Consensus         1 ~LID~dsL~--~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~-~~~~~   76 (168)
                      |+||++.|+  +.++..|+.+||++|++.+||++++++||++++..|||+|+||||+-+|+.|+-..+...+. |+..+
T Consensus       170 Dtld~n~ld~qkknk~~n~~qafe~a~k~Igi~rli~vedivnV~~pDERsimtyv~~y~~rf~~l~Kid~al~rv~rl  248 (612)
T COG5069         170 DTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSWYIIRFGLLEKIDIALHRVYRL  248 (612)
T ss_pred             cccCccccchhhcccchhHHHHHHHHHHhhchHhhcCcceeeecCCcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            578999999  88899999999999999999999999999999999999999999999999999888877655 44433

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []

Probab=98.10  E-value=1.3e-06  Score=62.70  Aligned_cols=58  Identities=41%  Similarity=0.690  Sum_probs=48.8

Q ss_pred             cCCccCCCc-----ChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhh
Q psy6952           3 IDFASLDQR-----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV   62 (168)
Q Consensus         3 ID~dsL~~~-----~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~   62 (168)
                      |++..+.+.     +..+|++.|++.+++++|+|..++++|+..  .+|++.|++|+.+++++|.
T Consensus        46 i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~dl~~--~~~~~~vl~~l~~l~~~~e  108 (108)
T PF00307_consen   46 IDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLLSPEDLVE--KGDEKSVLSFLWQLFRYFE  108 (108)
T ss_dssp             SSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS-HHHHHS--TT-HHHHHHHHHHHHHHHT
T ss_pred             chhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH--CcCHHHHHHHHHHHHHHHC
Confidence            566666443     689999999999998899999999999964  7999999999999999984

It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)

Probab=97.64  E-value=2.6e-05  Score=55.88  Aligned_cols=52  Identities=37%  Similarity=0.527  Sum_probs=45.7

Q ss_pred             CCCcChhhhHHHHHHHHHHhcCCCcc-cCccccccCCCCCccceeeecchhhhhhh
Q psy6952           8 LDQRNIYSNNELAFRTAERHLGIPAL-LDAEDMVEYAVPDRLSILTYLSQFYQVFV   62 (168)
Q Consensus         8 L~~~~~~eNl~lAF~vAE~~LGIp~l-LdpED~~~~~~PDekSVmTYVs~~y~~f~   62 (168)
                      .......+|++.+++.+++ +|||.. ++|+|+.+  .+|+++|++|+.+++++|.
T Consensus        55 ~~~~~~~~Ni~~~l~~~~~-~gi~~~~~~~~Dl~~--~~n~~~vl~~l~~l~~~~~  107 (107)
T cd00014          55 LSRFKRLENINLALNFAEK-LGVPVVNFDAEDLVE--DGDEKLVLGLLWSLIRKFL  107 (107)
T ss_pred             cchhhHHHHHHHHHHHHHH-cCCceeccCHHHHhh--CCCceeeHHHHHHHHHhhC
Confidence            3456678999999999986 999999 99999964  7999999999999998874

The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).

>smart00033 CH Calponin homology domain

Probab=95.52  E-value=0.0029  Score=44.65  Aligned_cols=45  Identities=29%  Similarity=0.216  Sum_probs=36.6

Q ss_pred             cChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecch
Q psy6952          11 RNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQ   56 (168)
Q Consensus        11 ~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~   56 (168)
                      ....+|++.+++.+++....+.+++|+|+.+.. ++.++++.|+.+
T Consensus        58 ~~~~~Ni~~~l~~~~~~g~~~~~~~~~Dl~~~~-k~~~~v~~~l~~  102 (103)
T smart00033       58 FKKIENINLALSFAEKLGGKLVLFEPEDLVEGN-KLILGVIWTLIL  102 (103)
T ss_pred             HHHHHhHHHHHHHHHHcCCeeeccCHHHHhhcc-hHHHHHHHHHHh
Confidence            456899999999999763348999999998744 899999888764

Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2d88_A	121	Solution Structure Of The Ch Domain From Human Mica		6e-13
1wku_A	254	High Resolution Structure Of The Human Alpha-Actini		1e-10
1tjt_A	250	X-Ray Structure Of The Human Alpha-Actinin Isoform		1e-10
2e9k_A	121	Solution Structure Of The Ch Domain From Human Mica		2e-10
1sjj_A	863	Cryo-Em Structure Of Chicken Gizzard Smooth Muscle		3e-10
2eyi_A	234	Crystal Structure Of The Actin-Binding Domain Of Hu		4e-10
2r0o_A	237	Crystal Structure Of The Actin-Binding Domain Of Hu		6e-09
2d87_A	128	Solution Structure Of The Ch Domain From Human Smoo		7e-09
1wyq_A	127	Solution Structure Of The Second Ch Domain Of Human		1e-07
1bkr_A	109	Calponin Homology (Ch) Domain From Human Beta-Spect		5e-07
1aa2_A	108	Calponin Homology (Ch) Domain From Human Beta-Spect		6e-07
2jv9_A	119	The Solution Structure Of Calponin Homology Domain		2e-06
2d89_A	119	Solution Structure Of The Ch Domain From Human Eh D		5e-06
1sh5_A	245	Crystal Structure Of Actin-Binding Domain Of Mouse		7e-05
3f7p_A	296	Crystal Structure Of A Complex Between Integrin Bet		1e-04
1mb8_A	243	Crystal Structure Of The Actin Binding Domain Of Pl		1e-04
1dxx_A	246	N-Terminal Actin-Binding Domain Of Human Dystrophin		2e-04
1bhd_A	118	Second Calponin Homology Domain From Utrophin Lengt		4e-04
3hoc_A	272	Structure Of The Actin-Binding Domain Of Human Fila		4e-04
1qag_A	226	Actin Binding Region Of The Dystrophin Homologue Ut		5e-04
2wfn_A	278	Filamin A Actin Binding Domain Length = 278		7e-04
3hop_A	272	Structure Of The Actin-Binding Domain Of Human Fila		8e-04

>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD++N+  NN+LAF  AE+ LGI  ++  ++M     PD+LS++ YL+QFY++F 
Sbjct: 55  IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114
Query: 63  N 63
           +
Sbjct: 115 D 115

>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+A L + +   N   AF  AE++L IP +LDAED+V    PD  +I+TY+S FY  F 
Sbjct: 186 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 245
Query: 63  NQKQGKSPA 71
             +Q ++ A
Sbjct: 246 GAEQAETAA 254

>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+A L + +   N   AF  AE++L IP +LDAED+V    PD  +I+TY+S FY  F 
Sbjct: 182 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 241
Query: 63  NQKQGKSPA 71
             +Q ++ A
Sbjct: 242 GAEQAETAA 250

>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 40/59 (67%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           I+F SL++ +   NN+LAF  AER  GIP +   ++M     PD+LS++ YLS+FY++F
Sbjct: 55  INFDSLNEDDAVENNQLAFDVAEREFGIPPVTTGKEMASAQEPDKLSMVMYLSKFYELF 113

>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+  L + +  +N   AF  AE++L IP +LDAED+V  A PD  +I+TY+S FY  F 
Sbjct: 167 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFS 226
Query: 63  NQKQGKSPA 71
             ++ ++ A
Sbjct: 227 GAQKAETAA 235

>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+  L + +  +N   AF  AE++L IP +LDAED+V  A PD  +I+TY+S FY  F 
Sbjct: 166 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFS 225
Query: 63  NQKQGKSPA 71
             ++   P 
Sbjct: 226 GAQEFLEPG 234

>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           I++  L + +  +N   AF  AE++L IP +LDAED+V  A PD  +I+TY+S FY  F
Sbjct: 171 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEEAIMTYVSSFYHAF 229

>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
            D+  L  +N   N E+AF +AE H   P LLD EDMV    PD   + TY+ +FY+  V
Sbjct: 53  FDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLV 112
Query: 63  NQ 64
            +
Sbjct: 113 QK 114

>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           +DF SL + N + N + AF  AE+ LG+  LLD ED V    PD  SI+TY++ +Y  F 
Sbjct: 53  LDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPED-VNVDQPDEKSIITYVATYYHYFS 111
Query: 63  NQK----QGKS 69
             K    +GKS
Sbjct: 112 KMKALAVEGKS 122

>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           IDF  L + N + N + AF  AE+HLG+  LLD ED +    PD  SI+TY+  +Y  F
Sbjct: 49  IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 106

>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           IDF  L + N + N + AF  AE+HLG+  LLD ED +    PD  SI+TY+  +Y  F
Sbjct: 48  IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPED-ISVDHPDEKSIITYVVTYYHYF 105

>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From Smoothelin-Like 1 Length = 119

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
            D+A LD      N  LAF TAE+      LL+ +DMV  AVPD   + TY+ + Y+  V
Sbjct: 50  FDYAELDPAKRRHNFTLAFSTAEKLADCAQLLEVDDMVRLAVPDSKCVYTYIQELYRSLV 109
Query: 63  NQ 64
            +
Sbjct: 110 QK 111

>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain Binding Protein 1 Length = 119

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+ SL+ ++I  NN+ A+      +GI  LL+  DMV  A+PD+L+++TYL   YQ+  
Sbjct: 55  IDYKSLNPQDIKENNKKAY-DGFASIGISRLLEPSDMVLLAIPDKLTVMTYL---YQIRA 110
Query: 63  NQKQGKS 69
           +   G S
Sbjct: 111 HFSSGPS 117

>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 1   MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           M ID   + ++    N + AF  AER LG+  LLD ED V+   PD  SI+TY+S  Y
Sbjct: 177 MLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLY 233

>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           ID   + ++    N + AF  AER LG+  LLD ED V+   PD  SI+TY+S  Y   
Sbjct: 235 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 292

>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           ID   + ++    N + AF  AER LG+  LLD ED V+   PD  SI+TY+S  Y   
Sbjct: 182 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSSLYDAM 239

>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 18  ELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 64
           E AF  A   LGI  LLD ED V+   PD+ SIL Y++  +QV   Q
Sbjct: 197 EHAFNIARYQLGIEKLLDPED-VDTTYPDKKSILMYITSLFQVLPQQ 242

>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin Length = 118

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 18  ELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ 64
           E AF  A+ +LGI  LLD ED V   +PD+ SI+ YL+  ++V   Q
Sbjct: 69  EHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIMYLTSLFEVLPQQ 114

>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Mutant E254k Length = 272

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 4   DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
           D+ S D     +N   A + A+  LGIP ++  E++V+  V D+ S++TYLSQF
Sbjct: 215 DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DKHSVMTYLSQF 267

>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 18  ELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           E AF  A+ +LGI  LLD ED V   +PD+ SI+ YL+  ++V 
Sbjct: 182 EHAFSKAQTYLGIEKLLDPED-VAVRLPDKKSIIXYLTSLFEVL 224

>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain Length = 278

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 4   DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
           D+ S D     +N   A + A+  LGIP ++  E++V+  V D  S++TYLSQF
Sbjct: 212 DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DEHSVMTYLSQF 264

>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Length = 272

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 4   DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQF 57
           D+ S D     +N   A + A+  LGIP ++  E++V+  V D  S++TYLSQF
Sbjct: 215 DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DEHSVMTYLSQF 267

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	1e-28
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	4e-28
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	1e-26
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	2e-26
1wyl_A	116	NEDD9 interacting protein with calponin homology a	3e-26
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	1e-25
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	3e-25
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	5e-25
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	5e-21
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	2e-20
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	3e-19
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	6e-16
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	8e-15
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	1e-14
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	4e-12
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	1e-10
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	2e-08
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	3e-10
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	2e-07

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121

 Score =  101 bits (253), Expect = 1e-28
 Identities = 28/65 (43%), Positives = 44/65 (67%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           IDF SLD++N+  NN+LAF  AE+ LGI  ++  ++M     PD+LS++ YL+QFY++F 
Sbjct: 55  IDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114

Query: 63  NQKQG 67
           +    
Sbjct: 115 DSGPS 119

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128

 Score =  100 bits (251), Expect = 4e-28
 Identities = 26/67 (38%), Positives = 36/67 (53%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
            D+  L  +N   N E+AF +AE H   P LLD EDMV    PD   + TY+ +FY+  V
Sbjct: 53  FDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLV 112

Query: 63  NQKQGKS 69
            +   K+
Sbjct: 113 QKGLVKT 119

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254

 Score =  100 bits (249), Expect = 1e-26
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+A L + +   N   AF  AE++L IP +LDAED+V    PD  +I+TY+S FY  F 
Sbjct: 186 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFA 245

Query: 63  NQKQGKSPA 71
             +Q ++ A
Sbjct: 246 GAEQAETAA 254

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118

 Score = 95.8 bits (239), Expect = 2e-26
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
             +  + + +     E AF  A+ +LGI  LLD ED+    +PD+ SI+ YL+  ++V  
Sbjct: 54  FSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAV-RLPDKKSIIMYLTSLFEVLP 112

Query: 63  NQKQ 66
            Q  
Sbjct: 113 QQVT 116

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116

 Score = 95.0 bits (237), Expect = 3e-26
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ++ + L           A + AE  LGI  ++ A+ +V     D L ++ YLS F+  F 
Sbjct: 53  LEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVA--GSDPLGLIAYLSHFHSAFK 110

Query: 63  NQKQG 67
           +    
Sbjct: 111 SGPSS 115

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 93.9 bits (234), Expect = 1e-25
 Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+ SL+ ++I  NN+ A+      +GI  LL+  DMV  A+PD+L+++TYL Q    F 
Sbjct: 55  IDYKSLNPQDIKENNKKAY-DGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFS 113

Query: 63  NQKQG 67
           +    
Sbjct: 114 SGPSS 118

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127

 Score = 93.2 bits (232), Expect = 3e-25
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           +DF SL + N + N + AF  AE+ LG+  LLD ED+     PD  SI+TY++ +Y  F 
Sbjct: 53  LDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDVNV-DQPDEKSIITYVATYYHYFS 111

Query: 63  NQKQGKSPAR 72
             K      +
Sbjct: 112 KMKALAVEGK 121

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109

 Score = 91.9 bits (229), Expect = 5e-25
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           IDF  L + N + N + AF  AE+HLG+  LLD ED+     PD  SI+TY+  +Y  F
Sbjct: 49  IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDISV-DHPDEKSIITYVVTYYHYF 106

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245

 Score = 85.0 bits (210), Expect = 5e-21
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID   + ++    N + AF  AER LG+  LLD ED+     PD  SI+TY+S  Y    
Sbjct: 179 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAMP 237

Query: 63  NQKQGK 68
                +
Sbjct: 238 RVPGAQ 243

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           ID   + ++    N + AF  AER LG+  LLD ED+     PD  SI+TY+S  Y   
Sbjct: 235 IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAM 292

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246

 Score = 80.4 bits (198), Expect = 3e-19
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)

Query: 3   IDFAS-LDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
            D+ S + Q++     E AF  A   LGI  LLD ED+     PD+ SIL Y++  +QV 
Sbjct: 181 FDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT-TYPDKKSILMYITSLFQVL 239

Query: 62  VNQKQ 66
             Q  
Sbjct: 240 PQQVS 244

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 73.4 bits (179), Expect = 6e-16
 Identities = 31/96 (32%), Positives = 49/96 (51%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
           ID+  L + +  +N   AF  AE++L IP +LDAED+V  A PD  +I+TY+S FY  F 
Sbjct: 167 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFS 226

Query: 63  NQKQGKSPARCNMFVNSTLRPATHYQVHLIRSAGQL 98
             ++ ++ A     V +  +          + A  L
Sbjct: 227 GAQKAETAANRICKVLAVNQENEQLMEDYEKLASDL 262

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272

 Score = 68.9 bits (168), Expect = 8e-15
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
            D+ S D     +N   A + A+  LGIP ++  E++V+    D+ S++TYLSQF + 
Sbjct: 214 PDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA 270

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245

 Score = 68.1 bits (166), Expect = 1e-14
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 1   MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
           +  D+ S D +    N   A + A+  LG+P ++  E+++     D  S++TYLSQF + 
Sbjct: 185 LCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA 243

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275

 Score = 61.5 bits (149), Expect = 4e-12
 Identities = 8/58 (13%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 1   MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           + I+ +  ++ +     E   + A++ LG    +   D+V     +    L +++  +
Sbjct: 221 IDINMSGFNETDDLKRAESMLQQADK-LGCRQFVTPADVV---SGNPKLNLAFVANLF 274

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 3   IDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           +++  + +         N      +  R LG    L  ED+VE    ++  IL   +   
Sbjct: 445 VNWNLVTKGETDDEKRLNATYIV-SVARKLGCSVFLLPEDIVE---VNQKMILILTASIM 500

Query: 59  QVFVNQ 64
              + +
Sbjct: 501 YWSLQR 506

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506

 Score = 51.2 bits (122), Expect = 2e-08
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
            D A+LD ++     EL    AER +     L AE++VE         L +++Q +    
Sbjct: 199 CDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFVAQIFHERN 254

Query: 63  NQKQGKSPARCNM 75
              +    A   M
Sbjct: 255 GLNKDGKYAFAEM 267

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 56.7 bits (136), Expect = 3e-10
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 3   IDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           +D+  +           N  LA   A R LG    +  ED+V         +L ++    
Sbjct: 456 VDYNLVTDGSTEELAIQNARLAISIA-RKLGAVIFILPEDIVA---VRPRLVLHFIGSLM 511

Query: 59  QV 60
            V
Sbjct: 512 AV 513

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513

 Score = 48.6 bits (115), Expect = 2e-07
 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
              A L   ++    E   + AE+ L     L    MV     +    L +++  +   
Sbjct: 208 CSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAMV---AGNPKLNLAFVAHLFNTH 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1bkr_A	109	Spectrin beta chain; filamentous actin-binding dom	99.77
1wyq_A	127	Spectrin beta chain, brain 2; NPPSFA, structural g	99.77
2d88_A	121	Protein mical-3; all alpha, calponin homology doma	99.76
2d87_A	128	Smoothelin splice isoform L2; all alpha, calponin	99.75
1wyl_A	116	NEDD9 interacting protein with calponin homology a	99.74
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	99.72
2d89_A	119	EHBP1 protein; all alpha, calponin homology domain	99.72
1bhd_A	118	Utrophin; calponin homology, actin binding, struct	99.71
1wku_A	254	Alpha-actinin 3; calponin homology domain, actin b	99.61
4b7l_A	347	Filamin-B; structural protein, FR 1 filamin hinge	99.57
3f7p_A	296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	99.52
3hoc_A	272	Filamin-A; calponin homology domain, actin binding	99.49
2wa7_A	245	Filamin-B; disease mutation, skeletal dysplasia, s	99.47
1sh5_A	245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	99.44
1dxx_A	246	Dystrophin; structural protein, muscular dystrophy	99.37
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	99.09
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	99.04
1pxy_A	506	Fimbrin-like protein; calponin homology, F-actin-b	98.93
1wjo_A	124	T-plastin; CH domain, actin binding, structural ge	98.93
1rt8_A	513	Fimbrin; filamentous actin binding domain (ABD), c	98.9
1aoa_A	275	T-fimbrin; actin-binding protein, calcium-binding,	97.26
2odv_A	235	Plectin 1, HD1; plakin domain, spectrin repeat, cy	94.35

>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A

Probab=99.77  E-value=5.9e-20  Score=136.76  Aligned_cols=63  Identities=41%  Similarity=0.634  Sum_probs=59.8

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhcc
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   64 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~   64 (168)
                      +||||+.|+++++.+|+++||++||++||||++|+|||| ..+.||++||||||++||++|+++
T Consensus        47 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv-~~~~pD~ksi~tYvs~~~~~f~~~  109 (109)
T 1bkr_A           47 DLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTYYHYFSKM  109 (109)
T ss_dssp             GGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCHHHcCcCCHHHHHHHHHHHHHHHcCCCccCCHHHc-cCCCCcHHHHHHHHHHHHHHhhcC
Confidence            479999999999999999999999999999999999998 568899999999999999999875

>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}

Probab=99.77  E-value=1.3e-19  Score=138.39  Aligned_cols=70  Identities=37%  Similarity=0.544  Sum_probs=65.3

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA   71 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~   71 (168)
                      +||||+.|.+.++.+|+++||++||++||||++|+|||| ..+.||++||||||++||++|++.++.+.++
T Consensus        51 ~lid~~~l~~~~~~~n~~~af~~Ae~~Lgi~~ll~~eDv-~~~~pDeksimtYvs~l~~~~~~~~~~~~~~  120 (127)
T 1wyq_A           51 DLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPEDV-NVDQPDEKSIITYVATYYHYFSKMKALAVEG  120 (127)
T ss_dssp             TTCCTTTSCSSCCHHHHHHHHHHHHHTTCCCCCSCTTTS-CSSSCCHHHHHHHHHHHHHHHHHSSSCCSSC
T ss_pred             CcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHh-ccCCCcHHHHHHHHHHHHHHhhcCCcccccc
Confidence            589999999999999999999999999999999999999 5688999999999999999999998876654

>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A

Probab=99.76  E-value=1.9e-19  Score=136.39  Aligned_cols=66  Identities=42%  Similarity=0.770  Sum_probs=62.1

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ   66 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~   66 (168)
                      +||||+.|+++++.+|+++||++||++||||++|+||||+..+.||++||||||++||++|++..+
T Consensus        53 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~~~~~~~~p  118 (121)
T 2d88_A           53 DLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSGP  118 (121)
T ss_dssp             TTSCTTTSCTTCHHHHHHHHHHHHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHHHHHSSCCS
T ss_pred             CcCCHHHcCccCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHcccCCC
Confidence            589999999999999999999999999999999999999766789999999999999999998754

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A

Probab=99.75  E-value=2.9e-19  Score=136.72  Aligned_cols=69  Identities=38%  Similarity=0.605  Sum_probs=64.1

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKS   69 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~   69 (168)
                      +||||+.|+++++.+|+++||++||++||||++|+||||++...||+++|||||++||++|++.....+
T Consensus        51 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~~~~~~~~k~  119 (128)
T 2d87_A           51 EAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKT  119 (128)
T ss_dssp             TTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             CcCCHHHcCccCHHHHHHHHHHHHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHHHhhcccccc
Confidence            589999999999999999999999999999999999999888889999999999999999998765543

>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A

Probab=99.74  E-value=2.8e-19  Score=134.45  Aligned_cols=65  Identities=25%  Similarity=0.393  Sum_probs=60.7

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG   67 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~   67 (168)
                      +||||+.|+++++.+|+++||++||++||||++|+||||+..  ||++||||||++||++|++.+..
T Consensus        51 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~--~d~ksv~tYvs~l~~~~~~~~~~  115 (116)
T 1wyl_A           51 GLLEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVAG--SDPLGLIAYLSHFHSAFKSGPSS  115 (116)
T ss_dssp             TSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCSCHHHHHHT--SCHHHHHHHHHHHHHHSCCSCSC
T ss_pred             CCCCHHHhccCCHHHHHHHHHHHHHHHcCCccccCHHHHhcC--CchhHHHHHHHHHHHHccCCCCC
Confidence            589999999999999999999999999999999999999753  99999999999999999987654

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1

Probab=99.72  E-value=1.2e-18  Score=163.10  Aligned_cols=112  Identities=31%  Similarity=0.484  Sum_probs=95.4

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCch-hhhhcccc
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSPA-RCNMFVNS   79 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~~-~~~~~~~~   79 (168)
                      ++|||+.+.+.++.+|++.||++|+++||||++|+||||++++.||++||||||++||++|++.++.++++ ++.++++.
T Consensus       165 ~~~~~~~~~~~~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~  244 (863)
T 1sjj_A          165 ELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYHAFSGAQKAETAANRICKVLAV  244 (863)
T ss_dssp             SSSCSGGGGSCCCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTTTTCCCSCSTTCCTTCCCCTTT
T ss_pred             CCcChhhCCCCCHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999999988889999999999999999999998876654 55555433


Q ss_pred             ccCcchhhHHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952          80 TLRPATHYQVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV  119 (168)
Q Consensus        80 ~~~~~~~~~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~  119 (168)
                      ..+     .+++++  .|++.++.|++||+.+..++..+.
T Consensus       245 ~~~-----~e~l~~--~y~~~~~el~~Wi~~~~~~l~~~~  277 (863)
T 1sjj_A          245 NQE-----NEQLME--DYEKLASDLLEWIRRTIPWLENRA  277 (863)
T ss_dssp             HHH-----HHHHHH--HHHHHHHHHHHHHHHHGGGSSCCC
T ss_pred             chh-----hHHHHH--HHHHHHHHHHHHHHHHHHHHhccC
Confidence            322     455666  678999999999999999887653

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.1e-18  Score=131.74  Aligned_cols=66  Identities=36%  Similarity=0.586  Sum_probs=61.5

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG   67 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~   67 (168)
                      +||||+.+.++++.+|+++||++| ++||||++|+||||++.+.||+++|||||++||++|++.+..
T Consensus        53 ~lid~~~l~~~~~~~n~~~af~~a-~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~~f~~~~~~  118 (119)
T 2d89_A           53 DLIDYKSLNPQDIKENNKKAYDGF-ASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRAHFSSGPSS  118 (119)
T ss_dssp             TTSCGGGCCTTCSHHHHHHHHHHH-HHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHSCCCCC
T ss_pred             CcCChhhhcccCHHHHHHHHHHHH-HHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHHHccCCCCC
Confidence            489999999999999999999999 589999999999998777899999999999999999987764

>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1

Probab=99.71  E-value=4e-19  Score=134.01  Aligned_cols=66  Identities=30%  Similarity=0.442  Sum_probs=57.3

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG   67 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~   67 (168)
                      +||||+.|+++++.+|+++||++||++||||++|+|||| ..+.||++||||||++||++|++.+..
T Consensus        52 ~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv-~~~~pD~ksvmtYvs~l~~~~~~~~~~  117 (118)
T 1bhd_A           52 DLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDV-AVRLPDKKSIIMYLTSLFEVLPQQVTI  117 (118)
T ss_dssp             GGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSCHHHH-HTSCCCHHHHHHHHHHHHHHC------
T ss_pred             CcCCHHHhCcCCHHHHHHHHHHHHHHHcCCCcccCHHHh-hcCCCcHHHHHHHHHHHHHHCcCCCCC
Confidence            478999999999999999999999999999999999999 467899999999999999999987653

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K

Probab=99.61  E-value=1.4e-16  Score=133.07  Aligned_cols=70  Identities=40%  Similarity=0.640  Sum_probs=61.8

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCCc
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKSP   70 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~~   70 (168)
                      ++|||+.+.+.++.+|++.||++|+++||||++|+||||++.+.||+++|||||++||++|++..+.+++
T Consensus       184 ~~id~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~~~~~~~~  253 (254)
T 1wku_A          184 DLIDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAGAEQAETA  253 (254)
T ss_dssp             TSCCGGGCCTTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHHC------
T ss_pred             CcccccccCcCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhccchhhhc
Confidence            4799999999999999999999999999999999999998878899999999999999999999887765

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A

Probab=99.57  E-value=6e-16  Score=134.69  Aligned_cols=64  Identities=28%  Similarity=0.462  Sum_probs=59.4

Q ss_pred             Cc-CCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952           2 KI-DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ   66 (168)
Q Consensus         2 LI-D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~   66 (168)
                      ++ ||+.++++++.+|+++||++||++||||++|+||||+. ..|||+||||||++||+++.++..
T Consensus       182 ~~~d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~-~~pDeksimtYvs~~~~~~~~~~~  246 (347)
T 4b7l_A          182 LCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKAKLKPGA  246 (347)
T ss_dssp             SSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTC-TTCCHHHHHHHHTTGGGCCCCTTC
T ss_pred             cccchhhcCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCC-CCCChhHHHHHHHHHhhhccCccc
Confidence            56 89999999999999999999999999999999999964 689999999999999999987643

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}

Probab=99.52  E-value=1.2e-15  Score=130.93  Aligned_cols=64  Identities=36%  Similarity=0.585  Sum_probs=57.9

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQK   65 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~   65 (168)
                      ++|||+.+.+.++.+|+++||++||++||||++|+|||+ ....||++||||||++||++|++.+
T Consensus       233 ~lid~~~l~~~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi-~~~~pDeksimtyvs~ly~~fp~lp  296 (296)
T 3f7p_A          233 LLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV-DVPQPDEKSIITYVSSLYDAMPRVP  296 (296)
T ss_dssp             GGCCHHHHTTSCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHTCC---
T ss_pred             CccCHHHcCcccHHHHHHHHHHHHHHhCCCCccCCHHHh-cCCCCcHHHHHHHHHHHHHHCcCCC
Confidence            478999999999999999999999999999999999998 5578999999999999999998753

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A

Probab=99.49  E-value=5e-15  Score=125.54  Aligned_cols=59  Identities=34%  Similarity=0.525  Sum_probs=53.9

Q ss_pred             CCc-CCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhh
Q psy6952           1 MKI-DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV   60 (168)
Q Consensus         1 ~LI-D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~   60 (168)
                      +|+ ||+.+++.++.+|++.||++||++||||++|+||||+. +.||++||||||++||++
T Consensus       211 ~li~d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~-~~pD~ksimtYvs~~~~a  270 (272)
T 3hoc_A          211 GLCPDWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVD-PNVDKHSVMTYLSQFPKA  270 (272)
T ss_dssp             TSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTC-TTCCHHHHHHHHTTCC--
T ss_pred             ccccchhhcCccCHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCChHHHHHHHHHhhcc
Confidence            467 89999999999999999999999999999999999965 689999999999999975

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A

Probab=99.47  E-value=1e-14  Score=120.94  Aligned_cols=59  Identities=31%  Similarity=0.485  Sum_probs=55.2

Q ss_pred             CCc-CCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhh
Q psy6952           1 MKI-DFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV   60 (168)
Q Consensus         1 ~LI-D~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~   60 (168)
                      +++ ||+.++++++.+|++.||++|+++||||++|+||||+. +.||++||||||++||++
T Consensus       184 ~~i~~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~-~~~d~ksi~tyvs~~~~~  243 (245)
T 2wa7_A          184 GLCPDWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIH-PDVDEHSVMTYLSQFPKA  243 (245)
T ss_dssp             TSSTTGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTC-TTCCHHHHHHHHTHHHHC
T ss_pred             cccccccccCcccHHHHHHHHHHHHHHhCCCCccCCHHHhcc-CCCcHHHHHHHHHHHhcc
Confidence            367 89999999999999999999999999999999999965 789999999999999985

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A

Probab=99.44  E-value=8.2e-15  Score=121.08  Aligned_cols=67  Identities=36%  Similarity=0.572  Sum_probs=57.4

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGK   68 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~   68 (168)
                      ++|||+.+.+.++.+|++.||++|+++||||++|+|||+ ....||+++|||||++||++|++.++.+
T Consensus       177 ~~i~~~~l~~~~~~~n~~~a~~~a~~~lGi~~~l~peDi-~~~~pd~k~i~tyva~l~~~~~~~~~~~  243 (245)
T 1sh5_A          177 MLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV-DVPQPDEKSIITYVSSLYDAMPRVPGAQ  243 (245)
T ss_dssp             TTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHHCC------
T ss_pred             CCCCHHHcccCCHHHHHHHHHHHHHHhCCCCccCCHHHh-ccCCCcHHHHHHHHHHHHHHcCCCCCCC
Confidence            478999999999999999999999999999999999999 4568999999999999999999876543

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A

Probab=99.37  E-value=3.7e-14  Score=117.51  Aligned_cols=65  Identities=37%  Similarity=0.510  Sum_probs=58.6

Q ss_pred             CCcCCccCC-CcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952           1 MKIDFASLD-QRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ   66 (168)
Q Consensus         1 ~LID~dsL~-~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~   66 (168)
                      +++||+.+. +.++.+|++.||++|+++||||++|+|||++ ...||+++|||||+++|++|++.+.
T Consensus       179 ~li~~~~~~~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~-~~~pD~k~i~tyva~l~~~~~~~~~  244 (246)
T 1dxx_A          179 DLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVD-TTYPDKKSILMYITSLFQVLPQQVS  244 (246)
T ss_dssp             GGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHS-SSSCCHHHHHHHHHHHHTTSCCCEE
T ss_pred             CccchhhhcccCCHHHHHHHHHHHHHHhCCCCccCCHHHhh-cCCCcHHHHHHHHHHHHHHccCCCC
Confidence            368888886 7899999999999999999999999999995 5789999999999999999987653

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=99.09  E-value=4.4e-11  Score=108.18  Aligned_cols=65  Identities=15%  Similarity=0.217  Sum_probs=57.4

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKS   69 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~   69 (168)
                      +++||+.++++++.+|++.||++|++ ||||++|+||||+.   ||++++||||+++|++|++.++...
T Consensus       206 ~~i~~~~l~~~~~~~n~~~a~~~a~~-lgi~~~l~peDi~~---~~~k~il~yva~l~~~~~~~~~~~~  270 (513)
T 1rt8_A          206 ELCSRAPLQTTDVLQRAEQVLQNAEK-LDCRKYLTPTAMVA---GNPKLNLAFVAHLFNTHPGLEPLNE  270 (513)
T ss_dssp             TTCCSGGGGCCCHHHHHHHHHHHHHT-TTCCCSCCHHHHHT---TCHHHHHHHHHHHHHHCCCCCC---
T ss_pred             cccccCCCCccCHHHHHHHHHHHHHH-cCCCccCCHHHhcC---CCHHHHHHHHHHHHhhhcccCcccc
Confidence            47899999999999999999999987 99999999999964   7899999999999999998875543

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=99.04  E-value=3.6e-11  Score=108.50  Aligned_cols=59  Identities=19%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             CCcCCccCCCc----ChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhc
Q psy6952           1 MKIDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   63 (168)
Q Consensus         1 ~LID~dsL~~~----~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~   63 (168)
                      ++|||+.+.+.    ++.+|++.||++|+ +||||++|+|||++.   ||++||||||++||++|.+
T Consensus       443 ~li~~~~l~~~~s~~~~~~N~~~a~~~a~-~lGi~~~l~peDi~~---~d~ksi~tyv~~l~~~~~~  505 (506)
T 1pxy_A          443 RVVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLLPEDIVE---VNQKMILILTASIMYWSLQ  505 (506)
T ss_dssp             GGCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCCHHHHHT---TCHHHHHHHHHHHHHHHTT
T ss_pred             CeeehhhcccCCCchhHHHHHHHHHHHHH-HcCCCCcCCHHHccC---CChhHHHHHHHHHHHHHhh
Confidence            37899999874    57899999999996 699999999999963   6999999999999999864

>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B

Probab=98.93  E-value=3.3e-10  Score=102.25  Aligned_cols=63  Identities=24%  Similarity=0.330  Sum_probs=55.4

Q ss_pred             CcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCC
Q psy6952           2 KIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGK   68 (168)
Q Consensus         2 LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~   68 (168)
                      ++||+.++++++.+|++.||++|+ +||||++++||||+.   ++++++||||+++|++|++.+...
T Consensus       198 ~i~~~~l~~~~~~~n~~~a~~~a~-~lGi~~~l~peDi~~---~~~k~v~tyva~l~~~~~~~~~~~  260 (506)
T 1pxy_A          198 HCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAEEIVE---GSSTLNLAFVAQIFHERNGLNKDG  260 (506)
T ss_dssp             GCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCCHHHHHT---TCHHHHHHHHHHHHHHCCCCC---
T ss_pred             ccccccCCcCCHHHHHHHHHHHHH-HcCCCCcCCHHHHhc---CChhHHHHHHHHHhhhcCCCCCcc
Confidence            689999999999999999999998 599999999999964   466999999999999999876543

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A

Probab=98.93  E-value=2.7e-10  Score=86.93  Aligned_cols=63  Identities=19%  Similarity=0.246  Sum_probs=53.8

Q ss_pred             CCcCCc-----cCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCC
Q psy6952           1 MKIDFA-----SLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQG   67 (168)
Q Consensus         1 ~LID~d-----sL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~   67 (168)
                      .+|||+     .|+..++.+|.+.||++|+ ++|++.+|.|||+++.   ++|+|||||+++++++-+.+..
T Consensus        53 ~~vd~~lv~~~~L~~~d~~~Na~~ais~Ar-klG~~~~l~pEDIve~---~pK~ilt~va~l~~~~~~~~~~  120 (124)
T 1wjo_A           53 GCINYDLVKSGNLTEDDKHNNAKYAVSMAR-RIGARVYALPEDLVEV---KPKMVMTVFACLMGRGMKRVSG  120 (124)
T ss_dssp             TSCCTTTSCCSSCCHHHHHHHHHHHHHHHH-HTCCSCCCCHHHHHHT---CTTTTTHHHHHHHHHSCCCCCC
T ss_pred             CccCHHHhcCCCCCHHHHHHHHHHHHHHHH-HcCCCcccCHHHHhcC---cchhhHHHHHHHHHHHhhccCC
Confidence            367888     6677889999999999996 6999999999999874   5699999999999987665443

>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1

Probab=98.90  E-value=2e-10  Score=103.93  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=48.5

Q ss_pred             CCcCCccCCCc----ChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhh
Q psy6952           1 MKIDFASLDQR----NIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ   59 (168)
Q Consensus         1 ~LID~dsL~~~----~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~   59 (168)
                      ++|||+.+.+.    ++.+|++.||++|+ +||||++|+||||+..   +++||||||++||+
T Consensus       454 ~~i~~~~l~~~~~~~~~~~n~~~af~~A~-~lGi~~~l~peDi~~~---~pksi~tyva~l~~  512 (513)
T 1rt8_A          454 EYVDYNLVTDGSTEELAIQNARLAISIAR-KLGAVIFILPEDIVAV---RPRLVLHFIGSLMA  512 (513)
T ss_dssp             GGCCGGGCCCCCSHHHHHHHHHHHHHHHH-HTTCCCCCCHHHHHTT---CHHHHHHHHHHHHT
T ss_pred             CcCCHHhhccccChhhHHHHHHHHHHHHH-HcCCCccCCHHHhcCC---CcccHHHHHHHHHh
Confidence            47899999875    79999999999997 5999999999999653   45999999999986

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1

Probab=97.26  E-value=2.4e-05  Score=65.27  Aligned_cols=45  Identities=16%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             ChhhhHHHHHHHH--HHhcCCCcccCccccccCCCCCccceeeecchhhh
Q psy6952          12 NIYSNNELAFRTA--ERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ   59 (168)
Q Consensus        12 ~~~eNl~lAF~vA--E~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~   59 (168)
                      +.....+.|-.+.  .++||||++|+||||+   .||++++||||+++|+
T Consensus       229 ~~~~~~~n~~~a~~~A~~lGi~~~l~peDi~---~~~~k~i~tyva~Lfn  275 (275)
T 1aoa_A          229 NETDDLKRAESMLQQADKLGCRQFVTPADVV---SGNPKLNLAFVANLFN  275 (275)
T ss_dssp             TCSSHHHHHHHHHHHHTTTTCCCSCCHHHHH---TTCHHHHHHHHHHHHC
T ss_pred             CccCHHHHHHHHHHHHHHcCCCCcCCHHHcC---CCChhHHHHHHHHHhC
Confidence            3444455544333  3589999999999996   4899999999999985

>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A

Probab=94.35  E-value=0.026  Score=46.51  Aligned_cols=30  Identities=13%  Similarity=-0.074  Sum_probs=25.1

Q ss_pred             HHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952          88 QVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV  119 (168)
Q Consensus        88 ~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~  119 (168)
                      .+.+++  +|++++++|++||++++.|++++.
T Consensus         9 ~e~~~~--eYe~~as~Ll~WI~~~~~~l~~r~   38 (235)
T 2odv_A            9 LQLRWQ--EYRELVLLLLQWMRHHTAAFEERR   38 (235)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC
Confidence            355665  789999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1bhda_	108	a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI	1e-19
d1sh5a2	110	a.40.1.1 (A:128-237) Actin binding domain of plect	1e-18
d1dxxa2	127	a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie	5e-17
d1bkra_	108	a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens)	6e-16
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	7e-11
d1pxya_	500	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	4e-10
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	3e-09
d1rt8a_	505	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-08
d1wjoa_	124	a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin	1e-05
d1aoaa2	116	a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros	7e-05

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (190), Expect = 1e-19
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQV 60
             +  + + +     E AF  A+ +LGI  LLD ED+    +PD+ SI+ YL+  ++V
Sbjct: 51  FSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAV-RLPDKKSIIMYLTSLFEV 107

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 1e-18
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           ID   + ++    N + AF  AER LG+  LLD ED+     PD  SI+TY+S  Y   
Sbjct: 52  IDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV-PQPDEKSIITYVSSLYDAM 109

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (173), Expect = 5e-17
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
              + + Q++     E AF  A   LGI  LLD ED+     PD+ SIL Y++  +QV  
Sbjct: 63  DWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDVDT-TYPDKKSILMYITSLFQVLP 121

Query: 63  NQKQ 66
            Q  
Sbjct: 122 QQVS 125

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 6e-16
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
           IDF  L + N + N + AF  AE+HLG+  LLD ED+     PD  SI+TY+  +Y  F
Sbjct: 48  IDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDIS-VDHPDEKSIITYVVTYYHYF 105

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.3 bits (138), Expect = 7e-11
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 3   IDFASLDQRNI----YSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           +++  + +         N      +  R LG    L  ED+VE    ++  IL   +   
Sbjct: 439 VNWNLVTKGETDDEKRLNATYIV-SVARKLGCSVFLLPEDIVE---VNQKMILILTASIM 494

Query: 59  QVFVNQ 64
              + +
Sbjct: 495 YWSLQR 500

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 55.4 bits (133), Expect = 4e-10
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV 62
            D A+LD ++     EL    AER +     L AE++VE         L +++Q +    
Sbjct: 193 CDPATLDAKDPLERAELVLSHAER-MNCKRYLTAEEIVE---GSSTLNLAFVAQIFHERN 248

Query: 63  NQKQ 66
              +
Sbjct: 249 GLNK 252

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.4 bits (125), Expect = 3e-09
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 3   IDFASLDQRN----IYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           +D+  +   +       N  LA   A R LG    +  ED+V         +L ++    
Sbjct: 448 VDYNLVTDGSTEELAIQNARLAISIA-RKLGAVIFILPEDIVA---VRPRLVLHFIGSLM 503

Query: 59  QV 60
            V
Sbjct: 504 AV 505

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 3   IDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
              A L   ++    E   + AE  L     L    MV     +    L +++  +   
Sbjct: 200 CSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLTPTAMVA---GNPKLNLAFVAHLFNTH 254

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 2   KIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF 61
            +   +L + + ++N + A  +  R +G       ED+VE        ++T  +      
Sbjct: 59  LVKSGNLTEDDKHNNAKYAV-SMARRIGARVYALPEDLVE---VKPKMVMTVFACLMGRG 114

Query: 62  VNQKQGKS 69
           + +  G S
Sbjct: 115 MKRVSGPS 122

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 7e-05
 Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 1   MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFY 58
           + I+ +  ++ +     E   + A+  LG    +   D+V     +    L +++  +
Sbjct: 62  IDINMSGFNETDDLKRAESMLQQAD-KLGCRQFVTPADVVS---GNPKLNLAFVANLF 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1bkra_	108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1sh5a2	110	Actin binding domain of plectin {Human (Homo sapie	99.62
d1bhda_	108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1dxxa2	127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	99.05
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	98.9
d1rt8a_	505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	98.87
d1pxya_	500	Fimbrin (Plastin), actin-crosslinking domain {Thal	98.49
d1wjoa_	124	Fimbrin (Plastin), actin-crosslinking domain {Huma	98.11
d1aoaa2	116	Fimbrin (Plastin), actin-crosslinking domain {Huma	97.9
d1hcia1	125	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1sh5a1	120	Actin binding domain of plectin {Human (Homo sapie	80.92

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: beta-spectrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-17  Score=121.80  Aligned_cols=63  Identities=41%  Similarity=0.634  Sum_probs=59.5

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhcc
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   64 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~   64 (168)
                      +++|++.+.+.+..+|+++||++||+++|||++|+|||+ ..+.||++||||||++||++|+++
T Consensus        46 ~~~~~~~l~~~~~~~~~~~a~~~ae~~lgip~ll~~ed~-~~~~pD~~si~~Yvs~~~~~f~~~  108 (108)
T d1bkra_          46 DLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTYYHYFSKM  108 (108)
T ss_dssp             GGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHHHTCC
T ss_pred             CcccHHhcccCCHHHHHHHHHHHHHHhcCCCCcCCHHhc-cCCCCcHHHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999999999999999999 468899999999999999999875

>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.3e-17  Score=122.60  Aligned_cols=61  Identities=39%  Similarity=0.632  Sum_probs=57.5

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhh
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV   62 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~   62 (168)
                      ++|||+.+++.++.+|+++||++||++||||++|+|+|| ....||++||||||++||++|+
T Consensus        50 ~~id~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll~~eD~-~~~~pD~~sv~~Yvs~ly~~~P  110 (110)
T d1sh5a2          50 MLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDV-DVPQPDEKSIITYVSSLYDAMP  110 (110)
T ss_dssp             TTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHHHCC
T ss_pred             ccCChhhcCccCHHHHHHHHHHHHHHcCCCCCCCCHHHH-ccCCCcHHHHHHHHHHHHHhCc
Confidence            478999999999999999999999999999999999999 4688999999999999999985

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Utrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.1e-16  Score=116.90  Aligned_cols=60  Identities=32%  Similarity=0.512  Sum_probs=55.7

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhh
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVF   61 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f   61 (168)
                      ++||++.+.+.++.+|+++||++|+++||||++|+|+||. ...||++||||||++||+++
T Consensus        49 ~~i~~~~l~~~~~~~~~~~af~~a~~~lgip~ll~~~D~~-~~~pD~~si~~Yvs~~y~~l  108 (108)
T d1bhda_          49 DLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVA-VRLPDKKSIIMYLTSLFEVL  108 (108)
T ss_dssp             GGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSCHHHHH-TSCCCHHHHHHHHHHHHHHC
T ss_pred             cccChhhcCcCCHHHHHHHHHHHHHHhCCCCCCCCHHHhc-cCCCcHHHHHHHHHHHHHhC
Confidence            3689999999999999999999999999999999999995 57899999999999999863

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-16  Score=118.85  Aligned_cols=65  Identities=37%  Similarity=0.556  Sum_probs=59.0

Q ss_pred             CCcCCcc-CCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCC
Q psy6952           1 MKIDFAS-LDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQ   66 (168)
Q Consensus         1 ~LID~ds-L~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~   66 (168)
                      ++||+++ +++.++.+|+++||++|++++|||++++|+|+ ....||++||||||++||++|+++.+
T Consensus        60 ~li~~~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll~~~d~-~~~~pD~ksi~~Yvs~l~~~~~~~~~  125 (127)
T d1dxxa2          60 DLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDV-DTTYPDKKSILMYITSLFQVLPQQVS  125 (127)
T ss_dssp             GGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHH-SSSSCCHHHHHHHHHHHHTTSCCCEE
T ss_pred             ccccchhhcCcCCHHHHHHHHHHHHHHhCCCCCcCCHHHh-ccCCCcHHHHHHHHHHHHHHcCCccc
Confidence            3688866 77889999999999999999999999999999 56789999999999999999998764

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=3.9e-11  Score=106.25  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=57.7

Q ss_pred             CCcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCC
Q psy6952           1 MKIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKS   69 (168)
Q Consensus         1 ~LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~   69 (168)
                      .++|++.++..++.+|++.||+.|| +||||++|+|||++   .||++++||||+++|+.|++.+....
T Consensus       198 ~l~~~~~~~~~~~~~n~~~a~~~ae-~lgi~~~l~p~Div---~~~~k~~l~~va~l~~~~p~l~~~~~  262 (505)
T d1rt8a_         198 ELCSRAPLQTTDVLQRAEQVLQNAE-KLDCRKYLTPTAMV---AGNPKLNLAFVAHLFNTHPGLEPLNE  262 (505)
T ss_dssp             TTCCSGGGGCCCHHHHHHHHHHHHH-TTTCCCSCCHHHHH---TTCHHHHHHHHHHHHHHCCCCCC---
T ss_pred             CccChhhcCcCCHHHHHHHHHHHHH-HcCCCccCCHHHhc---CCChhhHHHHHHHHhhcCCCCCcccc
Confidence            4789999999999999999999997 59999999999995   48999999999999999998876654

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=1.3e-10  Score=103.06  Aligned_cols=58  Identities=17%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             CCcCCccCCCcCh----hhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhh
Q psy6952           1 MKIDFASLDQRNI----YSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFV   62 (168)
Q Consensus         1 ~LID~dsL~~~~~----~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~   62 (168)
                      ++|||+.+.+.+.    +.|++.||++|+ +||||++|+|||++   .|||+||||||++|+++--
T Consensus       437 ~~id~~~~~~~~~~~~~~~N~~~a~~~a~-~lGip~ll~peDv~---~~deksv~tyvs~l~~~~l  498 (500)
T d1pxya_         437 RVVNWNLVTKGETDDEKRLNATYIVSVAR-KLGCSVFLLPEDIV---EVNQKMILILTASIMYWSL  498 (500)
T ss_dssp             GGCCTTSCCCSCSHHHHHHHHHHHHHHHH-HHTCCCCCCHHHHH---TTCHHHHHHHHHHHHHHHT
T ss_pred             CccCHhhcCCCCCchHHHHHHHHHHHHHH-HcCCCccCCHHHCC---CCCcchhHHHHHHHHHHHh
Confidence            3789999987654    668999999996 59999999999994   5999999999999987643

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.87  E-value=1.6e-10  Score=102.22  Aligned_cols=54  Identities=20%  Similarity=0.359  Sum_probs=47.2

Q ss_pred             CcCCccCCCcC----hhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhh
Q psy6952           2 KIDFASLDQRN----IYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ   59 (168)
Q Consensus         2 LID~dsL~~~~----~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~   59 (168)
                      +|||+.+.+.+    +.+|++.||++|++ ||||++|+|||++   .||+|||||||+++|.
T Consensus       447 ~i~~~~~~~~~~~e~~~~n~~~a~~~A~~-lgi~~ll~peDi~---~~~~ksimtyvssL~~  504 (505)
T d1rt8a_         447 YVDYNLVTDGSTEELAIQNARLAISIARK-LGAVIFILPEDIV---AVRPRLVLHFIGSLMA  504 (505)
T ss_dssp             GCCGGGCCCCCSHHHHHHHHHHHHHHHHH-TTCCCCCCHHHHH---TTCHHHHHHHHHHHHT
T ss_pred             CcCHHHhcCCCChhhHHHHHHHHHHHHHH-cCCCccCCHHHcC---CCCcchhHHhhhHHhc
Confidence            68999987654    55699999999985 9999999999995   4899999999999885

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.49  E-value=2.3e-08  Score=88.33  Aligned_cols=64  Identities=22%  Similarity=0.297  Sum_probs=55.6

Q ss_pred             CcCCccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhccCCCCC
Q psy6952           2 KIDFASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVNQKQGKS   69 (168)
Q Consensus         2 LID~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~~~~~~~   69 (168)
                      ++|++.+...+..+|++.||+.|+ .||||++|+|||++   .++++++|+||+++|+.|++.+..+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~a~~~a~-~lgip~~l~peDI~---~~~~k~~l~~va~lf~~~p~~~~~~~  255 (500)
T d1pxya_         192 HCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAEEIV---EGSSTLNLAFVAQIFHERNGLNKDGK  255 (500)
T ss_dssp             GCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCCHHHHH---TTCHHHHHHHHHHHHHHCCCCC----
T ss_pred             ccChhhcCcCCHHHHHHHHHHHHH-HhCCCccCCHHHhc---CCcHHHHHHHHHHHHHhccccccccc
Confidence            689999999999999999999886 59999999999995   47889999999999999998876554

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=4.9e-07  Score=65.94  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             CcCCccC-----CCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhhhhhc
Q psy6952           2 KIDFASL-----DQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQVFVN   63 (168)
Q Consensus         2 LID~dsL-----~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~~f~~   63 (168)
                      .|||+.+     .+.+..+|++.||+.|++ +||+..++|||+++   +++++||+|+.+++.+.-+
T Consensus        54 ~i~~~~~~~~~~~~~~~~~N~~~al~~~~~-lgi~~~i~~eDI~~---gn~k~iL~~i~~L~~~~~~  116 (124)
T d1wjoa_          54 CINYDLVKSGNLTEDDKHNNAKYAVSMARR-IGARVYALPEDLVE---VKPKMVMTVFACLMGRGMK  116 (124)
T ss_dssp             SCCTTTSCCSSCCHHHHHHHHHHHHHHHHH-TCCSCCCCHHHHHH---TCTTTTTHHHHHHHHHSCC
T ss_pred             cCCHHhcccCCccHhhHHHHHHHHHHHHHH-hCCcccCCHHHccC---CCchHHHHHHHHHHHHHhh
Confidence            4566544     345668999999999975 99999999999975   5779999999998766433

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.2e-06  Score=62.34  Aligned_cols=51  Identities=14%  Similarity=0.351  Sum_probs=44.5

Q ss_pred             CccCCCcChhhhHHHHHHHHHHhcCCCcccCccccccCCCCCccceeeecchhhh
Q psy6952           5 FASLDQRNIYSNNELAFRTAERHLGIPALLDAEDMVEYAVPDRLSILTYLSQFYQ   59 (168)
Q Consensus         5 ~dsL~~~~~~eNl~lAF~vAE~~LGIp~lLdpED~~~~~~PDekSVmTYVs~~y~   59 (168)
                      ...+.+.+..+|.+.+++.++ .+||+..++|||+++   ++++.+++||.++|+
T Consensus        66 ~~~~~~~~~~~n~~~~l~~~~-~lgi~~~i~~eDIv~---gn~k~iL~lv~~Lfn  116 (116)
T d1aoaa2          66 MSGFNETDDLKRAESMLQQAD-KLGCRQFVTPADVVS---GNPKLNLAFVANLFN  116 (116)
T ss_dssp             CTTTTCSSHHHHHHHHHHHHT-TTTCCCSCCHHHHHT---TCHHHHHHHHHHHHC
T ss_pred             cCcchHHHHHHHHHHHHHHHH-HhCCCcCcCHHhCcC---CCHHHHHHHHHHHhC
Confidence            445667789999999999885 699999999999964   899999999999985

>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0061  Score=43.74  Aligned_cols=30  Identities=20%  Similarity=0.263  Sum_probs=26.1

Q ss_pred             HHHHHHHhhHHhHHHHHHHHHHhhhhhhhhhh
Q psy6952          88 QVHLIRSAGQLNLSSLLISMIAEGSAWSAYTV  119 (168)
Q Consensus        88 ~~~lm~~~~y~~l~s~Ll~wi~~~~~wl~~~~  119 (168)
                      +++++.  +|+++|+.|++||+.++.+|+++.
T Consensus         8 ~e~l~~--eY~~~As~Ll~Wi~~~~~~L~dr~   37 (125)
T d1hcia1           8 NERLME--EYERLASELLEWIRRTIPWLENRT   37 (125)
T ss_dssp             HHHHHH--HHHHHHHHHHTHHHHHHHHTTCCC
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHhCCC
Confidence            466666  789999999999999999999865

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Actin binding domain of plectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.92  E-value=0.25  Score=34.14  Aligned_cols=52  Identities=12%  Similarity=0.129  Sum_probs=42.1

Q ss_pred             CCcChhhhHHHHHHHHHHhcCCCcc-cCccccccCCCCCccceeeecchhhhhhhcc
Q psy6952           9 DQRNIYSNNELAFRTAERHLGIPAL-LDAEDMVEYAVPDRLSILTYLSQFYQVFVNQ   64 (168)
Q Consensus         9 ~~~~~~eNl~lAF~vAE~~LGIp~l-LdpED~~~~~~PDekSVmTYVs~~y~~f~~~   64 (168)
                      .+....+|++.|++.++ ..|+... .+++|+++   .+.+.++..+-+++.+|.-.
T Consensus        62 ~~~~k~eN~~~aL~~~~-~~~~~l~~i~~~dI~~---Gn~k~iL~llw~L~~~~~i~  114 (120)
T d1sh5a1          62 MRFHKLQNVQIALDYLR-HRQVKLVNIRNDDIAD---GNPKLTLGLIWTIILHFQIS  114 (120)
T ss_dssp             SHHHHHHHHHHHHHHHH-HTTCCCCSCCHHHHHT---TCHHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHHHHH-HhcccccCCcHHhhcc---CcHHHHHHHHHHHHHHhchh
Confidence            34566899999999986 4688755 89999965   58899999999999888743