Psyllid ID: psy6968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MKMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSAPY
Secondary Structure (PSIPRED)
cccccccccccccccEEEEcccccEEEEEEccccccHHHHHHHHHHcccccccccccccEEEEEEEccEEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHcccccccEcccccccEEEEEEEcccccccHHHHHHccccEEEccccccccEEEEEEEccccEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mkmssnsdtfvtsheftlardvpdlrlgIVGSLASGKSALVHRFMTgaflqeespeggrfkkevVIDGHSHLLLirdegvppelqppnpsapy
Flexible Loop (DISEMBL)
mkmssnsdtfvtsheftlardvpdLRLGIVGSLASGKSALVHRFMTGAflqeespeggrFKKEVVIDGHSHLLlirdegvppelqppnpsapy
Low Complexity Region (SEG)
MKMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSAPY
Disordered region (IsUnstruct)
**********VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ*******RFKKEVVIDGHSHLLLIR*****************
Disordered Region (DISOPRED)
*********FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE******RFKKEVVIDGHSHLLLIRDEGV*************
Disordered Region (DISEMBL)
************SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSAPY
Disordered Region (DISPRO)
****SNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSAPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q8VHH5	910	Arf-GAP with GTPase, ANK	yes	N/A	0.838	0.085	0.730	2e-30
Q96P47	875	Arf-GAP with GTPase, ANK	yes	N/A	0.838	0.089	0.730	3e-30
Q6NRL1	864	Arf-GAP with GTPase, ANK	N/A	N/A	0.838	0.090	0.730	4e-30
Q9UPQ3	857	Arf-GAP with GTPase, ANK	no	N/A	0.838	0.091	0.730	6e-29
Q8BXK8	857	Arf-GAP with GTPase, ANK	no	N/A	0.838	0.091	0.730	7e-29
Q9NGC3	995	Centaurin-gamma-1A OS=Dro	no	N/A	0.838	0.078	0.756	2e-28
Q8CGU4	1186	Arf-GAP with GTPase, ANK	yes	N/A	0.903	0.070	0.440	4e-18
Q3UHD9	1186	Arf-GAP with GTPase, ANK	no	N/A	0.903	0.070	0.428	7e-17
Q99490	1192	Arf-GAP with GTPase, ANK	no	N/A	0.903	0.070	0.416	1e-16

>sp|Q8VHH5|AGAP3_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Mus musculus GN=Agap3 PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 72/78 (92%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 110 DSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 169

Query: 68  GHSHLLLIRDEGVPPELQ 85
           G S+LLLIRDEG PPELQ
Sbjct: 170 GQSYLLLIRDEGGPPELQ 187

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.
Mus musculus (taxid: 10090)

>sp|Q96P47|AGAP3_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=AGAP3 PE=1 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 72/78 (92%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 75  DSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 134

Query: 68  GHSHLLLIRDEGVPPELQ 85
           G S+LLLIRDEG PPELQ
Sbjct: 135 GQSYLLLIRDEGGPPELQ 152

GTPase-activating protein for the ADP ribosylation factor family (Potential). GTPase which may be involved in the degradation of expanded polyglutamine proteins through the ubiquitin-proteasome pathway.

Homo sapiens (taxid: 9606)

>sp|Q6NRL1|AGAP1_XENLA Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Xenopus laevis GN=agap1 PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/78 (73%), Positives = 70/78 (89%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D FV S E+TL+R VP+L++GIVG+LASGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 55  DAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 114

Query: 68  GHSHLLLIRDEGVPPELQ 85
           G S+LLLIRDEG PPE Q
Sbjct: 115 GQSYLLLIRDEGGPPEAQ 132

GTPase-activating protein. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Xenopus laevis (taxid: 8355)

>sp|Q9UPQ3|AGAP1_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Homo sapiens GN=AGAP1 PE=1 SV=4

 Score =  125 bits (315), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 57/78 (73%), Positives = 70/78 (89%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D FV S E+TL+R VP+L++GIVG+LASGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 55  DAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 114

Query: 68  GHSHLLLIRDEGVPPELQ 85
           G S+LLLIRDEG PPE Q
Sbjct: 115 GQSYLLLIRDEGGPPEAQ 132

GTPase-activating protein for ARF1 and, to a lesser extent, ARF5. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Homo sapiens (taxid: 9606)

>sp|Q8BXK8|AGAP1_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Agap1 PE=2 SV=1

 Score =  125 bits (314), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/78 (73%), Positives = 70/78 (89%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D FV S E+TL+R VP+L++GIVG+LASGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 55  DAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 114

Query: 68  GHSHLLLIRDEGVPPELQ 85
           G S+LLLIRDEG PPE Q
Sbjct: 115 GQSYLLLIRDEGGPPEAQ 132

GTPase-activating protein for ARF1 and, to a lesser extent, ARF5. Directly and specifically regulates the adapter protein 3 (AP-3)-dependent trafficking of proteins in the endosomal-lysosomal system.

Mus musculus (taxid: 10090)

>sp|Q9NGC3|CEG1A_DROME Centaurin-gamma-1A OS=Drosophila melanogaster GN=cenG1A PE=2 SV=2

 Score =  124 bits (310), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/78 (75%), Positives = 70/78 (89%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D+FV S E+T++R VPDLRLGIVGSL SGKSALVHR++TG+++QEESPEGGRFKKEV ID
Sbjct: 126 DSFVNSQEWTISRSVPDLRLGIVGSLNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFID 185

Query: 68  GHSHLLLIRDEGVPPELQ 85
           G S+LLLIRDEG  PE+Q
Sbjct: 186 GQSYLLLIRDEGGAPEMQ 203

GTPase-activating protein for the ADP ribosylation factor family.

Drosophila melanogaster (taxid: 7227)

>sp|Q8CGU4|AGAP2_RAT Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Agap2 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 37/84 (44%), Positives = 63/84 (75%)

Query: 2   KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK 61
           ++ ++    V S E+TL+R +P+LRLG++G + SGKS+L+HRF+TG++   E PE  ++K
Sbjct: 378 ELRASPKAVVNSQEWTLSRSIPELRLGVLGDVRSGKSSLIHRFLTGSYQVLEKPESEQYK 437

Query: 62  KEVVIDGHSHLLLIRDEGVPPELQ 85
           KE+++DG +HL+LIR+E   P+ +
Sbjct: 438 KEMLVDGQTHLVLIREEAGAPDAK 461

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. Aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase.

Rattus norvegicus (taxid: 10116)

>sp|Q3UHD9|AGAP2_MOUSE Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Agap2 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 62/84 (73%)

Query: 2   KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK 61
           ++ ++    V S E+TL+R +P+LRLG++G + SGKS+L+HRF+TG++   E  E  ++K
Sbjct: 378 ELRTSPKAVVNSQEWTLSRSIPELRLGVLGDVRSGKSSLIHRFLTGSYQVLEKIESEQYK 437

Query: 62  KEVVIDGHSHLLLIRDEGVPPELQ 85
           KE+++DG +HL+LIR+E   P+ +
Sbjct: 438 KEMLVDGQTHLVLIREEAGAPDAK 461

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. Aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase.

Mus musculus (taxid: 10090)

>sp|Q99490|AGAP2_HUMAN Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2 OS=Homo sapiens GN=AGAP2 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 61/84 (72%)

Query: 2   KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK 61
           ++ ++    + S E+TL+R +P+LRLG++G   SGKS+L+HRF+TG++   E  E  ++K
Sbjct: 384 ELRASPKAVINSQEWTLSRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK 443

Query: 62  KEVVIDGHSHLLLIRDEGVPPELQ 85
           KE+++DG +HL+LIR+E   P+ +
Sbjct: 444 KEMLVDGQTHLVLIREEAGAPDAK 467

GTPase-activating protein (GAP) for ARF1 and ARF5, which also shows strong GTPase activity. Isoform 1 participates in the prevention of neuronal apoptosis by enhancing PI3 kinase activity. It aids the coupling of metabotropic glutamate receptor 1 (GRM1) to cytoplasmic PI3 kinase by interacting with Homer scaffolding proteins, and also seems to mediate anti-apoptotic effects of NGF by activating nuclear PI3 kinase. Isoform 2 does not stimulate PI3 kinase but may protect cells from apoptosis by stimulating Akt. It also regulates the adapter protein 1 (AP-1)-dependent trafficking of proteins in the endosomal system. It seems to be oncogenic. It is overexpressed in cancer cells, prevents apoptosis and promotes cancer cell invasion.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
427780055	895	Putative gtpase-activating protein centa	0.838	0.087	0.782	2e-31
427783793	867	Putative gtpase-activating protein centa	0.838	0.089	0.782	2e-31
427783795	867	Putative gtpase-activating protein centa	0.838	0.089	0.782	2e-31
328715496	157	PREDICTED: arf-GAP with GTPase, ANK repe	0.860	0.509	0.762	2e-30
242021832	859	Centaurin-gamma, putative [Pediculus hum	0.838	0.090	0.769	1e-29
195472743	927	GE18693 [Drosophila yakuba] gi|194174760	0.849	0.085	0.759	2e-29
7650487	1006	Centaurin Gamma 1A [Drosophila melanogas	0.849	0.078	0.759	2e-29
194860329	927	GG23894 [Drosophila erecta] gi|190661427	0.849	0.085	0.759	2e-29
355667453	780	ArfGAP with GTPase domain, ankyrin repea	0.838	0.1	0.743	2e-29
270001122	570	hypothetical protein TcasGA2_TC011430 [T	0.849	0.138	0.759	3e-29

>gi|427780055|gb|JAA55479.1| Putative gtpase-activating protein centaurin gamma [Rhipicephalus pulchellus]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 73/78 (93%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D+FV S E+TL+R VPD+RLGIVGSL SGKSALVHR++TG+++Q+ESPEGGRFKKE+V+D
Sbjct: 57  DSFVNSQEWTLSRSVPDIRLGIVGSLTSGKSALVHRYLTGSYMQDESPEGGRFKKEIVVD 116

Query: 68  GHSHLLLIRDEGVPPELQ 85
           GHSHLLLIRDEG PPELQ
Sbjct: 117 GHSHLLLIRDEGGPPELQ 134

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783793|gb|JAA57348.1| Putative gtpase-activating protein centaurin gamma [Rhipicephalus pulchellus]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 73/78 (93%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D+FV S E+TL+R VPD+RLGIVGSL SGKSALVHR++TG+++Q+ESPEGGRFKKE+V+D
Sbjct: 57  DSFVNSQEWTLSRSVPDIRLGIVGSLTSGKSALVHRYLTGSYMQDESPEGGRFKKEIVVD 116

Query: 68  GHSHLLLIRDEGVPPELQ 85
           GHSHLLLIRDEG PPELQ
Sbjct: 117 GHSHLLLIRDEGGPPELQ 134

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783795|gb|JAA57349.1| Putative gtpase-activating protein centaurin gamma [Rhipicephalus pulchellus]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/78 (78%), Positives = 73/78 (93%)

Query: 8   DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
           D+FV S E+TL+R VPD+RLGIVGSL SGKSALVHR++TG+++Q+ESPEGGRFKKE+V+D
Sbjct: 57  DSFVNSQEWTLSRSVPDIRLGIVGSLTSGKSALVHRYLTGSYMQDESPEGGRFKKEIVVD 116

Query: 68  GHSHLLLIRDEGVPPELQ 85
           GHSHLLLIRDEG PPELQ
Sbjct: 117 GHSHLLLIRDEGGPPELQ 134

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328715496|ref|XP_003245645.1| PREDICTED: arf-GAP with GTPase, ANK repeat and PH domain-containing protein 2-like [Acyrthosiphon pisum]

 Score =  135 bits (341), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/80 (76%), Positives = 72/80 (90%)

Query: 6   NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVV 65
            SD+FV S E+TL+R VPDLRLGIVGSL+SGKSALVHR++TG+++QEESPEGGRFKKE+ 
Sbjct: 62  KSDSFVNSQEWTLSRSVPDLRLGIVGSLSSGKSALVHRYLTGSYMQEESPEGGRFKKEIS 121

Query: 66  IDGHSHLLLIRDEGVPPELQ 85
           +DGHSHLLLIRDEG  PE Q
Sbjct: 122 VDGHSHLLLIRDEGGSPESQ 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021832|ref|XP_002431347.1| Centaurin-gamma, putative [Pediculus humanus corporis] gi|212516615|gb|EEB18609.1| Centaurin-gamma, putative [Pediculus humanus corporis]

 Score =  134 bits (336), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/78 (76%), Positives = 73/78 (93%)

Query: 8  DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
          D+FV S E+TL+R VPDLRLGIVGSL+SGKSALVHR++TG+++QEESPEGGRFKKE+++D
Sbjct: 14 DSFVNSQEWTLSRGVPDLRLGIVGSLSSGKSALVHRYLTGSYMQEESPEGGRFKKEILVD 73

Query: 68 GHSHLLLIRDEGVPPELQ 85
          G S+LLLIRDEG PPELQ
Sbjct: 74 GQSYLLLIRDEGGPPELQ 91

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472743|ref|XP_002088659.1| GE18693 [Drosophila yakuba] gi|194174760|gb|EDW88371.1| GE18693 [Drosophila yakuba]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 71/79 (89%)

Query: 7   SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVI 66
           SD+FV S E+T++R VPDLRLGIVGSL SGKSALVHR++TG+++QEESPEGGRFKKEV I
Sbjct: 57  SDSFVNSQEWTISRSVPDLRLGIVGSLNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFI 116

Query: 67  DGHSHLLLIRDEGVPPELQ 85
           DG S+LLLIRDEG  PE+Q
Sbjct: 117 DGQSYLLLIRDEGGAPEMQ 135

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|7650487|gb|AAF66064.1|AF254741_1 Centaurin Gamma 1A [Drosophila melanogaster]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 71/79 (89%)

Query: 7   SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVI 66
           SD+FV S E+T++R VPDLRLGIVGSL SGKSALVHR++TG+++QEESPEGGRFKKEV I
Sbjct: 57  SDSFVNSQEWTISRSVPDLRLGIVGSLNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFI 116

Query: 67  DGHSHLLLIRDEGVPPELQ 85
           DG S+LLLIRDEG  PE+Q
Sbjct: 117 DGQSYLLLIRDEGGAPEMQ 135

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194860329|ref|XP_001969560.1| GG23894 [Drosophila erecta] gi|190661427|gb|EDV58619.1| GG23894 [Drosophila erecta]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 71/79 (89%)

Query: 7   SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVI 66
           SD+FV S E+T++R VPDLRLGIVGSL SGKSALVHR++TG+++QEESPEGGRFKKEV I
Sbjct: 57  SDSFVNSQEWTISRSVPDLRLGIVGSLNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFI 116

Query: 67  DGHSHLLLIRDEGVPPELQ 85
           DG S+LLLIRDEG  PE+Q
Sbjct: 117 DGQSYLLLIRDEGGAPEMQ 135

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|355667453|gb|AER93871.1| ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 [Mustela putorius furo]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/78 (74%), Positives = 71/78 (91%)

Query: 8  DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
          D FV S E+TL+R VP+L++GIVG+LASGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 1  DAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 60

Query: 68 GHSHLLLIRDEGVPPELQ 85
          G S+LLLIRDEG PPELQ
Sbjct: 61 GQSYLLLIRDEGGPPELQ 78

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270001122|gb|EEZ97569.1| hypothetical protein TcasGA2_TC011430 [Tribolium castaneum]

 Score =  132 bits (332), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/79 (75%), Positives = 73/79 (92%)

Query: 7   SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVI 66
           SD+FV S E+TL+R VPDLRLGIVGSL+SGKSALVHR++TG+++QEESPEGGRFKKE+++
Sbjct: 72  SDSFVNSQEWTLSRTVPDLRLGIVGSLSSGKSALVHRYLTGSYMQEESPEGGRFKKEILV 131

Query: 67  DGHSHLLLIRDEGVPPELQ 85
           D  S+LLLIRDEG PPELQ
Sbjct: 132 DNQSYLLLIRDEGGPPELQ 150

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
FB|FBgn0028509	995	CenG1A "Centaurin gamma 1A" [D	0.838	0.078	0.756	3.5e-28
UNIPROTKB|C9J975	343	AGAP3 "Arf-GAP with GTPase, AN	0.870	0.236	0.716	5e-28
UNIPROTKB|E9PAL8	396	AGAP3 "Arf-GAP with GTPase, AN	0.870	0.204	0.716	5e-28
UNIPROTKB|H7C4F1	194	AGAP3 "Arf-GAP with GTPase, AN	0.838	0.402	0.730	6.4e-28
UNIPROTKB|E1BB02	898	AGAP3 "Uncharacterized protein	0.870	0.090	0.716	1e-27
UNIPROTKB|E7ESL9	576	AGAP3 "Arf-GAP with GTPase, AN	0.849	0.137	0.734	1.1e-27
UNIPROTKB|I3L794	863	AGAP3 "Uncharacterized protein	0.870	0.093	0.716	1.1e-27
UNIPROTKB|I3LME1	901	AGAP3 "Uncharacterized protein	0.870	0.089	0.716	1.3e-27
UNIPROTKB|C9J8Z2	117	AGAP1 "Arf-GAP with GTPase, AN	0.838	0.666	0.730	1.3e-27
UNIPROTKB|I3LTX4	235	I3LTX4 "Uncharacterized protei	0.838	0.331	0.730	1.3e-27

FB|FBgn0028509 CenG1A "Centaurin gamma 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 309 (113.8 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
 Identities = 59/78 (75%), Positives = 70/78 (89%)

Query:     8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
             D+FV S E+T++R VPDLRLGIVGSL SGKSALVHR++TG+++QEESPEGGRFKKEV ID
Sbjct:   126 DSFVNSQEWTISRSVPDLRLGIVGSLNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFID 185

Query:    68 GHSHLLLIRDEGVPPELQ 85
             G S+LLLIRDEG  PE+Q
Sbjct:   186 GQSYLLLIRDEGGAPEMQ 203

GO:0008060 "ARF GTPase activator activity" evidence=ISS;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|C9J975 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/81 (71%), Positives = 73/81 (90%)

Query:     5 SNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEV 64
             S  D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+
Sbjct:   108 SIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEI 167

Query:    65 VIDGHSHLLLIRDEGVPPELQ 85
             V+DG S+LLLIRDEG PPELQ
Sbjct:   168 VVDGQSYLLLIRDEGGPPELQ 188

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E9PAL8 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/81 (71%), Positives = 73/81 (90%)

Query:     5 SNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEV 64
             S  D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+
Sbjct:   108 SIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEI 167

Query:    65 VIDGHSHLLLIRDEGVPPELQ 85
             V+DG S+LLLIRDEG PPELQ
Sbjct:   168 VVDGQSYLLLIRDEGGPPELQ 188

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|H7C4F1 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 57/78 (73%), Positives = 72/78 (92%)

Query:     8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
             D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct:    47 DSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 106

Query:    68 GHSHLLLIRDEGVPPELQ 85
             G S+LLLIRDEG PPELQ
Sbjct:   107 GQSYLLLIRDEGGPPELQ 124

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BB02 AGAP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 313 (115.2 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
 Identities = 58/81 (71%), Positives = 73/81 (90%)

Query:     5 SNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEV 64
             S  D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+
Sbjct:   106 SIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEI 165

Query:    65 VIDGHSHLLLIRDEGVPPELQ 85
             V+DG S+LLLIRDEG PPELQ
Sbjct:   166 VVDGQSYLLLIRDEGGPPELQ 186

GO:0071944 "cell periphery" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E7ESL9 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 316 (116.3 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 58/79 (73%), Positives = 73/79 (92%)

Query:     7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVI 66
             SD+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+
Sbjct:   290 SDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVV 349

Query:    67 DGHSHLLLIRDEGVPPELQ 85
             DG S+LLLIRDEG PPELQ
Sbjct:   350 DGQSYLLLIRDEGGPPELQ 368

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|I3L794 AGAP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
 Identities = 58/81 (71%), Positives = 73/81 (90%)

Query:     5 SNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEV 64
             S  D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+
Sbjct:    72 SIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEI 131

Query:    65 VIDGHSHLLLIRDEGVPPELQ 85
             V+DG S+LLLIRDEG PPELQ
Sbjct:   132 VVDGQSYLLLIRDEGGPPELQ 152

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|I3LME1 AGAP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 313 (115.2 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
 Identities = 58/81 (71%), Positives = 73/81 (90%)

Query:     5 SNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEV 64
             S  D+FV S E+TL+R VP+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+
Sbjct:   108 SIEDSFVNSQEWTLSRSVPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEI 167

Query:    65 VIDGHSHLLLIRDEGVPPELQ 85
             V+DG S+LLLIRDEG PPELQ
Sbjct:   168 VVDGQSYLLLIRDEGGPPELQ 188

GO:0071944 "cell periphery" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0034614 "cellular response to reactive oxygen species" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|C9J8Z2 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 57/78 (73%), Positives = 70/78 (89%)

Query:     8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
             D FV S E+TL+R VP+L++GIVG+LASGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct:     2 DAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 61

Query:    68 GHSHLLLIRDEGVPPELQ 85
             G S+LLLIRDEG PPE Q
Sbjct:    62 GQSYLLLIRDEGGPPEAQ 79

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|I3LTX4 I3LTX4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 57/78 (73%), Positives = 70/78 (89%)

Query:     8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
             D FV S E+TL+R VP+L++GIVG+LASGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct:    55 DAFVNSQEWTLSRSVPELKVGIVGNLASGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 114

Query:    68 GHSHLLLIRDEGVPPELQ 85
             G S+LLLIRDEG PPE Q
Sbjct:   115 GQSYLLLIRDEGGPPEAQ 132

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96P47	AGAP3_HUMAN	No assigned EC number	0.7307	0.8387	0.0891	yes	N/A
Q8VHH5	AGAP3_MOUSE	No assigned EC number	0.7307	0.8387	0.0857	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	1e-35
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-09
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	2e-06
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	3e-06
pfam00071	162	pfam00071, Ras, Ras family	6e-05
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-04
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-04
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	2e-04
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-04
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	6e-04
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	6e-04
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	8e-04
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	0.002
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	0.004

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score =  117 bits (296), Expect = 1e-35
 Identities = 45/61 (73%), Positives = 55/61 (90%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL 84
          L+LGIVG+L SGKSALVHR++TG+++Q ESPEGGRFKKEV++DG SHLLLIRDEG  P+ 
Sbjct: 1  LKLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDA 60

Query: 85 Q 85
          Q
Sbjct: 61 Q 61

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 48.6 bits (116), Expect = 6e-09
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQE--ESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83
          ++ ++G   SGKS+L+ + + G F  E  E          + +DG + LL I D G   E
Sbjct: 1  KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 84 LQ 85
          L+
Sbjct: 61 LK 62

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRDEGVPP 82
          +R+ ++G+   GK+A+V +F+   F +E  P   R  ++  VV+ G  + L I D  VP 
Sbjct: 1  VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILD--VPN 58

Query: 83 ELQPPNPSAP 92
           +Q    +A 
Sbjct: 59 -MQRYPGTAG 67

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 20/53 (37%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRD 77
          +L ++G+   GKSAL  RF++G F++E  P     ++K++V+DG ++ L I D
Sbjct: 1  KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILD 53

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 38.6 bits (91), Expect = 6e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFK-KEVVIDGHSHLLLIRD 77
          +VG    GKS+L+ RF    F +E     G  F  K + +DG +  L I D
Sbjct: 4  LVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWD 54

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSHLLLIRD 77
           + +L ++G    GKSAL  +F+ G F+ E  P  E   ++K++ IDG   LL I D
Sbjct: 1  REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDS-YRKQIEIDGEVCLLDILD 56

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSHLLLIRD 77
          +L ++GS   GKSAL  +F+ G F+ +  P  E   ++K++ IDG   LL I D
Sbjct: 2  KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILD 54

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGGRF-KKEVVIDGHSHLLLIRD 77
          ++GS   GKSAL  +F++G F+++  P    F +KE+ +D    +L I D
Sbjct: 6  VLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILD 55

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 27 LGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSHLLLIRD 77
          + ++G+   GKSAL  RF+T  F+ E E      + ++V IDG    L I+D
Sbjct: 2  IAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQD 53

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFK-KEVVIDGHSHLLLIRD 77
           ++ ++G    GK++L+ RF+   F +      G  FK K + +DG    L I D
Sbjct: 1  FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWD 55

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
          + +L +VG+   GKSAL  + +   F+ E  P     ++K+VVIDG + LL I D
Sbjct: 1  EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 55

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
          + +L ++GS   GKSAL  +F+ G F+++  P     ++K+V +DG   +L I D
Sbjct: 1  EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILD 55

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPP 82
           ++ ++G    GK+ L++R +   F +   P  G     K +     +  L + D     
Sbjct: 6  FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65

Query: 83 ELQP 86
          E + 
Sbjct: 66 EYRS 69

Length = 219

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          D R+ + G+   GKS+LV RF+ G F +   P
Sbjct: 1  DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIP 32

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
          ++G  + GKS++V RF+   F + +    G     + V +D  +    I D
Sbjct: 6  LLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWD 56

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG0084|consensus	205		99.88
KOG0094|consensus	221		99.86
KOG0092|consensus	200		99.86
KOG0080|consensus	209		99.84
KOG0394|consensus	210		99.83
KOG0098|consensus	216		99.81
KOG0095|consensus	213		99.8
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.8
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.79
KOG0078|consensus	207		99.79
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.79
KOG0393|consensus	198		99.79
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.78
KOG0087|consensus	222		99.77
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.76
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.76
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.76
KOG0086|consensus	214		99.74
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.74
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.73
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.72
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.72
KOG0079|consensus	198		99.72
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.72
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.71
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.7
PTZ00369	189	Ras-like protein; Provisional	99.7
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.7
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.7
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.7
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.69
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.69
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.68
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.67
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.67
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.66
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.66
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.65
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.65
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.65
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.65
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.65
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.65
KOG0097|consensus	215		99.64
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.64
PLN00023	334	GTP-binding protein; Provisional	99.64
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.64
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.64
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.64
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.64
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.63
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.63
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.63
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.62
KOG0091|consensus	213		99.62
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.62
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.62
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.61
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.61
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.61
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.61
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.61
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.6
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.6
KOG0088|consensus	218		99.59
KOG0395|consensus	196		99.59
PLN03110	216	Rab GTPase; Provisional	99.59
COG1100	219	GTPase SAR1 and related small G proteins [General	99.58
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.58
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.58
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.57
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.57
KOG0093|consensus	193		99.57
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.57
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.56
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.56
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.56
PLN03108	210	Rab family protein; Provisional	99.55
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.55
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.55
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.55
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.55
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.55
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.55
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.54
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.54
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.53
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.53
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.52
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.52
KOG0083|consensus	192		99.52
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.52
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.51
KOG0081|consensus	219		99.5
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.5
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.49
PLN03118	211	Rab family protein; Provisional	99.49
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.49
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.49
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.48
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.47
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.46
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.44
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.43
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.43
PLN00223	181	ADP-ribosylation factor; Provisional	99.42
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.42
PTZ00133	182	ADP-ribosylation factor; Provisional	99.42
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.42
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.41
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.41
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.38
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.36
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.35
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.34
KOG1673|consensus	205		99.33
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.31
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.3
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.29
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.28
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.28
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.26
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.25
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.23
KOG4252|consensus	246		99.23
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.22
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.22
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.22
KOG0096|consensus	216		99.21
KOG0070|consensus	181		99.16
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.15
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.13
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.12
KOG0073|consensus	185		99.1
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.08
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.07
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.07
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.06
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.05
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.05
PRK04213	201	GTP-binding protein; Provisional	99.04
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.04
PRK15494	339	era GTPase Era; Provisional	99.03
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.02
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.0
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.98
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	98.98
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.97
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.96
KOG4423|consensus	229		98.95
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.95
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.95
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.93
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.93
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.93
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.93
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.92
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.92
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.92
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.92
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.92
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.92
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.92
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.92
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.92
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.91
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.91
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.91
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.91
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.9
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.9
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.9
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.9
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.9
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.9
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.89
PRK10908	222	cell division protein FtsE; Provisional	98.89
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.89
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.89
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.89
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.89
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.89
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.89
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.88
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.88
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.88
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.88
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.88
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.88
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.88
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.88
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.88
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.87
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.87
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.87
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.87
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.87
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.87
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.87
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.87
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.87
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.86
PRK00093	435	GTP-binding protein Der; Reviewed	98.86
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.86
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.86
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.86
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	98.86
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.86
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.86
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.86
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.85
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.85
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.85
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.85
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.85
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.85
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.85
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.84
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	98.84
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.84
KOG0058|consensus	716		98.84
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.84
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.84
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.84
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.84
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.84
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.84
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.83
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.83
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.83
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.83
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.83
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	98.83
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.83
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.83
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.83
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.83
cd03246	173	ABCC_Protease_Secretion This family represents the	98.83
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.83
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.82
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.82
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.82
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.82
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.82
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
KOG0071|consensus	180		98.82
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.82
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.82
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.81
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.81
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.81
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.81
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.81
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.81
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.81
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.81
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.81
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.81
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.81
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.8
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.8
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.8
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	98.8
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.8
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.8
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.8
KOG0705|consensus	749		98.8
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.8
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.8
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.8
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.8
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.79
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.79
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.79
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.79
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.79
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.79
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.79
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.79
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.78
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.78
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.78
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.78
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.78
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.78
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.78
PRK03003	472	GTP-binding protein Der; Reviewed	98.78
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.78
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.77
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.77
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.77
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.77
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.77
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.77
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.77
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.77
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.76
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.76
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.76
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.76
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.76
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.76
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.76
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.76
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.76
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.76
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.75
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.75
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.75
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	98.75
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.75
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.75
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.75
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.74
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.74
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.74
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.74
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.74
KOG0074|consensus	185		98.74
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.74
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.74
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.74
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.73
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.73
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.73
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.73
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.73
COG4987	573	CydC ABC-type transport system involved in cytochr	98.73
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.73
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.73
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.73
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.72
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.72
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.72
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.72
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.72
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.72
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.72
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.72
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.72
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.72
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.71
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.71
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.71
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.71
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.7
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.7
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.7
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.7
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.7
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.7
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.7
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.69
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.69
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.69
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.69
KOG0057|consensus	591		98.69
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.69
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.69
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.69
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.69
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.69
PRK03003	472	GTP-binding protein Der; Reviewed	98.68
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.68
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.68
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.68
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.68
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.68
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.68
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.68
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.68
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.67
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.67
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.67
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.67
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.67
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.67
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.67
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.67
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.66
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.66
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.66
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.66
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.66
KOG0055|consensus	1228		98.66
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.66
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.66
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.66
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.66
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.65
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.65
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.65
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	98.65
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	98.65
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.65
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.65
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.65
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.64
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.64
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.64
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.64
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.64
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.64
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.64
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.64
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.63
PRK11147	635	ABC transporter ATPase component; Reviewed	98.63
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.63
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.63
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.63
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.63
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.63
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.61
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.61
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.61
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.61
KOG0055|consensus	1228		98.61
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.61
PRK10938	490	putative molybdenum transport ATP-binding protein	98.61
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.61
PLN03232	1495	ABC transporter C family member; Provisional	98.61
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.6
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.6
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.6
PLN03130	1622	ABC transporter C family member; Provisional	98.6
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.6
COG4559	259	ABC-type hemin transport system, ATPase component	98.6
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.59
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.59
cd01881	176	Obg_like The Obg-like subfamily consists of five w	98.59
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.59
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.59
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.59
CHL00189	742	infB translation initiation factor 2; Provisional	98.58
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.58
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.58
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.57
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.57
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.57
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.57
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.57
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.57
PRK11147	635	ABC transporter ATPase component; Reviewed	98.56
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.56
COG1123	539	ATPase components of various ABC-type transport sy	98.56
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.56
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.55
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.55
PTZ00243	1560	ABC transporter; Provisional	98.55
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.54
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.54
cd00881	189	GTP_translation_factor GTP translation factor fami	98.53
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.53
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.52
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.52
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.52
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.51
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.51
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.51
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.51
KOG0056|consensus	790		98.5
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.5
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.49
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.49
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.49
COG4988	559	CydD ABC-type transport system involved in cytochr	98.49
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.49
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.48
PRK10938	490	putative molybdenum transport ATP-binding protein	98.48
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.48
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.47
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.46
KOG0075|consensus	186		98.45
PLN03211	659	ABC transporter G-25; Provisional	98.45
PRK10535	648	macrolide transporter ATP-binding /permease protei	98.45

>KOG0084|consensus

Probab=99.88  E-value=7.6e-23  Score=130.86  Aligned_cols=69  Identities=23%  Similarity=0.327  Sum_probs=62.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +.+|++|+|++|||||+|+.||..+.|.+.|..|.| +| .+++.++|+.++++||||+|||||+++..++
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~sy   78 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSY   78 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhh
Confidence            448999999999999999999999999999999966 57 6899999999999999999999999876554

>KOG0094|consensus

Probab=99.86  E-value=4.7e-22  Score=127.34  Aligned_cols=70  Identities=23%  Similarity=0.339  Sum_probs=64.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      ..+|++++|+.+||||||+.||+.+.|...|.+|.| +| ++++.+.|..+.|++|||+|||||+++.|++.
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~   92 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   92 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhc
Confidence            348999999999999999999999999999999965 67 78999999999999999999999999988753

>KOG0092|consensus

Probab=99.86  E-value=1.4e-21  Score=124.69  Aligned_cols=70  Identities=26%  Similarity=0.397  Sum_probs=63.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      .++|++++|+.+||||||+.||..+.|.+...||.| .| .+.+.+++..++++||||+|||+|.++.|.+|
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYy   75 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYY   75 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCccccccccccee
Confidence            358999999999999999999999999998889944 56 78999999999999999999999999988764

>KOG0080|consensus

Probab=99.84  E-value=6.7e-21  Score=119.26  Aligned_cols=69  Identities=26%  Similarity=0.389  Sum_probs=62.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      .+|++++|++|||||+|+.||..+.|.++.+.|.| +| .+.+.++|+.+++-||||+|||+|+.+.|+++
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyy   81 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYY   81 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHh
Confidence            48999999999999999999999999998777655 68 68899999999999999999999999988764

>KOG0394|consensus

Probab=99.83  E-value=8.9e-21  Score=120.57  Aligned_cols=68  Identities=26%  Similarity=0.351  Sum_probs=62.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..+||+++|++|||||||+++|..+.|...|..|. .+| .+++.+|++.+.++||||+|||||+++.-.
T Consensus         8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~a   77 (210)
T KOG0394|consen    8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVA   77 (210)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccc
Confidence            34899999999999999999999999999999994 467 799999999999999999999999998643

>KOG0098|consensus

Probab=99.81  E-value=1.8e-20  Score=119.42  Aligned_cols=70  Identities=27%  Similarity=0.301  Sum_probs=63.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      +.+|++++|+.|||||+|+.||+.+.|.+-++.|.| +| .+.+.+|+++|+++||||+|||.|+++++++|
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY   76 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY   76 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence            348999999999999999999999999999988855 68 78899999999999999999999998876653

>KOG0095|consensus

Probab=99.80  E-value=3e-20  Score=115.40  Aligned_cols=67  Identities=28%  Similarity=0.428  Sum_probs=60.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +|+++||..|||||+|+.||..+.|++-...|.| .| .+++.++|..++++||||+|||+|+++..++
T Consensus         8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsy   76 (213)
T KOG0095|consen    8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSY   76 (213)
T ss_pred             EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHH
Confidence            8999999999999999999999999887767754 57 7999999999999999999999999886654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.80  E-value=2.8e-19  Score=114.33  Aligned_cols=69  Identities=23%  Similarity=0.321  Sum_probs=61.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      ..+|++++|+.|||||||+.||+.+.|.++|.||.+ .|.+.+.+++..+.+++|||+||++|..+++..
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~   73 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLS   73 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhh
Confidence            348999999999999999999999999999999954 567788899999999999999999998887643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=99.79  E-value=3.6e-19  Score=114.16  Aligned_cols=68  Identities=24%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .+|++++|+.|||||||+.||+.+.|.++|.||.+ .|.+.+.+++..+.+++|||+||++|+.+++..
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~   71 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLS   71 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhh
Confidence            38999999999999999999999999999999954 566667889999999999999999999887643

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0078|consensus

Probab=99.79  E-value=7.7e-20  Score=118.05  Aligned_cols=69  Identities=23%  Similarity=0.301  Sum_probs=62.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      .+|++++||+|||||+++.||..+.|...+..|.| +| .++++++|+.+.+++|||+|||+|+.+.++++
T Consensus        12 ~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy   82 (207)
T KOG0078|consen   12 LFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY   82 (207)
T ss_pred             EEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence            48999999999999999999999999998888855 67 68999999999999999999999998876654

>cd04133 Rop_like Rop subfamily

Probab=99.79  E-value=1.1e-18  Score=111.20  Aligned_cols=66  Identities=21%  Similarity=0.320  Sum_probs=60.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||+|+.||+.+.|.++|.||. +.|.+.+.+++..+++++|||+|+++|+.+++.
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~   68 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPL   68 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchh
Confidence            699999999999999999999999999999995 456677889999999999999999999988765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0393|consensus

Probab=99.79  E-value=6.7e-20  Score=118.20  Aligned_cols=69  Identities=25%  Similarity=0.343  Sum_probs=64.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-cceeEEEEEEC-CeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVID-GHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      ..|+++|||.+||||+|+..|..+.|+++|.|| .++|...+.++ |+.+.+.+|||+|||+|..+||..+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY   74 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSY   74 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCC
Confidence            489999999999999999999999999999999 77898899995 9999999999999999999998754

>cd04131 Rnd Rnd subfamily

Probab=99.78  E-value=1.1e-18  Score=111.05  Aligned_cols=67  Identities=21%  Similarity=0.339  Sum_probs=60.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +|++++|++|||||||+.+|+.+.|+.+|.||. ..|.+.+.+++..+.+++|||+|+++|..+++..
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~   69 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLC   69 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhh
Confidence            799999999999999999999999999999995 4567778899999999999999999998877653

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0087|consensus

Probab=99.77  E-value=7.4e-19  Score=113.64  Aligned_cols=68  Identities=25%  Similarity=0.367  Sum_probs=61.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      -+|++++||+|||||-|+.||..+.|..+-.+|.| +| .+.+.++++.++.+||||+|||||+.+..++
T Consensus        14 lFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaY   83 (222)
T KOG0087|consen   14 LFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAY   83 (222)
T ss_pred             EEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchh
Confidence            38999999999999999999999999998888855 56 6889999999999999999999999775443

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.76  E-value=4.3e-18  Score=107.86  Aligned_cols=66  Identities=24%  Similarity=0.305  Sum_probs=59.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||||+.+|+.+.|.++|.||.+ .|...+.+++..+.+.+|||+|+++|..+++.
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   68 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL   68 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhh
Confidence            7999999999999999999999999988999954 56667788999999999999999999877654

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.76  E-value=1.9e-18  Score=113.73  Aligned_cols=67  Identities=22%  Similarity=0.286  Sum_probs=60.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .|+++||+.|||||||+.+|+.+.|+++|.||. ..|...+.+++..+.+.+|||+|+++|..+++..
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~   69 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLA   69 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHh
Confidence            799999999999999999999999999999994 4677778899999999999999999998877653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.76  E-value=2.1e-18  Score=114.14  Aligned_cols=68  Identities=16%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..+|+++||+.|||||+|+.+|+.+.|.++|.||. ..|...+.+++..+.+++|||+|+++|..+++.
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~   80 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPL   80 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHH
Confidence            34899999999999999999999999999999994 467667889999999999999999999877654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0086|consensus

Probab=99.74  E-value=6.6e-19  Score=109.76  Aligned_cols=67  Identities=27%  Similarity=0.447  Sum_probs=60.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +|++++|++|.|||+|+++|+.++|.+....|.| +| ++.+.+.++.++++||||+|||+|++..+++
T Consensus        10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsY   78 (214)
T KOG0086|consen   10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSY   78 (214)
T ss_pred             heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHH
Confidence            7999999999999999999999999988777755 67 7888999999999999999999999876554

>cd04128 Spg1 Spg1p

Probab=99.74  E-value=1.1e-17  Score=106.86  Aligned_cols=66  Identities=27%  Similarity=0.461  Sum_probs=58.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||||+.||+.+.|.++|.||.+ ++ .+.+.+++..+.+++||++|+++|..+++.
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~   68 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPL   68 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHH
Confidence            4899999999999999999999999999999954 45 578899999999999999999999877654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04120 Rab12 Rab12 subfamily

Probab=99.73  E-value=9.7e-18  Score=108.91  Aligned_cols=64  Identities=27%  Similarity=0.376  Sum_probs=57.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++++|+.|||||||+.||+.+.|.++|.||.+ .| .+.+.+++..+++++|||+||++|+.+++
T Consensus         2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~   67 (202)
T cd04120           2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITS   67 (202)
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence            689999999999999999999999999988854 45 67889999999999999999999987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.72  E-value=3.6e-17  Score=103.56  Aligned_cols=66  Identities=26%  Similarity=0.343  Sum_probs=58.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||||+.||+.+.|.++|.|+.. .|...+.+++..+.+.+|||+|+++|..+++.
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   68 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL   68 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhh
Confidence            7999999999999999999999999999999854 45667788999999999999999999887654

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.72  E-value=2.4e-17  Score=104.12  Aligned_cols=66  Identities=24%  Similarity=0.362  Sum_probs=59.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||||+.+|+.+.|.+++.|+.+ .|.+.+.+++..+.+++|||+|+++|..+++.
T Consensus         3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~   69 (172)
T cd04141           3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQ   69 (172)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHH
Confidence            7999999999999999999999999988889854 56677889999999999999999999887654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0079|consensus

Probab=99.72  E-value=1.2e-18  Score=108.03  Aligned_cols=64  Identities=28%  Similarity=0.370  Sum_probs=58.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|.+++||+|||||+|+.||..+.|...|..|.| +| .+++.++|..++++||||+|||+|+.+.
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtit   74 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTIT   74 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHH
Confidence            6889999999999999999999999999988855 57 6899999999999999999999998764

>cd04136 Rap_like Rap-like subfamily

Probab=99.72  E-value=2.9e-17  Score=101.62  Aligned_cols=65  Identities=26%  Similarity=0.466  Sum_probs=58.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+++.+.|.+.+.|+.+ .|.+.+.+++..+.+++|||+|+++|..++.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   67 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRD   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHH
Confidence            7999999999999999999999999888888854 4677788999999999999999999987754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04134 Rho3 Rho3 subfamily

Probab=99.71  E-value=8.9e-17  Score=102.78  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=58.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      |++++|++|||||||+.+|..+.|.+++.|+. ..|.+.+.+++..+.+.+||++|+++|..+++.
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~   67 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSL   67 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccc
Confidence            89999999999999999999999999898984 456667788999999999999999999887654

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.70  E-value=7.6e-17  Score=100.80  Aligned_cols=62  Identities=73%  Similarity=1.166  Sum_probs=54.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +|++++|++|||||||+.+|+.+.|.+.+.|+.+.|.+.+.++|..+.+++||++|+++...
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~   62 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPDAQF   62 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCchhH
Confidence            48999999999999999999999998888777777777889999999999999999986543

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PTZ00369 Ras-like protein; Provisional

Probab=99.70  E-value=6.4e-17  Score=103.37  Aligned_cols=67  Identities=31%  Similarity=0.446  Sum_probs=59.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++|++++|++|||||||+.+++.+.|..++.||. ..|.+.+.+++..+.+++|||+|+++|..+++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~   71 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRD   71 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHH
Confidence            34899999999999999999999999988888984 45677888999999999999999999987764

>cd04176 Rap2 Rap2 subgroup

Probab=99.70  E-value=1.2e-16  Score=99.23  Aligned_cols=66  Identities=26%  Similarity=0.425  Sum_probs=58.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|++|||||||+.+++.+.|.+++.|+.+ .+...+.+++..+.+++|||+|+++|..+++.
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   68 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDL   68 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHH
Confidence            7999999999999999999999999988888854 45678888999999999999999999887643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04175 Rap1 Rap1 subgroup

Probab=99.70  E-value=8e-17  Score=100.18  Aligned_cols=66  Identities=29%  Similarity=0.485  Sum_probs=58.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ++|++++|+.|||||||+.+++.+.|.+.+.|+.+ .+.+.+.+++..+.+++|||+|+++|..+++
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   67 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRD   67 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHH
Confidence            37999999999999999999999999888888844 5667788899999999999999999987654

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04121 Rab40 Rab40 subfamily

Probab=99.70  E-value=5.3e-17  Score=104.45  Aligned_cols=66  Identities=17%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .+|++++|+.|||||||+.+|..+.|.+++.|+.+ .| ...+.+++..+.+++||++|+++|..+++
T Consensus         6 ~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~   73 (189)
T cd04121           6 LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFR   73 (189)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHH
Confidence            38999999999999999999999999888888743 45 56788899999999999999999987754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.69  E-value=1.3e-16  Score=98.24  Aligned_cols=65  Identities=34%  Similarity=0.469  Sum_probs=57.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+++++.+.|..++.|+.+ .|.+.+.+++..+.+++||++|+++|..++.
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~   67 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD   67 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHH
Confidence            7999999999999999999999999888888844 4667788899889999999999999876643

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.69  E-value=5.8e-17  Score=102.21  Aligned_cols=64  Identities=23%  Similarity=0.339  Sum_probs=57.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      |++++|+.|||||||+++++.+.|.++|.|+.+ .| .+.+.++|..+.+++|||+|+++|..+++
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   67 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIAS   67 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHH
Confidence            799999999999999999999999999999943 55 57788899999999999999999877653

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.68  E-value=4.1e-16  Score=98.10  Aligned_cols=66  Identities=27%  Similarity=0.387  Sum_probs=58.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|++|||||||+.+++.+.|..++.|+.. .|...+.+++..+.+++||++|+++|..+++.
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   67 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPL   67 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcccccc
Confidence            4899999999999999999999999999999854 45667889998999999999999999888754

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.67  E-value=4e-16  Score=102.21  Aligned_cols=69  Identities=22%  Similarity=0.321  Sum_probs=59.3

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ...+|+++||+.|||||||+.+++.+.|..++.||.+ .+ ...+..++..+.+.+|||+|+++|..++..
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   81 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG   81 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHH
Confidence            3458999999999999999999999999999999854 44 566777888899999999999999887643

>cd01892 Miro2 Miro2 subfamily

Probab=99.67  E-value=6.5e-16  Score=97.26  Aligned_cols=67  Identities=27%  Similarity=0.356  Sum_probs=58.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFL-QEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+|++++|++|||||||+.||+.+.|. .+|.||. ..| ...+.++|..+.+.+||++|++++..+++.
T Consensus         4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~   73 (169)
T cd01892           4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDA   73 (169)
T ss_pred             EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchh
Confidence            389999999999999999999999998 8899984 456 467888998899999999999999776553

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.66  E-value=6.9e-16  Score=96.74  Aligned_cols=66  Identities=24%  Similarity=0.313  Sum_probs=57.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .|++++|++|||||||+.+++.+.|.+.|.|+.+ .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   68 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPL   68 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhcccc
Confidence            5899999999999999999999999988888844 45567788999999999999999999876543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.66  E-value=2.8e-16  Score=101.22  Aligned_cols=65  Identities=23%  Similarity=0.352  Sum_probs=56.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-CeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-GHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+++.+.|...+.||.+ +| .+.+.++ +..+.+.+||++|+++|..+++
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~   68 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTR   68 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHH
Confidence            4899999999999999999999999988989854 45 5677888 8899999999999999987653

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=99.65  E-value=2.7e-16  Score=98.17  Aligned_cols=64  Identities=23%  Similarity=0.440  Sum_probs=56.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.|||||||+.+++.+.|.+++.|+.+ ++ .+.+.+++..+.+.+||++|+++|..++
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~   68 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVT   68 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence            7999999999999999999999999988888843 55 5677889999999999999999987654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04117 Rab15 Rab15 subfamily

Probab=99.65  E-value=3.8e-16  Score=97.40  Aligned_cols=64  Identities=27%  Similarity=0.389  Sum_probs=56.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+.+++.+.|.+++.|+.+ ++ .+.+.+++..+.+++||++|+++|..++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~   66 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTIT   66 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhH
Confidence            4899999999999999999999999988888854 45 5778889989999999999999987664

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.65  E-value=5.9e-16  Score=96.46  Aligned_cols=65  Identities=22%  Similarity=0.374  Sum_probs=55.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+++.+.|.+.+.++.+ . +...+.+++..+.+++|||+|+++|..+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   67 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHA   67 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhH
Confidence            4899999999999999999999999887777733 3 456778889999999999999999987764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.65  E-value=8.9e-16  Score=96.16  Aligned_cols=64  Identities=27%  Similarity=0.382  Sum_probs=56.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          27 LGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ++++|+.|||||||+.+++.+.|...+.|+. ..|...+.+++..+.+.+|||+|+++|..+++.
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   65 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL   65 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchh
Confidence            5799999999999999999999998888884 456667888999999999999999999887654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.65  E-value=2.1e-16  Score=102.76  Aligned_cols=65  Identities=23%  Similarity=0.292  Sum_probs=55.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-----CeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-----GHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-----g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+++.+.|.+++.||.+ .+ .+.+.++     ++.+.+++||++|+++|..+++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~   72 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRA   72 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHH
Confidence            4899999999999999999999999998988854 44 4556663     5789999999999999987654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.65  E-value=4.6e-16  Score=103.76  Aligned_cols=65  Identities=26%  Similarity=0.348  Sum_probs=57.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +||+++|+.|||||||+.+|+.+.|.++|.||.++ +.+.+.+++..+.+++|||+|+++|..++.
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~   66 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRR   66 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHH
Confidence            48999999999999999999999999889898554 467788999999999999999999877654

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0097|consensus

Probab=99.64  E-value=7.9e-17  Score=99.56  Aligned_cols=68  Identities=24%  Similarity=0.383  Sum_probs=59.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .+|.+++|+.|||||+|+++|..+.|...-+.+.+ +| ...+++.|+.++++||||+|||+|+...+++
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsy   80 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSY   80 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHH
Confidence            48999999999999999999999998876666654 57 6788999999999999999999998776554

>cd04144 Ras2 Ras2 subfamily

Probab=99.64  E-value=7.4e-16  Score=98.52  Aligned_cols=64  Identities=25%  Similarity=0.410  Sum_probs=56.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      |++++|++|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+++|||+|+++|..++.
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   65 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRD   65 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            689999999999999999999999888888854 4566778899999999999999999987653

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00023 GTP-binding protein; Provisional

Probab=99.64  E-value=6.7e-16  Score=106.31  Aligned_cols=69  Identities=19%  Similarity=0.244  Sum_probs=58.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-------------CeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-------------GHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-------------g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..+||+++|+.|||||||+++++.+.|..++.||.+ .+ .+.+.++             ++.+.++||||+||++|+.+
T Consensus        20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL   99 (334)
T PLN00023         20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC   99 (334)
T ss_pred             cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence            348999999999999999999999999988989954 44 5667765             35789999999999999988


Q ss_pred             CCCC
Q psy6968          88 NPSA   91 (93)
Q Consensus        88 ~~~~   91 (93)
                      ++..
T Consensus       100 ~~~y  103 (334)
T PLN00023        100 RSLF  103 (334)
T ss_pred             hHHh
Confidence            6543

>cd04177 RSR1 RSR1 subgroup

Probab=99.64  E-value=1.8e-15  Score=94.69  Aligned_cols=66  Identities=26%  Similarity=0.391  Sum_probs=58.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|++|||||||+.++..+.|..++.|+.+ .|.+.+.+++..+.+++||++|+++|..++..
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   68 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMREL   68 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHH
Confidence            7899999999999999999999999888888854 56677888999999999999999999877653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04135 Tc10 TC10 subfamily

Probab=99.64  E-value=2.6e-15  Score=94.02  Aligned_cols=66  Identities=26%  Similarity=0.349  Sum_probs=57.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|+|||||+.+++.+.|.+++.|+.. .+...+.+++..+.+.+||++|+++|..+++.
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   67 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL   67 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccc
Confidence            4899999999999999999999999888888844 45667888999999999999999999877654

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.64  E-value=6.2e-16  Score=95.73  Aligned_cols=64  Identities=22%  Similarity=0.356  Sum_probs=56.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+.+++.+.|.+++.|+.+ ++ .+.+.+++..+.+++|||+|+++|..++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~   66 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVR   66 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHH
Confidence            4899999999999999999999999998888844 45 5678889999999999999999876554

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04140 ARHI_like ARHI subfamily

Probab=99.64  E-value=1.7e-15  Score=94.54  Aligned_cols=64  Identities=23%  Similarity=0.340  Sum_probs=56.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+++++.+.|..++.|+.+ .|...+..++..+.+++|||+|+++|..++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~   66 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQ   66 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHH
Confidence            7999999999999999999999999888888844 566667788888999999999999997654

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.63  E-value=1.4e-15  Score=94.29  Aligned_cols=65  Identities=32%  Similarity=0.483  Sum_probs=56.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+++.+.|...+.|+.. .+.+.+.+++..+.+++|||+|+++|..++.
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~   66 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRD   66 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHH
Confidence            4899999999999999999999999888888843 4666778899999999999999999976543

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.63  E-value=7.6e-16  Score=97.73  Aligned_cols=65  Identities=22%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEEC-CeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVID-GHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|+.|||||||+.+++.+.|.+++.|+. ..|...+..+ +..+.+.+|||+|+++|..+++
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~   67 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRP   67 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHH
Confidence            489999999999999999999999998888884 4565556665 7889999999999999877654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=99.63  E-value=1.8e-15  Score=96.52  Aligned_cols=65  Identities=23%  Similarity=0.336  Sum_probs=56.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .|++++|++|||||||+.+++.+.|.. +|.|+.+ .| .+.+.+++..+.+.+||++|++++..++.
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~   68 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSR   68 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence            489999999999999999999999975 5777743 45 56788999999999999999999877654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.62  E-value=3e-15  Score=92.67  Aligned_cols=65  Identities=29%  Similarity=0.406  Sum_probs=56.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|++|+|||||+.+++.+.|..++.|+.+ .+.....+++..+.+++|||+|++++..++
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   67 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMR   67 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHH
Confidence            38999999999999999999999999888888844 456667889999999999999999987654

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>KOG0091|consensus

Probab=99.62  E-value=5.6e-17  Score=101.98  Aligned_cols=70  Identities=24%  Similarity=0.353  Sum_probs=58.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEE-CCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVI-DGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~-~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      ++++++++||+-||||+|+++|..+.|.+--+||.| + |..-+++ +|..|++++|||+|||+|+++..+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy   79 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY   79 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh
Confidence            358999999999999999999999999988899954 3 4444444 58899999999999999999876543

>cd04116 Rab9 Rab9 subfamily

Probab=99.62  E-value=1.4e-15  Score=95.07  Aligned_cols=66  Identities=27%  Similarity=0.391  Sum_probs=57.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .+|++++|++|||||||+.+++.+.|.+++.++.+ ++ .+.+.+++..+.+++||++|+++|..++.
T Consensus         5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~   72 (170)
T cd04116           5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRT   72 (170)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHH
Confidence            48999999999999999999999999887777744 44 56788999999999999999999876654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01865 Rab3 Rab3 subfamily

Probab=99.62  E-value=1.4e-15  Score=94.91  Aligned_cols=64  Identities=22%  Similarity=0.322  Sum_probs=55.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+..++..+.+++||++|+++|..++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~   67 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT   67 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence            7999999999999999999999999888888855 45 4567778888999999999999887654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.61  E-value=4e-15  Score=93.34  Aligned_cols=65  Identities=18%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+..++..+.+.+|||+|++++..++.
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   67 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD   67 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccH
Confidence            4899999999999999999999999888888854 44 45566788889999999999999987754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.61  E-value=3.8e-15  Score=92.25  Aligned_cols=62  Identities=31%  Similarity=0.506  Sum_probs=55.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      |++++|+.|||||||+.+|..+.|.+++.|+.+ + +...+.+++..+.+++||++|+++|..+
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~   64 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSL   64 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999999999999999853 4 4788899999999999999999987543

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.61  E-value=6.2e-15  Score=95.85  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=58.4

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ....+|++++|++|||||||+++++.+.|..+|.||.+ ++ ...+..++..+.+++||++|+++|..++.
T Consensus         6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~   76 (215)
T PTZ00132          6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRD   76 (215)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence            34558999999999999999999999999988989854 34 45666788899999999999999876653

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.61  E-value=3.2e-15  Score=93.44  Aligned_cols=65  Identities=25%  Similarity=0.339  Sum_probs=57.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|++|||||||+.++..+.|.++|.|+.+ .+ ...+.+++..+.+++||++|++++..++
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~   69 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTIT   69 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence            48999999999999999999999999999888854 45 4677889989999999999999887654

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04110 Rab35 Rab35 subfamily

Probab=99.61  E-value=4.3e-15  Score=95.72  Aligned_cols=65  Identities=28%  Similarity=0.350  Sum_probs=56.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|+.|||||||+.+++.+.|...+.||.+ .+ ...+.+++..+.+.+||++|+++|..++
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~   72 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTIT   72 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHH
Confidence            48999999999999999999999999888888854 45 5677888988999999999999987654

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04125 RabA_like RabA-like subfamily

Probab=99.60  E-value=2.7e-15  Score=95.57  Aligned_cols=64  Identities=28%  Similarity=0.417  Sum_probs=55.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.|||||||+++++.+.|...+.|+.+ ++ .+.+.+++..+.+++||++|+++|..++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~   66 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN   66 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence            4899999999999999999999999887888844 45 5678889999999999999999887554

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.60  E-value=5.7e-15  Score=91.96  Aligned_cols=64  Identities=23%  Similarity=0.389  Sum_probs=55.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+.+++.+.|...+.|+.+ .+ .+.+.+++..+.+++||++|+++|..++
T Consensus         3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   68 (166)
T cd01869           3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT   68 (166)
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHH
Confidence            7999999999999999999999999888878744 45 5678888999999999999999987653

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0088|consensus

Probab=99.59  E-value=4.4e-16  Score=97.63  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-ccee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      ...+|++++|+.-||||+|+.||+.+.|...+..| ...| .+.+.+.++...+.||||+|||+|..+.|.+|
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY   83 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY   83 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence            34599999999999999999999999999888777 4556 67888989999999999999999999987654

>KOG0395|consensus

Probab=99.59  E-value=1.7e-15  Score=98.09  Aligned_cols=66  Identities=29%  Similarity=0.528  Sum_probs=61.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..|++++|..|||||+|+.+|+++.|.++|+|| ++.|.+.+.+++..+.++|+||+||++|..|+.
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~   69 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRD   69 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHH
Confidence            489999999999999999999999999999999 456889999999999999999999999987754

>PLN03110 Rab GTPase; Provisional

Probab=99.59  E-value=5.7e-15  Score=96.46  Aligned_cols=65  Identities=20%  Similarity=0.359  Sum_probs=57.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|+.|||||||+.+++.+.|..++.|+.+ ++ .+.+.+++..+.+++||++|+++|..++
T Consensus        12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~   78 (216)
T PLN03110         12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAIT   78 (216)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence            38999999999999999999999999888888844 55 6788899999999999999999987654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.58  E-value=1.9e-15  Score=97.93  Aligned_cols=67  Identities=19%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +|++++|+.|||||||++++..+.|.+.+.|+.+ .+ ......++..+++.+|||+||++|+.+++.+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y   74 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEY   74 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHH
Confidence            8999999999999999999999999999999844 45 3455555558999999999999997776543

>cd01864 Rab19 Rab19 subfamily

Probab=99.58  E-value=5.7e-15  Score=91.97  Aligned_cols=65  Identities=25%  Similarity=0.420  Sum_probs=55.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|+.|+|||||+.++..+.|.+++.++.+ ++ .+.+.+++..+.+.+||++|+++|..++
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~   69 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT   69 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence            38999999999999999999999999888877744 44 5678889988999999999999886543

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.58  E-value=5.5e-15  Score=91.43  Aligned_cols=64  Identities=23%  Similarity=0.461  Sum_probs=54.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC--CeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID--GHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~--g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|+|||||+.+++.+.|.+.+.|+.+ +| ...+.++  +..+.+.+||++|+++|..++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   68 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAIT   68 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhH
Confidence            4899999999999999999999999888888843 55 5667777  778999999999999887654

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.57  E-value=1.4e-14  Score=90.94  Aligned_cols=61  Identities=25%  Similarity=0.453  Sum_probs=54.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .|++++|++|||||||+.+++.+.|+..+.++.+ .+ .+.+.+++..+.+.+||++|+++|.
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   65 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR   65 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH
Confidence            7999999999999999999999999888888743 44 5678889999999999999999885

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04127 Rab27A Rab27a subfamily

Probab=99.57  E-value=6.1e-15  Score=92.89  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=53.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC----------CeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID----------GHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~----------g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|++|||||||+.+++.+.|.+++.|+.+ ++ ...+.++          +..+.+++||++||++|..++
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   80 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT   80 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence            48999999999999999999999999998888844 44 4445543          457899999999999886543

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0093|consensus

Probab=99.57  E-value=3.1e-15  Score=92.78  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=57.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|++.+|||+++.||+.+.|...+..|.| .| .+++.-..+.+++++|||+|||+|+.+..+
T Consensus        22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTa   89 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTA   89 (193)
T ss_pred             eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHH
Confidence            7999999999999999999999999888888855 57 466666778899999999999999876543

>cd04109 Rab28 Rab28 subfamily

Probab=99.57  E-value=5.8e-15  Score=96.19  Aligned_cols=65  Identities=25%  Similarity=0.295  Sum_probs=55.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECC-eEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDG-HSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g-~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+|+.+.|...|.||.+ + +.+.+.+++ ..+.+++||++|++.+..+++
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~   68 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLD   68 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHH
Confidence            4899999999999999999999999999999954 4 467788865 579999999999998776543

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04111 Rab39 Rab39 subfamily

Probab=99.56  E-value=9.1e-15  Score=95.26  Aligned_cols=65  Identities=28%  Similarity=0.461  Sum_probs=55.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEE-CCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVI-DGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~-~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|+.|||||||+.+++.+.|...+.|+.+ ++ .+.+.+ ++..+.+++||++|+++|..++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~   69 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSIT   69 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHH
Confidence            48999999999999999999999999888888844 44 566766 4678999999999999987654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.56  E-value=1.5e-14  Score=89.48  Aligned_cols=64  Identities=25%  Similarity=0.394  Sum_probs=55.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.+||||||+++++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~   67 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA   67 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence            7999999999999999999999998887777744 45 6788899999999999999999886543

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.56  E-value=6.7e-15  Score=95.47  Aligned_cols=61  Identities=18%  Similarity=0.205  Sum_probs=53.7

Q ss_pred             ECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          30 VGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        30 vG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ||+.|||||||+.||+.+.|..+|.||.+ .+ .+.+.+++..+++.+|||+|+++|..+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~   63 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDG   63 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHH
Confidence            69999999999999999999988999954 45 677888999999999999999999887653

Ran is involved in the active transport of proteins through nuclear pores.

>PLN03108 Rab family protein; Provisional

Probab=99.55  E-value=1.6e-14  Score=93.98  Aligned_cols=65  Identities=23%  Similarity=0.307  Sum_probs=56.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|++|||||||+.+++.+.|...+.|+.+ ++ .+.+.+++..+.+.+|||+|+++|..++
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~   72 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSIT   72 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence            48999999999999999999999989887888743 45 5678899999999999999999887654

>cd04113 Rab4 Rab4 subfamily

Probab=99.55  E-value=1.5e-14  Score=89.53  Aligned_cols=64  Identities=28%  Similarity=0.471  Sum_probs=54.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+++||++|+++|..++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~   66 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence            4899999999999999999999998887777743 44 5677888888999999999999886543

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.55  E-value=2.9e-14  Score=88.78  Aligned_cols=59  Identities=34%  Similarity=0.528  Sum_probs=51.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      |++++|++|||||||+.+++.+.|..+|.|+. ..+...+.++++.+.+++||++|++++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   60 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQA   60 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCccc
Confidence            68999999999999999999999988888884 346667788999999999999999863

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01868 Rab11_like Rab11-like

Probab=99.55  E-value=1.7e-14  Score=89.67  Aligned_cols=66  Identities=23%  Similarity=0.372  Sum_probs=56.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .+|++++|+++||||||+.+++.+.|..++.|+.+ ++ ...+.+++..+.+.+||++|++++..+++
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   70 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITS   70 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence            37999999999999999999999999888888854 45 67788889889999999999998876543

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd00157 Rho Rho (Ras homology) family

Probab=99.55  E-value=6e-14  Score=87.31  Aligned_cols=65  Identities=28%  Similarity=0.425  Sum_probs=55.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+++++.+.+...+.|+. ..+...+..++..+.+++||++|++++..++.
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~   66 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP   66 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccch
Confidence            489999999999999999999999877777774 34566677889999999999999998866544

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04142 RRP22 RRP22 subfamily

Probab=99.55  E-value=4.2e-14  Score=91.44  Aligned_cols=61  Identities=28%  Similarity=0.456  Sum_probs=52.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      +|++++|++|||||||+.+++.+.|...+.|+.+ + +...+.++|+.+.+++|||+|++++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~   63 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP   63 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC
Confidence            4899999999999999999999999988888843 3 45677889999999999999987664

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04112 Rab26 Rab26 subfamily

Probab=99.55  E-value=2.2e-14  Score=91.76  Aligned_cols=64  Identities=30%  Similarity=0.454  Sum_probs=53.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.|||||||+.+++.+.|.. ++.++.+ .+ ...+.+++..+.+.+|||+|+++|..++
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   67 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVT   67 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhh
Confidence            489999999999999999999999864 5667743 45 4567889999999999999999887654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04129 Rho2 Rho2 subfamily

Probab=99.54  E-value=6.1e-14  Score=89.45  Aligned_cols=65  Identities=29%  Similarity=0.429  Sum_probs=55.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .|++++|++|||||||+.++..+.|.+++.++. ..+...+.+++..+.+.+||++|++++..+++
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~   67 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP   67 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccch
Confidence            689999999999999999999899888887773 44556778889889999999999999876553

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01866 Rab2 Rab2 subfamily

Probab=99.54  E-value=3.1e-14  Score=89.11  Aligned_cols=65  Identities=25%  Similarity=0.338  Sum_probs=55.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|++|||||||+++++.+.+...+.++.+ ++ ...+.+++..+.+.+||++|+++|..++
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   70 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSIT   70 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence            37999999999999999999999998888777743 44 5667888989999999999999887654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01893 Miro1 Miro1 subfamily

Probab=99.53  E-value=2.8e-14  Score=89.18  Aligned_cols=63  Identities=16%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .|++++|+.|||||||+.+++.+.|..++.++...+.....+++..+.+.+|||+|++++...
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   63 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRAN   63 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHH
Confidence            389999999999999999999999987765554445445567788899999999999887543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.53  E-value=7.8e-14  Score=90.08  Aligned_cols=59  Identities=25%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             eeEEEECCCCCCHHHHHH-HHHhCC-----CCCCCCCCcc---eeEEE--------EEECCeEEEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVH-RFMTGA-----FLQEESPEGG---RFKKE--------VVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~-r~~~~~-----f~~~~~~t~~---~~~~~--------~~~~g~~i~~~i~d~~g~~~   83 (93)
                      +|++++|+.|||||||+. ++..+.     |.++|.||.+   .|...        +.++|+.+.+++|||+||++
T Consensus         3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~   78 (195)
T cd01873           3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD   78 (195)
T ss_pred             eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh
Confidence            799999999999999996 565543     5567788852   34332        26799999999999999986

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.52  E-value=5.1e-14  Score=87.72  Aligned_cols=64  Identities=27%  Similarity=0.404  Sum_probs=54.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+++++++.+...+.++.+ .+ .+.+.+++..+.+.+||++|++.|..++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   66 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG   66 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH
Confidence            4899999999999999999999998887777743 44 5678889999999999999998887554

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.52  E-value=4e-14  Score=91.08  Aligned_cols=64  Identities=27%  Similarity=0.306  Sum_probs=55.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      |++++|+.|||||||+.+++.+.|..++.++.. .+...+.+++..+.+++||++|+++|..++.
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~   65 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRK   65 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHH
Confidence            689999999999999999999999888888843 3456788889889999999999999876643

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0083|consensus

Probab=99.52  E-value=5.2e-16  Score=95.06  Aligned_cols=63  Identities=27%  Similarity=0.387  Sum_probs=53.3

Q ss_pred             EECCCCCCHHHHHHHHHhCCCCCC-CCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        29 lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      ++|++++|||+|+.||-.+.|... ..+|.+ +| .+.+..+++.+++++|||+|||+|++...++
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ay   67 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAY   67 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhh
Confidence            689999999999999999988764 445544 67 5788899999999999999999999886554

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.52  E-value=6.6e-14  Score=86.40  Aligned_cols=64  Identities=30%  Similarity=0.465  Sum_probs=55.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||+.+++.+.|...+.++.+ .+.+...+++..+.+.+||++|++++..++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   65 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIR   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHH
Confidence            4899999999999999999999999888888743 466677889999999999999999886654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01861 Rab6 Rab6 subfamily

Probab=99.51  E-value=5.7e-14  Score=86.77  Aligned_cols=64  Identities=20%  Similarity=0.344  Sum_probs=54.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .|++++|+++||||||+++++.+.+...+.|+.+ ++ .+.+.+++..+.+.+||++|++++..+.
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~   66 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLI   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence            3899999999999999999999998877777744 34 6778888888999999999999886543

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG0081|consensus

Probab=99.50  E-value=4.1e-16  Score=97.83  Aligned_cols=65  Identities=20%  Similarity=0.355  Sum_probs=54.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC---------CeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID---------GHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~---------g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|.+.+||+|||||+++++|..+.|......|.+ +| .+.+.++         +..|.+++|||+|||+|+++..
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            6889999999999999999999999888777744 56 4555542         4579999999999999998753

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.50  E-value=3.9e-14  Score=88.77  Aligned_cols=61  Identities=20%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ++++|+.|||||||+.+++.+.|..++.||.+..  .+.+++..+++.+||++|+++|+.+++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~--~~~i~~~~~~l~i~Dt~G~~~~~~~~~   62 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN--SVAIPTQDAIMELLEIGGSQNLRKYWK   62 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcc--eEEEeeCCeEEEEEECCCCcchhHHHH
Confidence            7899999999999999999998888888985532  234566678999999999999977653

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.49  E-value=5.3e-14  Score=87.22  Aligned_cols=63  Identities=32%  Similarity=0.391  Sum_probs=51.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC--CCCCCCCCCcc-ee-EEEEEEC-CeEEEEEEEecCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG-RF-KKEVVID-GHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~--~f~~~~~~t~~-~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~   87 (93)
                      +|++++|++|||||||+.++..+  .|.+++.|+.+ ++ .+.+.++ +..+.+.+||++|++++..+
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~   68 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM   68 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH
Confidence            48999999999999999998865  68888888854 44 5566665 57899999999999887654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03118 Rab family protein; Provisional

Probab=99.49  E-value=1.6e-13  Score=88.99  Aligned_cols=64  Identities=22%  Similarity=0.402  Sum_probs=53.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|+.|||||||+.+++.+.+. ++.|+.+ .+ ...+.+++..+.+.+|||+|+++|..++
T Consensus        14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~   79 (211)
T PLN03118         14 SFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLT   79 (211)
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence            489999999999999999999988874 4667744 44 5677888888999999999999987654

>cd01863 Rab18 Rab18 subfamily

Probab=99.49  E-value=2.3e-13  Score=84.15  Aligned_cols=64  Identities=27%  Similarity=0.417  Sum_probs=54.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.+||||||+++++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   66 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT   66 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence            4899999999999999999999988777777743 45 4567788888999999999999887654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04148 RGK RGK subfamily

Probab=99.49  E-value=2.2e-13  Score=89.36  Aligned_cols=58  Identities=26%  Similarity=0.480  Sum_probs=51.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL-QEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      +||+++|++|||||||+.+|+.+.|. ..+.|+.+ + +.+.+.+++..+.+.+||++|++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~   61 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE   61 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence            48999999999999999999999887 66777753 3 57788999999999999999998

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.48  E-value=1.4e-13  Score=84.96  Aligned_cols=63  Identities=27%  Similarity=0.461  Sum_probs=52.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      +|++++|++|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+||++|++++..+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   65 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSI   65 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence            4899999999999999999999888777767733 44 567788898899999999999887654

Rab GTPases are implicated in vesicle trafficking.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.47  E-value=2e-13  Score=86.09  Aligned_cols=64  Identities=27%  Similarity=0.362  Sum_probs=54.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .|++++|++|||||||+.++..+.+...+.|+.. .+...+.+++..+.+++||++|+++|..++
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   66 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILP   66 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHH
Confidence            6899999999999999999999998887888743 456677888888999999999999886543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04123 Rab21 Rab21 subfamily

Probab=99.46  E-value=2.4e-13  Score=83.61  Aligned_cols=65  Identities=25%  Similarity=0.393  Sum_probs=53.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|+.|+|||||+++++.+.+...+.++. ..+ ...+.+.+..+.+.+||++|++++..+++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   67 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGP   67 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhH
Confidence            489999999999999999999998877666663 334 56677788889999999999998876654

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04114 Rab30 Rab30 subfamily

Probab=99.44  E-value=6.6e-13  Score=82.64  Aligned_cols=64  Identities=28%  Similarity=0.420  Sum_probs=53.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..|++++|++|||||||+.+++.+.+.+.+.++.+ .+ ...+.+++..+.+.+||++|+++|..+
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   72 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSI   72 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence            48999999999999999999998888777767643 33 567788999999999999999887654

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04126 Rab20 Rab20 subfamily

Probab=99.43  E-value=4.5e-13  Score=88.12  Aligned_cols=61  Identities=21%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|+.|||||||+.+++.+.|.+ +.||.+ .+.. ..+  ..+.+.+|||+|+++|..++.
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~-~~~--~~~~l~iwDt~G~e~~~~l~~   62 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYL-KQW--GPYNISIWDTAGREQFHGLGS   62 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEE-EEe--eEEEEEEEeCCCcccchhhHH
Confidence            489999999999999999999999975 467743 3321 112  467899999999999987654

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04149 Arf6 Arf6 subfamily

Probab=99.43  E-value=1.4e-13  Score=86.66  Aligned_cols=63  Identities=19%  Similarity=0.282  Sum_probs=48.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+|++++|+.|||||||++++..+.|.. +.||.+.....+..  ..+.+++||++|+++++.++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~   70 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY--KNVKFNVWDVGGQDKIRPLW   70 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence            34899999999999999999998888764 56775432223333  45889999999999986653

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.42  E-value=2e-13  Score=86.98  Aligned_cols=63  Identities=21%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+.|++++|+.+||||||+.++..+.|.. +.||.+.....+..  ..+.+++||++||++++.++
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~~~~~~--~~~~~~i~D~~Gq~~~~~~~   78 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW   78 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeEEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence            34899999999999999999998888864 66775532223333  45889999999999987654

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.42  E-value=1.6e-13  Score=85.58  Aligned_cols=61  Identities=21%  Similarity=0.302  Sum_probs=47.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.+||||||+.++..+.|.. +.||.+.-...+..  ..+.+.+||++|+++|..++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~~~~~--~~~~~~l~D~~G~~~~~~~~   61 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEY--KNISFTVWDVGGQDKIRPLW   61 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEEEE--CCEEEEEEECCCCHhHHHHH
Confidence            489999999999999999998888874 67775421223333  45889999999999886553

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.42  E-value=2.1e-13  Score=86.88  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..+|++++|+.|||||||+.++..+.|.. +.||.+.....+..  ..+.+++||++|+++++.+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~~--~~~~~~l~D~~G~~~~~~~   77 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVEY--KNLKFTMWDVGGQDKLRPL   77 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEEE--CCEEEEEEECCCCHhHHHH
Confidence            34899999999999999999998888875 56775432223333  4588999999999988754

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.42  E-value=5.9e-13  Score=84.17  Aligned_cols=62  Identities=21%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..|++++|++|||||||+.++..+.|.. +.||.+.....+..  ..+.+.+||++|++++..++
T Consensus        13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~~~~~~--~~~~l~l~D~~G~~~~~~~~   74 (175)
T smart00177       13 EMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNVETVTY--KNISFTVWDVGGQDKIRPLW   74 (175)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccceEEEEE--CCEEEEEEECCCChhhHHHH
Confidence            4899999999999999999998888854 66775432223344  35889999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.41  E-value=5.2e-13  Score=84.98  Aligned_cols=63  Identities=22%  Similarity=0.375  Sum_probs=49.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEE-CCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVI-DGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~-~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .+|++++|+.|||||||+.+++.+.|..+ .||.+ . +...+.+ ++..+.+.+|||+|++++..+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~   68 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL   68 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH
Confidence            38999999999999999999999888765 56643 2 2334444 456789999999999988654

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00876 Ras Ras family

Probab=99.41  E-value=6.9e-13  Score=81.41  Aligned_cols=62  Identities=29%  Similarity=0.495  Sum_probs=52.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      |++++|+.|||||||+.+++.+.+...+.|+.. .+......++..+.+++||+.|++++..+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   63 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAM   63 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHH
Confidence            689999999999999999999888888888844 34667778888899999999998876543

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.38  E-value=3.7e-12  Score=77.05  Aligned_cols=63  Identities=22%  Similarity=0.389  Sum_probs=51.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      +|++++|..|+|||||+.+++.+.++.++.++. ..+ ...+..++..+.+.+||+.|++++..+
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   66 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAI   66 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHH
Confidence            799999999999999999999988777776663 234 445677887789999999999888544

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00154 Rab Rab family

Probab=99.36  E-value=4.2e-12  Score=77.26  Aligned_cols=62  Identities=27%  Similarity=0.487  Sum_probs=51.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +|++++|++++|||||+.++..+.+...+.++.+ .+ ...+..++..+.+.+||++|++++..
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   64 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRS   64 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHH
Confidence            4799999999999999999999998887667743 34 56777788889999999999887643

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04158 ARD1 ARD1 subfamily

Probab=99.35  E-value=4.7e-12  Score=79.44  Aligned_cols=60  Identities=23%  Similarity=0.298  Sum_probs=46.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      |++++|+.+||||||+.++..+.|.. +.||.+.-...+..  ..+.+.+||++|++++..++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~~~~--~~~~i~l~Dt~G~~~~~~~~   60 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVETVEY--KNLKFTIWDVGGKHKLRPLW   60 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEEEEE--CCEEEEEEECCCChhcchHH
Confidence            68999999999999999999987764 67775422123333  45788999999999886543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04154 Arl2 Arl2 subfamily

Probab=99.34  E-value=2.3e-12  Score=80.99  Aligned_cols=61  Identities=26%  Similarity=0.368  Sum_probs=47.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..+++++|++|||||||+.++..+.+ ..+.|+.+.....+.+++  +.+.+||++|+++++.+
T Consensus        14 ~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~--~~l~l~D~~G~~~~~~~   74 (173)
T cd04154          14 EMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQIKTLEYEG--YKLNIWDVGGQKTLRPY   74 (173)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccceEEEEECC--EEEEEEECCCCHHHHHH
Confidence            47999999999999999999887754 456677553244556654  77899999999987654

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG1673|consensus

Probab=99.33  E-value=7.8e-13  Score=82.83  Aligned_cols=72  Identities=26%  Similarity=0.420  Sum_probs=62.5

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      ++.-..|+.++||+..|||||+.+|.++.+.+++..+.| ++ .+++.+.|.++.+.|||..||++|.++.|.+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia   89 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA   89 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence            344458999999999999999999999999887777744 56 7899999999999999999999999887743

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.31  E-value=1.9e-12  Score=81.26  Aligned_cols=60  Identities=22%  Similarity=0.179  Sum_probs=46.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +++++|++|||||||+.++..+ |..++.||.+.....+..+  .+.+.+||++|+++++.++
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~~~--~~~~~i~D~~G~~~~~~~~   60 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLRLD--KYEVCIFDLGGGANFRGIW   60 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEEEC--CEEEEEEECCCcHHHHHHH
Confidence            4799999999999999877755 7777888855333344454  4788999999998876553

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04157 Arl6 Arl6 subfamily

Probab=99.30  E-value=4.7e-12  Score=78.10  Aligned_cols=61  Identities=15%  Similarity=0.035  Sum_probs=45.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGA-FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +++++|++|||||||+.++..+. +...+.|+.+.....+.  ...+.+.+||++|++++..++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~--~~~~~~~l~Dt~G~~~~~~~~   62 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE--KGNLSFTAFDMSGQGKYRGLW   62 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE--ECCEEEEEEECCCCHhhHHHH
Confidence            47899999999999999998875 45567787542122222  345788999999999886553

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.29  E-value=1.6e-11  Score=74.85  Aligned_cols=59  Identities=27%  Similarity=0.383  Sum_probs=46.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          27 LGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ++++|++|||||||++++....|..++.|+.+.-...+..++  +.+.+||++|++++..+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~   60 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGN--VTLKVWDLGGQPRFRSM   60 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECC--EEEEEEECCCCHhHHHH
Confidence            789999999999999999999898888888542112334433  78999999999887643

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd00879 Sar1 Sar1 subfamily

Probab=99.28  E-value=1.5e-11  Score=78.19  Aligned_cols=60  Identities=17%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ..|++++|++|||||||++++..+.+. .+.|+.+.....+.+++  +.+.+||++|++++..
T Consensus        19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~i~~~~--~~~~l~D~~G~~~~~~   78 (190)
T cd00879          19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEELTIGN--IKFKTFDLGGHEQARR   78 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEEEEECC--EEEEEEECCCCHHHHH
Confidence            379999999999999999999887764 46677443334566765  5778999999987754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.28  E-value=8.7e-12  Score=78.62  Aligned_cols=62  Identities=26%  Similarity=0.400  Sum_probs=47.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..|++++|++|+|||||+.++..+.|.. +.|+.+.....+.++  .+.+.+||++|++++..++
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~~--~~~~~l~D~~G~~~~~~~~   76 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVYK--NIRFLMWDIGGQESLRSSW   76 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEEC--CeEEEEEECCCCHHHHHHH
Confidence            3899999999999999999999988875 456644222234444  4789999999999886543

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.26  E-value=1.3e-11  Score=76.10  Aligned_cols=60  Identities=17%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      +++++|++|||||||+.++..+.+... .|+.+.....+..+ ..+.+.+||++|++++..+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~   60 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVEMLQLE-KHLSLTVWDVGGQEKMRTV   60 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceEEEEeC-CceEEEEEECCCCHhHHHH
Confidence            589999999999999999999887654 56644212334443 4578999999999887654

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.25  E-value=3.5e-11  Score=71.16  Aligned_cols=62  Identities=23%  Similarity=0.365  Sum_probs=44.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-ccee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ||+|+|+.|||||||+.+++.+.+..  .+.+. ...+ .....++.....+.+||++|++.+...
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~   66 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ   66 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc
Confidence            78999999999999999999988761  12222 2233 345667777777999999999877553

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.23  E-value=2.3e-11  Score=75.53  Aligned_cols=60  Identities=18%  Similarity=0.147  Sum_probs=41.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCC------CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGA------FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~------f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      +++++|+.|||||||+.++....      +..++.|+.+.....+.+++  ..+.+||++|++++..+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~   66 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN--ARLKFWDLGGQESLRSL   66 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC--EEEEEEECCCChhhHHH
Confidence            58999999999999998876532      22334555332223455553  68889999999987654

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>KOG4252|consensus

Probab=99.23  E-value=9.2e-14  Score=88.78  Aligned_cols=65  Identities=20%  Similarity=0.363  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|..+|||+|++.||+.|.|...|.-+.+ +| ...+.+++..+.+.+||++|||+|..+..
T Consensus        21 iK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItk   87 (246)
T KOG4252|consen   21 IKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITK   87 (246)
T ss_pred             EEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHH
Confidence            8999999999999999999999999988888754 45 45677888888899999999999987643

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.22  E-value=1.3e-11  Score=78.61  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=45.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..+++++|++|||||||++++..+.+.. +.|+.+.....+.+++  +++.+||++|++++..+
T Consensus        17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~   77 (184)
T smart00178       17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTSEELAIGN--IKFTTFDLGGHQQARRL   77 (184)
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccceEEEEECC--EEEEEEECCCCHHHHHH
Confidence            3899999999999999999999887653 4566432222444544  67889999999877544

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04151 Arl1 Arl1 subfamily

Probab=99.22  E-value=8.5e-12  Score=77.20  Aligned_cols=60  Identities=22%  Similarity=0.284  Sum_probs=44.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      |++++|+++||||||++++..+.+.. +.|+.+.....+..  ..+.+++||++|+++|..++
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~   60 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVETVTY--KNLKFQVWDLGGQTSIRPYW   60 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEEEEE--CCEEEEEEECCCCHHHHHHH
Confidence            68999999999999999998877764 45664321223333  45789999999999886543

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.22  E-value=3.1e-11  Score=74.45  Aligned_cols=60  Identities=20%  Similarity=0.257  Sum_probs=44.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      |++++|+.|||||||+.+++.+.+ .++.++.+.....+.++  .+.+.+||++|++++..++
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~~   60 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVETVEYK--NVSFTVWDVGGQDKIRPLW   60 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEEEEEC--CEEEEEEECCCChhhHHHH
Confidence            689999999999999999998874 34556644222334454  4789999999999876543

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0096|consensus

Probab=99.21  E-value=2.9e-11  Score=77.67  Aligned_cols=68  Identities=18%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEE-CCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVI-DGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~-~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..+|++++|+.|.|||+++.|++++.|...|.||.+. ..+.+-. |...|++..|||+|||.+..++.-
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg   78 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG   78 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc
Confidence            3589999999999999999999999999999999653 2222222 223699999999999999776543

>KOG0070|consensus

Probab=99.16  E-value=3e-11  Score=76.92  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .+..+.+|+++|-.++||||+++++-.+.+... .||.|.-..++.+.  .+++.+||..||++++.+++.+
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk--n~~f~vWDvGGq~k~R~lW~~Y   81 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK--NISFTVWDVGGQEKLRPLWKHY   81 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc--ceEEEEEecCCCcccccchhhh
Confidence            455679999999999999999999988887765 68866433455664  6899999999999999886654

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.15  E-value=3.3e-11  Score=76.45  Aligned_cols=66  Identities=27%  Similarity=0.352  Sum_probs=51.2

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..+.+++++|..|+||||+++++..+.+.+ +.||.+.....+.+++  +.+.+||.+|++.++.+++.
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~~~i~~~~--~~~~~~d~gG~~~~~~~w~~   77 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNIEEIKYKG--YSLTIWDLGGQESFRPLWKS   77 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEEEEEEETT--EEEEEEEESSSGGGGGGGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccccceeeeCc--EEEEEEecccccccccccee
Confidence            456999999999999999998887765543 5677664445667766  56789999999988777653

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04155 Arl3 Arl3 subfamily

Probab=99.13  E-value=2.7e-10  Score=71.15  Aligned_cols=59  Identities=24%  Similarity=0.324  Sum_probs=44.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ..+++++|++|||||||+.++....+. .+.|+.+.....+..++  ..+.+||++|++++.
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~~i~~~~--~~~~~~D~~G~~~~~   72 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIKTVQSDG--FKLNVWDIGGQRAIR   72 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEEECC--EEEEEEECCCCHHHH
Confidence            489999999999999999877766553 35666553234556665  567899999988764

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.12  E-value=1.7e-10  Score=74.88  Aligned_cols=61  Identities=20%  Similarity=0.285  Sum_probs=44.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEE-EEEECCeEEEEEEEecCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKK-EVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~-~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      .++++|++|||||+|+.++..+.+...+.++...+.. .....+....+.+||++|+++++.
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~   63 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRD   63 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHH
Confidence            5899999999999999999999887766544322211 111124457889999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG0073|consensus

Probab=99.10  E-value=1.6e-10  Score=72.76  Aligned_cols=65  Identities=26%  Similarity=0.270  Sum_probs=52.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +++++++|..++||||+++++.... .+...|+.+.-.+++.+++  .++++||..||...++.++.+
T Consensus        16 E~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~~~--~~L~iwDvGGq~~lr~~W~nY   80 (185)
T KOG0073|consen   16 EVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEYKG--YTLNIWDVGGQKTLRSYWKNY   80 (185)
T ss_pred             eeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEecc--eEEEEEEcCCcchhHHHHHHh
Confidence            5899999999999999998877654 5557788764467777755  788999999999988776543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.08  E-value=3.5e-10  Score=75.31  Aligned_cols=52  Identities=29%  Similarity=0.561  Sum_probs=45.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..+.+||++|||||||+ |.+.|.    ..|+.|    ++.++|.++
T Consensus        16 ~~vl~~i~L~v~~G---EfvsilGpSGcGKSTLL-riiAGL----~~p~~G----~V~~~g~~v   67 (248)
T COG1116          16 VEVLEDINLSVEKG---EFVAILGPSGCGKSTLL-RLIAGL----EKPTSG----EVLLDGRPV   67 (248)
T ss_pred             eEEeccceeEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCccc
Confidence            45689999999999   99999999999999999 999998    577877    677777654

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.07  E-value=3e-10  Score=72.74  Aligned_cols=63  Identities=21%  Similarity=0.348  Sum_probs=45.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh--CCCCCCCC------------CCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT--GAFLQEES------------PEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~--~~f~~~~~------------~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      -+++++|+.+||||||+.+++.  +.|...+.            ++.+ .+ .+...++...+.+.+|||+|+++|..+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            4799999999999999999997  66655431            1111 11 233445556678999999999988543

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04171 SelB SelB subfamily

Probab=99.07  E-value=2.8e-10  Score=70.08  Aligned_cols=59  Identities=14%  Similarity=0.095  Sum_probs=39.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh---CCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMT---GAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~---~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .++++|+++||||||+.++..   +.+..++.+.  .+.-...+.+++ ...+.+|||+|+++|.
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~   65 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFI   65 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHH
Confidence            578999999999999999885   3444333332  111112344442 3578999999998874

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.06  E-value=4.6e-10  Score=77.90  Aligned_cols=50  Identities=28%  Similarity=0.554  Sum_probs=45.5

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++.+..|   ..++++||+||||||++ |.+.|.    ..|+.|    ++.++|+.+
T Consensus        18 ~l~~i~l~i~~G---ef~vllGPSGcGKSTlL-r~IAGL----e~~~~G----~I~i~g~~v   67 (338)
T COG3839          18 VLKDVNLDIEDG---EFVVLLGPSGCGKSTLL-RMIAGL----EEPTSG----EILIDGRDV   67 (338)
T ss_pred             eeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence            688999999999   99999999999999999 999998    678888    788888766

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.05  E-value=5.4e-10  Score=77.93  Aligned_cols=52  Identities=27%  Similarity=0.519  Sum_probs=46.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...+.++++++.+|   ..+.++|++||||||++ |.+.|.    ..|+.|    ++.++|+.+
T Consensus        18 ~~av~~isl~i~~G---ef~~lLGPSGcGKTTlL-R~IAGf----e~p~~G----~I~l~G~~i   69 (352)
T COG3842          18 FTAVDDISLDIKKG---EFVTLLGPSGCGKTTLL-RMIAGF----EQPSSG----EILLDGEDI   69 (352)
T ss_pred             eeEEecceeeecCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence            34579999999999   99999999999999999 999998    678888    788888765

>cd01850 CDC_Septin CDC/Septin

Probab=99.05  E-value=2.1e-09  Score=72.88  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCC----------CCCCcc--eeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQE----------ESPEGG--RFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~----------~~~t~~--~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      .++++++|++|+|||||+++++...+...          +.++..  .+...+..+|..+++.+|||+|...+
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~   76 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN   76 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence            48999999999999999999998776543          223321  23445667888899999999996544

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK04213 GTP-binding protein; Provisional

Probab=99.04  E-value=3.8e-10  Score=72.41  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=38.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      ..+++++|++|||||||++++.++.+...+.|........+.++    .+.+|||+|.
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~   62 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG----DFILTDLPGF   62 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec----ceEEEeCCcc
Confidence            37999999999999999999988776554444322112223332    5789999993

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.04  E-value=1.6e-09  Score=67.21  Aligned_cols=56  Identities=18%  Similarity=0.039  Sum_probs=37.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-CcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQE-ESP-EGGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~-t~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      +++++|++|||||||++++..+.+... +.. +.+.....+..  ..+.+.+|||+|++.
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~   59 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLD   59 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCC
Confidence            689999999999999999998876432 211 12211112222  347899999999853

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK15494 era GTPase Era; Provisional

Probab=99.03  E-value=1.5e-09  Score=75.45  Aligned_cols=58  Identities=17%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCC---CCCCCcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQ---EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~---~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ..+++++|+++||||||++++++..+..   ...+|.+.....+..++.  ++.+|||+|+.+
T Consensus        52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~  112 (339)
T PRK15494         52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFE  112 (339)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCC
Confidence            3599999999999999999999877642   222333333445666664  568999999853

>cd01890 LepA LepA subfamily

Probab=99.02  E-value=1.1e-09  Score=68.72  Aligned_cols=62  Identities=21%  Similarity=0.284  Sum_probs=42.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC-------CCCCCCCCCc------c-ee-EEEEE--E---CCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG-------AFLQEESPEG------G-RF-KKEVV--I---DGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~-------~f~~~~~~t~------~-~~-~~~~~--~---~g~~i~~~i~d~~g~~~~~   85 (93)
                      .++++|+.+||||||+.+++..       .+...+.++.      + .+ .+.+.  +   ++..+.+.+|||+|+++|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            5899999999999999999873       1222333321      1 12 12222  2   6778899999999999886


Q ss_pred             CC
Q psy6968          86 PP   87 (93)
Q Consensus        86 ~~   87 (93)
                      .+
T Consensus        82 ~~   83 (179)
T cd01890          82 YE   83 (179)
T ss_pred             HH
Confidence            43

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.00  E-value=1.4e-09  Score=71.52  Aligned_cols=52  Identities=27%  Similarity=0.552  Sum_probs=45.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ |.+++.    ..|+.|    .+.++|..+
T Consensus        15 ~~VLkgi~l~v~~G---evv~iiGpSGSGKSTlL-RclN~L----E~~~~G----~I~i~g~~~   66 (240)
T COG1126          15 KEVLKGISLSVEKG---EVVVIIGPSGSGKSTLL-RCLNGL----EEPDSG----SITVDGEDV   66 (240)
T ss_pred             eEEecCcceeEcCC---CEEEEECCCCCCHHHHH-HHHHCC----cCCCCc----eEEECCEec
Confidence            45689999999999   99999999999999999 999987    567778    788888654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.00  E-value=5.2e-10  Score=69.28  Aligned_cols=62  Identities=13%  Similarity=0.103  Sum_probs=42.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-ccee-EEEEEEC-CeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRF-KKEVVID-GHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++|+.++|||||+++++.+.+...+.++ ...+ ...+..+ +....+.+|||+|++.|..+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~   66 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM   66 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHH
Confidence            4899999999999999999988876543332 1111 1233333 23567889999999877543

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.98  E-value=1.6e-09  Score=72.79  Aligned_cols=53  Identities=30%  Similarity=0.619  Sum_probs=43.6

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+.++++.++++.+|   .-++++|+||||||||+ +.+.+..    .|..|    ++.++|+.+
T Consensus        14 ~~~il~~ls~~i~~G---~i~~iiGpNG~GKSTLL-k~l~g~l----~p~~G----~V~l~g~~i   66 (258)
T COG1120          14 GKPILDDLSFSIPKG---EITGILGPNGSGKSTLL-KCLAGLL----KPKSG----EVLLDGKDI   66 (258)
T ss_pred             CeeEEecceEEecCC---cEEEEECCCCCCHHHHH-HHHhccC----CCCCC----EEEECCCch
Confidence            366789999999999   99999999999999999 7777763    56666    677777644

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=98.98  E-value=2.3e-09  Score=65.68  Aligned_cols=57  Identities=19%  Similarity=0.181  Sum_probs=40.7

Q ss_pred             EECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          29 IVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        29 lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ++|+.|||||||+.++++..+.....|.  .......+.+++  ..+.+|||+|++++..+
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~   59 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPY   59 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCC
Confidence            5899999999999998877544332232  222345667776  46789999999887653

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.97  E-value=3.5e-09  Score=75.95  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=44.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA--FLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ++++++|+++||||||+++++...  +...++.+. +.+...+.++|..  +.+|||+|+.++.
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~  265 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHA  265 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccch
Confidence            899999999999999999998754  344454443 3335677788754  5799999987653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.96  E-value=2.6e-09  Score=69.56  Aligned_cols=52  Identities=29%  Similarity=0.494  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        17 ~~il~~~s~~i~~G---~~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~   68 (218)
T cd03255          17 VQALKGVSLSIEKG---EFVAIVGPSGSGKSTLL-NILGGL----DRPTSG----EVRVDGTDI   68 (218)
T ss_pred             eeEEeeeEEEEcCC---CEEEEEcCCCCCHHHHH-HHHhCC----cCCCce----eEEECCEeh
Confidence            45799999999999   99999999999999999 778776    456667    566766543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>KOG4423|consensus

Probab=98.95  E-value=1.6e-12  Score=83.35  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=56.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeE-EEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHS-HLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~-i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|+.++|+.|+|||+++.||+...|...|..+.+ .| .+...+|++. +++++||.+|||+|.+|..-
T Consensus        26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrV   94 (229)
T KOG4423|consen   26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRV   94 (229)
T ss_pred             hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEE
Confidence            7999999999999999999999999988888855 45 4566677764 69999999999999998643

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.95  E-value=3.2e-09  Score=67.92  Aligned_cols=52  Identities=29%  Similarity=0.513  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    .+.++|..+
T Consensus         5 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~   56 (190)
T TIGR01166         5 PEVLKGLNFAAERG---EVLALLGANGAGKSTLL-LHLNGL----LRPQSG----AVLIDGEPL   56 (190)
T ss_pred             cceecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----eEEECCEEc
Confidence            45789999999999   99999999999999999 888876    456677    667777654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.95  E-value=2.6e-09  Score=71.91  Aligned_cols=53  Identities=25%  Similarity=0.423  Sum_probs=47.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      ...++++++++..+   ..++++|++||||||++ +++++.    ..|+.|    ++.++|+++.
T Consensus        14 ~~av~~v~l~I~~g---ef~vliGpSGsGKTTtL-kMINrL----iept~G----~I~i~g~~i~   66 (309)
T COG1125          14 KKAVDDVNLTIEEG---EFLVLIGPSGSGKTTTL-KMINRL----IEPTSG----EILIDGEDIS   66 (309)
T ss_pred             ceeeeeeeEEecCC---eEEEEECCCCCcHHHHH-HHHhcc----cCCCCc----eEEECCeecc
Confidence            56689999999999   99999999999999999 999988    578888    7888987663

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.93  E-value=4.4e-09  Score=68.24  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~~l~~~sl~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i   65 (214)
T cd03292          14 TAALDGINISISAG---EFVFLVGPSGAGKSTLL-KLIYKE----ELPTSG----TIRVNGQDV   65 (214)
T ss_pred             ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 888876    456677    667777543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.93  E-value=4.2e-09  Score=68.10  Aligned_cols=52  Identities=15%  Similarity=0.380  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~~l~~v~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   64 (205)
T cd03226          13 TEILDDLSLDLYAG---EIIALTGKNGAGKTTLA-KILAGL----IKESSG----SILLNGKPI   64 (205)
T ss_pred             CceeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEh
Confidence            35789999999999   99999999999999999 778776    456677    677777654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.93  E-value=4e-09  Score=68.64  Aligned_cols=51  Identities=22%  Similarity=0.481  Sum_probs=43.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        17 ~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   67 (216)
T TIGR00960        17 PALDNLNFHITKG---EMVFLVGHSGAGKSTFL-KLILGI----EKPTRG----KIRFNGQDL   67 (216)
T ss_pred             eEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEeh
Confidence            4789999999999   99999999999999999 888876    456667    677777644

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.93  E-value=4.2e-09  Score=69.36  Aligned_cols=52  Identities=37%  Similarity=0.625  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~   64 (235)
T cd03261          13 RTVLKGVDLDVRRG---EILAIIGPSGSGKSTLL-RLIVGL----LRPDSG----EVLIDGEDI   64 (235)
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 777776    456667    667777543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.92  E-value=4.1e-09  Score=69.59  Aligned_cols=52  Identities=19%  Similarity=0.419  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        15 ~~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   66 (243)
T TIGR02315        15 KQALKNINLNINPG---EFVAIIGPSGAGKSTLL-RCINRL----VEPSSG----SILLEGTDI   66 (243)
T ss_pred             cceeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCcc----EEEECCEEh
Confidence            45789999999999   99999999999999999 788876    456666    566776543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.92  E-value=4.1e-09  Score=68.89  Aligned_cols=51  Identities=31%  Similarity=0.580  Sum_probs=43.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        19 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   69 (228)
T cd03257          19 KALDDVSFSIKKG---ETLGLVGESGSGKSTLA-RAILGL----LKPTSG----SIIFDGKDL   69 (228)
T ss_pred             eeecCceeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence            5789999999999   99999999999999999 888886    456777    667777543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.92  E-value=4.9e-09  Score=67.93  Aligned_cols=52  Identities=33%  Similarity=0.522  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        14 ~~il~~vs~~i~~G---~~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   65 (211)
T cd03225          14 RPALDDISLTIKKG---EFVLIVGPNGSGKSTLL-RLLNGL----LGPTSG----EVLVDGKDL   65 (211)
T ss_pred             eeeecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEc
Confidence            45789999999999   99999999999999999 788776    456677    667777544

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.92  E-value=4.8e-09  Score=67.68  Aligned_cols=51  Identities=24%  Similarity=0.426  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        11 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~   61 (206)
T TIGR03608        11 KIILDDLNLTIEKG---KMYAIIGESGSGKSTLL-NIIGLL----EKFDSG----QVYLNGKE   61 (206)
T ss_pred             EEEEeceEEEEeCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEE
Confidence            45789999999999   99999999999999999 888776    456777    66777765

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.92  E-value=4.8e-09  Score=68.38  Aligned_cols=52  Identities=23%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   66 (220)
T cd03263          15 KPAVDDLSLNVYKG---EIFGLLGHNGAGKTTTL-KMLTGE----LRPTSG----TAYINGYSI   66 (220)
T ss_pred             ceeecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence            45789999999999   99999999999999999 888886    457777    667777654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.92  E-value=5.5e-09  Score=68.12  Aligned_cols=51  Identities=20%  Similarity=0.417  Sum_probs=42.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   64 (222)
T cd03224          14 QILFGVSLTVPEG---EIVALLGRNGAGKTTLL-KTIMGL----LPPRSG----SIRFDGRDI   64 (222)
T ss_pred             eEeeeeeEEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence            5789999999999   99999999999999999 788876    456777    667776543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.92  E-value=5.2e-09  Score=68.90  Aligned_cols=51  Identities=29%  Similarity=0.619  Sum_probs=43.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|.++
T Consensus        23 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~i   73 (233)
T PRK11629         23 DVLHNVSFSIGEG---EMMAIVGSSGSGKSTLL-HLLGGL----DTPTSG----DVIFNGQPM   73 (233)
T ss_pred             eeEEeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence            5799999999999   99999999999999999 888776    456777    677777543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.92  E-value=5e-09  Score=68.18  Aligned_cols=51  Identities=25%  Similarity=0.470  Sum_probs=43.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        19 ~il~~~sl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   69 (218)
T cd03266          19 QAVDGVSFTVKPG---EVTGLLGPNGAGKTTTL-RMLAGL----LEPDAG----FATVDGFDV   69 (218)
T ss_pred             eeecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCCc----eEEECCEEc
Confidence            5899999999999   99999999999999999 888886    456777    677777655

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.92  E-value=4.5e-09  Score=67.83  Aligned_cols=52  Identities=27%  Similarity=0.489  Sum_probs=43.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~v~~~g~~~   65 (200)
T PRK13540         14 QPLLQQISFHLPAG---GLLHLKGSNGAGKTTLL-KLIAGL----LNPEKG----EILFERQSI   65 (200)
T ss_pred             eeEEeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----eEEECCCcc
Confidence            45789999999999   99999999999999999 788876    456777    677777654

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.91  E-value=4.7e-09  Score=68.18  Aligned_cols=52  Identities=29%  Similarity=0.551  Sum_probs=43.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~   64 (213)
T cd03259          13 VRALDDLSLTVEPG---EFLALLGPSGCGKTTLL-RLIAGL----ERPDSG----EILIDGRDV   64 (213)
T ss_pred             eeeecceeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence            35789999999999   99999999999999999 878776    456677    667777643

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.91  E-value=6.5e-09  Score=66.03  Aligned_cols=52  Identities=29%  Similarity=0.574  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        13 ~~~l~~i~~~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (178)
T cd03229          13 KTVLNDVSLNIEAG---EIVALLGPSGSGKSTLL-RCIAGL----EEPDSG----SILIDGEDL   64 (178)
T ss_pred             eEEEeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 777776    456677    666776544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.91  E-value=4.8e-09  Score=67.98  Aligned_cols=52  Identities=29%  Similarity=0.473  Sum_probs=43.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        13 ~~~l~~~s~~i~~G---~~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (213)
T cd03262          13 FHVLKGIDLTVKKG---EVVVIIGPSGSGKSTLL-RCINLL----EEPDSG----TIIIDGLKL   64 (213)
T ss_pred             eEeecCceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence            35789999999999   99999999999999999 888876    456677    667777644

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.91  E-value=4.4e-09  Score=68.17  Aligned_cols=52  Identities=27%  Similarity=0.539  Sum_probs=43.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~~l~~v~~~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (210)
T cd03269          13 VTALDDISFSVEKG---EIFGLLGPNGAGKTTTI-RMILGI----ILPDSG----EVLFDGKPL   64 (210)
T ss_pred             EEEEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCCch
Confidence            35789999999999   99999999999999999 888876    456677    677777543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.91  E-value=5.9e-09  Score=67.65  Aligned_cols=52  Identities=23%  Similarity=0.424  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        13 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~v~~~g~~~   64 (213)
T cd03301          13 VTALDDLNLDIADG---EFVVLLGPSGCGKTTTL-RMIAGL----EEPTSG----RIYIGGRDV   64 (213)
T ss_pred             eeeeeceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 888876    456667    566666543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.90  E-value=2.7e-09  Score=64.62  Aligned_cols=49  Identities=27%  Similarity=0.511  Sum_probs=40.6

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ++++++.+.++   ..++++|++|+|||||+ +.+.+.    +.|..|    .+.+++..+
T Consensus         1 L~~v~~~i~~g---~~~~i~G~nGsGKStLl-~~l~g~----~~~~~G----~i~~~~~~~   49 (137)
T PF00005_consen    1 LKNVSLEIKPG---EIVAIVGPNGSGKSTLL-KALAGL----LPPDSG----SILINGKDI   49 (137)
T ss_dssp             EEEEEEEEETT---SEEEEEESTTSSHHHHH-HHHTTS----SHESEE----EEEETTEEG
T ss_pred             CCceEEEEcCC---CEEEEEccCCCccccce-eeeccc----cccccc----ccccccccc
Confidence            57889999999   99999999999999999 788776    455666    677777544

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.90  E-value=5.9e-09  Score=68.52  Aligned_cols=51  Identities=31%  Similarity=0.612  Sum_probs=43.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        19 ~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   69 (233)
T cd03258          19 TALKDVSLSVPKG---EIFGIIGRSGAGKSTLI-RCINGL----ERPTSG----SVLVDGTDL   69 (233)
T ss_pred             eeeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence            6889999999999   99999999999999999 777776    456677    677777654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.90  E-value=4.5e-09  Score=69.97  Aligned_cols=52  Identities=27%  Similarity=0.502  Sum_probs=46.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...+++++|++.+|   .++++||.+|+|||||+ |.+.+.    +.|+.|    ++.++|+..
T Consensus        40 ~~aL~disf~i~~G---e~vGiiG~NGaGKSTLl-kliaGi----~~Pt~G----~v~v~G~v~   91 (249)
T COG1134          40 FWALKDISFEIYKG---ERVGIIGHNGAGKSTLL-KLIAGI----YKPTSG----KVKVTGKVA   91 (249)
T ss_pred             EEEecCceEEEeCC---CEEEEECCCCCcHHHHH-HHHhCc----cCCCCc----eEEEcceEe
Confidence            45689999999999   99999999999999999 999998    789988    788888644

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.90  E-value=6e-09  Score=67.65  Aligned_cols=52  Identities=23%  Similarity=0.393  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..+
T Consensus        15 ~~il~~is~~i~~G---~~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~   66 (214)
T TIGR02673        15 VAALHDVSLHIRKG---EFLFLTGPSGAGKTTLL-KLLYGA----LTPSRG----QVRIAGEDV   66 (214)
T ss_pred             ceeecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence            45789999999999   99999999999999999 788876    356667    566776543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.90  E-value=6.4e-09  Score=68.60  Aligned_cols=52  Identities=21%  Similarity=0.371  Sum_probs=43.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~i   65 (236)
T TIGR03864        14 RRALDDVSFTVRPG---EFVALLGPNGAGKSTLF-SLLTRL----YVAQEG----QISVAGHDL   65 (236)
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 888876    456777    677777654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.90  E-value=7.3e-09  Score=66.70  Aligned_cols=52  Identities=29%  Similarity=0.484  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        13 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (198)
T TIGR01189        13 RMLFEGLSFTLNAG---EALQVTGPNGIGKTTLL-RILAGL----LRPDSG----EVRWNGTAL   64 (198)
T ss_pred             EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCEEc
Confidence            35789999999999   99999999999999999 788876    456777    667777654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.89  E-value=6.3e-09  Score=67.92  Aligned_cols=52  Identities=31%  Similarity=0.538  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        17 ~~il~~vs~~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   68 (220)
T cd03293          17 VTALEDISLSVEEG---EFVALVGPSGCGKSTLL-RIIAGL----ERPTSG----EVLVDGEPV   68 (220)
T ss_pred             eEEEeceeEEEeCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 777776    456677    667777543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.89  E-value=8.1e-09  Score=67.48  Aligned_cols=52  Identities=23%  Similarity=0.429  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i   66 (222)
T PRK10908         15 RQALQGVTFHMRPG---EMAFLTGHSGAGKSTLL-KLICGI----ERPSAG----KIWFSGHDI   66 (222)
T ss_pred             CeEEeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            45789999999999   99999999999999999 777776    456677    667777544

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.89  E-value=5.8e-09  Score=68.44  Aligned_cols=51  Identities=16%  Similarity=0.354  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~   63 (230)
T TIGR03410        13 SHILRGVSLEVPKG---EVTCVLGRNGVGKTTLL-KTLMGL----LPVKSG----SIRLDGED   63 (230)
T ss_pred             eEEecceeeEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEE
Confidence            35789999999999   99999999999999999 888887    456677    66777654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.89  E-value=6.7e-09  Score=68.45  Aligned_cols=52  Identities=25%  Similarity=0.484  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|.++
T Consensus        14 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   65 (241)
T cd03256          14 KKALKDVSLSINPG---EFVALIGPSGAGKSTLL-RCLNGL----VEPTSG----SVLIDGTDI   65 (241)
T ss_pred             cEEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCCc----eEEECCEec
Confidence            35789999999999   99999999999999999 777776    356666    566666543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.89  E-value=6.5e-09  Score=67.86  Aligned_cols=52  Identities=23%  Similarity=0.440  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~   64 (220)
T cd03265          13 FEAVRGVSFRVRRG---EIFGLLGPNGAGKTTTI-KMLTTL----LKPTSG----RATVAGHDV   64 (220)
T ss_pred             EEeeeceeEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEec
Confidence            35789999999999   99999999999999999 888886    456667    566666543

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.89  E-value=6.3e-09  Score=68.30  Aligned_cols=52  Identities=19%  Similarity=0.487  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   64 (232)
T cd03218          13 RKVVNGVSLSVKQG---EIVGLLGPNGAGKTTTF-YMIVGL----VKPDSG----KILLDGQDI   64 (232)
T ss_pred             EEeeccceeEecCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence            35789999999999   99999999999999999 888876    456677    666776543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=7.1e-09  Score=69.36  Aligned_cols=52  Identities=21%  Similarity=0.385  Sum_probs=43.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        14 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   65 (255)
T PRK11248         14 KPALEDINLTLESG---ELLVVLGPSGCGKTTLL-NLIAGF----VPYQHG----SITLDGKPV   65 (255)
T ss_pred             eeeEeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            35789999999999   99999999999999999 878776    456677    667777543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.89  E-value=4.9e-09  Score=76.11  Aligned_cols=51  Identities=35%  Similarity=0.527  Sum_probs=44.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++++|   .+++++|++|+|||||+ +.+.+.    |+|+.|    ++.+||.++
T Consensus       349 ~vL~~isl~i~~G---~~vaIvG~SGsGKSTLl-~lL~g~----~~p~~G----~I~i~g~~i  399 (529)
T TIGR02868       349 PVLDGVSLDLPPG---ERVAILGPSGSGKSTLL-MLLTGL----LDPLQG----EVTLDGVSV  399 (529)
T ss_pred             ceeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence            4789999999999   99999999999999999 777777    678888    788888655

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.89  E-value=7.7e-09  Score=66.92  Aligned_cols=52  Identities=29%  Similarity=0.518  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        14 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~v~~~g~~~   65 (204)
T PRK13538         14 RILFSGLSFTLNAG---ELVQIEGPNGAGKTSLL-RILAGL----ARPDAG----EVLWQGEPI   65 (204)
T ss_pred             EEEEecceEEECCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEc
Confidence            35789999999999   99999999999999999 788876    456677    667777654

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.89  E-value=2.4e-08  Score=60.83  Aligned_cols=59  Identities=19%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ++++++|+.|+|||||+.++....+.  ..+.++... +...+.+++  ..+.+|||.|..++.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~   63 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETE   63 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCc
Confidence            68999999999999999888776532  222222222 233445554  467899999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.88  E-value=8.6e-09  Score=65.57  Aligned_cols=51  Identities=27%  Similarity=0.558  Sum_probs=43.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~l~~~~~~i~~G---~~~~l~G~nGsGKStLl-~~i~G~----~~~~~G----~v~~~g~~~   63 (180)
T cd03214          13 TVLDDLSLSIEAG---EIVGILGPNGAGKSTLL-KTLAGL----LKPSSG----EILLDGKDL   63 (180)
T ss_pred             eeEeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            5789999999999   99999999999999999 888886    456777    677887654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.88  E-value=8.8e-09  Score=64.73  Aligned_cols=52  Identities=23%  Similarity=0.492  Sum_probs=43.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~vl~~i~~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~v~~~g~~~   64 (163)
T cd03216          13 VKALDGVSLSVRRG---EVHALLGENGAGKSTLM-KILSGL----YKPDSG----EILVDGKEV   64 (163)
T ss_pred             eEEEeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEC
Confidence            35789999999999   99999999999999999 888886    456677    677777543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.88  E-value=7.5e-09  Score=68.39  Aligned_cols=52  Identities=21%  Similarity=0.478  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   66 (239)
T cd03296          15 FVALDDVSLDIPSG---ELVALLGPSGSGKTTLL-RLIAGL----ERPDSG----TILFGGEDA   66 (239)
T ss_pred             EEeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 777776    456667    566666543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.88  E-value=8.3e-09  Score=67.27  Aligned_cols=51  Identities=31%  Similarity=0.590  Sum_probs=42.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|.++
T Consensus        19 ~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~   69 (221)
T TIGR02211        19 RVLKGVSLSIGKG---EIVAIVGSSGSGKSTLL-HLLGGL----DNPTSG----EVLFNGQSL   69 (221)
T ss_pred             EeEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEh
Confidence            5789999999999   99999999999999999 888776    456677    566776543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.88  E-value=7.8e-09  Score=68.32  Aligned_cols=52  Identities=19%  Similarity=0.391  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        16 ~~~l~~~sl~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   67 (241)
T PRK10895         16 RRVVEDVSLTVNSG---EIVGLLGPNGAGKTTTF-YMVVGI----VPRDAG----NIIIDDEDI   67 (241)
T ss_pred             EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            35789999999999   99999999999999999 888886    456667    666776543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.88  E-value=8.1e-09  Score=69.58  Aligned_cols=51  Identities=27%  Similarity=0.373  Sum_probs=42.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        20 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~   70 (272)
T PRK15056         20 HTALRDASFTVPGG---SIAALVGVNGSGKSTLF-KALMGF----VRLASG----KISILGQP   70 (272)
T ss_pred             cEEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEE
Confidence            35789999999999   99999999999999999 888876    456667    56666654

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.88  E-value=8.3e-09  Score=67.64  Aligned_cols=51  Identities=27%  Similarity=0.518  Sum_probs=42.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        24 ~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~~   74 (228)
T PRK10584         24 SILTGVELVVKRG---ETIALIGESGSGKSTLL-AILAGL----DDGSSG----EVSLVGQPL   74 (228)
T ss_pred             EEEeccEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCe----eEEECCEEc
Confidence            3789999999999   99999999999999999 888886    456667    566666543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.88  E-value=7.8e-09  Score=69.38  Aligned_cols=52  Identities=27%  Similarity=0.524  Sum_probs=43.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        24 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   75 (265)
T TIGR02769        24 APVLTNVSLSIEEG---ETVGLLGRSGCGKSTLA-RLLLGL----EKPAQG----TVSFRGQDL   75 (265)
T ss_pred             eEEeeCceeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEc
Confidence            45789999999999   99999999999999999 888886    467777    677777543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.88  E-value=7.9e-09  Score=70.64  Aligned_cols=52  Identities=21%  Similarity=0.355  Sum_probs=44.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus         6 ~~~l~~vs~~i~~G---e~~~l~G~NGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   57 (302)
T TIGR01188         6 FKAVDGVNFKVREG---EVFGFLGPNGAGKTTTI-RMLTTL----LRPTSG----TARVAGYDV   57 (302)
T ss_pred             eeEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            45789999999999   99999999999999999 888887    467777    677777654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.88  E-value=1.1e-08  Score=64.79  Aligned_cols=51  Identities=24%  Similarity=0.489  Sum_probs=42.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.++   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..+
T Consensus        14 ~~l~~~~~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (173)
T cd03230          14 TALDDISLTVEKG---EIYGLLGPNGAGKTTLI-KIILGL----LKPDSG----EIKVLGKDI   64 (173)
T ss_pred             eeeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence            5789999999999   99999999999999999 888876    456667    667777654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.87  E-value=1.7e-08  Score=63.89  Aligned_cols=64  Identities=16%  Similarity=0.092  Sum_probs=42.9

Q ss_pred             eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-e-EEEEEECCeEEEEEEEecCCCC
Q psy6968          16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-F-KKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ....+.....+++++|++|+|||||+++++...+...+.++.+. . ......++   .+.+|||+|..
T Consensus        10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~   75 (179)
T TIGR03598        10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYG   75 (179)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCc
Confidence            33344445589999999999999999999887655444444331 1 11223333   58899999953

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.87  E-value=7.8e-09  Score=70.18  Aligned_cols=51  Identities=24%  Similarity=0.344  Sum_probs=43.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        21 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~L~Gl----~~p~~G----~i~~~g~~i   71 (286)
T PRK13646         21 QAIHDVNTEFEQG---KYYAIVGQTGSGKSTLI-QNINAL----LKPTTG----TVTVDDITI   71 (286)
T ss_pred             CceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            5899999999999   99999999999999999 888876    467777    677777654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.87  E-value=4.8e-09  Score=69.82  Aligned_cols=49  Identities=37%  Similarity=0.689  Sum_probs=42.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      .+++++++++.+|   ..+.++|++|||||||. |.+.+.    ..|+.|    ++.++|+
T Consensus        21 ~~l~~VS~~i~~G---e~lgivGeSGsGKSTL~-r~l~Gl----~~p~~G----~I~~~G~   69 (252)
T COG1124          21 HALNNVSLEIERG---ETLGIVGESGSGKSTLA-RLLAGL----EKPSSG----SILLDGK   69 (252)
T ss_pred             hhhcceeEEecCC---CEEEEEcCCCCCHHHHH-HHHhcc----cCCCCc----eEEECCc
Confidence            4789999999999   99999999999999999 888886    467777    6777774

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.87  E-value=8.9e-09  Score=67.11  Aligned_cols=52  Identities=25%  Similarity=0.458  Sum_probs=43.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        24 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~i   75 (214)
T PRK13543         24 EPVFGPLDFHVDAG---EALLVQGDNGAGKTTLL-RVLAGL----LHVESG----QIQIDGKTA   75 (214)
T ss_pred             ceeeecceEEECCC---CEEEEEcCCCCCHHHHH-HHHhCC----CCCCCe----eEEECCEEc
Confidence            45789999999999   99999999999999999 888876    466777    677777544

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.87  E-value=9.3e-09  Score=68.42  Aligned_cols=52  Identities=23%  Similarity=0.480  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i   64 (252)
T TIGR03005        13 LTVLDGLNFSVAAG---EKVALIGPSGSGKSTIL-RILMTL----EPIDEG----QIQVEGEQL   64 (252)
T ss_pred             eeEEeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            45789999999999   99999999999999999 888886    456677    667777644

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.87  E-value=5.8e-09  Score=67.72  Aligned_cols=51  Identities=25%  Similarity=0.424  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        12 ~~~l~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~   62 (213)
T cd03235          12 HPVLEDVSFEVKPG---EFLAIVGPNGAGKSTLL-KAILGL----LKPTSG----SIRVFGKP   62 (213)
T ss_pred             EEeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCC----EEEECCcc
Confidence            35789999999999   99999999999999999 888886    456677    66677643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.87  E-value=8e-09  Score=67.97  Aligned_cols=50  Identities=24%  Similarity=0.500  Sum_probs=41.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        14 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~   63 (236)
T cd03219          14 VALDDVSFSVRPG---EIHGLIGPNGAGKTTLF-NLISGF----LRPTSG----SVLFDGED   63 (236)
T ss_pred             EEecCceEEecCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----eEEECCEE
Confidence            4789999999999   99999999999999999 888876    356666    56666654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.87  E-value=8.8e-09  Score=69.24  Aligned_cols=51  Identities=37%  Similarity=0.604  Sum_probs=43.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        27 ~~l~~vsl~i~~G---e~~~i~G~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   77 (267)
T PRK15112         27 EAVKPLSFTLREG---QTLAIIGENGSGKSTLA-KMLAGM----IEPTSG----ELLIDDHPL   77 (267)
T ss_pred             ceeeeeeEEecCC---CEEEEEcCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEEC
Confidence            5789999999999   99999999999999999 888887    567777    667777544

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.87  E-value=7.6e-09  Score=68.78  Aligned_cols=52  Identities=23%  Similarity=0.487  Sum_probs=44.6

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .++.+.++++.+++|   ..++++|++|+|||||+ |.+.+.    .+|+.|    ++.++|.+
T Consensus        16 ~~~aL~~Vnl~I~~G---E~VaiIG~SGaGKSTLL-R~lngl----~d~t~G----~i~~~g~~   67 (258)
T COG3638          16 GHQALKDVNLEINQG---EMVAIIGPSGAGKSTLL-RSLNGL----VDPTSG----EILFNGVQ   67 (258)
T ss_pred             CceeeeeEeEEeCCC---cEEEEECCCCCcHHHHH-HHHhcc----cCCCcc----eEEecccc
Confidence            467789999999999   99999999999999999 888886    578877    66777653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.86  E-value=9.7e-09  Score=65.43  Aligned_cols=50  Identities=26%  Similarity=0.502  Sum_probs=42.5

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~l~~vs~~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (182)
T cd03215          15 AVRDVSFEVRAG---EIVGIAGLVGNGQTELA-EALFGL----RPPASG----EITLDGKPV   64 (182)
T ss_pred             eecceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence            679999999999   99999999999999999 888887    467777    677777544

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.86  E-value=1e-08  Score=65.25  Aligned_cols=59  Identities=19%  Similarity=0.135  Sum_probs=41.0

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ...+++++|++|+|||||+.+++.+.|...+.++.+.-. .+.+......+.+|||+|..
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~l~l~DtpG~~   81 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQ-LINFFEVNDKLRLVDLPGYG   81 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcee-EEEEEecCCeEEEeCCCCCC
Confidence            347999999999999999999998766665655533210 11111123678999999954

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.86  E-value=1.5e-08  Score=72.08  Aligned_cols=57  Identities=23%  Similarity=0.221  Sum_probs=42.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      .+++++|.+|||||||+++++....  ...+..+ .+.+...+.+++  ..+.+|||+|++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~   61 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEP   61 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCC
Confidence            4899999999999999999987653  2333332 233345667777  6789999999987

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.86  E-value=1.2e-08  Score=66.05  Aligned_cols=56  Identities=13%  Similarity=0.133  Sum_probs=43.6

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+.+++++++.+.+|   ..++++|++|+|||||+ +.+.+..... .|+.|    ++.++|..+
T Consensus        19 ~~~il~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~~~~~-~~~~G----~i~i~g~~~   74 (202)
T cd03233          19 KIPILKDFSGVVKPG---EMVLVLGRPGSGCSTLL-KALANRTEGN-VSVEG----DIHYNGIPY   74 (202)
T ss_pred             CceeeeeEEEEECCC---cEEEEECCCCCCHHHHH-HHhcccCCCC-CCcce----EEEECCEEC
Confidence            346789999999999   99999999999999999 8888873210 15566    667777543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.86  E-value=9e-09  Score=67.41  Aligned_cols=56  Identities=21%  Similarity=0.386  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...+. +.|..|    ++.++|..+
T Consensus        13 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~~   69 (227)
T cd03260          13 KHALKDISLDIPKG---EITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEG----EVLLDGKDI   69 (227)
T ss_pred             ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcccccCCCCCe----EEEECCEEh
Confidence            35789999999999   99999999999999999 7888763211 145566    667777543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=1e-08  Score=69.24  Aligned_cols=51  Identities=22%  Similarity=0.376  Sum_probs=42.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        21 ~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~i   71 (280)
T PRK13649         21 RALFDVNLTIEDG---SYTAFIGHTGSGKSTIM-QLLNGL----HVPTQG----SVRVDDTLI   71 (280)
T ss_pred             ceeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            5789999999999   99999999999999999 888876    456667    666777544

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=98.86  E-value=5.2e-09  Score=63.52  Aligned_cols=44  Identities=20%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      |++++|++|||||||+++++.+.+.  +.++.+     +.+.+     .+|||+|+
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-----~~~~~-----~~iDt~G~   45 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-----VEYND-----GAIDTPGE   45 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee-----EEEcC-----eeecCchh
Confidence            7999999999999999999877652  344422     22222     57999997

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=1.1e-08  Score=67.66  Aligned_cols=52  Identities=23%  Similarity=0.363  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   66 (242)
T PRK11124         15 HQALFDITLDCPQG---ETLVLLGPSGAGKSSLL-RVLNLL----EMPRSG----TLNIAGNHF   66 (242)
T ss_pred             eeeEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEec
Confidence            46789999999999   99999999999999999 778776    456677    677777654

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.86  E-value=1.1e-08  Score=67.21  Aligned_cols=51  Identities=24%  Similarity=0.410  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..
T Consensus        20 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~   70 (225)
T PRK10247         20 AKILNNISFSLRAG---EFKLITGPSGCGKSTLL-KIVASL----ISPTSG----TLLFEGED   70 (225)
T ss_pred             ceeeeccEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----eEEECCEE
Confidence            45789999999999   99999999999999999 788876    456677    56666654

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.86  E-value=8.6e-09  Score=69.38  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=43.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        14 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   65 (271)
T PRK13638         14 EPVLKGLNLDFSLS---PVTGLVGANGCGKSTLF-MNLSGL----LRPQKG----AVLWQGKPL   65 (271)
T ss_pred             cccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCcc----EEEECCEEc
Confidence            35789999999999   99999999999999999 888886    456677    667777654

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.85  E-value=1.1e-08  Score=67.71  Aligned_cols=52  Identities=23%  Similarity=0.420  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        16 ~~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   67 (241)
T PRK14250         16 KEILKDISVKFEGG---AIYTIVGPSGAGKSTLI-KLINRL----IDPTEG----SILIDGVDI   67 (241)
T ss_pred             eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEh
Confidence            35789999999999   99999999999999999 888886    356667    677777543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.85  E-value=1.1e-08  Score=68.90  Aligned_cols=52  Identities=27%  Similarity=0.517  Sum_probs=42.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        20 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   71 (269)
T PRK11831         20 RCIFDNISLTVPRG---KITAIMGPSGIGKTTLL-RLIGGQ----IAPDHG----EILFDGENI   71 (269)
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence            34689999999999   99999999999999999 888887    456666    566666543

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1e-08  Score=69.64  Aligned_cols=51  Identities=25%  Similarity=0.521  Sum_probs=43.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        21 ~~l~~vs~~i~~G---e~~~i~G~nGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   71 (287)
T PRK13637         21 KALDNVNIEIEDG---EFVGLIGHTGSGKSTLI-QHLNGL----LKPTSG----KIIIDGVDI   71 (287)
T ss_pred             ceeeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCcc----EEEECCEEC
Confidence            5899999999999   99999999999999999 777776    457777    677777654

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.85  E-value=1.1e-08  Score=66.29  Aligned_cols=52  Identities=21%  Similarity=0.470  Sum_probs=43.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        13 ~~~l~~~~~~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   64 (208)
T cd03268          13 KRVLDDISLHVKKG---EIYGFLGPNGAGKTTTM-KIILGL----IKPDSG----EITFDGKSY   64 (208)
T ss_pred             eEeEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCCcc
Confidence            45789999999999   99999999999999999 778776    356677    677777654

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=1.1e-08  Score=68.10  Aligned_cols=52  Identities=19%  Similarity=0.403  Sum_probs=43.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        18 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   69 (255)
T PRK11300         18 LLAVNNVNLEVREQ---EIVSLIGPNGAGKTTVF-NCLTGF----YKPTGG----TILLRGQHI   69 (255)
T ss_pred             EEEEEeeeeEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----cCCCcc----eEEECCEEC
Confidence            35789999999999   99999999999999999 888886    466777    666776543

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.85  E-value=8.3e-09  Score=77.05  Aligned_cols=52  Identities=33%  Similarity=0.533  Sum_probs=46.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    |.|+.|    ++.+||.++
T Consensus       466 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLl-klL~gl----~~p~~G----~I~idg~~i  517 (686)
T TIGR03797       466 PLILDDVSLQIEPG---EFVAIVGPSGSGKSTLL-RLLLGF----ETPESG----SVFYDGQDL  517 (686)
T ss_pred             ccceeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEEc
Confidence            45789999999999   99999999999999999 888887    788888    788998765

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.85  E-value=1.3e-08  Score=67.43  Aligned_cols=52  Identities=25%  Similarity=0.452  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        14 ~~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   65 (242)
T cd03295          14 KKAVNNLNLEIAKG---EFLVLIGPSGSGKTTTM-KMINRL----IEPTSG----EIFIDGEDI   65 (242)
T ss_pred             ceEeeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCeEc
Confidence            35789999999999   99999999999999999 788776    456667    667777543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.84  E-value=1.3e-08  Score=67.29  Aligned_cols=52  Identities=23%  Similarity=0.433  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~il~~~s~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   65 (240)
T PRK09493         14 TQVLHNIDLNIDQG---EVVVIIGPSGSGKSTLL-RCINKL----EEITSG----DLIVDGLKV   65 (240)
T ss_pred             eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 788776    456677    667777543

>cd01878 HflX HflX subfamily

Probab=98.84  E-value=1.2e-08  Score=65.64  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=38.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCC--CCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQE--ESPEGGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~--~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ..+++++|++|||||||+++++...+...  +.++.......+.+++. ..+.+|||+|..
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~  100 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFI  100 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccc
Confidence            37999999999999999988887654321  22232222234445443 267899999974

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.84  E-value=1.5e-08  Score=67.61  Aligned_cols=56  Identities=29%  Similarity=0.385  Sum_probs=43.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.....+.|+.|    ++.++|.++
T Consensus        16 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~G----~i~~~g~~i   71 (254)
T PRK10418         16 QPLVHGVSLTLQRG---RVLALVGGSGSGKSLTC-AAALGILPAGVRQTAG----RVLLDGKPV   71 (254)
T ss_pred             cceecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCCCCCCCCcCC----EEEECCeec
Confidence            45789999999999   99999999999999999 8888874332223666    566776554

>KOG0058|consensus

Probab=98.84  E-value=5.7e-09  Score=77.71  Aligned_cols=52  Identities=23%  Similarity=0.411  Sum_probs=47.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..+++|||+|.||||++ .++.+.    |+|+.|    ++.+||.++
T Consensus       481 ~~Vlk~lsfti~pG---e~vALVGPSGsGKSTia-sLL~rf----Y~PtsG----~IllDG~~i  532 (716)
T KOG0058|consen  481 VPVLKNLSFTIRPG---EVVALVGPSGSGKSTIA-SLLLRF----YDPTSG----RILLDGVPI  532 (716)
T ss_pred             chhhcCceeeeCCC---CEEEEECCCCCCHHHHH-HHHHHh----cCCCCC----eEEECCeeh
Confidence            56799999999999   99999999999999999 777776    899999    899999876

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=1.3e-08  Score=67.05  Aligned_cols=52  Identities=17%  Similarity=0.354  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        18 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~   69 (237)
T PRK11614         18 IQALHEVSLHINQG---EIVTLIGANGAGKTTLL-GTLCGD----PRATSG----RIVFDGKDI   69 (237)
T ss_pred             ceeeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----eEEECCEec
Confidence            45789999999999   99999999999999999 888876    456777    667777543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.84  E-value=1.4e-08  Score=64.51  Aligned_cols=50  Identities=28%  Similarity=0.587  Sum_probs=42.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        16 ~~l~~i~~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~   65 (178)
T cd03247          16 QVLKNLSLELKQG---EKIALLGRSGSGKSTLL-QLLTGD----LKPQQG----EITLDGVP   65 (178)
T ss_pred             cceEEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCC----EEEECCEE
Confidence            5789999999999   99999999999999999 888876    456667    66777754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.84  E-value=1.3e-08  Score=67.60  Aligned_cols=52  Identities=23%  Similarity=0.406  Sum_probs=42.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   67 (250)
T PRK11264         16 QTVLHGIDLEVKPG---EVVAIIGPSGSGKTTLL-RCINLL----EQPEAG----TIRVGDITI   67 (250)
T ss_pred             eeeeccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEc
Confidence            35789999999999   99999999999999999 777776    456667    566666544

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.84  E-value=6.7e-09  Score=67.82  Aligned_cols=52  Identities=19%  Similarity=0.417  Sum_probs=44.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +..++++++++.++   ..++++|++|||||||+ ..+.+.    ..|..|    .+++|++.+
T Consensus        18 ~~~le~vsL~ia~g---e~vv~lGpSGcGKTTLL-nl~AGf----~~P~~G----~i~l~~r~i   69 (259)
T COG4525          18 RSALEDVSLTIASG---ELVVVLGPSGCGKTTLL-NLIAGF----VTPSRG----SIQLNGRRI   69 (259)
T ss_pred             hhhhhccceeecCC---CEEEEEcCCCccHHHHH-HHHhcC----cCcccc----eEEECCEec
Confidence            34689999999999   99999999999999999 777777    467777    778887755

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.84  E-value=1.3e-08  Score=68.76  Aligned_cols=52  Identities=19%  Similarity=0.376  Sum_probs=44.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        18 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   69 (274)
T PRK13647         18 TKALKGLSLSIPEG---SKTALLGPNGAGKSTLL-LHLNGI----YLPQRG----RVKVMGREV   69 (274)
T ss_pred             CeeeeeEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 888876    467777    677777654

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.84  E-value=1.4e-08  Score=65.93  Aligned_cols=51  Identities=31%  Similarity=0.537  Sum_probs=42.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        16 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   66 (207)
T PRK13539         16 VLFSGLSFTLAAG---EALVLTGPNGSGKTTLL-RLIAGL----LPPAAG----TIKLDGGDI   66 (207)
T ss_pred             EEEeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEeC
Confidence            4789999999999   99999999999999999 778776    456677    677777643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=1.2e-08  Score=68.42  Aligned_cols=51  Identities=25%  Similarity=0.515  Sum_probs=42.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        25 ~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   75 (265)
T PRK10575         25 TLLHPLSLTFPAG---KVTGLIGHNGSGKSTLL-KMLGRH----QPPSEG----EILLDAQPL   75 (265)
T ss_pred             EEEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCC----EEEECCEeh
Confidence            5789999999999   99999999999999999 888886    456677    666776543

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.83  E-value=1.4e-08  Score=65.55  Aligned_cols=52  Identities=31%  Similarity=0.555  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        13 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   64 (201)
T cd03231          13 RALFSGLSFTLAAG---EALQVTGPNGSGKTTLL-RILAGL----SPPLAG----RVLLNGGPL   64 (201)
T ss_pred             ceeeccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence            35689999999999   99999999999999999 888876    456667    566776554

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.83  E-value=1.5e-08  Score=68.30  Aligned_cols=52  Identities=29%  Similarity=0.396  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        37 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~L~Gl----~~p~~G----~i~i~g~~~   88 (269)
T cd03294          37 TVGVNDVSLDVREG---EIFVIMGLSGSGKSTLL-RCINRL----IEPTSG----KVLIDGQDI   88 (269)
T ss_pred             ceEeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEc
Confidence            34689999999999   99999999999999999 778876    456667    666777543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.83  E-value=1.3e-08  Score=66.84  Aligned_cols=50  Identities=26%  Similarity=0.484  Sum_probs=42.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        16 ~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~   65 (234)
T cd03251          16 PVLRDISLDIPAG---ETVALVGPSGSGKSTLV-NLIPRF----YDVDSG----RILIDGHD   65 (234)
T ss_pred             cceeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----ccCCCC----EEEECCEE
Confidence            5789999999999   99999999999999999 788877    456777    56677654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.83  E-value=1.2e-08  Score=69.77  Aligned_cols=52  Identities=31%  Similarity=0.578  Sum_probs=43.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        17 ~~~l~~vsl~i~~G---e~~~l~G~NGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   68 (303)
T TIGR01288        17 KVVVNDLSFTIARG---ECFGLLGPNGAGKSTIA-RMLLGM----ISPDRG----KITVLGEPV   68 (303)
T ss_pred             eEEEcceeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            34789999999999   99999999999999999 888876    456777    677777543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd01894 EngA1 EngA1 subfamily

Probab=98.83  E-value=1.4e-08  Score=61.88  Aligned_cols=56  Identities=23%  Similarity=0.290  Sum_probs=38.7

Q ss_pred             EEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          28 GIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        28 ~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      +++|..|+|||||+++++...  +...+.++ ..........++  ..+.+|||+|.+.+.
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~   59 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDD   59 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCch
Confidence            479999999999998888764  22333333 222334455555  568899999988764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.83  E-value=1.4e-08  Score=67.13  Aligned_cols=51  Identities=20%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..+
T Consensus        16 ~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~   66 (242)
T TIGR03411        16 KALNDLSLYVDPG---ELRVIIGPNGAGKTTMM-DVITGK----TRPDEG----SVLFGGTDL   66 (242)
T ss_pred             EEeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEECCeec
Confidence            5789999999999   99999999999999999 888876    456667    566766543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=1.3e-08  Score=70.86  Aligned_cols=52  Identities=25%  Similarity=0.480  Sum_probs=43.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        18 ~~il~~vsl~i~~G---ei~~iiG~nGsGKSTLl-k~L~Gl----~~p~~G----~I~~~g~~i   69 (343)
T PRK11153         18 IHALNNVSLHIPAG---EIFGVIGASGAGKSTLI-RCINLL----ERPTSG----RVLVDGQDL   69 (343)
T ss_pred             eEEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 888887    457777    677777644

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.83  E-value=1.6e-08  Score=70.07  Aligned_cols=56  Identities=21%  Similarity=0.210  Sum_probs=44.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++|+|++|+|||||+ +.+.+.....+.|+.|    ++.++|..+
T Consensus        20 ~~~l~~vsl~i~~G---e~~~ivG~sGsGKSTLl-~~i~Gl~~~~~~~~~G----~i~~~g~~i   75 (330)
T PRK15093         20 VKAVDRVSMTLTEG---EIRGLVGESGSGKSLIA-KAICGVTKDNWRVTAD----RMRFDDIDL   75 (330)
T ss_pred             EEEEeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHHccCCCCCCCcce----EEEECCEEC
Confidence            34789999999999   99999999999999999 7787775433345666    667777543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.83  E-value=1.5e-08  Score=66.96  Aligned_cols=51  Identities=24%  Similarity=0.473  Sum_probs=42.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        34 ~~il~~vs~~i~~G---e~~~i~G~NGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~   84 (236)
T cd03267          34 VEALKGISFTIEKG---EIVGFIGPNGAGKTTTL-KILSGL----LQPTSG----EVRVAGLV   84 (236)
T ss_pred             eeeeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCEE
Confidence            45789999999999   99999999999999999 888876    456667    56666653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.83  E-value=1.8e-08  Score=63.71  Aligned_cols=51  Identities=31%  Similarity=0.540  Sum_probs=42.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..+
T Consensus        16 ~~l~~~~~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~~   66 (173)
T cd03246          16 PVLRNVSFSIEPG---ESLAIIGPSGSGKSTLA-RLILGL----LRPTSG----RVRLDGADI   66 (173)
T ss_pred             cceeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----eEEECCEEc
Confidence            4789999999999   99999999999999999 788776    456677    667777544

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.83  E-value=1.5e-08  Score=69.24  Aligned_cols=52  Identities=23%  Similarity=0.438  Sum_probs=44.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        15 ~~~l~~is~~i~~G---ei~~l~G~NGaGKTTLl-~~l~Gl----~~~~~G----~i~i~g~~~   66 (301)
T TIGR03522        15 QNALDEVSFEAQKG---RIVGFLGPNGAGKSTTM-KIITGY----LPPDSG----SVQVCGEDV   66 (301)
T ss_pred             EEEEEEeEEEEeCC---eEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            45789999999999   99999999999999999 888876    467777    778888654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1.6e-08  Score=68.73  Aligned_cols=51  Identities=18%  Similarity=0.376  Sum_probs=42.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        25 ~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   75 (289)
T PRK13645         25 KALNNTSLTFKKN---KVTCVIGTTGSGKSTMI-QLTNGL----IISETG----QTIVGDYAI   75 (289)
T ss_pred             ceeeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEc
Confidence            4789999999999   99999999999999999 888876    456667    566666543

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.82  E-value=1.4e-08  Score=71.32  Aligned_cols=52  Identities=29%  Similarity=0.450  Sum_probs=45.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|||||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus         6 ~~~l~~vs~~i~~G---ei~~l~G~sGsGKSTLL-r~L~Gl----~~p~~G----~I~i~G~~i   57 (363)
T TIGR01186         6 KKGVNDADLAIAKG---EIFVIMGLSGSGKSTTV-RMLNRL----IEPTAG----QIFIDGENI   57 (363)
T ss_pred             ceeEEeeEEEEcCC---CEEEEECCCCChHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            34689999999999   99999999999999999 888887    567888    778888654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1.4e-08  Score=69.05  Aligned_cols=52  Identities=23%  Similarity=0.378  Sum_probs=43.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        20 ~~~L~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   71 (290)
T PRK13634         20 RRALYDVNVSIPSG---SYVAIIGHTGSGKSTLL-QHLNGL----LQPTSG----TVTIGERVI   71 (290)
T ss_pred             ccceeeEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            35899999999999   99999999999999999 888876    456777    677777654

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.82  E-value=1.5e-08  Score=67.98  Aligned_cols=51  Identities=25%  Similarity=0.509  Sum_probs=42.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++..
T Consensus        25 ~~il~~isl~i~~G---e~~~I~G~NGsGKSTLl-k~l~Gl----~~p~~G----~i~~~g~~   75 (257)
T PRK11247         25 RTVLNQLDLHIPAG---QFVAVVGRSGCGKSTLL-RLLAGL----ETPSAG----ELLAGTAP   75 (257)
T ss_pred             cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEE
Confidence            35789999999999   99999999999999999 788776    456667    55666644

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1.5e-08  Score=68.84  Aligned_cols=51  Identities=25%  Similarity=0.392  Sum_probs=43.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        21 ~~l~~vsl~i~~G---e~~~iiG~NGaGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   71 (287)
T PRK13641         21 KGLDNISFELEEG---SFVALVGHTGSGKSTLM-QHFNAL----LKPSSG----TITIAGYHI   71 (287)
T ss_pred             cceeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            4799999999999   99999999999999999 777776    467777    677777654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.82  E-value=1.8e-08  Score=66.17  Aligned_cols=52  Identities=29%  Similarity=0.563  Sum_probs=44.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        35 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~~   86 (224)
T cd03220          35 FWALKDVSFEVPRG---ERIGLIGRNGAGKSTLL-RLLAGI----YPPDSG----TVTVRGRVS   86 (224)
T ss_pred             eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            45789999999999   99999999999999999 888776    457777    677887654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.82  E-value=1.4e-08  Score=70.78  Aligned_cols=51  Identities=25%  Similarity=0.506  Sum_probs=44.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ |.+.+.    ..|+.|    ++.++|.++
T Consensus        19 ~~L~~vsl~i~~G---ei~gIiG~sGaGKSTLl-r~I~gl----~~p~~G----~I~i~G~~i   69 (343)
T TIGR02314        19 QALNNVSLHVPAG---QIYGVIGASGAGKSTLI-RCVNLL----ERPTSG----SVIVDGQDL   69 (343)
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            5789999999999   99999999999999999 888887    467777    677887654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.82  E-value=1.4e-08  Score=70.68  Aligned_cols=52  Identities=29%  Similarity=0.552  Sum_probs=44.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        54 ~~~l~~is~~i~~G---ei~gLlGpNGaGKSTLl-~~L~Gl----~~p~~G----~i~i~G~~~  105 (340)
T PRK13536         54 KAVVNGLSFTVASG---ECFGLLGPNGAGKSTIA-RMILGM----TSPDAG----KITVLGVPV  105 (340)
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCce----EEEECCEEC
Confidence            34689999999999   99999999999999999 888887    467777    677777653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1.6e-08  Score=68.39  Aligned_cols=51  Identities=29%  Similarity=0.556  Sum_probs=43.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        18 ~~l~~vsl~i~~G---e~~~i~G~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   68 (277)
T PRK13652         18 EALNNINFIAPRN---SRIAVIGPNGAGKSTLF-RHFNGI----LKPTSG----SVLIRGEPI   68 (277)
T ss_pred             ceeeEeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            4789999999999   99999999999999999 888876    467777    677777644

>KOG0071|consensus

Probab=98.82  E-value=7.7e-09  Score=64.05  Aligned_cols=64  Identities=19%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .+.+++.+|-.++||||++.++..++... ..||.|.....+++  +.+++.+||..||++.+.+++
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~-~ipTvGFnvetVty--kN~kfNvwdvGGqd~iRplWr   79 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVETVTY--KNVKFNVWDVGGQDKIRPLWR   79 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcc-cccccceeEEEEEe--eeeEEeeeeccCchhhhHHHH
Confidence            36899999999999999999988877433 45666643456666  668999999999999887754

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.82  E-value=1.5e-08  Score=66.73  Aligned_cols=51  Identities=31%  Similarity=0.549  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        15 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~   65 (237)
T cd03252          15 PVILDNISLRIKPG---EVVGIVGRSGSGKSTLT-KLIQRF----YVPENG----RVLVDGHD   65 (237)
T ss_pred             ccceeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCee
Confidence            34789999999999   99999999999999999 888776    456667    56666654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.82  E-value=1.8e-08  Score=67.24  Aligned_cols=52  Identities=31%  Similarity=0.482  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~   65 (256)
T TIGR03873        14 RLIVDGVDVTAPPG---SLTGLLGPNGSGKSTLL-RLLAGA----LRPDAG----TVDLAGVDL   65 (256)
T ss_pred             EEEEeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCC----EEEECCEEc
Confidence            45789999999999   99999999999999999 888876    456667    566666543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd04163 Era Era subfamily

Probab=98.81  E-value=3.1e-08  Score=60.47  Aligned_cols=61  Identities=16%  Similarity=0.156  Sum_probs=38.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEES-PEGGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~-~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..+++++|+.|+|||||+.+++...+..... +.................+.+|||.|....
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~   64 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP   64 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence            3789999999999999998887654322111 111111111223333467889999997654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=1.6e-08  Score=68.76  Aligned_cols=51  Identities=20%  Similarity=0.361  Sum_probs=43.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        20 ~~l~~vsl~i~~G---e~v~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   70 (288)
T PRK13643         20 RALFDIDLEVKKG---SYTALIGHTGSGKSTLL-QHLNGL----LQPTEG----KVTVGDIVV   70 (288)
T ss_pred             cceeeeEEEEcCC---CEEEEECCCCChHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            4789999999999   99999999999999999 888886    467777    677777654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=1.8e-08  Score=68.16  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=43.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        23 ~~vl~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~i~g~~i   74 (280)
T PRK13633         23 KLALDDVNLEVKKG---EFLVILGRNGSGKSTIA-KHMNAL----LIPSEG----KVYVDGLDT   74 (280)
T ss_pred             cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEec
Confidence            35899999999999   99999999999999999 888887    456777    667777554

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.81  E-value=1.9e-08  Score=63.52  Aligned_cols=51  Identities=29%  Similarity=0.518  Sum_probs=42.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..+
T Consensus        16 ~~l~~i~~~i~~G---~~~~l~G~nGsGKstLl-~~i~G~----~~~~~G----~i~~~g~~~   66 (171)
T cd03228          16 PVLKDVSLTIKPG---EKVAIVGPSGSGKSTLL-KLLLRL----YDPTSG----EILIDGVDL   66 (171)
T ss_pred             ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCC----EEEECCEEh
Confidence            5789999999999   99999999999999999 888887    456667    566777544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.81  E-value=1.6e-08  Score=70.65  Aligned_cols=51  Identities=20%  Similarity=0.393  Sum_probs=44.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        18 ~~l~~vs~~i~~G---e~~~l~GpsGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~~   68 (353)
T TIGR03265        18 TALKDISLSVKKG---EFVCLLGPSGCGKTTLL-RIIAGL----ERQTAG----TIYQGGRDI   68 (353)
T ss_pred             EEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHCC----CCCCce----EEEECCEEC
Confidence            4688999999999   99999999999999999 888887    467777    778888654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=1.6e-08  Score=70.72  Aligned_cols=52  Identities=27%  Similarity=0.436  Sum_probs=44.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|..+
T Consensus        17 ~~~l~~vsl~i~~G---e~~~llG~sGsGKSTLL-r~iaGl----~~p~~G----~I~~~g~~i   68 (356)
T PRK11650         17 TQVIKGIDLDVADG---EFIVLVGPSGCGKSTLL-RMVAGL----ERITSG----EIWIGGRVV   68 (356)
T ss_pred             CEEEeeeeEEEcCC---CEEEEECCCCCcHHHHH-HHHHCC----CCCCce----EEEECCEEC
Confidence            35688999999999   89999999999999999 888887    457777    777887654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.81  E-value=1.9e-08  Score=67.35  Aligned_cols=51  Identities=33%  Similarity=0.567  Sum_probs=42.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        15 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~p~~G----~i~~~g~~   65 (258)
T PRK13548         15 RTLLDDVSLTLRPG---EVVAILGPNGAGKSTLL-RALSGE----LSPDSG----EVRLNGRP   65 (258)
T ss_pred             eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEE
Confidence            35789999999999   99999999999999999 888886    356667    56666654

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.81  E-value=1.5e-08  Score=60.25  Aligned_cols=58  Identities=26%  Similarity=0.428  Sum_probs=43.0

Q ss_pred             EECCCCCCHHHHHHHHHhCCC-CCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          29 IVGSLASGKSALVHRFMTGAF-LQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        29 lvG~~g~GKtsl~~r~~~~~f-~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ++|+.|+|||||+.++..... .....++..+ +.......+....+.+||+.|+..+..
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   60 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS   60 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHh
Confidence            589999999999988888765 4445555432 345556666788999999999876643

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=1.7e-08  Score=70.55  Aligned_cols=51  Identities=25%  Similarity=0.574  Sum_probs=44.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|..+
T Consensus        20 ~~l~~isl~i~~G---e~~~llGpsGsGKSTLL-r~IaGl----~~p~~G----~I~~~g~~i   70 (351)
T PRK11432         20 TVIDNLNLTIKQG---TMVTLLGPSGCGKTTVL-RLVAGL----EKPTEG----QIFIDGEDV   70 (351)
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHHCC----CCCCce----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    567777    778887654

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.81  E-value=1.8e-08  Score=65.72  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        14 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~   64 (218)
T cd03290          14 LATLSNINIRIPTG---QLTMIVGQVGCGKSSLL-LAILGE----MQTLEG----KVHWSNKN   64 (218)
T ss_pred             CcceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCC----eEEECCcc
Confidence            45789999999999   99999999999999999 888876    356666    56666654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.81  E-value=2.1e-08  Score=66.97  Aligned_cols=52  Identities=25%  Similarity=0.436  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        18 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~   69 (257)
T PRK10619         18 HEVLKGVSLQANAG---DVISIIGSSGSGKSTFL-RCINFL----EKPSEG----SIVVNGQTI   69 (257)
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence            35789999999999   99999999999999999 888886    456667    667777544

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.80  E-value=1.8e-08  Score=69.16  Aligned_cols=52  Identities=23%  Similarity=0.503  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|.++
T Consensus        20 ~~~l~~vsl~i~~G---ei~gllGpNGaGKSTLl-~~l~Gl----~~p~~G----~v~i~G~~~   71 (306)
T PRK13537         20 KLVVDGLSFHVQRG---ECFGLLGPNGAGKTTTL-RMLLGL----THPDAG----SISLCGEPV   71 (306)
T ss_pred             eEEEecceEEEeCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEec
Confidence            35789999999999   99999999999999999 888776    467777    677777654

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.80  E-value=2.2e-08  Score=65.42  Aligned_cols=52  Identities=17%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        18 ~~il~~vs~~i~~G---~~~~I~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~g~~~   69 (220)
T TIGR02982        18 KQVLFDINLEINPG---EIVILTGPSGSGKTTLL-TLIGGL----RSVQEG----SLKVLGQEL   69 (220)
T ss_pred             eeEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEh
Confidence            45799999999999   99999999999999999 777776    456777    677777644

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.80  E-value=1.8e-08  Score=67.63  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        20 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~~   71 (265)
T PRK10253         20 YTVAENLTVEIPDG---HFTAIIGPNGCGKSTLL-RTLSRL----MTPAHG----HVWLDGEHI   71 (265)
T ss_pred             EEEeeecceEECCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----EEEECCEEh
Confidence            35789999999999   99999999999999999 888886    456666    566776543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=98.80  E-value=3.8e-08  Score=70.76  Aligned_cols=59  Identities=20%  Similarity=0.271  Sum_probs=43.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ++++++|.+++|||||+++++....  ...+..+ .+.+...+.++|.  .+.+|||+|++++.
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~  277 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETD  277 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCc
Confidence            8999999999999999999987653  3333333 3333556777774  56899999987654

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=1.9e-08  Score=67.08  Aligned_cols=51  Identities=18%  Similarity=0.380  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        15 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~   65 (255)
T PRK11231         15 KRILNDLSLSLPTG---KITALIGPNGCGKSTLL-KCFARL----LTPQSG----TVFLGDKP   65 (255)
T ss_pred             EEEEeeeeeEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCCc----EEEECCEE
Confidence            35789999999999   99999999999999999 888886    456666    56666654

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.80  E-value=1.9e-08  Score=67.23  Aligned_cols=51  Identities=29%  Similarity=0.386  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        19 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~   69 (258)
T PRK11701         19 RKGCRDVSFDLYPG---EVLGIVGESGSGKTTLL-NALSAR----LAPDAG----EVHYRMRD   69 (258)
T ss_pred             ceeeeeeeEEEeCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCcc
Confidence            35789999999999   99999999999999999 888886    456677    56666654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=2.1e-08  Score=67.75  Aligned_cols=51  Identities=25%  Similarity=0.485  Sum_probs=42.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        16 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   66 (274)
T PRK13644         16 PALENINLVIKKG---EYIGIIGKNGSGKSTLA-LHLNGL----LRPQKG----KVLVSGIDT   66 (274)
T ss_pred             ceeeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEC
Confidence            4799999999999   99999999999999999 888876    356667    566666543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.80  E-value=2.2e-08  Score=65.45  Aligned_cols=51  Identities=33%  Similarity=0.664  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..
T Consensus        13 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~~~~   63 (223)
T TIGR03740        13 QTAVNNISLTVPKN---SVYGLLGPNGAGKSTLL-KMITGI----LRPTSG----EIIFDGHP   63 (223)
T ss_pred             EEEEeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEe
Confidence            45789999999999   99999999999999999 778876    456667    56666654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>KOG0705|consensus

Probab=98.80  E-value=1.8e-09  Score=78.70  Aligned_cols=79  Identities=67%  Similarity=1.120  Sum_probs=69.6

Q ss_pred             CCCCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968           4 SSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ..+.+.+++..+|++.+...+.|+.+||..++|||+|++||+++.+..+..|-.+.|++++.++|+.-.+.+.|-+|..
T Consensus        10 ~~~~dafvnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~   88 (749)
T KOG0705|consen   10 DSIEDAFVNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP   88 (749)
T ss_pred             hhHHHhhccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc
Confidence            4456778999999999999999999999999999999999999998777666677899999999999999999987733

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.80  E-value=2e-08  Score=66.64  Aligned_cols=51  Identities=20%  Similarity=0.362  Sum_probs=42.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-----cceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-----GGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-----~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+..    .|+     .|    ++.++|..+
T Consensus        15 ~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~~----~p~~~~~~~G----~i~~~g~~~   70 (247)
T TIGR00972        15 EALKNINLDIPKN---QVTALIGPSGCGKSTLL-RSLNRMN----DLVPGVRIEG----KVLFDGQDI   70 (247)
T ss_pred             eeecceeEEECCC---CEEEEECCCCCCHHHHH-HHHhccC----CCCcCCCCce----EEEECCEEc
Confidence            5789999999999   99999999999999999 7787763    443     56    677777654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.80  E-value=2.1e-08  Score=67.50  Aligned_cols=52  Identities=29%  Similarity=0.502  Sum_probs=43.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        25 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~sG----~i~~~g~~~   76 (268)
T PRK10419         25 QTVLNNVSLSLKSG---ETVALLGRSGCGKSTLA-RLLVGL----ESPSQG----NVSWRGEPL   76 (268)
T ss_pred             eeeEeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEec
Confidence            45789999999999   99999999999999999 888886    456677    667777543

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.80  E-value=1.9e-08  Score=65.58  Aligned_cols=50  Identities=28%  Similarity=0.464  Sum_probs=42.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        18 ~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~   67 (221)
T cd03244          18 PVLKNISFSIKPG---EKVGIVGRTGSGKSSLL-LALFRL----VELSSG----SILIDGVD   67 (221)
T ss_pred             ccccceEEEECCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCC----EEEECCEE
Confidence            5889999999999   99999999999999999 888876    456666    56666654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=2.2e-08  Score=67.61  Aligned_cols=51  Identities=25%  Similarity=0.445  Sum_probs=43.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..+
T Consensus        16 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~   66 (275)
T PRK13639         16 EALKGINFKAEKG---EMVALLGPNGAGKSTLF-LHFNGI----LKPTSG----EVLIKGEPI   66 (275)
T ss_pred             eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCEEC
Confidence            4789999999999   99999999999999999 788776    456677    677777655

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.80  E-value=2.2e-08  Score=68.48  Aligned_cols=52  Identities=23%  Similarity=0.482  Sum_probs=44.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.+|   ..++++|++|+||||++ +.+.+.    ..|+.|    ++.++|..+
T Consensus        18 ~~~l~~vs~~i~~G---ei~gllG~NGAGKTTll-k~l~gl----~~p~~G----~i~i~G~~~   69 (293)
T COG1131          18 KTALDGVSFEVEPG---EIFGLLGPNGAGKTTLL-KILAGL----LKPTSG----EILVLGYDV   69 (293)
T ss_pred             CEEEeceeEEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEEcCEeC
Confidence            46789999999999   99999999999999999 888877    567777    778877543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=2.1e-08  Score=67.52  Aligned_cols=52  Identities=29%  Similarity=0.518  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        22 ~~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~i   73 (271)
T PRK13632         22 NNALKNVSFEINEG---EYVAILGHNGSGKSTIS-KILTGL----LKPQSG----EIKIDGITI   73 (271)
T ss_pred             ccceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEec
Confidence            35789999999999   99999999999999999 888876    456667    667776544

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.79  E-value=2e-08  Score=66.25  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+...  +.|+.|    ++.++|..
T Consensus        13 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~--~~~~~G----~i~~~g~~   65 (243)
T TIGR01978        13 KEILKGVNLTVKKG---EIHAIMGPNGSGKSTLS-KTIAGHPS--YEVTSG----TILFKGQD   65 (243)
T ss_pred             EEEEeccceEEcCC---CEEEEECCCCCCHHHHH-HHHhCCCC--CCCCcc----eEEECCEe
Confidence            35789999999999   99999999999999999 88877621  245666    56666654

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.79  E-value=1.4e-08  Score=68.43  Aligned_cols=51  Identities=33%  Similarity=0.608  Sum_probs=45.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++|.+.+|   ..+.+||++||||||+. |.+.+.    +.||.|    ++.++|+++
T Consensus        27 ~avd~Vsf~i~~g---e~~glVGESG~GKSTlg-r~i~~L----~~pt~G----~i~f~g~~i   77 (268)
T COG4608          27 KAVDGVSFSIKEG---ETLGLVGESGCGKSTLG-RLILGL----EEPTSG----EILFEGKDI   77 (268)
T ss_pred             EEecceeEEEcCC---CEEEEEecCCCCHHHHH-HHHHcC----cCCCCc----eEEEcCcch
Confidence            5689999999999   99999999999999999 888887    678988    788888764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=2.2e-08  Score=67.30  Aligned_cols=51  Identities=25%  Similarity=0.443  Sum_probs=42.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        23 ~~l~~isl~i~~G---e~~~I~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~~   73 (269)
T PRK13648         23 FTLKDVSFNIPKG---QWTSIVGHNGSGKSTIA-KLMIGI----EKVKSG----EIFYNNQAI   73 (269)
T ss_pred             cceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            3789999999999   99999999999999999 888887    456677    667777543

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.79  E-value=1.6e-08  Score=74.38  Aligned_cols=52  Identities=23%  Similarity=0.388  Sum_probs=45.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    .+.+||.++
T Consensus       354 ~~il~~i~l~i~~G---e~iaIvG~SGsGKSTLl-~lL~gl----~~p~~G----~I~idg~~i  405 (592)
T PRK10790        354 NLVLQNINLSVPSR---GFVALVGHTGSGKSTLA-SLLMGY----YPLTEG----EIRLDGRPL  405 (592)
T ss_pred             CceeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCc----eEEECCEEh
Confidence            35789999999999   99999999999999999 888887    678878    788888755

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.79  E-value=1.8e-08  Score=66.39  Aligned_cols=49  Identities=22%  Similarity=0.539  Sum_probs=40.2

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus         1 l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   49 (230)
T TIGR01184         1 LKGVNLTIQQG---EFISLIGHSGCGKSTLL-NLISGL----AQPTSG----GVILEGKQI   49 (230)
T ss_pred             CCceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence            35788999999   99999999999999999 888877    456677    667777543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.79  E-value=2.1e-08  Score=66.34  Aligned_cols=52  Identities=29%  Similarity=0.497  Sum_probs=42.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.+|   ..++++|++|||||||+ ..+.+.    -.|+.+    .+.++|..+
T Consensus        18 ~~~L~~v~l~i~~G---e~vaI~GpSGSGKSTLL-niig~l----d~pt~G----~v~i~g~d~   69 (226)
T COG1136          18 VEALKDVNLEIEAG---EFVAIVGPSGSGKSTLL-NLLGGL----DKPTSG----EVLINGKDL   69 (226)
T ss_pred             eEecccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCc----eEEECCEEc
Confidence            35689999999999   99999999999999999 777766    356777    667777543

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.79  E-value=2e-08  Score=70.57  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=43.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        17 ~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLL-~~iaGl----~~p~~G----~I~~~g~~i   67 (369)
T PRK11000         17 VISKDINLDIHEG---EFVVFVGPSGCGKSTLL-RMIAGL----EDITSG----DLFIGEKRM   67 (369)
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    457777    677777654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.79  E-value=2.2e-08  Score=65.27  Aligned_cols=51  Identities=27%  Similarity=0.555  Sum_probs=42.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      +.+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..
T Consensus        17 ~~~l~~i~~~i~~G---~~~~i~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~   67 (220)
T cd03245          17 IPALDNVSLTIRAG---EKVAIIGRVGSGKSTLL-KLLAGL----YKPTSG----SVLLDGTD   67 (220)
T ss_pred             cccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----eEEECCEE
Confidence            34789999999999   99999999999999999 788776    356666    56666654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.79  E-value=2.2e-08  Score=65.64  Aligned_cols=55  Identities=18%  Similarity=0.404  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.++   ..++++|++|+|||||+ +.+.+.... +.|+.|    ++.++|..+
T Consensus        20 ~~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-k~l~G~~~~-~~~~~G----~i~~~g~~~   74 (226)
T cd03234          20 ARILNDVSLHVESG---QVMAILGSSGSGKTTLL-DAISGRVEG-GGTTSG----QILFNGQPR   74 (226)
T ss_pred             cccccCceEEEcCC---eEEEEECCCCCCHHHHH-HHHhCccCC-CCCCce----EEEECCEEC
Confidence            56789999999999   99999999999999999 788776321 125666    666776543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.78  E-value=2.5e-08  Score=65.61  Aligned_cols=52  Identities=27%  Similarity=0.480  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++.++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..+
T Consensus        14 ~~~l~~i~~~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~v~~~g~~~   65 (236)
T cd03253          14 RPVLKDVSFTIPAG---KKVAIVGPSGSGKSTIL-RLLFRF----YDVSSG----SILIDGQDI   65 (236)
T ss_pred             CceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----EEEECCEEh
Confidence            34789999999999   99999999999999999 888776    456667    566776543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.78  E-value=1.5e-08  Score=74.30  Aligned_cols=52  Identities=29%  Similarity=0.544  Sum_probs=45.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +..++++++.+++|   .++++||++|+||||++ +++.+.    |+|..|    .+.+||.++
T Consensus       342 ~~vl~~is~~i~~G---e~vaiVG~sGsGKSTl~-~LL~r~----~~~~~G----~I~idg~dI  393 (567)
T COG1132         342 KPVLKDISFSIEPG---EKVAIVGPSGSGKSTLI-KLLLRL----YDPTSG----EILIDGIDI  393 (567)
T ss_pred             CccccCceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCC----eEEECCEeh
Confidence            46789999999999   99999999999999999 888887    678777    677788665

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.78  E-value=2.3e-08  Score=65.94  Aligned_cols=50  Identities=26%  Similarity=0.497  Sum_probs=42.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..
T Consensus        17 ~~l~~i~~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~g~~   66 (238)
T cd03249          17 PILKGLSLTIPPG---KTVALVGSSGCGKSTVV-SLLERF----YDPTSG----EILLDGVD   66 (238)
T ss_pred             cceeceEEEecCC---CEEEEEeCCCCCHHHHH-HHHhcc----CCCCCC----EEEECCEe
Confidence            4789999999999   99999999999999999 888886    456677    66777754

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.78  E-value=1.5e-08  Score=75.88  Aligned_cols=52  Identities=29%  Similarity=0.560  Sum_probs=45.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    |.|+.|    ++.+||.++
T Consensus       492 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLl-klL~gl----~~p~~G----~I~idg~~i  543 (710)
T TIGR03796       492 PPLIENFSLTLQPG---QRVALVGGSGSGKSTIA-KLVAGL----YQPWSG----EILFDGIPR  543 (710)
T ss_pred             CCcccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEeH
Confidence            45789999999999   99999999999999999 888887    678888    788888654

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.78  E-value=1.4e-08  Score=74.43  Aligned_cols=52  Identities=25%  Similarity=0.448  Sum_probs=45.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++++|   .+++++|++|+|||||+ +.+.+.    ++|..|    ++.+||.++
T Consensus       356 ~~il~~i~l~i~~G---~~~aIvG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~g~~i  407 (582)
T PRK11176        356 VPALRNINFKIPAG---KTVALVGRSGSGKSTIA-NLLTRF----YDIDEG----EILLDGHDL  407 (582)
T ss_pred             CccccCceEEeCCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCc----eEEECCEEh
Confidence            34789999999999   99999999999999999 888887    678877    788888655

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=2.6e-08  Score=68.83  Aligned_cols=51  Identities=22%  Similarity=0.303  Sum_probs=43.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        40 ~~L~~vsl~i~~G---e~~~I~G~nGsGKSTLl-~~L~Gl----~~p~~G----~I~i~g~~~   90 (320)
T PRK13631         40 VALNNISYTFEKN---KIYFIIGNSGSGKSTLV-THFNGL----IKSKYG----TIQVGDIYI   90 (320)
T ss_pred             cceeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEECCEEc
Confidence            4899999999999   99999999999999999 888877    467777    677776544

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.78  E-value=1.6e-08  Score=75.76  Aligned_cols=52  Identities=27%  Similarity=0.484  Sum_probs=45.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    |.|+.|    ++.+||.++
T Consensus       487 ~~iL~~isl~i~~G---~~vaIvG~SGsGKSTLl-klL~gl----~~p~~G----~I~idg~~i  538 (708)
T TIGR01193       487 SNILSDISLTIKMN---SKTTIVGMSGSGKSTLA-KLLVGF----FQARSG----EILLNGFSL  538 (708)
T ss_pred             CcceeceeEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCc----EEEECCEEH
Confidence            45789999999999   99999999999999999 888887    678888    788888654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.78  E-value=2.7e-08  Score=64.07  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=44.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.++   ..++++|++|+|||||+ +.+.+..+  +.|+.|    ++.++|+.+
T Consensus        22 ~~~l~~~~~~i~~G---e~~~l~G~nGsGKStLl-~~i~Gl~~--~~~~~G----~i~~~g~~~   75 (194)
T cd03213          22 KQLLKNVSGKAKPG---ELTAIMGPSGAGKSTLL-NALAGRRT--GLGVSG----EVLINGRPL   75 (194)
T ss_pred             ccceecceEEEcCC---cEEEEECCCCCCHHHHH-HHHhCCCC--CCCCce----EEEECCEeC
Confidence            45889999999999   99999999999999999 88887631  256667    677777654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.78  E-value=3.9e-08  Score=70.95  Aligned_cols=57  Identities=16%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ..+++++|.++||||||+++++...+  ...+..+ .+.+...+.+++..+  .+|||+|..
T Consensus       211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~  270 (472)
T PRK03003        211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLR  270 (472)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCcc
Confidence            48999999999999999999998754  2233333 233355677788655  689999964

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=2.7e-08  Score=67.47  Aligned_cols=52  Identities=21%  Similarity=0.409  Sum_probs=44.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        19 ~~~l~~vs~~i~~G---e~~~i~G~nGaGKSTLl-~~i~Gl----~~p~~G----~i~i~g~~~   70 (283)
T PRK13636         19 THALKGININIKKG---EVTAILGGNGAGKSTLF-QNLNGI----LKPSSG----RILFDGKPI   70 (283)
T ss_pred             CeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCcc----EEEECCEEC
Confidence            34889999999999   99999999999999999 888887    456777    677777654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.78  E-value=2.1e-08  Score=73.70  Aligned_cols=51  Identities=29%  Similarity=0.489  Sum_probs=43.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++++|   .+++++|++|+|||||+ +.+.+.    | |+.|    ++.+||.++
T Consensus       363 ~~vL~~i~l~i~~G---~~vaIvG~SGsGKSTL~-~lL~g~----~-p~~G----~I~i~g~~i  413 (588)
T PRK11174        363 KTLAGPLNFTLPAG---QRIALVGPSGAGKTSLL-NALLGF----L-PYQG----SLKINGIEL  413 (588)
T ss_pred             CeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----C-CCCc----EEEECCEec
Confidence            45789999999999   99999999999999999 788776    6 6677    788888654

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.77  E-value=2.3e-08  Score=65.48  Aligned_cols=50  Identities=24%  Similarity=0.523  Sum_probs=41.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..
T Consensus        17 ~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~   66 (229)
T cd03254          17 PVLKDINFSIKPG---ETVAIVGPTGAGKTTLI-NLLMRF----YDPQKG----QILIDGID   66 (229)
T ss_pred             ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCEe
Confidence            4789999999999   89999999999999999 888776    345666    56666644

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=2.7e-08  Score=67.39  Aligned_cols=51  Identities=27%  Similarity=0.449  Sum_probs=43.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        21 ~~l~~vsl~i~~G---e~~~i~G~nGaGKSTLl-~~i~G~----~~p~~G----~i~~~g~~i   71 (279)
T PRK13635         21 YALKDVSFSVYEG---EWVAIVGHNGSGKSTLA-KLLNGL----LLPEAG----TITVGGMVL   71 (279)
T ss_pred             cceeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            4789999999999   99999999999999999 777777    456777    677777654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.77  E-value=2.1e-08  Score=66.68  Aligned_cols=49  Identities=31%  Similarity=0.371  Sum_probs=40.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|.
T Consensus        17 ~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~   65 (253)
T TIGR02323        17 KGCRDVSFDLYPG---EVLGIVGESGSGKSTLL-GCLAGR----LAPDHG----TATYIMR   65 (253)
T ss_pred             eEeecceEEEeCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEEecc
Confidence            5689999999999   99999999999999999 888887    456666    5555543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.77  E-value=2.7e-08  Score=65.50  Aligned_cols=52  Identities=23%  Similarity=0.491  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++.++++.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..+
T Consensus        13 ~~il~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~l~g~----~~~~~G----~i~~~g~~~   64 (232)
T cd03300          13 FVALDGVSLDIKEG---EFFTLLGPSGCGKTTLL-RLIAGF----ETPTSG----EILLDGKDI   64 (232)
T ss_pred             eeeeccceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 888776    456667    667776543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.77  E-value=1.9e-08  Score=73.09  Aligned_cols=51  Identities=25%  Similarity=0.497  Sum_probs=44.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++.++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       336 ~il~~i~l~i~~G---~~~~ivG~sGsGKSTL~-~ll~g~----~~~~~G----~I~~~g~~i  386 (529)
T TIGR02857       336 PALRPVSFTVPPG---ERVALVGPSGAGKSTLL-NLLLGF----VDPTEG----SIAVNGVPL  386 (529)
T ss_pred             ccccceeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEeh
Confidence            5789999999999   99999999999999999 888887    678877    778888654

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.77  E-value=2.8e-08  Score=69.53  Aligned_cols=51  Identities=20%  Similarity=0.438  Sum_probs=43.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        16 ~~l~~isl~i~~G---e~~~llGpsGsGKSTLL-r~IaGl----~~p~~G----~I~i~g~~i   66 (353)
T PRK10851         16 QVLNDISLDIPSG---QMVALLGPSGSGKTTLL-RIIAGL----EHQTSG----HIRFHGTDV   66 (353)
T ss_pred             EEEEEeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            4789999999999   99999999999999999 888887    467777    677777654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=3.1e-08  Score=68.54  Aligned_cols=55  Identities=20%  Similarity=0.238  Sum_probs=43.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ +.+.+.....-.++.|    ++.++|+++
T Consensus        21 ~~l~~vsl~i~~G---e~~~lvG~sGsGKSTL~-~~l~Gll~~~~~~~~G----~i~~~G~~i   75 (326)
T PRK11022         21 RAVDRISYSVKQG---EVVGIVGESGSGKSVSS-LAIMGLIDYPGRVMAE----KLEFNGQDL   75 (326)
T ss_pred             EEEeeeEEEECCC---CEEEEECCCCChHHHHH-HHHHcCCCCCCCCcce----EEEECCEEC
Confidence            4799999999999   99999999999999999 7777764322124556    677777654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.77  E-value=1.4e-08  Score=67.75  Aligned_cols=44  Identities=23%  Similarity=0.481  Sum_probs=38.0

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      -+.++.+.+|+++++   .+.+++|+||+|||||+ +++++.    +.|+.+
T Consensus        43 gk~iL~~isW~V~~g---e~W~I~G~NGsGKTTLL-~ll~~~----~~pssg   86 (257)
T COG1119          43 GKKILGDLSWQVNPG---EHWAIVGPNGAGKTTLL-SLLTGE----HPPSSG   86 (257)
T ss_pred             CEeeccccceeecCC---CcEEEECCCCCCHHHHH-HHHhcc----cCCCCC
Confidence            477899999999999   99999999999999999 888775    455544

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.76  E-value=2.1e-08  Score=65.60  Aligned_cols=50  Identities=32%  Similarity=0.543  Sum_probs=41.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        28 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~   77 (226)
T cd03248          28 LVLQDVSFTLHPG---EVTALVGPSGSGKSTVV-ALLENF----YQPQGG----QVLLDGKP   77 (226)
T ss_pred             ccccceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCc----EEEECCCc
Confidence            4789999999999   99999999999999999 888876    456666    56666653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.76  E-value=3.6e-08  Score=65.11  Aligned_cols=50  Identities=24%  Similarity=0.455  Sum_probs=42.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..++++++++.++   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        13 ~~l~~is~~i~~G---e~~~i~G~nG~GKStLl-~~l~G~----~~p~~G----~v~i~g~~   62 (235)
T cd03299          13 FKLKNVSLEVERG---DYFVILGPTGSGKSVLL-ETIAGF----IKPDSG----KILLNGKD   62 (235)
T ss_pred             ceeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCEE
Confidence            3689999999999   99999999999999999 888876    467777    56666654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=3.2e-08  Score=63.64  Aligned_cols=49  Identities=22%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        16 l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~i   64 (195)
T PRK13541         16 LFDLSITFLPS---AITYIKGANGCGKSSLL-RMIAGI----MQPSSG----NIYYKNCNI   64 (195)
T ss_pred             EEEEEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCccc
Confidence            33499999999   99999999999999999 888776    456677    677777544

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.76  E-value=2.3e-08  Score=64.04  Aligned_cols=53  Identities=19%  Similarity=0.386  Sum_probs=43.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      ..++++.++.+.+|   ..+++.|++|||||+|+ +.+...    ..|+.|    ++.+.|+++.
T Consensus        16 a~il~~isl~v~~G---e~iaitGPSG~GKStll-k~va~L----isp~~G----~l~f~Ge~vs   68 (223)
T COG4619          16 AKILNNISLSVRAG---EFIAITGPSGCGKSTLL-KIVASL----ISPTSG----TLLFEGEDVS   68 (223)
T ss_pred             CeeecceeeeecCC---ceEEEeCCCCccHHHHH-HHHHhc----cCCCCc----eEEEcCcccc
Confidence            56789999999999   99999999999999999 555555    467777    6777777653

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.76  E-value=2.2e-08  Score=74.90  Aligned_cols=52  Identities=27%  Similarity=0.529  Sum_probs=45.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    |.|+.|    ++.+||.++
T Consensus       478 ~~vL~~i~l~i~~G---~~iaIvG~sGsGKSTLl-klL~gl----~~p~~G----~I~idg~~l  529 (694)
T TIGR03375       478 TPALDNVSLTIRPG---EKVAIIGRIGSGKSTLL-KLLLGL----YQPTEG----SVLLDGVDI  529 (694)
T ss_pred             ccceeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEh
Confidence            34789999999999   99999999999999999 888887    788888    788888654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.3e-08  Score=64.56  Aligned_cols=57  Identities=30%  Similarity=0.486  Sum_probs=46.6

Q ss_pred             cCCCCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           3 MSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+.++.+|.+.+|++.++   .-+.|.|++|+|||||+ |.+.+.    -.|..|    ++.+++..+
T Consensus        10 ~~R~e~~lf~~L~f~l~~G---e~~~i~G~NG~GKTtLL-RilaGL----l~p~~G----~v~~~~~~i   66 (209)
T COG4133          10 CERGERTLFSDLSFTLNAG---EALQITGPNGAGKTTLL-RILAGL----LRPDAG----EVYWQGEPI   66 (209)
T ss_pred             hccCcceeecceeEEEcCC---CEEEEECCCCCcHHHHH-HHHHcc----cCCCCC----eEEecCCCC
Confidence            3455678899999999999   99999999999999999 999998    456677    555555443

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=3.2e-08  Score=66.96  Aligned_cols=51  Identities=31%  Similarity=0.504  Sum_probs=43.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        21 ~~l~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i   71 (279)
T PRK13650         21 YTLNDVSFHVKQG---EWLSIIGHNGSGKSTTV-RLIDGL----LEAESG----QIIIDGDLL   71 (279)
T ss_pred             eeeeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            3789999999999   99999999999999999 777776    467777    677777654

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.76  E-value=1.8e-08  Score=75.72  Aligned_cols=51  Identities=29%  Similarity=0.506  Sum_probs=45.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   .+++++|++|+|||||+ +.+.+.    |+|+.|    ++.+||.++
T Consensus       495 ~vL~~isl~i~~G---e~vaIvG~SGsGKSTLl-~lL~gl----~~p~~G----~I~idg~~i  545 (711)
T TIGR00958       495 PVLKGLTFTLHPG---EVVALVGPSGSGKSTVA-ALLQNL----YQPTGG----QVLLDGVPL  545 (711)
T ss_pred             ccccCceEEEcCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----EEEECCEEH
Confidence            5789999999999   99999999999999999 888887    678888    788888765

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.76  E-value=3.2e-08  Score=65.83  Aligned_cols=56  Identities=20%  Similarity=0.343  Sum_probs=42.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..|..|    ++.++|.++
T Consensus        17 ~~~l~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G----~i~~~g~~i   73 (253)
T PRK14267         17 NHVIKGVDLKIPQN---GVFALMGPSGCGKSTLL-RTFNRLLELNEEARVEG----EVRLFGRNI   73 (253)
T ss_pred             eeeeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCcccCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 7887763211 012356    677777654

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.76  E-value=3.5e-08  Score=65.21  Aligned_cols=52  Identities=23%  Similarity=0.489  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        13 ~~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~i~g~~~   64 (237)
T TIGR00968        13 FQALDDVNLEVPTG---SLVALLGPSGSGKSTLL-RIIAGL----EQPDSG----RIRLNGQDA   64 (237)
T ss_pred             eeeeeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 777776    456666    566776543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.76  E-value=4.1e-08  Score=60.62  Aligned_cols=49  Identities=27%  Similarity=0.504  Sum_probs=41.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.+++.
T Consensus        14 ~~l~~~~~~~~~G---e~~~i~G~nGsGKStLl-~~l~G~----~~~~~G----~i~~~~~   62 (144)
T cd03221          14 LLLKDISLTINPG---DRIGLVGRNGAGKSTLL-KLIAGE----LEPDEG----IVTWGST   62 (144)
T ss_pred             eEEEeeEEEECCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCce----EEEECCe
Confidence            5789999999999   99999999999999999 888876    456677    6777764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.75  E-value=3e-08  Score=70.44  Aligned_cols=52  Identities=25%  Similarity=0.537  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        16 ~~vL~~vs~~i~~G---eiv~liGpNGaGKSTLL-k~LaGl----l~p~sG----~I~l~G~~i   67 (402)
T PRK09536         16 TTVLDGVDLSVREG---SLVGLVGPNGAGKTTLL-RAINGT----LTPTAG----TVLVAGDDV   67 (402)
T ss_pred             EEEEEeeEEEECCC---CEEEEECCCCchHHHHH-HHHhcC----CCCCCc----EEEECCEEc
Confidence            45789999999999   99999999999999999 888876    457777    677777543

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.75  E-value=3e-08  Score=69.90  Aligned_cols=51  Identities=24%  Similarity=0.598  Sum_probs=43.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        28 ~~l~~vsl~i~~G---e~~~LlGpsGsGKSTLL-r~IaGl----~~p~~G----~I~~~g~~i   78 (375)
T PRK09452         28 EVISNLDLTINNG---EFLTLLGPSGCGKTTVL-RLIAGF----ETPDSG----RIMLDGQDI   78 (375)
T ss_pred             EEEeeeEEEEeCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            4688999999999   99999999999999999 888887    467777    777887654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.75  E-value=2.9e-08  Score=65.31  Aligned_cols=53  Identities=28%  Similarity=0.413  Sum_probs=40.0

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ++++++++.+|   ..++++|++|+|||||+ +.+.+...+...+..|    ++.++|..+
T Consensus         2 l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~G----~i~~~g~~~   54 (230)
T TIGR02770         2 VQDLNLSLKRG---EVLALVGESGSGKSLTC-LAILGLLPPGLTQTSG----EILLDGRPL   54 (230)
T ss_pred             ccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcCCCCccCcccc----EEEECCEec
Confidence            57889999999   99999999999999999 8888773211001566    566777544

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd01898 Obg Obg subfamily

Probab=98.75  E-value=3.8e-08  Score=61.03  Aligned_cols=56  Identities=18%  Similarity=0.096  Sum_probs=34.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCC-CCC-CCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQ-EES-PEGGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~-~t~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      .|+++|++|||||||++++....... .+. ++.......+.+++. ..+.+|||+|+.
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~   59 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLI   59 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCccc
Confidence            48999999999999998877543211 111 111111112334432 478999999974

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.75  E-value=2.6e-08  Score=73.22  Aligned_cols=52  Identities=21%  Similarity=0.496  Sum_probs=45.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       353 ~~il~~i~~~i~~G---~~~aivG~sGsGKSTL~-~ll~g~----~~p~~G----~I~i~g~~i  404 (574)
T PRK11160        353 QPVLKGLSLQIKAG---EKVALLGRTGCGKSTLL-QLLTRA----WDPQQG----EILLNGQPI  404 (574)
T ss_pred             CcceecceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEEh
Confidence            35789999999999   99999999999999999 888887    678888    788888754

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.75  E-value=3.3e-08  Score=66.57  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=42.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.....+ .|+.|    ++.++|.++
T Consensus        27 ~il~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G----~v~~~g~~i   82 (269)
T PRK14259         27 EAVKNVFCDIPRG---KVTALIGPSGCGKSTVL-RSLNRMNDLIEGCSLKG----RVLFDGTDL   82 (269)
T ss_pred             EEEcceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence            5789999999999   99999999999999999 77877632111 14566    667777654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.75  E-value=1.8e-08  Score=75.79  Aligned_cols=51  Identities=25%  Similarity=0.522  Sum_probs=45.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++.++.+++|   .+++++|.+|||||||+ +.+.+.    |.|+.|    ++.+||.++
T Consensus       487 ~vL~~isL~I~~G---e~vaIvG~SGsGKSTL~-KLL~gl----y~p~~G----~I~~dg~dl  537 (709)
T COG2274         487 PVLEDLSLEIPPG---EKVAIVGRSGSGKSTLL-KLLLGL----YKPQQG----RILLDGVDL  537 (709)
T ss_pred             chhhceeEEeCCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEeH
Confidence            4689999999999   99999999999999999 888888    788888    788888654

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.3e-08  Score=67.89  Aligned_cols=49  Identities=14%  Similarity=0.254  Sum_probs=41.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|.
T Consensus        21 ~~l~~vsl~i~~G---e~v~iiG~nGsGKSTLl-~~L~Gl----~~p~~G----~i~~~g~   69 (305)
T PRK13651         21 KALDNVSVEINQG---EFIAIIGQTGSGKTTFI-EHLNAL----LLPDTG----TIEWIFK   69 (305)
T ss_pred             cceeeeEEEEeCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc----EEEEece
Confidence            4799999999999   99999999999999999 888886    456667    5566554

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.9e-08  Score=68.13  Aligned_cols=52  Identities=35%  Similarity=0.521  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++|+|++|+|||||+ +.+.+..    .|+.|    ++.++|..+
T Consensus        28 ~~~l~~vsl~i~~G---e~~~IvG~sGsGKSTLl-~~l~gl~----~p~~G----~i~~~g~~l   79 (327)
T PRK11308         28 VKALDGVSFTLERG---KTLAVVGESGCGKSTLA-RLLTMIE----TPTGG----ELYYQGQDL   79 (327)
T ss_pred             eeEEeeeEEEECCC---CEEEEECCCCCcHHHHH-HHHHcCC----CCCCc----EEEECCEEc
Confidence            35789999999999   99999999999999999 7777763    45666    677777543

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.74  E-value=4e-08  Score=66.46  Aligned_cols=52  Identities=17%  Similarity=0.397  Sum_probs=42.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--------cceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--------GGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--------~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++.+.+|   ..++++|++|+|||||+ +.+.+..    .|.        .|    ++.++|..+
T Consensus        14 ~~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~laG~~----~p~~~~~~~~~~G----~i~~~g~~~   73 (272)
T PRK13547         14 RAILRDLSLRIEPG---RVTALLGRNGAGKSTLL-KALAGDL----TGGGAPRGARVTG----DVTLNGEPL   73 (272)
T ss_pred             EeEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCC----CCcccccccCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 8888773    343        45    677777644

>cd01895 EngA2 EngA2 subfamily

Probab=98.74  E-value=8.5e-08  Score=59.09  Aligned_cols=58  Identities=19%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|+.|+|||||+.+++...+..  ....+ ...+...+..++..  +.+|||+|..+.
T Consensus         3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~   63 (174)
T cd01895           3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRK   63 (174)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccc
Confidence            789999999999999998888765321  12222 22223445566654  569999997654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.2e-08  Score=70.25  Aligned_cols=50  Identities=30%  Similarity=0.428  Sum_probs=42.9

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        43 ~L~~isl~i~~G---ei~~LvG~NGsGKSTLL-r~I~Gl----~~p~sG----~I~i~G~~i   92 (400)
T PRK10070         43 GVKDASLAIEEG---EIFVIMGLSGSGKSTMV-RLLNRL----IEPTRG----QVLIDGVDI   92 (400)
T ss_pred             EEEeEEEEEcCC---CEEEEECCCCchHHHHH-HHHHcC----CCCCCC----EEEECCEEC
Confidence            489999999999   99999999999999999 888887    467777    677777653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.74  E-value=3.7e-08  Score=63.74  Aligned_cols=50  Identities=28%  Similarity=0.456  Sum_probs=41.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..
T Consensus        22 ~~l~~isl~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~   71 (207)
T cd03369          22 PVLKNVSFKVKAG---EKIGIVGRTGAGKSTLI-LALFRF----LEAEEG----KIEIDGID   71 (207)
T ss_pred             ccccCceEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----eEEECCEE
Confidence            5789999999999   99999999999999999 778776    456666    56666654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG0074|consensus

Probab=98.74  E-value=5.1e-08  Score=60.53  Aligned_cols=65  Identities=22%  Similarity=0.319  Sum_probs=50.0

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+++++++|-..+||||++.. +.+.-+....||.|...+.+..+| .+.+.+||..||...+..+
T Consensus        15 ~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~g-~f~LnvwDiGGqr~IRpyW   79 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYDG-TFHLNVWDIGGQRGIRPYW   79 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeecC-cEEEEEEecCCccccchhh
Confidence            4569999999999999999955 444444446677664466777775 5899999999998877654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.74  E-value=4.1e-08  Score=63.43  Aligned_cols=48  Identities=25%  Similarity=0.396  Sum_probs=41.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|
T Consensus        19 ~il~~~s~~i~~G---~~~~i~G~nG~GKSTLl-~~i~G~----~~~~~G----~i~~~g   66 (204)
T cd03250          19 FTLKDINLEVPKG---ELVAIVGPVGSGKSSLL-SALLGE----LEKLSG----SVSVPG   66 (204)
T ss_pred             ceeeeeeEEECCC---CEEEEECCCCCCHHHHH-HHHhCc----CCCCCC----eEEEcC
Confidence            5899999999999   99999999999999999 888886    456677    667776

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.74  E-value=4.6e-08  Score=61.61  Aligned_cols=49  Identities=24%  Similarity=0.335  Sum_probs=41.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++
T Consensus        14 ~~~l~~i~l~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~~   62 (166)
T cd03223          14 RVLLKDLSFEIKPG---DRLLITGPSGTGKSSLF-RALAGL----WPWGSG----RIGMPE   62 (166)
T ss_pred             CeeeecCeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECC
Confidence            35789999999999   99999999999999999 888876    356666    556665

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=3.9e-08  Score=66.64  Aligned_cols=51  Identities=22%  Similarity=0.472  Sum_probs=41.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc---ceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG---GRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~---~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.   |    ++.++|..+
T Consensus        21 ~~l~~v~l~i~~G---e~~~I~G~nGaGKSTLl-~~l~G~----~~p~~g~~G----~i~i~g~~~   74 (282)
T PRK13640         21 PALNDISFSIPRG---SWTALIGHNGSGKSTIS-KLINGL----LLPDDNPNS----KITVDGITL   74 (282)
T ss_pred             cceeeEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcc----cCCCCCCCc----EEEECCEEC
Confidence            4799999999999   99999999999999999 778776    34543   5    566666544

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.73  E-value=3.7e-08  Score=66.23  Aligned_cols=56  Identities=14%  Similarity=0.250  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        32 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~I~~~g~~i   88 (267)
T PRK14235         32 KQALFDVDLDIPEK---TVTAFIGPSGCGKSTFL-RCLNRMNDTIDGCRVTG----KITLDGEDI   88 (267)
T ss_pred             EEEEEEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcccccCCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 8888763210 013566    677777654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.73  E-value=5e-08  Score=64.79  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        17 ~~l~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~i   72 (250)
T PRK14247         17 EVLDGVNLEIPDN---TITALMGPSGSGKSTLL-RVFNRLIELYPEARVSG----EVYLDGQDI   72 (250)
T ss_pred             eeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCCCCCCCCce----EEEECCEEC
Confidence            5789999999999   99999999999999999 7888764221 113566    666776543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.73  E-value=4.5e-08  Score=62.86  Aligned_cols=54  Identities=17%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.++   ..++++|++|+|||||+ +.+.+...  ..|+.|    ++.++|+.+
T Consensus        20 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~~~--~~~~~G----~i~~~g~~~   73 (192)
T cd03232          20 RQLLNNISGYVKPG---TLTALMGESGAGKTTLL-DVLAGRKT--AGVITG----EILINGRPL   73 (192)
T ss_pred             eEeEEccEEEEeCC---cEEEEECCCCCCHHHHH-HHHhCCCc--CCCcce----EEEECCEeh
Confidence            45789999999999   99999999999999999 77777521  235566    677777654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.73  E-value=5.5e-09  Score=69.52  Aligned_cols=49  Identities=24%  Similarity=0.491  Sum_probs=43.6

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ++++++++.++   ..++++||+|+||||++ ..+++.    |.|+.|    ++.++|+.+
T Consensus        20 l~~Vsl~v~~G---ei~~LIGPNGAGKTTlf-NlitG~----~~P~~G----~v~~~G~~i   68 (250)
T COG0411          20 VNDVSLEVRPG---EIVGLIGPNGAGKTTLF-NLITGF----YKPSSG----TVIFRGRDI   68 (250)
T ss_pred             EeceeEEEcCC---eEEEEECCCCCCceeee-eeeccc----ccCCCc----eEEECCccc
Confidence            79999999999   99999999999999999 778887    789988    778877744

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.73  E-value=4.6e-08  Score=65.39  Aligned_cols=52  Identities=25%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        34 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~i~g~~i   85 (257)
T cd03288          34 KPVLKHVKAYIKPG---QKVGICGRTGSGKSSLS-LAFFRM----VDIFDG----KIVIDGIDI   85 (257)
T ss_pred             CcceeEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcc----cCCCCC----eEEECCEEh
Confidence            35789999999999   99999999999999999 777776    456667    566766543

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2e-08  Score=73.05  Aligned_cols=54  Identities=28%  Similarity=0.532  Sum_probs=45.8

Q ss_pred             CCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           6 NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+...++++++++.+|   .|++++|.+||||||++ ..+.+.    ++|..|    ++.++|.++
T Consensus       349 ~~~~~L~~~~l~l~~G---EkvAIlG~SGsGKSTll-qLl~~~----~~~~~G----~i~~~g~~~  402 (573)
T COG4987         349 QQTKALKNFNLTLAQG---EKVAILGRSGSGKSTLL-QLLAGA----WDPQQG----SITLNGVEI  402 (573)
T ss_pred             CccchhhccceeecCC---CeEEEECCCCCCHHHHH-HHHHhc----cCCCCC----eeeECCcCh
Confidence            3457899999999999   99999999999999999 777776    677777    777777654

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.73  E-value=4.2e-08  Score=68.83  Aligned_cols=51  Identities=22%  Similarity=0.418  Sum_probs=43.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--ceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG--GRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~--~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.++   ..++++|++|||||||+ +.+.+.    ..|+.  |    ++.++|+.+
T Consensus        19 ~~l~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl----~~p~~~~G----~i~~~g~~~   71 (362)
T TIGR03258        19 TVLDDLSLEIEAG---ELLALIGKSGCGKTTLL-RAIAGF----VKAAGLTG----RIAIADRDL   71 (362)
T ss_pred             EEEeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCCCE----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    45666  7    677777654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.73  E-value=3.3e-08  Score=72.69  Aligned_cols=52  Identities=27%  Similarity=0.460  Sum_probs=44.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    .+.+||.++
T Consensus       348 ~~iL~~inl~i~~G---~~v~IvG~sGsGKSTLl-~lL~gl----~~p~~G----~I~i~g~~i  399 (588)
T PRK13657        348 RQGVEDVSFEAKPG---QTVAIVGPTGAGKSTLI-NLLQRV----FDPQSG----RILIDGTDI  399 (588)
T ss_pred             CceecceeEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCEEh
Confidence            35789999999999   99999999999999999 888887    677777    778888654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.73  E-value=4.5e-08  Score=63.45  Aligned_cols=48  Identities=35%  Similarity=0.596  Sum_probs=39.3

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~gl----~~~~~G----~i~~~g~~~   62 (211)
T cd03298          15 MHFDLTFAQG---EITAIVGPSGSGKSTLL-NLIAGF----ETPQSG----RVLINGVDV   62 (211)
T ss_pred             cceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEc
Confidence            3889999999   99999999999999999 888876    456667    566666543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.72  E-value=4.7e-08  Score=67.83  Aligned_cols=52  Identities=29%  Similarity=0.358  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++|+|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        34 ~~~l~~vsl~i~~G---e~~~lvG~sGsGKSTLl-k~i~Gl----~~p~~G----~I~~~G~~i   85 (331)
T PRK15079         34 LKAVDGVTLRLYEG---ETLGVVGESGCGKSTFA-RAIIGL----VKATDG----EVAWLGKDL   85 (331)
T ss_pred             eEEEeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHCC----CCCCCc----EEEECCEEC
Confidence            35789999999999   99999999999999999 777776    356677    677777643

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.72  E-value=3.9e-08  Score=71.88  Aligned_cols=51  Identities=33%  Similarity=0.508  Sum_probs=44.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   .+++++|++|+|||||+ +.+.+.    ++|..|    ++.+||.++
T Consensus       337 ~~l~~i~~~i~~G---~~~aivG~sGsGKSTL~-~ll~g~----~~~~~G----~i~~~g~~~  387 (547)
T PRK10522        337 FSVGPINLTIKRG---ELLFLIGGNGSGKSTLA-MLLTGL----YQPQSG----EILLDGKPV  387 (547)
T ss_pred             eEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEC
Confidence            4789999999999   99999999999999999 888776    677777    677887654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.72  E-value=5.3e-08  Score=64.43  Aligned_cols=52  Identities=19%  Similarity=0.420  Sum_probs=43.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++.++++.+.+|   ..++++|+||+||||++ +-+.+.    ..+..|    ++.++|+++
T Consensus        16 ~~~L~gvsl~v~~G---eiv~llG~NGaGKTTlL-kti~Gl----~~~~~G----~I~~~G~di   67 (237)
T COG0410          16 IQALRGVSLEVERG---EIVALLGRNGAGKTTLL-KTIMGL----VRPRSG----RIIFDGEDI   67 (237)
T ss_pred             eeEEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----eEEECCeec
Confidence            46789999999999   99999999999999999 767776    345567    788888765

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.72  E-value=4.7e-08  Score=65.28  Aligned_cols=56  Identities=20%  Similarity=0.269  Sum_probs=42.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.... ...|+.|    ++.++|..+
T Consensus        17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~laGl~~~~~~~~~~G----~I~~~g~~~   73 (258)
T PRK14241         17 FHAVEDVNLNIEPR---SVTAFIGPSGCGKSTVL-RTLNRMHEVIPGARVEG----EVLLDGEDL   73 (258)
T ss_pred             EeeeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhccCCcccCCCcce----EEEECCEec
Confidence            35789999999999   99999999999999999 778776321 0113466    677777654

>cd01889 SelB_euk SelB subfamily

Probab=98.72  E-value=2.1e-08  Score=64.16  Aligned_cols=60  Identities=20%  Similarity=0.202  Sum_probs=37.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC----CCCCCCC-----CCcc-ee-EEEEE----------ECCeEEEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG----AFLQEES-----PEGG-RF-KKEVV----------IDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~----~f~~~~~-----~t~~-~~-~~~~~----------~~g~~i~~~i~d~~g~~~   83 (93)
                      ++++++|+.++|||||+.+++..    .+...+.     .|.+ .+ ...+.          .++....+.+|||+|+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999999862    2222111     1211 11 11221          123467889999999865


Q ss_pred             C
Q psy6968          84 L   84 (93)
Q Consensus        84 ~   84 (93)
                      +
T Consensus        81 ~   81 (192)
T cd01889          81 L   81 (192)
T ss_pred             H
Confidence            3

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.72  E-value=3.2e-08  Score=71.74  Aligned_cols=52  Identities=25%  Similarity=0.491  Sum_probs=46.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      +.++++++.+.+|   .-.+++|+||+|||||+ +.+.+.    |.|+.|    ++.++|+.+.
T Consensus        22 ~AL~~v~l~v~~G---EV~aL~GeNGAGKSTLm-KiLsGv----~~p~~G----~I~~~G~~~~   73 (500)
T COG1129          22 KALDGVSLTVRPG---EVHALLGENGAGKSTLM-KILSGV----YPPDSG----EILIDGKPVA   73 (500)
T ss_pred             eeeccceeEEeCc---eEEEEecCCCCCHHHHH-HHHhCc----ccCCCc----eEEECCEEcc
Confidence            4589999999999   99999999999999999 888887    778888    8888988764

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.72  E-value=5.3e-08  Score=65.17  Aligned_cols=55  Identities=18%  Similarity=0.397  Sum_probs=41.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... .++.|    ++.++|..+
T Consensus        17 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~p~-~~~~G----~i~~~g~~~   71 (262)
T PRK09984         17 HQALHAVDLNIHHG---EMVALLGPSGSGKSTLL-RHLSGLITGD-KSAGS----HIELLGRTV   71 (262)
T ss_pred             eEEEecceEEEcCC---cEEEEECCCCCCHHHHH-HHHhccCCCC-CCCce----EEEECCEec
Confidence            45789999999999   99999999999999999 8888763211 11235    666777554

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=4.9e-08  Score=65.98  Aligned_cols=51  Identities=27%  Similarity=0.414  Sum_probs=42.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        21 ~~l~~v~l~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~i   71 (277)
T PRK13642         21 NQLNGVSFSITKG---EWVSIIGQNGSGKSTTA-RLIDGL----FEEFEG----KVKIDGELL   71 (277)
T ss_pred             eeeeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCC----EEEECCEEC
Confidence            3789999999999   99999999999999999 888877    456777    677777543

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=4.8e-08  Score=68.90  Aligned_cols=51  Identities=27%  Similarity=0.546  Sum_probs=43.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|+.+
T Consensus        33 ~~l~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~IaGl----~~p~~G----~I~i~g~~i   83 (377)
T PRK11607         33 HAVDDVSLTIYKG---EIFALLGASGCGKSTLL-RMLAGF----EQPTAG----QIMLDGVDL   83 (377)
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            4578999999999   99999999999999999 888887    467777    677887654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.72  E-value=6.2e-08  Score=64.30  Aligned_cols=54  Identities=17%  Similarity=0.245  Sum_probs=42.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.... +.|+.|    ++.++|+++
T Consensus        16 ~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~-~~~~~G----~i~~~g~~i   69 (246)
T PRK14269         16 QALFDINMQIEQN---KITALIGASGCGKSTFL-RCFNRMNDK-IAKIDG----LVEIEGKDV   69 (246)
T ss_pred             eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccCC-CCCCce----EEEECCEec
Confidence            5789999999999   99999999999999999 777775211 235566    677777654

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.72  E-value=5.3e-08  Score=65.46  Aligned_cols=56  Identities=14%  Similarity=0.219  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        33 ~~il~~vsl~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~~   89 (267)
T PRK14237         33 KEAIKGIDMQFEKN---KITALIGPSGSGKSTYL-RSLNRMNDTIDIARVTG----QILYRGIDI   89 (267)
T ss_pred             eeeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhccCccCCCCcce----EEEECCEEc
Confidence            45789999999999   99999999999999999 7887763211 024566    667777654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.71  E-value=4.7e-08  Score=63.84  Aligned_cols=41  Identities=27%  Similarity=0.639  Sum_probs=35.9

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      +++++++.+.++   ..++++|++|+|||||+ +.+.+.    +.|+.|
T Consensus         2 vl~~vs~~i~~G---e~~~l~G~NGsGKSTLl-k~i~Gl----~~~~sG   42 (213)
T PRK15177          2 VLDKTDFVMGYH---EHIGILAAPGSGKTTLT-RLLCGL----DAPDEG   42 (213)
T ss_pred             eeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----ccCCCC
Confidence            578999999999   99999999999999999 888876    456666

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.71  E-value=4.6e-08  Score=65.08  Aligned_cols=56  Identities=16%  Similarity=0.259  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|+.+
T Consensus        19 ~~il~~is~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i   75 (253)
T PRK14242         19 FQALHDISLEFEQN---QVTALIGPSGCGKSTFL-RCLNRMNDLIPGARVEG----EILLDGENI   75 (253)
T ss_pred             eeeecceeEEEeCC---CEEEEECCCCCCHHHHH-HHHHhhcccCCCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 7777753110 113566    667777654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.71  E-value=5.6e-08  Score=62.68  Aligned_cols=60  Identities=15%  Similarity=0.137  Sum_probs=36.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccee--E-EEEEEC-CeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF--K-KEVVID-GHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~--~-~~~~~~-g~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|++|+|||||++.+++..+..+..+..+..  . ....+. +....+.+||+.|....
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~   65 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST   65 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence            689999999999999997777655443322221211  0 000111 11236889999997643

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.71  E-value=4.5e-08  Score=63.47  Aligned_cols=50  Identities=26%  Similarity=0.512  Sum_probs=40.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.++    .++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        14 ~~l~~vs~~i~~g----~~~i~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~~   63 (211)
T cd03264          14 RALDGVSLTLGPG----MYGLLGPNGAGKTTLM-RILATL----TPPSSG----TIRIDGQDV   63 (211)
T ss_pred             EEEcceeEEEcCC----cEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCCcc
Confidence            5789999999875    7899999999999999 888876    456677    677777543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.70  E-value=6e-08  Score=65.39  Aligned_cols=56  Identities=13%  Similarity=0.236  Sum_probs=43.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.... ...|+.|    ++.++|..+
T Consensus        37 ~~il~~vsl~i~~G---e~~~I~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G----~i~~~g~~~   93 (271)
T PRK14238         37 DHALKNINLDIHEN---EVTAIIGPSGCGKSTYI-KTLNRMVELVPSVKTTG----KILYRDQNI   93 (271)
T ss_pred             cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCce----eEEECCEEc
Confidence            35789999999999   99999999999999999 888776321 1114566    677777644

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.70  E-value=6.5e-08  Score=64.25  Aligned_cols=53  Identities=21%  Similarity=0.369  Sum_probs=41.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..  .+.|+.|    ++.++|..
T Consensus        20 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~--~~~~~~G----~i~~~g~~   72 (252)
T CHL00131         20 NEILKGLNLSINKG---EIHAIMGPNGSGKSTLS-KVIAGHP--AYKILEG----DILFKGES   72 (252)
T ss_pred             EEeeecceeEEcCC---cEEEEECCCCCCHHHHH-HHHcCCC--cCcCCCc----eEEECCEE
Confidence            35789999999999   99999999999999999 7888752  1345666    45555543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.70  E-value=4.8e-08  Score=70.74  Aligned_cols=50  Identities=18%  Similarity=0.395  Sum_probs=41.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        18 ~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~l~G~----~~p~~G----~i~~~g~~   67 (501)
T PRK10762         18 KALSGAALNVYPG---RVMALVGENGAGKSTMM-KVLTGI----YTRDAG----SILYLGKE   67 (501)
T ss_pred             EEeeeeeEEEcCC---eEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEE
Confidence            5789999999999   99999999999999999 888887    356666    56666644

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=6.4e-08  Score=65.77  Aligned_cols=56  Identities=14%  Similarity=0.264  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+...... .|+.|    .+.++|..+
T Consensus        52 ~~il~~is~~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G----~I~i~G~~i  108 (285)
T PRK14254         52 EQALDDVSMDIPEN---QVTAMIGPSGCGKSTFL-RCINRMNDLIDAARVEG----ELTFRGKNV  108 (285)
T ss_pred             EeeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCcccCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 88887642111 14566    667777654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.70  E-value=6.9e-08  Score=65.07  Aligned_cols=50  Identities=28%  Similarity=0.330  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|.
T Consensus        37 ~~il~~is~~i~~G---e~~~liG~NGsGKSTLl-k~L~Gl----~~p~~G----~I~~~g~   86 (264)
T PRK13546         37 FFALDDISLKAYEG---DVIGLVGINGSGKSTLS-NIIGGS----LSPTVG----KVDRNGE   86 (264)
T ss_pred             eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----cCCCce----EEEECCE
Confidence            45789999999999   99999999999999999 888776    456667    6677774

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.70  E-value=5.8e-08  Score=64.98  Aligned_cols=55  Identities=22%  Similarity=0.401  Sum_probs=42.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        27 ~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~p~~G----~i~~~g~~~   82 (260)
T PRK10744         27 HALKNINLDIAKN---QVTAFIGPSGCGKSTLL-RTFNRMYELYPEQRAEG----EILLDGENI   82 (260)
T ss_pred             EEeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccccCCCCCcce----EEEECCEEc
Confidence            5789999999999   99999999999999999 8888764210 124566    667777544

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.70  E-value=5.6e-08  Score=63.54  Aligned_cols=47  Identities=17%  Similarity=0.372  Sum_probs=39.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID   67 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~   67 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++
T Consensus        22 ~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~i~G~----~~~~~G----~i~~~   68 (224)
T TIGR02324        22 PVLKNVSLTVNAG---ECVALSGPSGAGKSTLL-KSLYAN----YLPDSG----RILVR   68 (224)
T ss_pred             EEEecceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEEe
Confidence            5789999999999   99999999999999999 788876    456666    45554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=5.9e-08  Score=64.64  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=41.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...... .|+.|    ++.++|..+
T Consensus        20 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i   76 (254)
T PRK14273         20 FKALNNINIKILKN---SITALIGPSGCGKSTFL-RTLNRMNDLVEGIKIEG----NVIYEGKNI   76 (254)
T ss_pred             ceeecceeeEEcCC---CEEEEECCCCCCHHHHH-HHHhccccCCcCCCCce----EEEECCEec
Confidence            35789999999999   99999999999999999 77777632210 12355    666766543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.69  E-value=5.7e-08  Score=71.89  Aligned_cols=64  Identities=14%  Similarity=0.133  Sum_probs=45.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      -+++++|..++|||||+.++....+...+.+.. -.. ...+.+++.. .+.+|||+|+++|..++.
T Consensus        88 p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~  153 (587)
T TIGR00487        88 PVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRA  153 (587)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHH
Confidence            689999999999999999988877765543321 111 2244554321 678999999999987654

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.69  E-value=5.7e-08  Score=64.32  Aligned_cols=52  Identities=23%  Similarity=0.288  Sum_probs=40.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+...  +.|+.|    ++.++|.
T Consensus        14 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~--~~~~~G----~i~~~g~   65 (248)
T PRK09580         14 KAILRGLNLEVRPG---EVHAIMGPNGSGKSTLS-ATLAGRED--YEVTGG----TVEFKGK   65 (248)
T ss_pred             eeeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHcCCcc--CCCCce----EEEECCC
Confidence            35789999999999   99999999999999999 88887621  235566    5556654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.69  E-value=6.5e-08  Score=62.50  Aligned_cols=54  Identities=20%  Similarity=0.328  Sum_probs=42.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+...  +.|+.|    ++.++|.++
T Consensus        13 ~~~l~~is~~i~~G---e~~~i~G~nGsGKStLl-~~l~G~~~--~~p~~G----~i~~~g~~~   66 (200)
T cd03217          13 KEILKGVNLTIKKG---EVHALMGPNGSGKSTLA-KTIMGHPK--YEVTEG----EILFKGEDI   66 (200)
T ss_pred             EEeeeccceEECCC---cEEEEECCCCCCHHHHH-HHHhCCCc--CCCCcc----EEEECCEEC
Confidence            35789999999999   99999999999999999 77777521  246667    677777543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.69  E-value=5.2e-08  Score=70.68  Aligned_cols=51  Identities=22%  Similarity=0.375  Sum_probs=41.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        18 ~~il~~vs~~i~~G---e~~~liG~nGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~   68 (510)
T PRK09700         18 VHALKSVNLTVYPG---EIHALLGENGAGKSTLM-KVLSGI----HEPTKG----TITINNIN   68 (510)
T ss_pred             eEEeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----cCCCcc----EEEECCEE
Confidence            35789999999999   99999999999999999 888887    346666    55666543

>KOG0057|consensus

Probab=98.69  E-value=2.3e-08  Score=72.81  Aligned_cols=51  Identities=31%  Similarity=0.544  Sum_probs=42.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++++|   .|++++|++||||||++ |.+-+.|.     ..|    ++.+||.++
T Consensus       365 ~~iL~gvsf~I~kG---ekVaIvG~nGsGKSTil-r~LlrF~d-----~sG----~I~IdG~di  415 (591)
T KOG0057|consen  365 RKVLKGVSFTIPKG---EKVAIVGSNGSGKSTIL-RLLLRFFD-----YSG----SILIDGQDI  415 (591)
T ss_pred             CceecceeEEecCC---CEEEEECCCCCCHHHHH-HHHHHHhc-----cCC----cEEECCeeH
Confidence            45899999999999   99999999999999999 88877753     234    678888654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=6.1e-08  Score=63.77  Aligned_cols=47  Identities=28%  Similarity=0.611  Sum_probs=38.7

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|..
T Consensus        16 ~~is~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~~~~G----~i~~~g~~   62 (232)
T PRK10771         16 MRFDLTVERG---ERVAILGPSGAGKSTLL-NLIAGF----LTPASG----SLTLNGQD   62 (232)
T ss_pred             ceeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCee
Confidence            3789999999   99999999999999999 888886    456666    56666654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.69  E-value=6.9e-08  Score=64.16  Aligned_cols=56  Identities=16%  Similarity=0.246  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...+ ...|+.|    ++.++|..+
T Consensus        17 ~~~l~~~sl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G----~v~i~g~~~   73 (251)
T PRK14251         17 YEALHGISLDFEEK---ELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITG----EIKFEGQNI   73 (251)
T ss_pred             eeeeeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhhccccccCCCcce----EEEECCEEc
Confidence            45789999999999   99999999999999999 888876321 0013456    666777543

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.69  E-value=4.9e-08  Score=71.27  Aligned_cols=52  Identities=33%  Similarity=0.514  Sum_probs=44.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +..++++++++.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus       331 ~~~l~~~~~~i~~G---~~~~ivG~sGsGKSTL~-~ll~g~----~~~~~G----~i~~~g~~i  382 (544)
T TIGR01842       331 KPTLRGISFRLQAG---EALAIIGPSGSGKSTLA-RLIVGI----WPPTSG----SVRLDGADL  382 (544)
T ss_pred             ccccccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEeh
Confidence            35789999999999   99999999999999999 778776    577777    677777654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.69  E-value=8e-08  Score=64.24  Aligned_cols=56  Identities=16%  Similarity=0.275  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        25 ~~il~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G----~i~~~g~~i   81 (258)
T PRK14268         25 KQALKNVSMQIPKN---SVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEG----KVSIEGEDI   81 (258)
T ss_pred             eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcCCCcccCCCcce----EEEECCEEc
Confidence            35789999999999   99999999999999999 8887763221 113566    677777654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.69  E-value=7.5e-08  Score=63.95  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...+.. .|+.|    ++.++|..+
T Consensus        16 ~~~l~~i~~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G----~i~i~g~~~   72 (250)
T PRK14262         16 KKAVKNVTMKIFKN---QITAIIGPSGCGKTTLL-RSINRMNDHIPGFRVEG----KIYFKGQDI   72 (250)
T ss_pred             ceeEeeeeEeecCC---CEEEEECCCCCCHHHHH-HHHhccccCCCCCCcce----EEEECCEEc
Confidence            35789999999999   99999999999999999 88887632110 13456    666776544

>PRK03003 GTP-binding protein Der; Reviewed

Probab=98.68  E-value=1.1e-07  Score=68.59  Aligned_cols=57  Identities=25%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCC--cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      .+|++||.++||||||+++++.+.+.. ...|.  .+.....+.+++.  .+.+|||+|++.
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~   98 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEP   98 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCC
Confidence            689999999999999999999876422 12222  2223445566665  467899999874

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.68  E-value=8.3e-08  Score=58.75  Aligned_cols=54  Identities=17%  Similarity=0.141  Sum_probs=36.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      .++++|++|+|||||++.++.+.+.....++.+ .. ......++   .+.+||+.|..
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~   56 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYG   56 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCcc
Confidence            478999999999999988886665554444422 11 12223333   78899998843

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.68  E-value=6.5e-08  Score=70.28  Aligned_cols=51  Identities=25%  Similarity=0.490  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        24 ~~il~~vsl~i~~G---e~~~liG~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~   74 (510)
T PRK15439         24 VEVLKGIDFTLHAG---EVHALLGGNGAGKSTLM-KIIAGI----VPPDSG----TLEIGGNP   74 (510)
T ss_pred             ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEE
Confidence            35789999999999   99999999999999999 888886    456667    56666654

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.68  E-value=7.9e-08  Score=64.25  Aligned_cols=49  Identities=27%  Similarity=0.454  Sum_probs=40.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++
T Consensus        17 ~~vl~~vs~~i~~G---e~~~I~G~NGsGKSTLl-~~i~Gl----~~p~~G----~i~~~~   65 (251)
T PRK09544         17 RRVLSDVSLELKPG---KILTLLGPNGAGKSTLV-RVVLGL----VAPDEG----VIKRNG   65 (251)
T ss_pred             ceEEEeEEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECC
Confidence            35789999999999   99999999999999999 788876    356666    555655

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.68  E-value=5e-08  Score=71.64  Aligned_cols=52  Identities=25%  Similarity=0.354  Sum_probs=44.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus       328 ~~~l~~i~~~i~~G---~~~~ivG~sGsGKSTLl-~ll~g~----~~p~~G----~i~~~g~~~  379 (569)
T PRK10789        328 HPALENVNFTLKPG---QMLGICGPTGSGKSTLL-SLIQRH----FDVSEG----DIRFHDIPL  379 (569)
T ss_pred             CccccCeeEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCCC----EEEECCEEH
Confidence            35789999999999   99999999999999999 878776    678877    677777654

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.68  E-value=4.9e-08  Score=71.46  Aligned_cols=51  Identities=22%  Similarity=0.422  Sum_probs=43.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++.++++.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.+||.++
T Consensus       354 ~iL~~inl~i~~G---e~i~IvG~sGsGKSTLl-klL~gl----~~p~~G----~I~i~g~~i  404 (576)
T TIGR02204       354 PALDGLNLTVRPG---ETVALVGPSGAGKSTLF-QLLLRF----YDPQSG----RILLDGVDL  404 (576)
T ss_pred             ccccceeEEecCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----EEEECCEEH
Confidence            4789999999999   99999999999999999 777776    677777    677887654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.68  E-value=1.8e-07  Score=61.98  Aligned_cols=57  Identities=18%  Similarity=0.081  Sum_probs=37.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAF-LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      +++++|++|||||||++++.+... ...++.+ .......+.+++  ..+++||++|+.+.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~   60 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEG   60 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccc
Confidence            789999999999999977776432 1122222 222233555665  56789999998654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.68  E-value=5.3e-08  Score=72.91  Aligned_cols=52  Identities=27%  Similarity=0.498  Sum_probs=45.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.+||.++
T Consensus       470 ~~il~~i~l~i~~G---~~vaivG~sGsGKSTL~-~ll~g~----~~p~~G----~I~idg~~i  521 (694)
T TIGR01846       470 PEVLSNLNLDIKPG---EFIGIVGPSGSGKSTLT-KLLQRL----YTPQHG----QVLVDGVDL  521 (694)
T ss_pred             ccccccceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCEeh
Confidence            34789999999999   99999999999999999 888887    678888    788888765

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.68  E-value=4.7e-08  Score=71.44  Aligned_cols=52  Identities=27%  Similarity=0.499  Sum_probs=44.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   .+++++|++|+|||||+ +.+.+.    +.|..|    .+.+||.++
T Consensus       345 ~~il~~inl~i~~G---~~v~IvG~sGsGKSTLl-~lL~gl----~~~~~G----~I~i~g~~i  396 (571)
T TIGR02203       345 RPALDSISLVIEPG---ETVALVGRSGSGKSTLV-NLIPRF----YEPDSG----QILLDGHDL  396 (571)
T ss_pred             CccccCeeEEecCC---CEEEEECCCCCCHHHHH-HHHHhc----cCCCCC----eEEECCEeH
Confidence            34789999999999   99999999999999999 878777    677777    778888654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.67  E-value=1.2e-07  Score=67.17  Aligned_cols=55  Identities=22%  Similarity=0.242  Sum_probs=38.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      +++++|.++||||||+++++....  ...+..+ .+.....+.+++.  .+.+|||+|.+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~   58 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIE   58 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCC
Confidence            589999999999999999988653  2222222 2323445667765  57899999964

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04167 Snu114p Snu114p subfamily

Probab=98.67  E-value=4e-08  Score=63.97  Aligned_cols=60  Identities=22%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCC-----------CCCC------cc-ee-EE--EEEE---CCeEEEEEEEecCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQE-----------ESPE------GG-RF-KK--EVVI---DGHSHLLLIRDEGVP   81 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~-----------~~~t------~~-~~-~~--~~~~---~g~~i~~~i~d~~g~   81 (93)
                      +++++|..|+|||||+.+++...+...           +..+      .+ .+ ..  .+.+   ++..+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999987554321           0011      00 01 11  1112   356789999999999


Q ss_pred             CCCC
Q psy6968          82 PELQ   85 (93)
Q Consensus        82 ~~~~   85 (93)
                      ++|.
T Consensus        82 ~~f~   85 (213)
T cd04167          82 VNFM   85 (213)
T ss_pred             cchH
Confidence            9884

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=8.8e-08  Score=64.02  Aligned_cols=56  Identities=14%  Similarity=0.248  Sum_probs=42.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.... ...++.|    ++.++|..+
T Consensus        25 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~~~~~p~~~~~G----~i~~~g~~~   81 (259)
T PRK14274         25 HHALKNINLSIPEN---EVTAIIGPSGCGKSTFI-KTLNLMIQMVPNVKLTG----EMNYNGSNI   81 (259)
T ss_pred             eeeEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 777775321 0012355    677777654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.67  E-value=8.3e-08  Score=63.74  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=42.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..++.|    ++.++|..+
T Consensus        16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~~   72 (250)
T PRK14240         16 FQALKKINLDIEEN---QVTALIGPSGCGKSTFL-RTLNRMNDLIPSVKIEG----EVLLDGQDI   72 (250)
T ss_pred             ceeeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 7787753210 012456    677777654

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.67  E-value=6.3e-08  Score=69.95  Aligned_cols=51  Identities=16%  Similarity=0.334  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..
T Consensus        11 ~~il~~vs~~i~~G---e~~~liG~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~   61 (491)
T PRK10982         11 VKALDNVNLKVRPH---SIHALMGENGAGKSTLL-KCLFGI----YQKDSG----SILFQGKE   61 (491)
T ss_pred             EEeeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCce----EEEECCEE
Confidence            35789999999999   99999999999999999 888886    356666    56666654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.67  E-value=6.5e-08  Score=70.90  Aligned_cols=51  Identities=27%  Similarity=0.440  Sum_probs=44.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.+||.++
T Consensus       356 ~~l~~vs~~i~~G---~~~aivG~sGsGKSTl~-~ll~g~----~~p~~G----~i~~~g~~i  406 (555)
T TIGR01194       356 FALGPIDLRIAQG---DIVFIVGENGCGKSTLA-KLFCGL----YIPQEG----EILLDGAAV  406 (555)
T ss_pred             ceeccceEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            4789999999999   99999999999999999 777776    678878    777887654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.67  E-value=7.4e-08  Score=66.81  Aligned_cols=54  Identities=31%  Similarity=0.428  Sum_probs=42.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+...... .+.|    ++.++|..+
T Consensus        30 ~~l~~vsl~i~~G---e~~~ivG~sGsGKSTL~-~~l~Gl~~p~~-~~sG----~I~~~G~~i   83 (330)
T PRK09473         30 TAVNDLNFSLRAG---ETLGIVGESGSGKSQTA-FALMGLLAANG-RIGG----SATFNGREI   83 (330)
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCchHHHHH-HHHHcCCCCCC-CCCe----EEEECCEEC
Confidence            4789999999999   99999999999999999 77877742210 1256    677777654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.67  E-value=1.6e-07  Score=66.57  Aligned_cols=62  Identities=16%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..+++++|.+++|||||+++++....  ..++..+ .+.+...+..++.  .+.+|||+|+.++..+
T Consensus       172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~  236 (429)
T TIGR03594       172 PIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKV  236 (429)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccc
Confidence            47999999999999999999887542  2223333 2323344556665  6789999998776543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=8.5e-08  Score=64.41  Aligned_cols=56  Identities=16%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCC-CCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFL-QEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+... ..+.|..|    ++.++|..+
T Consensus        34 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i   90 (268)
T PRK14248         34 KRAVNDISMDIEKH---AVTALIGPSGCGKSTFL-RSINRMNDLIPSARSEG----EILYEGLNI   90 (268)
T ss_pred             ceeeeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhcccccCCCCCce----EEEECCEEc
Confidence            45789999999999   99999999999999999 77777531 11124566    566676544

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.66  E-value=9.1e-08  Score=62.22  Aligned_cols=50  Identities=24%  Similarity=0.499  Sum_probs=40.7

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+.++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    ++.++|..+
T Consensus        13 ~~~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~~   62 (213)
T TIGR01277        13 LPMEFDLNVADG---EIVAIMGPSGAGKSTLL-NLIAGF----IEPASG----SIKVNDQSH   62 (213)
T ss_pred             cceeeEEEEeCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEc
Confidence            356899999999   99999999999999999 777776    456667    666776543

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.66  E-value=5.5e-08  Score=70.46  Aligned_cols=52  Identities=31%  Similarity=0.523  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus       265 ~~~l~~vsl~i~~G---e~~~liG~NGsGKSTLl-~~l~G~----~~p~~G----~I~~~g~~i  316 (501)
T PRK10762        265 GPGVNDVSFTLRKG---EILGVSGLMGAGRTELM-KVLYGA----LPRTSG----YVTLDGHEV  316 (501)
T ss_pred             cCCcccceEEEcCC---cEEEEecCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            34589999999999   99999999999999999 877776    356667    667776543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=1.1e-07  Score=63.17  Aligned_cols=56  Identities=16%  Similarity=0.269  Sum_probs=42.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.... ...|+.|    ++.++|..+
T Consensus        17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~i   73 (252)
T PRK14256         17 NHAVKDVSMDFPEN---SVTAIIGPSGCGKSTVL-RSINRMHDLVPSARVTG----KILLDDTDI   73 (252)
T ss_pred             eeEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHHhcccCCCCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 778776321 0012456    566777544

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=1e-07  Score=63.42  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=42.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...... .++.|    ++.++|..+
T Consensus        17 ~~il~~~s~~i~~G---~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~~   73 (251)
T PRK14249         17 HQVLKNINMDFPER---QITAIIGPSGCGKSTLL-RALNRMNDIVSGARLEG----AVLLDNENI   73 (251)
T ss_pred             eeEecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccCccccCCccc----EEEECCEEc
Confidence            35789999999999   99999999999999999 77877643221 12245    566666543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.66  E-value=9.2e-08  Score=65.10  Aligned_cols=49  Identities=24%  Similarity=0.464  Sum_probs=41.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      +.+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|
T Consensus        50 ~~vL~~vs~~i~~G---e~~~liG~NGsGKSTLl-~~I~Gl----~~p~~G----~I~i~g   98 (282)
T cd03291          50 APVLKNINLKIEKG---EMLAITGSTGSGKTSLL-MLILGE----LEPSEG----KIKHSG   98 (282)
T ss_pred             ccceeeeeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECC
Confidence            45789999999999   99999999999999999 777776    456667    566666

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>KOG0055|consensus

Probab=98.66  E-value=4.3e-08  Score=76.66  Aligned_cols=52  Identities=27%  Similarity=0.491  Sum_probs=47.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+++|   ..+++||++||||||++ +++.+.    |+|+.|    ++.+||.++
T Consensus       366 v~Il~g~sl~i~~G---~~valVG~SGsGKST~i-~LL~Rf----ydP~~G----~V~idG~di  417 (1228)
T KOG0055|consen  366 VKILKGVSLKIPSG---QTVALVGPSGSGKSTLI-QLLARF----YDPTSG----EVLIDGEDI  417 (1228)
T ss_pred             chhhCCeEEEeCCC---CEEEEECCCCCCHHHHH-HHHHHh----cCCCCc----eEEEcCccc
Confidence            46789999999999   99999999999999999 888887    899988    889998766

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=9.1e-08  Score=63.55  Aligned_cols=56  Identities=16%  Similarity=0.303  Sum_probs=41.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEES-PEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~-~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+...+... ...|    ++.++|..+
T Consensus        17 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~~   73 (252)
T PRK14272         17 KQAVKNVNLDVQRG---TVNALIGPSGCGKTTFL-RAINRMHDLTPGARVTG----RILLDGQDI   73 (252)
T ss_pred             EEeeccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCce----eEEECCEEc
Confidence            35789999999999   99999999999999999 888876321100 0245    666776543

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=5.3e-08  Score=64.58  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=45.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++.+++++..|   ..-+++||+|+|||||. ..+.+.  +.|.+|.|    ++.++|+.+
T Consensus        17 keILkgvnL~v~~G---EvhaiMGPNGsGKSTLa-~~i~G~--p~Y~Vt~G----~I~~~GedI   70 (251)
T COG0396          17 KEILKGVNLTVKEG---EVHAIMGPNGSGKSTLA-YTIMGH--PKYEVTEG----EILFDGEDI   70 (251)
T ss_pred             hhhhcCcceeEcCC---cEEEEECCCCCCHHHHH-HHHhCC--CCceEecc----eEEECCccc
Confidence            47899999999999   99999999999999999 445554  34788888    788998865

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=9.8e-08  Score=64.07  Aligned_cols=56  Identities=18%  Similarity=0.151  Sum_probs=42.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+...+. ..|..|    ++.++|..+
T Consensus        21 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G----~i~~~g~~i   77 (261)
T PRK14263         21 FMAVRDSHVPIRKN---EITGFIGPSGCGKSTVL-RSLNRMNDLVKGFRFEG----HVHFLGQDV   77 (261)
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcccccccCCCCce----EEEECCEec
Confidence            35789999999999   99999999999999999 7787763210 012345    677777654

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=1.3e-07  Score=62.92  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=41.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...... .++.|    ++.++|.++
T Consensus        19 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~~   75 (253)
T PRK14261         19 KHALYDITISIPKN---RVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITG----DILYNGENI   75 (253)
T ss_pred             eeeeeeeEEEECCC---cEEEEECCCCCCHHHHH-HHHhccccCCCCCCcce----EEEECCEEc
Confidence            35789999999999   99999999999999999 88877532110 01345    566776544

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.65  E-value=7.9e-08  Score=64.57  Aligned_cols=49  Identities=22%  Similarity=0.431  Sum_probs=39.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      .+++++++.+.+|   ..+.++||||+|||||+ +.+-+.    ..|..|    ++.+.|+
T Consensus        18 ~vl~~i~l~v~~G---~~~~iiGPNGaGKSTLl-K~iLGl----l~p~~G----~i~~~g~   66 (254)
T COG1121          18 PVLEDISLSVEKG---EITALIGPNGAGKSTLL-KAILGL----LKPSSG----EIKIFGK   66 (254)
T ss_pred             eeeeccEEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CcCCcc----eEEEccc
Confidence            5899999999999   99999999999999999 666665    356655    4444443

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.65  E-value=1.5e-07  Score=58.52  Aligned_cols=51  Identities=35%  Similarity=0.540  Sum_probs=41.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++.++.+.++   ..++++|++|+|||||+ +.+.+.    +.|..+    ++.+++..+
T Consensus        13 ~~l~~~~~~i~~g---~~~~i~G~nGsGKStll-~~l~g~----~~~~~G----~i~~~~~~~   63 (157)
T cd00267          13 TALDNVSLTLKAG---EIVALVGPNGSGKSTLL-RAIAGL----LKPTSG----EILIDGKDI   63 (157)
T ss_pred             eeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCcc----EEEECCEEc
Confidence            5789999999999   99999999999999999 777776    345566    667777543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=7.2e-08  Score=71.84  Aligned_cols=50  Identities=24%  Similarity=0.477  Sum_probs=42.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      +.+++++++.+.+|   .+++++|++|+|||||+ +.+.+.    ..|+.|    .+.+++.
T Consensus        14 ~~~l~~vs~~i~~G---e~v~LvG~NGsGKSTLL-kiL~G~----~~pd~G----~I~~~~~   63 (638)
T PRK10636         14 RVLLDNATATINPG---QKVGLVGKNGCGKSTLL-ALLKNE----ISADGG----SYTFPGN   63 (638)
T ss_pred             ceeecCcEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEecCC
Confidence            45789999999999   99999999999999999 888886    456677    5666653

>TIGR00436 era GTP-binding protein Era

Probab=98.65  E-value=1.5e-07  Score=63.40  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCC--CCCCCcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQ--EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      +++++|.++||||||++++++..+..  ..+.|.......+..++ ..++.+|||+|....
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~   61 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEK   61 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCC
Confidence            68999999999999998888765431  12223222222233222 246789999997643

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=98.65  E-value=1.3e-07  Score=66.21  Aligned_cols=56  Identities=14%  Similarity=0.143  Sum_probs=39.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EE-SPEGGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~-~~t~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      .+++++|.++||||||++++++..+.. .+ .+|.+.....+.+.+. ..+.+|||+|+
T Consensus       190 ~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~  247 (351)
T TIGR03156       190 PTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGF  247 (351)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcc
Confidence            799999999999999999988765432 22 2333333445666322 36789999997

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.65  E-value=1e-07  Score=67.34  Aligned_cols=50  Identities=22%  Similarity=0.287  Sum_probs=42.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|+
T Consensus        37 ~~~l~~vsf~i~~G---ei~~I~G~nGsGKSTLl-r~L~Gl----~~p~~G----~I~idG~   86 (382)
T TIGR03415        37 VVGVANASLDIEEG---EICVLMGLSGSGKSSLL-RAVNGL----NPVSRG----SVLVKDG   86 (382)
T ss_pred             EEEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc----EEEECCE
Confidence            34589999999999   99999999999999999 888887    567777    6777774

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.65  E-value=6.7e-08  Score=62.71  Aligned_cols=52  Identities=23%  Similarity=0.510  Sum_probs=42.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.++   ..+.++|++|+|||||+ +++.+.    ..||.|    .+.++|.++
T Consensus        15 ~~aL~~vs~~i~~G---ef~fl~GpSGAGKSTll-kLi~~~----e~pt~G----~i~~~~~dl   66 (223)
T COG2884          15 REALRDVSFHIPKG---EFVFLTGPSGAGKSTLL-KLIYGE----ERPTRG----KILVNGHDL   66 (223)
T ss_pred             chhhhCceEeecCc---eEEEEECCCCCCHHHHH-HHHHhh----hcCCCc----eEEECCeec
Confidence            44688999999999   99999999999999999 777665    578877    566665543

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.65  E-value=9e-08  Score=69.34  Aligned_cols=50  Identities=24%  Similarity=0.512  Sum_probs=41.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..
T Consensus        18 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~   67 (501)
T PRK11288         18 KALDDISFDCRAG---QVHALMGENGAGKSTLL-KILSGN----YQPDAG----SILIDGQE   67 (501)
T ss_pred             EEEeeeeEEEeCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----EEEECCEE
Confidence            4789999999999   99999999999999999 888886    456666    55666543

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=9.4e-08  Score=63.56  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=42.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.... ...|..|    ++.++|..+
T Consensus        18 ~~~l~~is~~i~~G---e~~~I~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~i   74 (251)
T PRK14244         18 KQILFDINLDIYKR---EVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKG----ELDIDGIDV   74 (251)
T ss_pred             eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcccCCCCCcce----EEEECCEeh
Confidence            35789999999999   99999999999999999 778776321 0113456    566766543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.64  E-value=1.5e-07  Score=60.20  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=39.6

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      ++.+ .+.+.++   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+.
T Consensus        15 ~l~~-~~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i~   64 (177)
T cd03222          15 LLVE-LGVVKEG---EVIGIVGPNGTGKTTAV-KILAGQ----LIPNGD----NDEWDGITPV   64 (177)
T ss_pred             EEcc-CcEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCCc----EEEECCEEEE
Confidence            3444 3678888   99999999999999999 888887    467777    6778876543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.64  E-value=4.7e-08  Score=62.44  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             CcCCCCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           2 KMSSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ++.......++++++++.++   ..++++|++|||||||+ +.+
T Consensus         2 ~~~~~~~~~l~~isl~i~~G---~~~~l~G~nG~GKSTLl-~~i   41 (176)
T cd03238           2 TVSGANVHNLQNLDVSIPLN---VLVVVTGVSGSGKSTLV-NEG   41 (176)
T ss_pred             eecceeeeeecceEEEEcCC---CEEEEECCCCCCHHHHH-HHH
Confidence            34556678899999999999   99999999999999999 555

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=9.4e-08  Score=65.76  Aligned_cols=51  Identities=29%  Similarity=0.533  Sum_probs=45.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   ..++++|.+|+|||||+ |+++..    ..|+.|    .+.++|.++
T Consensus        20 ~al~~vsL~I~~G---eI~GIIG~SGAGKSTLi-R~iN~L----e~PtsG----~v~v~G~di   70 (339)
T COG1135          20 TALDDVSLEIPKG---EIFGIIGYSGAGKSTLL-RLINLL----ERPTSG----SVFVDGQDL   70 (339)
T ss_pred             eeeccceEEEcCC---cEEEEEcCCCCcHHHHH-HHHhcc----CCCCCc----eEEEcCEec
Confidence            4578999999999   99999999999999999 999987    578888    788888654

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.64  E-value=1.6e-07  Score=57.59  Aligned_cols=54  Identities=17%  Similarity=0.252  Sum_probs=36.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      .+++++|.+|+||||++++++......-- .+....+...+.+++   .+.+|||+|-
T Consensus        84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            38999999999999999888876643211 111222334555655   5789999984

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=7.1e-08  Score=63.62  Aligned_cols=57  Identities=23%  Similarity=0.409  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+.++++++.+.++   .-.+++||+|||||||+ |.+++-... + | ......++.++|+++
T Consensus        20 ~~aL~~i~l~i~~~---~VTAlIGPSGcGKST~L-R~lNRmndl-~-~-~~r~~G~v~~~g~ni   76 (253)
T COG1117          20 KHALKDINLDIPKN---KVTALIGPSGCGKSTLL-RCLNRMNDL-I-P-GARVEGEVLLDGKNI   76 (253)
T ss_pred             hhhhccCceeccCC---ceEEEECCCCcCHHHHH-HHHHhhccc-C-c-CceEEEEEEECCeec
Confidence            56689999999888   78899999999999999 877754221 1 1 112344788888766

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.64  E-value=1.5e-07  Score=62.54  Aligned_cols=54  Identities=24%  Similarity=0.335  Sum_probs=41.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC---CcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~---t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+...  ..|   +.|    ++.++|..+
T Consensus        18 ~~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~--~~p~~~~~G----~i~~~g~~~   74 (252)
T PRK14239         18 KKALNSVSLDFYPN---EITALIGPSGSGKSTLL-RSINRMND--LNPEVTITG----SIVYNGHNI   74 (252)
T ss_pred             eeeeeeeeEEEcCC---cEEEEECCCCCCHHHHH-HHHhcccc--cCCCCCccc----eEEECCEEC
Confidence            35789999999999   99999999999999999 77776521  113   356    566666544

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=1.2e-07  Score=63.07  Aligned_cols=56  Identities=18%  Similarity=0.277  Sum_probs=42.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        17 ~~~l~~isl~i~~G---e~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G----~i~~~g~~i   73 (251)
T PRK14270         17 KQALNDINLPIYEN---KITALIGPSGCGKSTFL-RCLNRMNDLISNVKIEG----EVLLDGKNI   73 (251)
T ss_pred             eeeeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHHhccCcccCCCCcc----EEEECCEec
Confidence            35789999999999   99999999999999999 7777763210 012456    667777654

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.63  E-value=8.5e-08  Score=69.57  Aligned_cols=50  Identities=28%  Similarity=0.569  Sum_probs=41.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.
T Consensus       277 ~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl-k~i~Gl----~~p~~G----~I~~~g~~  326 (510)
T PRK09700        277 KKVRDISFSVCRG---EILGFAGLVGSGRTELM-NCLFGV----DKRAGG----EIRLNGKD  326 (510)
T ss_pred             CcccceeEEEcCC---cEEEEECCCCCCHHHHH-HHHhCC----CcCCCC----eEEECCEE
Confidence            4689999999999   99999999999999999 888776    356666    56666654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.63  E-value=9.5e-08  Score=71.11  Aligned_cols=49  Identities=20%  Similarity=0.471  Sum_probs=41.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      ..+++++++.+.+|   .+++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++
T Consensus        16 ~~il~~is~~i~~G---e~v~LvG~NGsGKSTLL-riiaG~----~~p~~G----~I~~~~   64 (635)
T PRK11147         16 APLLDNAELHIEDN---ERVCLVGRNGAGKSTLM-KILNGE----VLLDDG----RIIYEQ   64 (635)
T ss_pred             ceeEeCcEEEECCC---CEEEEECCCCCCHHHHH-HHHcCC----CCCCCe----EEEeCC
Confidence            45789999999999   99999999999999999 888886    456667    566665

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.63  E-value=1.1e-07  Score=70.63  Aligned_cols=51  Identities=29%  Similarity=0.408  Sum_probs=42.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    .+.++|..+
T Consensus       338 ~~l~~vs~~i~~G---e~~~lvG~nGsGKSTLl-k~i~Gl----~~p~~G----~I~~~g~~i  388 (623)
T PRK10261        338 HAVEKVSFDLWPG---ETLSLVGESGSGKSTTG-RALLRL----VESQGG----EIIFNGQRI  388 (623)
T ss_pred             EEEeeeEeEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCc----EEEECCEEC
Confidence            5789999999999   99999999999999999 878776    356777    667776543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.63  E-value=1.6e-07  Score=70.86  Aligned_cols=56  Identities=23%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      .+++++|.++||||||+++++....  ..++.++ .+.+...+.+++..+  .+|||+|..
T Consensus       451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~--~liDTaG~~  509 (712)
T PRK09518        451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDW--LFIDTAGIK  509 (712)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEE--EEEECCCcc
Confidence            7999999999999999999998763  3445444 333445667787654  589999964

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=1.4e-07  Score=63.24  Aligned_cols=43  Identities=19%  Similarity=0.321  Sum_probs=37.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      ...++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|..|
T Consensus        23 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~iaG~----~~~~~G   65 (257)
T PRK14246         23 KAILKDITIKIPNN---SIFGIMGPSGSGKSTLL-KVLNRL----IEIYDS   65 (257)
T ss_pred             ceeEeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCcC
Confidence            45689999999999   99999999999999999 888886    455554

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.63  E-value=9.7e-08  Score=63.73  Aligned_cols=53  Identities=32%  Similarity=0.584  Sum_probs=44.6

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+.++.++++++.+|   .-++++|++|+|||+|+ |.+.+.    ..|+.|    ++.++|.++
T Consensus        20 ~~~Ild~v~l~V~~G---ei~~iiGgSGsGKStlL-r~I~Gl----l~P~~G----eI~i~G~~i   72 (263)
T COG1127          20 DRVILDGVDLDVPRG---EILAILGGSGSGKSTLL-RLILGL----LRPDKG----EILIDGEDI   72 (263)
T ss_pred             CEEEecCceeeecCC---cEEEEECCCCcCHHHHH-HHHhcc----CCCCCC----eEEEcCcch
Confidence            366789999999999   99999999999999999 888887    467777    677777653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=1e-07  Score=69.17  Aligned_cols=52  Identities=17%  Similarity=0.431  Sum_probs=40.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+..+.  .|+.|    .+.++|..
T Consensus        19 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~--~~~~G----~i~~~g~~   70 (506)
T PRK13549         19 KALDNVSLKVRAG---EIVSLCGENGAGKSTLM-KVLSGVYPH--GTYEG----EIIFEGEE   70 (506)
T ss_pred             EeecceeEEEeCC---eEEEEECCCCCCHHHHH-HHHhCCCCC--CCCCe----EEEECCEE
Confidence            4789999999999   99999999999999999 888887321  12566    56666643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=1.4e-07  Score=64.18  Aligned_cols=54  Identities=19%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCC--CCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEES--PEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~--~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.... .+  |+.|    ++.++|..+
T Consensus        53 ~il~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~L~Gl~~~-~p~~~~~G----~I~~~g~~i  108 (286)
T PRK14275         53 EAVKKVNADILSK---YVTAIIGPSGCGKSTFL-RAINRMNDL-IPSCHTTG----ALMFDGEDI  108 (286)
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccc-CCCCCCce----EEEECCEEh
Confidence            4789999999999   99999999999999999 777775210 11  3566    677777644

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=1.4e-07  Score=63.78  Aligned_cols=56  Identities=18%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.++   ..++|+|++|+|||||+ +.+.+...+. ..|..|    ++.++|..+
T Consensus        34 ~~il~~vs~~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G----~i~~~g~~i   90 (276)
T PRK14271         34 KTVLDQVSMGFPAR---AVTSLMGPTGSGKTTFL-RTLNRMNDKVSGYRYSG----DVLLGGRSI   90 (276)
T ss_pred             EEEeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhccCCcCCCCCCce----EEEECCEEc
Confidence            45689999999999   99999999999999999 7777763211 013455    667777544

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.61  E-value=1.2e-07  Score=69.06  Aligned_cols=55  Identities=22%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+..+. .+.|+.|    ++.++|..+
T Consensus        23 ~~l~~isl~i~~G---e~~~iiG~nGsGKSTLl-~~i~G~~~~~~~~~~~G----~i~~~g~~i   78 (529)
T PRK15134         23 TVVNDVSLQIEAG---ETLALVGESGSGKSVTA-LSILRLLPSPPVVYPSG----DIRFHGESL   78 (529)
T ss_pred             eeeeceEEEEeCC---CEEEEECCCCCcHHHHH-HHHhcCCCCCcCCccce----EEEECCEec
Confidence            5789999999999   99999999999999999 888877432 1123456    677777654

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.61  E-value=1e-07  Score=70.30  Aligned_cols=51  Identities=25%  Similarity=0.423  Sum_probs=43.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++.++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       349 ~~l~~i~~~i~~G---~~~~ivG~sGsGKSTL~-~ll~g~----~~~~~G----~i~~~g~~~  399 (585)
T TIGR01192       349 QGVFDVSFEAKAG---QTVAIVGPTGAGKTTLI-NLLQRV----YDPTVG----QILIDGIDI  399 (585)
T ss_pred             ccccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHccC----CCCCCC----EEEECCEEh
Confidence            4689999999999   99999999999999999 778776    577777    677777654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=1.9e-07  Score=62.10  Aligned_cols=56  Identities=14%  Similarity=0.176  Sum_probs=41.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..++.|    ++.++|..+
T Consensus        18 ~~~l~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~~   74 (252)
T PRK14255         18 FEALKGIDLDFNQN---EITALIGPSGCGKSTYL-RTLNRMNDLIPGVTITG----NVSLRGQNI   74 (252)
T ss_pred             eeEEecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcccccCCCCCccc----EEEEcCEEc
Confidence            35789999999999   99999999999999999 8887753210 112356    566776544

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=1.2e-07  Score=69.13  Aligned_cols=49  Identities=22%  Similarity=0.492  Sum_probs=40.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++
T Consensus        14 ~~il~~vsl~i~~G---e~~~liG~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~~   62 (530)
T PRK15064         14 KPLFENISVKFGGG---NRYGLIGANGCGKSTFM-KILGGD----LEPSAG----NVSLDP   62 (530)
T ss_pred             cEeEeCCEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEecC
Confidence            45789999999999   99999999999999999 888886    345666    555554

>KOG0055|consensus

Probab=98.61  E-value=5.3e-08  Score=76.13  Aligned_cols=52  Identities=23%  Similarity=0.429  Sum_probs=46.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..+++||++||||||++ .++.+.    |+|..|    .+.+||.++
T Consensus      1003 ~~Il~~l~l~i~~G---qTvALVG~SGsGKSTvI-~LLeRf----Ydp~~G----~V~IDg~di 1054 (1228)
T KOG0055|consen 1003 VPVLNNLSLSIRAG---QTVALVGPSGSGKSTVI-SLLERF----YDPDAG----KVKIDGVDI 1054 (1228)
T ss_pred             chhhcCCcEEecCC---CEEEEECCCCCCHHHHH-HHHHHh----cCCCCC----eEEECCccc
Confidence            55689999999999   99999999999999999 888877    899988    889998776

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.61  E-value=1.3e-07  Score=63.42  Aligned_cols=56  Identities=16%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..... ..|+.|    ++.++|..+
T Consensus        23 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~i   79 (264)
T PRK14243         23 FLAVKNVWLDIPKN---QITAFIGPSGCGKSTIL-RCFNRLNDLIPGFRVEG----KVTFHGKNL   79 (264)
T ss_pred             EEEeecceEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhhcccCCCCCce----EEEECCEEc
Confidence            35689999999999   99999999999999999 7777652110 013455    566676544

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.61  E-value=9.9e-08  Score=68.89  Aligned_cols=49  Identities=29%  Similarity=0.247  Sum_probs=40.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++.
T Consensus        17 ~il~~vsl~i~~G---e~~~liG~nGsGKSTLl-~~l~G~----~~p~~G----~i~~~~~   65 (490)
T PRK10938         17 KTLQLPSLTLNAG---DSWAFVGANGSGKSALA-RALAGE----LPLLSG----ERQSQFS   65 (490)
T ss_pred             eecccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhcc----CCCCCc----eEEECCc
Confidence            4789999999999   99999999999999999 888886    346666    4455443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.61  E-value=1e-07  Score=69.09  Aligned_cols=51  Identities=24%  Similarity=0.490  Sum_probs=41.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    .+.++|+.+
T Consensus       267 ~~l~~isl~i~~G---e~~~iiG~NGsGKSTLl-k~l~G~----~~p~~G----~i~~~g~~~  317 (501)
T PRK11288        267 GLREPISFSVRAG---EIVGLFGLVGAGRSELM-KLLYGA----TRRTAG----QVYLDGKPI  317 (501)
T ss_pred             CcccceeEEEeCC---cEEEEEcCCCCCHHHHH-HHHcCC----CcCCCc----eEEECCEEC
Confidence            3679999999999   99999999999999999 777776    356666    566666543

>PLN03232 ABC transporter C family member; Provisional

Probab=98.61  E-value=9.5e-08  Score=76.67  Aligned_cols=52  Identities=21%  Similarity=0.381  Sum_probs=45.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .|+++||++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus      1249 ~~vL~~isl~I~~G---ekvaIVG~SGSGKSTL~-~lL~rl----~~p~~G----~I~IdG~di 1300 (1495)
T PLN03232       1249 PPVLHGLSFFVSPS---EKVGVVGRTGAGKSSML-NALFRI----VELEKG----RIMIDDCDV 1300 (1495)
T ss_pred             CcccccceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCCc----eEEECCEEh
Confidence            35789999999999   99999999999999999 777776    678888    889998765

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.60  E-value=1.5e-07  Score=65.81  Aligned_cols=48  Identities=25%  Similarity=0.475  Sum_probs=39.7

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    .+.++|..+
T Consensus        15 ~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~iaGl----~~p~~G----~I~~~g~~~   62 (352)
T PRK11144         15 LTVNLTLPAQ---GITAIFGRSGAGKTSLI-NAISGL----TRPQKG----RIVLNGRVL   62 (352)
T ss_pred             EEEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEc
Confidence            3789999999   99999999999999999 888886    456677    667777544

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.60  E-value=1.5e-07  Score=65.81  Aligned_cols=47  Identities=34%  Similarity=0.652  Sum_probs=39.5

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        15 ~isl~i~~G---ei~~l~G~nGsGKSTLl-~~iaGl----~~p~~G----~I~~~g~~i   61 (354)
T TIGR02142        15 DADFTLPGQ---GVTAIFGRSGSGKTTLI-RLIAGL----TRPDEG----EIVLNGRTL   61 (354)
T ss_pred             EEEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            789999999   89999999999999999 888887    456677    667777654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=1.5e-07  Score=62.42  Aligned_cols=56  Identities=18%  Similarity=0.254  Sum_probs=41.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+..... ..|..|    ++.++|..+
T Consensus        16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~~   72 (249)
T PRK14253         16 NQALKSINLPIPAR---QVTALIGPSGCGKSTLL-RCLNRMNDLIEGVKITG----KLTMDGEDI   72 (249)
T ss_pred             eeeeecceEEecCC---CEEEEECCCCCCHHHHH-HHHHhhcccccCCCCce----EEEECCEEc
Confidence            35789999999999   99999999999999999 7777763221 112345    566666543

>PLN03130 ABC transporter C family member; Provisional

Probab=98.60  E-value=1.2e-07  Score=76.67  Aligned_cols=51  Identities=25%  Similarity=0.462  Sum_probs=45.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   .|+++||++|+|||||+ +.+.+.    |+|+.|    ++.+||.++
T Consensus      1253 ~VL~~is~~I~~G---ekVaIVGrSGSGKSTLl-~lL~rl----~~p~~G----~I~IDG~dI 1303 (1622)
T PLN03130       1253 PVLHGLSFEISPS---EKVGIVGRTGAGKSSML-NALFRI----VELERG----RILIDGCDI 1303 (1622)
T ss_pred             ceecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhCc----CCCCCc----eEEECCEec
Confidence            5789999999999   99999999999999999 777777    678888    889999765

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.60  E-value=1.3e-07  Score=68.42  Aligned_cols=51  Identities=20%  Similarity=0.403  Sum_probs=41.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    .+.++|+.+
T Consensus       262 ~~l~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~i  312 (491)
T PRK10982        262 PSIRDVSFDLHKG---EILGIAGLVGAKRTDIV-ETLFGI----REKSAG----TITLHGKKI  312 (491)
T ss_pred             cccceeeEEEeCC---cEEEEecCCCCCHHHHH-HHHcCC----CcCCcc----EEEECCEEC
Confidence            4689999999999   99999999999999999 777776    356666    566666543

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.60  E-value=1e-07  Score=62.94  Aligned_cols=52  Identities=29%  Similarity=0.553  Sum_probs=42.3

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      -+++++++++++.+|   .-++++|+||+|||||+ +.+.+.+    .|..|    ++.++|..
T Consensus        13 Gr~ll~~vsl~~~pG---ev~ailGPNGAGKSTlL-k~LsGel----~p~~G----~v~~~g~~   64 (259)
T COG4559          13 GRRLLDGVSLDLRPG---EVLAILGPNGAGKSTLL-KALSGEL----SPDSG----EVTLNGVP   64 (259)
T ss_pred             cceeccCcceeccCC---cEEEEECCCCccHHHHH-HHhhCcc----CCCCC----eEeeCCcC
Confidence            367789999999999   99999999999999999 7777763    56666    56666643

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.59  E-value=1.8e-07  Score=63.02  Aligned_cols=56  Identities=18%  Similarity=0.293  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.... ...|+.|    ++.++|..+
T Consensus        38 ~~il~~vs~~i~~G---e~~~I~G~nGsGKSTLl-~~laGl~~~~~~~~~~G----~i~i~g~~i   94 (272)
T PRK14236         38 KQALFDISMRIPKN---RVTAFIGPSGCGKSTLL-RCFNRMNDLVDNCRIEG----EIRLDGQNI   94 (272)
T ss_pred             eeEeeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhcCCCccCCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 778776421 0113556    566776544

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.59  E-value=2.2e-07  Score=61.89  Aligned_cols=52  Identities=27%  Similarity=0.539  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.++   ..++++|++|+|||||+ +.+++.    ..|+.|    .+.++|..+
T Consensus        17 ~~~l~~v~~~i~~G---e~~~i~G~nGsGKSTL~-~~l~GL----l~p~~G----~v~~~g~~~   68 (235)
T COG1122          17 KAALKDVSLEIEKG---ERVLLIGPNGSGKSTLL-KLLNGL----LKPTSG----EVLVDGLDT   68 (235)
T ss_pred             ceeeeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHcCc----CcCCCC----EEEECCeec
Confidence            36789999999999   99999999999999999 888888    466666    566666543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=98.59  E-value=9.8e-08  Score=59.35  Aligned_cols=52  Identities=17%  Similarity=0.065  Sum_probs=33.6

Q ss_pred             EECCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEEC-CeEEEEEEEecCCCC
Q psy6968          29 IVGSLASGKSALVHRFMTGAF-LQEESPE-GGRFKKEVVID-GHSHLLLIRDEGVPP   82 (93)
Q Consensus        29 lvG~~g~GKtsl~~r~~~~~f-~~~~~~t-~~~~~~~~~~~-g~~i~~~i~d~~g~~   82 (93)
                      ++|++|||||||++++++..+ ...+..+ .......+.++ +  ..+.+|||+|..
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~   55 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLI   55 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccc
Confidence            589999999999988777653 2223222 22222234555 4  467899999974

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.59  E-value=1.2e-07  Score=68.93  Aligned_cols=51  Identities=18%  Similarity=0.412  Sum_probs=41.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    .+.++|.++
T Consensus       277 ~~l~~isl~i~~G---e~~~l~G~NGsGKSTLl-~~i~Gl----~~p~~G----~i~~~g~~i  327 (510)
T PRK15439        277 EGFRNISLEVRAG---EILGLAGVVGAGRTELA-ETLYGL----RPARGG----RIMLNGKEI  327 (510)
T ss_pred             CCccceeEEEcCC---cEEEEECCCCCCHHHHH-HHHcCC----CCCCCc----EEEECCEEC
Confidence            3578999999999   99999999999999999 888876    356666    566666543

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.59  E-value=1.3e-07  Score=61.45  Aligned_cols=51  Identities=35%  Similarity=0.595  Sum_probs=42.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++.++|++.++   -.++++|.+|+|||||+ +++.+-    .+||.|    ++.+||..+
T Consensus        27 ~AV~~vSFtL~~~---QTlaiIG~NGSGKSTLa-kMlaGm----i~PTsG----~il~n~~~L   77 (267)
T COG4167          27 EAVKPVSFTLREG---QTLAIIGENGSGKSTLA-KMLAGM----IEPTSG----EILINDHPL   77 (267)
T ss_pred             hcccceEEEecCC---cEEEEEccCCCcHhHHH-HHHhcc----cCCCCc----eEEECCccc
Confidence            3478899999999   89999999999999999 888887    578888    666766544

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.59  E-value=1.9e-07  Score=62.16  Aligned_cols=49  Identities=24%  Similarity=0.363  Sum_probs=39.9

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++++.+|   ..++++|++|+|||||+ +.+.+..     |..|    ++.++|..+
T Consensus        11 ~l~~vsl~i~~G---ei~~l~G~nGsGKSTLl-~~l~Gl~-----~~~G----~i~~~g~~i   59 (248)
T PRK03695         11 RLGPLSAEVRAG---EILHLVGPNGAGKSTLL-ARMAGLL-----PGSG----SIQFAGQPL   59 (248)
T ss_pred             eecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHcCCC-----CCCe----EEEECCEec
Confidence            589999999999   99999999999999999 8888763     2245    566776543

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.58  E-value=8.4e-08  Score=72.50  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=47.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--C--cceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP--E--GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..|+++|..++|||||+.++....+.....+  |  .+.|...+..++....+.+|||+|++.|..++
T Consensus       245 p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr  312 (742)
T CHL00189        245 PIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMR  312 (742)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHH
Confidence            6899999999999999998887776543322  2  23343344455566889999999999887654

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=2.7e-07  Score=62.36  Aligned_cols=55  Identities=13%  Similarity=0.171  Sum_probs=41.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+..... ..|..|    ++.++|..+
T Consensus        34 ~~l~~vs~~i~~G---e~~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~i~~~g~~l   89 (274)
T PRK14265         34 LALVDVHLKIPAK---KIIAFIGPSGCGKSTLL-RCFNRMNDLIPGAKVEG----RLLYRDRNI   89 (274)
T ss_pred             EEEeeeeeEEcCC---CEEEEECCCCCCHHHHH-HHHhcccccccCCCcCc----eEEECCEec
Confidence            4789999999999   99999999999999999 7777763211 012355    566776543

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.58  E-value=2.2e-07  Score=68.95  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCC------cc-ee-EEEEE--E---CCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA-------FLQEESPE------GG-RF-KKEVV--I---DGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~-------f~~~~~~t------~~-~~-~~~~~--~---~g~~i~~~i~d~~g~~~~   84 (93)
                      -.++++|..++|||||+.|++...       +...+..+      .+ .+ .+.+.  +   ++..+.+.+|||+|+++|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            478999999999999999998642       22333222      11 12 22222  2   577899999999999998


Q ss_pred             CC
Q psy6968          85 QP   86 (93)
Q Consensus        85 ~~   86 (93)
                      ..
T Consensus        84 ~~   85 (595)
T TIGR01393        84 SY   85 (595)
T ss_pred             HH
Confidence            53

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=2.5e-07  Score=61.44  Aligned_cols=56  Identities=14%  Similarity=0.274  Sum_probs=41.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   ..++++|++|+|||||+ +.+.+.... ...|..|    ++.++|..+
T Consensus        16 ~~~l~~~s~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G----~v~~~g~~i   72 (250)
T PRK14266         16 AHILKNVNLDIPKN---SVTALIGPSGCGKSTFI-RTLNRMNDLIPGFRHEG----HIYLDGVDI   72 (250)
T ss_pred             eEEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhhccCCCCCCcc----EEEECCEEc
Confidence            35789999999999   99999999999999999 777764211 1113456    667777554

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=2.3e-07  Score=63.63  Aligned_cols=56  Identities=18%  Similarity=0.309  Sum_probs=42.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++|+|++|+|||||+ +.+.+.... .+.|+.|    ++.++|..+
T Consensus        58 ~~iL~~is~~i~~G---e~~~IvG~nGsGKSTLl-~~L~Gl~~~~~~~p~~G----~I~i~g~~i  114 (305)
T PRK14264         58 DHALKGVSMDIPEK---SVTALIGPSGCGKSTFL-RCLNRMNDRIKAARIDG----SVELDGQDI  114 (305)
T ss_pred             eeeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence            35689999999999   99999999999999999 777776321 1124566    667777544

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.57  E-value=2.2e-07  Score=69.12  Aligned_cols=49  Identities=33%  Similarity=0.350  Sum_probs=40.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|..|    .+.++|.
T Consensus        30 ~~l~~is~~v~~G---e~~~lvG~nGsGKSTLl-~~l~Gl----l~p~~G----~i~~~g~   78 (623)
T PRK10261         30 AAVRNLSFSLQRG---ETLAIVGESGSGKSVTA-LALMRL----LEQAGG----LVQCDKM   78 (623)
T ss_pred             eEEEeeEEEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCCe----EEEECCE
Confidence            5789999999999   99999999999999999 888887    345566    4555553

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.57  E-value=1.9e-07  Score=64.33  Aligned_cols=47  Identities=23%  Similarity=0.581  Sum_probs=40.7

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      +.++++.+..+   .-++++|++|+||||++ |.+.|.    ..|+.|    .+.++|+
T Consensus        18 ~~di~l~i~~G---e~vaLlGpSGaGKsTlL-RiIAGL----e~p~~G----~I~~~~~   64 (345)
T COG1118          18 LDDISLDIKSG---ELVALLGPSGAGKSTLL-RIIAGL----ETPDAG----RIRLNGR   64 (345)
T ss_pred             cccceeeecCC---cEEEEECCCCCcHHHHH-HHHhCc----CCCCCc----eEEECCE
Confidence            56899999999   99999999999999999 999998    567777    6666665

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.57  E-value=1.8e-07  Score=67.65  Aligned_cols=53  Identities=19%  Similarity=0.394  Sum_probs=41.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+....  .|+.|    .+.++|..
T Consensus        14 ~~il~~isl~i~~G---e~~~liG~nGsGKSTLl-~~i~G~~~~--~~~~G----~i~~~g~~   66 (500)
T TIGR02633        14 VKALDGIDLEVRPG---ECVGLCGENGAGKSTLM-KILSGVYPH--GTWDG----EIYWSGSP   66 (500)
T ss_pred             eEeecceEEEEeCC---cEEEEECCCCCCHHHHH-HHHhCCCCC--CCCCe----EEEECCEE
Confidence            35789999999999   99999999999999999 888776321  02456    56666643

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=2.2e-07  Score=62.34  Aligned_cols=54  Identities=13%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+...... .++.|    ++.++|..
T Consensus        30 ~vl~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~sG----~i~~~g~~   84 (265)
T PRK14252         30 QALKNINMMVHEK---QVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEG----EIILHPDN   84 (265)
T ss_pred             eeeeeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcccCCCCCCCccc----EEEEcCcc
Confidence            5789999999999   99999999999999999 77777632110 02455    56666543

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=2.1e-07  Score=62.20  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=41.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+....+. |  +.|    ++.++|..+
T Consensus        21 ~il~~isl~i~~G---e~~~l~G~nGsGKSTLl-k~l~Gl~~~~~-~~~~~G----~i~~~g~~i   76 (259)
T PRK14260         21 KAIEGISMDIYRN---KVTAIIGPSGCGKSTFI-KTLNRISELEG-PVKVEG----VVDFFGQNI   76 (259)
T ss_pred             EeecceEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhhcCccc-CCccce----EEEECCEec
Confidence            4789999999999   99999999999999999 77777632110 2  345    667777544

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=2.7e-07  Score=61.36  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+... ...|  +.|    ++.++|..+
T Consensus        16 ~~~l~~vs~~i~~G---e~~~i~G~nGsGKSTLl-~~i~Gl~~-~~~~~~~~G----~i~~~g~~~   72 (250)
T PRK14245         16 FHALKGISMEIEEK---SVVAFIGPSGCGKSTFL-RLFNRMND-LIPATRLEG----EIRIDGRNI   72 (250)
T ss_pred             EeEEeeeeEEEeCC---CEEEEECCCCCCHHHHH-HHHhhhhc-ccCCCCCce----EEEECCEec
Confidence            35789999999999   99999999999999999 77766310 0122  356    677777654

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.56  E-value=2.6e-07  Score=68.77  Aligned_cols=43  Identities=21%  Similarity=0.485  Sum_probs=37.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      ..+++++++.+.+|   .+++|+|++|+|||||+ +.+.+.    ..|+.|
T Consensus       332 ~~il~~vsl~i~~G---e~~~l~G~NGsGKSTLl-k~l~G~----~~p~~G  374 (635)
T PRK11147        332 KQLVKDFSAQVQRG---DKIALIGPNGCGKTTLL-KLMLGQ----LQADSG  374 (635)
T ss_pred             eEEEcCcEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc
Confidence            34789999999999   99999999999999999 777776    456666

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.56  E-value=1.7e-07  Score=75.39  Aligned_cols=51  Identities=27%  Similarity=0.411  Sum_probs=45.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   .|+++||++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus      1300 ~vL~~is~~I~~G---ekiaIVGrTGsGKSTL~-~lL~rl----~~~~~G----~I~IdG~dI 1350 (1522)
T TIGR00957      1300 LVLRHINVTIHGG---EKVGIVGRTGAGKSSLT-LGLFRI----NESAEG----EIIIDGLNI 1350 (1522)
T ss_pred             ccccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----ccCCCC----eEEECCEEc
Confidence            5789999999999   99999999999999999 777776    678888    889999766

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.56  E-value=1.8e-07  Score=68.41  Aligned_cols=50  Identities=36%  Similarity=0.640  Sum_probs=41.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ..+++++|.+.+|   ..+++||++||||||+. |.+.+.    ..|+.|    .+.++|.+
T Consensus       305 ~Av~~VSf~l~~G---E~lglVGeSGsGKSTla-r~i~gL----~~P~~G----~i~~~g~~  354 (539)
T COG1123         305 KAVDDVSFDLREG---ETLGLVGESGSGKSTLA-RILAGL----LPPSSG----SIIFDGQD  354 (539)
T ss_pred             eeeeeeeeEecCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEEeCcc
Confidence            4589999999999   99999999999999999 888887    467777    55555543

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=2.9e-07  Score=61.70  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+..
T Consensus        21 ~il~~is~~i~~G---e~~~I~G~nGsGKSTLl-~~l~Gl~   57 (261)
T PRK14258         21 KILEGVSMEIYQS---KVTAIIGPSGCGKSTFL-KCLNRMN   57 (261)
T ss_pred             eEeeceEEEEcCC---cEEEEECCCCCCHHHHH-HHHhccc
Confidence            4689999999999   99999999999999999 8888763

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.55  E-value=2.5e-07  Score=62.79  Aligned_cols=51  Identities=27%  Similarity=0.528  Sum_probs=41.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.+|   .+++++|++|+|||||+ +.+.+..    . ..|    ++.++|..+
T Consensus        17 ~~~l~~isl~I~~G---e~~~IvG~nGsGKSTLl-~~L~gl~----~-~~G----~I~i~g~~i   67 (275)
T cd03289          17 NAVLENISFSISPG---QRVGLLGRTGSGKSTLL-SAFLRLL----N-TEG----DIQIDGVSW   67 (275)
T ss_pred             CcceeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhhhc----C-CCc----EEEECCEEh
Confidence            34789999999999   99999999999999999 8888773    2 346    677777544

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.55  E-value=2e-07  Score=67.45  Aligned_cols=51  Identities=31%  Similarity=0.531  Sum_probs=41.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+..    .| +.|    ++.++|+.+
T Consensus       274 ~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~l~G~~----~p~~~G----~i~~~g~~~  325 (500)
T TIGR02633       274 KRVDDVSFSLRRG---EILGVAGLVGAGRTELV-QALFGAY----PGKFEG----NVFINGKPV  325 (500)
T ss_pred             cccccceeEEeCC---cEEEEeCCCCCCHHHHH-HHHhCCC----CCCCCe----EEEECCEEC
Confidence            4789999999999   99999999999999999 7787763    43 466    566666543

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PTZ00243 ABC transporter; Provisional

Probab=98.55  E-value=2.1e-07  Score=74.99  Aligned_cols=52  Identities=29%  Similarity=0.412  Sum_probs=45.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      .+++++++.+.+|   .|+++||++|+|||||+ ..+.+.    ++|+.|    ++.+||.++.
T Consensus      1324 ~vL~~vsf~I~~G---ekVaIVGrTGSGKSTLl-~lLlrl----~~p~~G----~I~IDG~di~ 1375 (1560)
T PTZ00243       1324 LVLRGVSFRIAPR---EKVGIVGRTGSGKSTLL-LTFMRM----VEVCGG----EIRVNGREIG 1375 (1560)
T ss_pred             ceeecceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEcc
Confidence            3789999999999   99999999999999999 777776    678888    7899997763

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=4.1e-07  Score=63.12  Aligned_cols=55  Identities=16%  Similarity=0.252  Sum_probs=42.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   .+++++|++|+|||||+ +.+.+..... ..|..|    .+.++|..+
T Consensus        96 ~~L~~is~~I~~G---e~v~IvG~~GsGKSTLl-~~L~g~~~~~~~~p~~G----~I~idG~~i  151 (329)
T PRK14257         96 HVLHDLNLDIKRN---KVTAFIGPSGCGKSTFL-RNLNQLNDLIEGTSHEG----EIYFLGTNT  151 (329)
T ss_pred             eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhccccccCCCCCce----EEEECCEEc
Confidence            4789999999999   99999999999999999 7777653211 124456    677787765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=2.3e-07  Score=67.30  Aligned_cols=51  Identities=35%  Similarity=0.530  Sum_probs=41.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEES-PEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~-~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.+.    .. |+.|    ++.++|+.+
T Consensus       276 ~vl~~vsl~i~~G---e~~~l~G~NGsGKSTLl-k~i~Gl----~~~~~~G----~i~~~g~~~  327 (506)
T PRK13549        276 KRVDDVSFSLRRG---EILGIAGLVGAGRTELV-QCLFGA----YPGRWEG----EIFIDGKPV  327 (506)
T ss_pred             ccccceeeEEcCC---cEEEEeCCCCCCHHHHH-HHHhCC----CCCCCCc----EEEECCEEC
Confidence            4789999999999   99999999999999999 778776    34 3566    566666543

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.54  E-value=2.5e-07  Score=67.93  Aligned_cols=43  Identities=23%  Similarity=0.490  Sum_probs=37.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      +.+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|
T Consensus        20 ~~il~~vs~~i~~G---e~~~iiG~NGsGKSTLl-k~i~G~----~~p~~G   62 (556)
T PRK11819         20 KQILKDISLSFFPG---AKIGVLGLNGAGKSTLL-RIMAGV----DKEFEG   62 (556)
T ss_pred             CeeeeCceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc
Confidence            45789999999999   99999999999999999 888887    356666

>cd00881 GTP_translation_factor GTP translation factor family

Probab=98.53  E-value=2.6e-07  Score=57.95  Aligned_cols=60  Identities=17%  Similarity=0.183  Sum_probs=38.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--------------c-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG--------------G-RF-KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~--------------~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      +++++|+.|+|||||+..++...+.....+..              + .. .....+......+.+|||+|+.++.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~   76 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS   76 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH
Confidence            47899999999999999988877654332210              0 00 0011122224678999999987764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.53  E-value=2.4e-07  Score=66.84  Aligned_cols=51  Identities=22%  Similarity=0.451  Sum_probs=45.4

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLL   73 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~   73 (93)
                      ..++++++.+|   .--+++|+||+|||||+ +.+.+.    |.|+.|    ++.++|+++.+
T Consensus        20 nd~V~l~v~~G---eIHaLLGENGAGKSTLm-~iL~G~----~~P~~G----eI~v~G~~v~~   70 (501)
T COG3845          20 NDDVSLSVKKG---EIHALLGENGAGKSTLM-KILFGL----YQPDSG----EIRVDGKEVRI   70 (501)
T ss_pred             cCceeeeecCC---cEEEEeccCCCCHHHHH-HHHhCc----ccCCcc----eEEECCEEecc
Confidence            57889999999   88899999999999999 888887    889998    88999988753

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.52  E-value=1.5e-07  Score=68.40  Aligned_cols=58  Identities=33%  Similarity=0.520  Sum_probs=49.6

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEec
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDE   78 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~   78 (93)
                      ++.++++.+|.+.+|   .-+.+||++|+|||||. |.+.+.    ..|+.|    .+.+||-++  .-||.
T Consensus       348 ~~pil~~isF~l~~G---~~lgIIGPSgSGKSTLa-R~lvG~----w~p~~G----~VRLDga~l--~qWd~  405 (580)
T COG4618         348 KKPILKGISFALQAG---EALGIIGPSGSGKSTLA-RLLVGI----WPPTSG----SVRLDGADL--RQWDR  405 (580)
T ss_pred             CCcceecceeEecCC---ceEEEECCCCccHHHHH-HHHHcc----cccCCC----cEEecchhh--hcCCH
Confidence            467899999999999   99999999999999999 888887    567777    788888644  56774

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.52  E-value=8.8e-07  Score=52.27  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=35.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      +|+++|..|+|||||++.++.....  ....++ .......+.+++..+  .++||.|-.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~   58 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGIN   58 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCS
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCc
Confidence            5899999999999999877764321  112222 221123456677655  599999854

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.52  E-value=2.8e-07  Score=67.54  Aligned_cols=43  Identities=23%  Similarity=0.499  Sum_probs=37.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      +.+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|
T Consensus        18 ~~il~~is~~i~~G---e~~~liG~NGsGKSTLl-~~i~G~----~~p~~G   60 (552)
T TIGR03719        18 KEILKDISLSFFPG---AKIGVLGLNGAGKSTLL-RIMAGV----DKEFNG   60 (552)
T ss_pred             CeeecCceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc
Confidence            35789999999999   99999999999999999 888887    356666

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.51  E-value=4e-07  Score=66.74  Aligned_cols=50  Identities=30%  Similarity=0.492  Sum_probs=42.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.|.    ..|+.|    ++.++|..
T Consensus        38 ~IL~nVSfsI~~G---EivgIiGpNGSGKSTLL-kiLaGL----l~P~sG----eI~I~G~~   87 (549)
T PRK13545         38 YALNNISFEVPEG---EIVGIIGLNGSGKSTLS-NLIAGV----TMPNKG----TVDIKGSA   87 (549)
T ss_pred             eEEeeeEEEEeCC---CEEEEEcCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEe
Confidence            4789999999999   99999999999999999 888886    456677    67777754

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.51  E-value=2.6e-07  Score=61.43  Aligned_cols=58  Identities=17%  Similarity=0.144  Sum_probs=33.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEE----SPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~----~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      |++++|+.++||||+. +.+.....+..    .||...-...+... ..+.+++||..||..+-
T Consensus         1 KiLLmG~~~SGKTSi~-~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~   62 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIR-SVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFM   62 (232)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTT
T ss_pred             CEEEEcCCCCChhhHH-HHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccc
Confidence            7999999999999999 77766543221    12221101122222 34689999999998763

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.51  E-value=3.2e-07  Score=66.92  Aligned_cols=48  Identities=27%  Similarity=0.466  Sum_probs=40.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++
T Consensus       333 ~~l~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~i~G~----~~p~~G----~i~~~~  380 (530)
T PRK15064        333 PLFKNLNLLLEAG---ERLAIIGENGVGKTTLL-RTLVGE----LEPDSG----TVKWSE  380 (530)
T ss_pred             eeecCcEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECC
Confidence            4689999999999   99999999999999999 888776    456666    566665

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.51  E-value=1.8e-07  Score=63.60  Aligned_cols=47  Identities=28%  Similarity=0.546  Sum_probs=39.6

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      .++++++++++|   ..++++|++|+||||.+ ++++|.    ..|+.|    .+.++|
T Consensus        39 AVqdisf~IP~G---~ivgflGaNGAGKSTtL-KmLTGl----l~p~~G----~v~V~G   85 (325)
T COG4586          39 AVQDISFEIPKG---EIVGFLGANGAGKSTTL-KMLTGL----LLPTSG----KVRVNG   85 (325)
T ss_pred             hhheeeeecCCC---cEEEEEcCCCCcchhhH-HHHhCc----cccCCC----eEEecC
Confidence            478999999999   99999999999999999 888887    467766    455544

>KOG0056|consensus

Probab=98.50  E-value=1.2e-07  Score=69.07  Aligned_cols=52  Identities=25%  Similarity=0.502  Sum_probs=44.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +..+++++|.+++|   -.+++||++|+||||++ |++-+.|    +.+.|    .+++||+++
T Consensus       551 k~vl~disF~v~pG---ktvAlVG~SGaGKSTim-RlLfRff----dv~sG----sI~iDgqdI  602 (790)
T KOG0056|consen  551 KPVLSDISFTVQPG---KTVALVGPSGAGKSTIM-RLLFRFF----DVNSG----SITIDGQDI  602 (790)
T ss_pred             CceeecceEEecCC---cEEEEECCCCCchhHHH-HHHHHHh----hccCc----eEEEcCchH
Confidence            56789999999999   89999999999999999 8888874    55566    688888765

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.50  E-value=4.2e-07  Score=66.30  Aligned_cols=51  Identities=31%  Similarity=0.412  Sum_probs=41.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..     |+.|    ++.++|+.+
T Consensus       299 ~~il~~isl~i~~G---e~~~i~G~nGsGKSTLl-k~l~Gl~-----~~~G----~i~~~g~~i  349 (529)
T PRK15134        299 NVVVKNISFTLRPG---ETLGLVGESGSGKSTTG-LALLRLI-----NSQG----EIWFDGQPL  349 (529)
T ss_pred             ceeeecceeEEcCC---CEEEEECCCCCCHHHHH-HHHhCcC-----CCCc----EEEECCEEc
Confidence            35789999999999   99999999999999999 7777762     3456    566776543

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.49  E-value=6.1e-07  Score=59.90  Aligned_cols=50  Identities=18%  Similarity=0.456  Sum_probs=36.7

Q ss_pred             eeeceeee-----CCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968          11 VTSHEFTL-----ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus        11 ~~~~~~~~-----~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      +.++++.+     .+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.+++..+.
T Consensus        10 ~~~~~l~~~~~~i~~G---e~~~i~G~NGsGKSTLl-k~L~G~----~~p~~G----~i~~~g~~i~   64 (246)
T cd03237          10 LGEFTLEVEGGSISES---EVIGILGPNGIGKTTFI-KMLAGV----LKPDEG----DIEIELDTVS   64 (246)
T ss_pred             cCcEEEEEecCCcCCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCCC----eEEECCceEE
Confidence            34455554     456   89999999999999999 888876    456677    5667775443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.49  E-value=3.2e-07  Score=63.59  Aligned_cols=49  Identities=31%  Similarity=0.494  Sum_probs=43.8

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +++.++++..|   .-.+++|-+|+|||||+ |.+++.    ++||.|    ++.++|+.+
T Consensus        44 v~~~sl~v~~G---eIfViMGLSGSGKSTLv-R~~NrL----iept~G----~ilv~g~di   92 (386)
T COG4175          44 VNDASLDVEEG---EIFVIMGLSGSGKSTLV-RLLNRL----IEPTRG----EILVDGKDI   92 (386)
T ss_pred             eccceeeecCC---eEEEEEecCCCCHHHHH-HHHhcc----CCCCCc----eEEECCcch
Confidence            58899999999   99999999999999999 999988    689988    788888744

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.49  E-value=1.5e-07  Score=63.31  Aligned_cols=61  Identities=21%  Similarity=0.343  Sum_probs=51.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGV   80 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g   80 (93)
                      ...+++.++.+.+|   .-..++|++|+||||.+ |++-+.    ..|+.|    .+.++|.++.-.+.|..|
T Consensus        15 k~av~~isf~v~~G---~i~GllG~NGAGKTTtf-RmILgl----le~~~G----~I~~~g~~~~~~~~~rIG   75 (300)
T COG4152          15 KKAVDNISFEVPPG---EIFGLLGPNGAGKTTTF-RMILGL----LEPTEG----EITWNGGPLSQEIKNRIG   75 (300)
T ss_pred             eeeecceeeeecCC---eEEEeecCCCCCccchH-HHHhcc----CCccCc----eEEEcCcchhhhhhhhcc
Confidence            34589999999999   89999999999999999 888887    467888    899999988777666554

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=3.1e-07  Score=67.24  Aligned_cols=51  Identities=24%  Similarity=0.437  Sum_probs=43.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++.+++++++   .++++||.+|||||||+ ..+.|.    ..|+.|    ++.+||.+.
T Consensus       335 ~~l~~l~~t~~~g---~~talvG~SGaGKSTLl-~lL~G~----~~~~~G----~I~vng~~l  385 (559)
T COG4988         335 PALSDLNLTIKAG---QLTALVGASGAGKSTLL-NLLLGF----LAPTQG----EIRVNGIDL  385 (559)
T ss_pred             cccCCceeEecCC---cEEEEECCCCCCHHHHH-HHHhCc----CCCCCc----eEEECCccc
Confidence            5688999999999   99999999999999999 777776    466778    778887654

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.49  E-value=3.2e-07  Score=60.18  Aligned_cols=42  Identities=31%  Similarity=0.544  Sum_probs=33.7

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ++.+|   ..++++|++|+|||||+ +.+.+.    +.|..|    ++.++|+.
T Consensus         2 ~i~~G---e~~~l~G~nGsGKSTLl-~~l~G~----~~~~~G----~i~~~g~~   43 (223)
T TIGR03771         2 SADKG---ELLGLLGPNGAGKTTLL-RAILGL----IPPAKG----TVKVAGAS   43 (223)
T ss_pred             ccCCC---cEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCcc
Confidence            45677   89999999999999999 888886    456667    67777754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.48  E-value=2.6e-07  Score=65.79  Aligned_cols=50  Identities=32%  Similarity=0.523  Sum_probs=44.1

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      +..++.++.+|   .-|.++|.+||||||++ .+++|.    |.|..|    ++.+||++|.
T Consensus       339 vgPiNl~ikrG---elvFliG~NGsGKST~~-~LLtGL----~~PqsG----~I~ldg~pV~  388 (546)
T COG4615         339 VGPINLTIKRG---ELVFLIGGNGSGKSTLA-MLLTGL----YQPQSG----EILLDGKPVS  388 (546)
T ss_pred             ecceeeEEecC---cEEEEECCCCCcHHHHH-HHHhcc----cCCCCC----ceeECCccCC
Confidence            57788889999   99999999999999999 888888    678878    7889998774

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.48  E-value=3.3e-07  Score=66.22  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.
T Consensus       274 ~il~~vsl~i~~G---e~~~i~G~NGsGKSTLl-~~l~G~  309 (490)
T PRK10938        274 PILHNLSWQVNPG---EHWQIVGPNGAGKSTLL-SLITGD  309 (490)
T ss_pred             eEEeeceEEEcCC---CEEEEECCCCCCHHHHH-HHHcCC
Confidence            4789999999999   99999999999999999 778775

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=3.9e-07  Score=68.00  Aligned_cols=47  Identities=28%  Similarity=0.583  Sum_probs=39.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID   67 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~   67 (93)
                      .+++++++.+.+|   .+++++|++|+|||||+ +.+.+.    ..|+.|    .+.++
T Consensus       326 ~il~~isl~i~~G---e~~~l~G~NGsGKSTLl-k~l~G~----~~p~~G----~i~~~  372 (638)
T PRK10636        326 IILDSIKLNLVPG---SRIGLLGRNGAGKSTLI-KLLAGE----LAPVSG----EIGLA  372 (638)
T ss_pred             eeeccceEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCC----eEEEC
Confidence            4689999999999   99999999999999999 888776    456666    45554

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.47  E-value=4.9e-07  Score=65.76  Aligned_cols=47  Identities=28%  Similarity=0.500  Sum_probs=39.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEEC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID   67 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~   67 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++
T Consensus       298 ~il~~is~~i~~G---e~~~l~G~NGsGKSTLl-~~l~Gl----~~p~~G----~i~~~  344 (520)
T TIGR03269       298 KAVDNVSLEVKEG---EIFGIVGTSGAGKTTLS-KIIAGV----LEPTSG----EVNVR  344 (520)
T ss_pred             eEEeeEEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEEe
Confidence            5789999999999   99999999999999999 888876    356666    55553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.46  E-value=2.7e-07  Score=74.04  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=34.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      .+++++++++.+|   .++++||++|||||||+ +++.+.+.
T Consensus      1182 ~vL~~lsl~i~~G---~~vAIVG~SGsGKSTl~-~LL~r~yd 1219 (1466)
T PTZ00265       1182 PIYKDLTFSCDSK---KTTAIVGETGSGKSTVM-SLLMRFYD 1219 (1466)
T ss_pred             ccccCeeEEEcCC---CEEEEECCCCCCHHHHH-HHHHHhCC
Confidence            5789999999999   99999999999999999 88877744

>KOG0075|consensus

Probab=98.45  E-value=2.5e-08  Score=62.21  Aligned_cols=63  Identities=24%  Similarity=0.353  Sum_probs=51.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +..+.+||-..+||||+++....+.|.+...|+.|.-.  ..+....+...+||..||.+|++|+
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm--rk~tkgnvtiklwD~gGq~rfrsmW   82 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM--RKVTKGNVTIKLWDLGGQPRFRSMW   82 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee--EEeccCceEEEEEecCCCccHHHHH
Confidence            36889999999999999988888898888888865321  2345567888999999999998875

>PLN03211 ABC transporter G-25; Provisional

Probab=98.45  E-value=6.1e-07  Score=67.27  Aligned_cols=52  Identities=19%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++.+.+|   ..++++|++|+|||||+ +.+.+..    .|.  .|    ++.+||+++
T Consensus        81 ~~iL~~vs~~i~~G---e~~aI~GpnGaGKSTLL-~iLaG~~----~~~~~sG----~I~inG~~~  134 (659)
T PLN03211         81 RTILNGVTGMASPG---EILAVLGPSGSGKSTLL-NALAGRI----QGNNFTG----TILANNRKP  134 (659)
T ss_pred             CeeeeCCEEEEECC---EEEEEECCCCCCHHHHH-HHHhCCC----CCCceeE----EEEECCEEC
Confidence            55899999999999   99999999999999999 7777763    332  45    778888654

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=98.45  E-value=6.9e-07  Score=66.75  Aligned_cols=51  Identities=22%  Similarity=0.375  Sum_probs=43.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|+|||||+ +.+.+.    ++|+.|    ++.++|+++
T Consensus        22 ~il~~vs~~i~~G---e~~~l~G~nGsGKSTLl-~~i~Gl----~~~~~G----~i~~~g~~i   72 (648)
T PRK10535         22 EVLKGISLDIYAG---EMVAIVGASGSGKSTLM-NILGCL----DKPTSG----TYRVAGQDV   72 (648)
T ss_pred             eeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEc
Confidence            4789999999999   99999999999999999 778776    456777    677777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		1e-25
2bmj_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		7e-15
2iwr_A	178	Gtpase Like Domain Of Centaurin Gamma 1 (Human) Len		8e-15

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 60/63 (95%)
Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP 82
          P+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+DG S+LLLIRDEG PP
Sbjct: 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPP 78
Query: 83 ELQ 85
          ELQ
Sbjct: 79 ELQ 81

>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 49/64 (76%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
          R +P+LRLG++G   SGKS+L+HRF+TG++   E  E  ++KKE+++DG +HL+LIR+E 
Sbjct: 3  RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 62
Query: 80 VPPE 83
            P+
Sbjct: 63 GAPD 66

>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human) Length = 178

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 49/64 (76%)
Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
          R +P+LRLG++G   SGKS+L+HRF+TG++   E  E  ++KKE+++DG +HL+LIR+E 
Sbjct: 3  RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 62
Query: 80 VPPE 83
            P+
Sbjct: 63 GAPD 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	4e-27
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	5e-21
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-08
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	9e-08
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-07
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	6e-07
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-06
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-06
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-06
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-06
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-06
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-06
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-06
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-06
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-06
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-06
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-06
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	7e-06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-05
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	9e-05
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	3e-04
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-04

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 96.5 bits (241), Expect = 4e-27
 Identities = 50/78 (64%), Positives = 63/78 (80%)

Query: 8  DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVID 67
              +S    L    P+L++GIVG+L+SGKSALVHR++TG ++QEESPEGGRFKKE+V+D
Sbjct: 4  HHHHSSGRENLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD 63

Query: 68 GHSHLLLIRDEGVPPELQ 85
          G S+LLLIRDEG PPELQ
Sbjct: 64 GQSYLLLIRDEGGPPELQ 81

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 80.8 bits (200), Expect = 5e-21
 Identities = 31/66 (46%), Positives = 50/66 (75%)

Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
          R +P+LRLG++G   SGKS+L+HRF+TG++   E  E  ++KKE+++DG +HL+LIR+E 
Sbjct: 3  RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 62

Query: 80 VPPELQ 85
            P+ +
Sbjct: 63 GAPDAK 68

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 4  SSNSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKK 62
          SS  D    +  F       +++L I G    GKSALV RF+T  F+ E  P     ++ 
Sbjct: 8  SSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH 67

Query: 63 EVVIDGHSHLLLIRD 77
          +  ID     + I D
Sbjct: 68 QATIDDEVVSMEILD 82

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 46.0 bits (110), Expect = 9e-08
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRD 77
          ++ L I+G   +GKSAL  +F+T  F+ E  P     +  E  +D     L + D
Sbjct: 21 EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMD 75

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 44.0 bits (105), Expect = 5e-07
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 11/62 (17%)

Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLI 75
          + + +L +VG+   GKSAL  + +   F+       E+S     ++K+VVIDG + LL I
Sbjct: 1  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-----YRKQVVIDGETCLLDI 55

Query: 76 RD 77
           D
Sbjct: 56 LD 57

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 43.7 bits (104), Expect = 6e-07
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRD 77
           + +L +VG+   GKSAL  + +   F+ E  P     ++K+VVIDG + LL I D
Sbjct: 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRD 77
          D R+ + G+   GKS+LV RF+ G F     P     +++ +  D     L I D
Sbjct: 8  DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITD 62

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 42.9 bits (102), Expect = 1e-06
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
          R+ + G+   GKS+LV RF+ G F +      E++     +++ +  D     L I D
Sbjct: 5  RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-----YRQVISCDKSICTLQITD 57

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 11/60 (18%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
          + +L +VG+   GKSAL  + +   F+       E+S     ++K+VVIDG + LL I D
Sbjct: 4  EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDS-----YRKQVVIDGETCLLDILD 58

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 11/58 (18%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
          +L ++GS   GKSAL  +F+ G F++      E+S     ++K+V +D    +L I D
Sbjct: 5  KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-----YRKQVEVDCQQCMLEILD 57

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 42.5 bits (101), Expect = 2e-06
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
            ++ I+G  + GKS+L  +F+ G F+       E +     F K + ++G  + L + D
Sbjct: 6  SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-----FTKLITVNGQEYHLQLVD 60

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
          ++ +VGS   GKSAL  +FM   F++       +S     ++K+VV+DG    + I D
Sbjct: 6  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-----YRKKVVLDGEEVQIDILD 58

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 42.1 bits (100), Expect = 2e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK-KEVVIDGHSHLLLIRD 77
          R+ ++G    GK++L   F            G     + + +DG    L++ D
Sbjct: 6  RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVD 58

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 29 IVGSLASGKSALVHRFMTGAFLQE-ESPEGGRFKKEVVIDGHSHLLLIRD 77
          I+G    GK++L H+F+ G F +  +      + K V +      L + D
Sbjct: 29 ILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 19 ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHL 72
          + ++P  +L +VG    GKSAL  +F    F+       E+S     + K   ID    +
Sbjct: 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDS-----YLKHTEIDNQWAI 67

Query: 73 LLIRD 77
          L + D
Sbjct: 68 LDVLD 72

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 11/58 (18%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
          ++ +VGS   GKSAL  +FM   F++       +S     ++K+VV+DG    + I D
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-----YRKKVVLDGEEVQIDILD 72

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 41.7 bits (99), Expect = 4e-06
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK-KEVVIDGHSHLLLIRD 77
          +L +VG    GKSAL  +F+   F+ +  P       K   +DG    L I D
Sbjct: 11 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILD 63

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 41.8 bits (99), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRD 77
          ++ +VGS   GKSAL  +FM   F+++  P     ++K+VV+DG    + I D
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILD 68

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 41.0 bits (97), Expect = 7e-06
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
          ++ +VG    GKS L   F           E     +++ +++D     L++ D
Sbjct: 4  KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYD 57

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 40.5 bits (96), Expect = 9e-06
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 11/58 (18%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQ------EESPEGGRFKKEVVIDGHSHLLLIRD 77
          ++ ++GS   GKSAL  +F+TG F++      E+      ++KE+ +D    +L I D
Sbjct: 5  KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-----YRKEIEVDSSPSVLEILD 57

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 40.2 bits (95), Expect = 1e-05
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRD 77
          ++ ++G+   GKSAL   F  G     E+   G  + + +V+DG    L++ D
Sbjct: 4  KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYD 55

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 38.0 bits (89), Expect = 9e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
          ++ +VG    GKS L   F          PE     +++ +++D     L++ D
Sbjct: 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYD 78

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEE--SPEGGRFK-KEVVIDGHSHLLLIRD 77
          R+ ++G    GKS L + F       +      G     + +++DG S  +++ D
Sbjct: 8  RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLD 62

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 36.5 bits (85), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 26 RLGIVGSLASGKSALVHRF--MTGAFLQEESPEGGRFK-KEVVIDGHSHLLLIRD 77
          R+ ++G    GKS L + F  +  +   +    G     + +++DG S  +++ D
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLD 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.8
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.7
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.67
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.65
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.64
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.64
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.64
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.64
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.63
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.63
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.62
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.61
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.61
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.61
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.61
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.61
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.6
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.6
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.6
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.6
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.6
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.58
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.58
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.58
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.58
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.58
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.58
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.57
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.57
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.57
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.57
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.56
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.56
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.56
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.56
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.56
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.56
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.55
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.55
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.55
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.55
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.55
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.55
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.54
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.54
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.54
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.54
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.54
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.53
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.53
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.53
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.53
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.53
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.53
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.53
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.53
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.52
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.52
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.52
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.52
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.51
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.51
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.51
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.51
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.51
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.51
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.5
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.5
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.5
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.49
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.48
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.48
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.48
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.48
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.48
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.47
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.47
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.47
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.2
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.45
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.45
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.45
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.45
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.44
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.43
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.43
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.43
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.43
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.42
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.42
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.41
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.41
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.41
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.41
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.41
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.41
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.39
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.38
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.37
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.37
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.36
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.36
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.36
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.36
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.3
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.27
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.21
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.2
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.18
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.18
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.17
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.16
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.15
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.12
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.11
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.11
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.1
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.09
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.08
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.06
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.03
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.02
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.01
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.01
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.99
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.99
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.99
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.99
1g6h_A	257	High-affinity branched-chain amino acid transport	98.99
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.98
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.98
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.98
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.96
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.95
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.95
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.94
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.94
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.93
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.92
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.91
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.91
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	98.9
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	98.9
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.9
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.89
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.88
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.88
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.87
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.86
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	98.85
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.84
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.82
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.81
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.81
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.8
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.8
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.79
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.79
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.79
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.77
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.77
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.77
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.76
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.76
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.72
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.72
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.72
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	98.71
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.7
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.68
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.68
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.68
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.67
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.65
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.65
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	98.63
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.62
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	98.59
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.59
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.58
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.58
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	98.57
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.57
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.54
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	98.54
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.49
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.47
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.46
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.45
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.44
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.42
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.42
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.4
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.4
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.4
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.39
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.39
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.39
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.39
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.37
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.35
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.35
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.34
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.33
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.33
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.33
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.29
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.28
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.28
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.28
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.28
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.27
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.27
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.26
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.26
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.24
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.22
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.21
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.2
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	98.2
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.19
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.19
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.17
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.16
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.15
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.12
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.11
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.11
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.09
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	98.07
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.07
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.07
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.05
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.03
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.02
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.02
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.0
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.99
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.97
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.96
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.96
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.95
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	97.91
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.9
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.89
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.89
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	97.88
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.88
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.87
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.87
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.86
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.86
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.86
2og2_A	359	Putative signal recognition particle receptor; nuc	97.85
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.8
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.8
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	97.79
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.78
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.78
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.75
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.74
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.74
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.7
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.69
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.67
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.66
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.66
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.65
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.64
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.63
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.63
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.62
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.61
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.59
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.57
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.56
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.55
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.54
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.53
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.51
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.49
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.49
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.47
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.47
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.46
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.45
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.44
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.43
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.42
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.42
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.41
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.41
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.4
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.37
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.37
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.36
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.35
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.35
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.32
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.29
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.28
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.25
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.25
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.25
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.24
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.23
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.23
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.23
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.22
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.21
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.2
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.2
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.2
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.19
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.19
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.16
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	97.16
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.15
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.15
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.14
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.14
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.13
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.12
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.12
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.11
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.1
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	97.1
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.1
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.09
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.08
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.08
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.08
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.07
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.06
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.04
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.04
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.02
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.02
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.02
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.02
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.01
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.01
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.01
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.01
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.01
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.0
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.0
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.97
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.97
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.96
1via_A	175	Shikimate kinase; structural genomics, transferase	96.96
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.96
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.92
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.91
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.91
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	96.9
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.89
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.89
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.89
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.88
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.88
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.88
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.88
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.87
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.87
3bos_A	242	Putative DNA replication factor; P-loop containing	96.87
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.87
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.85
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.85
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.84
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.83
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.82
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.81
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.81
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.78
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.77
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.77
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.76
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.75
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.75
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.75
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.74
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.74
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.73
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.73
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.72
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.72
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.71
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.7
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.69
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.69
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.68
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.67
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.66
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.66
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.66
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.66
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.65
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.65
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.65
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.65
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.63
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.63
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.62
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.61
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.61
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.58
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.57
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.57
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.57
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.55
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.53
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.52
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.52
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.51
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.51
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.51
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.5
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.5
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.49
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.49
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.48
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.46
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.45
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.45
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.43
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.41
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.41
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.39
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.39
2fna_A	357	Conserved hypothetical protein; structural genomic	96.38
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.37
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.36
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.36
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.33
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.33
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.32
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.31
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.31
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.29
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.27
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.26
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.26
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.26
3co5_A	143	Putative two-component system transcriptional RES	96.25
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.25
3ice_A	422	Transcription termination factor RHO; transcriptio	96.21
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.18
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.18
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.17
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.15
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.15
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.14
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.11
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.1
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.09
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.09
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.08
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.08
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.05
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.04
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.03
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.03
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	96.03
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.03
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.02

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.80  E-value=4.1e-20  Score=119.87  Aligned_cols=67  Identities=22%  Similarity=0.370  Sum_probs=52.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++||++||++|||||||+.||+.+.|.++|.||.+ +| .+.+.+++..+++++|||+|||+|..+++
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            359999999999999999999999999999999954 55 67888999999999999999999988764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.70  E-value=1.5e-16  Score=99.83  Aligned_cols=65  Identities=74%  Similarity=1.231  Sum_probs=59.0

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ...++|++++|++|||||||+.+++.+.|...+.|+.+.|.+.+.+++..+.+++|||+|+++|.
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~   81 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ   81 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh
Confidence            45569999999999999999999999999988888877788889999999999999999999864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.67  E-value=7.9e-16  Score=96.55  Aligned_cols=66  Identities=26%  Similarity=0.353  Sum_probs=54.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ...+||+++|+.|||||||+.+++.+.|...+.|+.+ .|...+.+++..+.+++|||+|+++|..+
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~   85 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC   85 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH
Confidence            4568999999999999999999999999988888844 56667888999999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.65  E-value=8.1e-16  Score=97.74  Aligned_cols=68  Identities=21%  Similarity=0.247  Sum_probs=58.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   76 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPL   76 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHh
Confidence            458999999999999999999999999888888844 56667788999999999999999999887653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.64  E-value=1.8e-15  Score=93.53  Aligned_cols=62  Identities=45%  Similarity=0.907  Sum_probs=54.1

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..++|++++|++|||||||+.+++.+.|.+ +.|+.+ .|.+.+.+++..+.+++|||+|++++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCCH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCchh
Confidence            456999999999999999999999999987 677744 46778889999999999999999873

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.64  E-value=6.1e-16  Score=99.14  Aligned_cols=69  Identities=17%  Similarity=0.258  Sum_probs=57.5

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ...+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   94 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPL   94 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGG
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHH
Confidence            3459999999999999999999999999998888854 46677788899999999999999999877653

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.64  E-value=1.9e-15  Score=93.64  Aligned_cols=67  Identities=24%  Similarity=0.366  Sum_probs=58.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ...+++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+||++|+++|..++.
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   72 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ   72 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH
Confidence            348999999999999999999999999888888844 4677788999999999999999999977654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.64  E-value=1e-15  Score=96.06  Aligned_cols=70  Identities=21%  Similarity=0.283  Sum_probs=59.8

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .....+|++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   89 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP   89 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH
Confidence            334568999999999999999999999999888888854 5666788999999999999999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.63  E-value=8.5e-16  Score=95.87  Aligned_cols=67  Identities=24%  Similarity=0.336  Sum_probs=58.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..+|++++|++|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+||++|+++|..+++
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   73 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP   73 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH
Confidence            358999999999999999999999999888888854 4566778889999999999999999877654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.63  E-value=1.7e-15  Score=93.78  Aligned_cols=67  Identities=25%  Similarity=0.346  Sum_probs=58.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..++++++|+.|||||||+.+++.+.|..++.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   71 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP   71 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH
Confidence            348999999999999999999999999888888844 4566788899999999999999999876654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=95.41  Aligned_cols=66  Identities=27%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   86 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP   86 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH
Confidence            48999999999999999999999998888888854 4667788899999999999999999987654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.61  E-value=4.8e-15  Score=90.59  Aligned_cols=68  Identities=24%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   74 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPI   74 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHH
Confidence            348999999999999999999999998887778744 45 567888999999999999999998876554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.61  E-value=1.6e-15  Score=96.84  Aligned_cols=68  Identities=24%  Similarity=0.320  Sum_probs=58.5

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ...+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   94 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP   94 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH
Confidence            3458999999999999999999999999888888854 4566778888899999999999999887654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.61  E-value=2.7e-15  Score=95.96  Aligned_cols=69  Identities=25%  Similarity=0.373  Sum_probs=43.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ...+|++++|+.|||||||+.+++.+.|...+.|+.. .+...+.+++..+.+.+|||+|+++|..+++.
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~  101 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPL  101 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC------------
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHH
Confidence            3458999999999999999999999998888888844 46677889999999999999999999877654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.61  E-value=4.1e-15  Score=90.55  Aligned_cols=66  Identities=27%  Similarity=0.440  Sum_probs=56.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ .+.+.+.+++..+.+.+||++|++++..++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   68 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMR   68 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence            348999999999999999999999999888888854 456677888889999999999999887543

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.61  E-value=3.1e-15  Score=93.80  Aligned_cols=67  Identities=25%  Similarity=0.354  Sum_probs=58.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..++++++|+.|||||||+.+++.+.|...+.|+. ..+...+.+++..+.+.+||++|+++|..++.
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~   84 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP   84 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH
Confidence            34899999999999999999999999988888884 45666788899999999999999999987654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.60  E-value=1.3e-14  Score=89.36  Aligned_cols=66  Identities=27%  Similarity=0.337  Sum_probs=57.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...+++++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..++
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~   74 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR   74 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence            458999999999999999999999999888888844 456778889999999999999999987654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.60  E-value=1.4e-14  Score=87.91  Aligned_cols=64  Identities=28%  Similarity=0.470  Sum_probs=55.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+||++|++++..+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   67 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM   67 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence            48999999999999999999999999888888854 45677889999999999999999987543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.60  E-value=1.1e-14  Score=90.32  Aligned_cols=68  Identities=26%  Similarity=0.393  Sum_probs=59.1

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ....+|++++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+||++|++++..++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~   83 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR   83 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHH
Confidence            34569999999999999999999999999888888844 567778899999999999999999987654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.60  E-value=1.1e-14  Score=90.35  Aligned_cols=66  Identities=33%  Similarity=0.481  Sum_probs=54.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+++++++|+.|||||||+.+++.+.+...+.++.. .+...+.+++..+.+.+|||+|++++..++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   69 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR   69 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHH
Confidence            358999999999999999999999999888888754 456778899999999999999999987664

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.60  E-value=8.6e-15  Score=91.35  Aligned_cols=71  Identities=31%  Similarity=0.458  Sum_probs=51.8

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +++..++|+++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..++..
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   88 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQ   88 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC----------
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHH
Confidence            345568999999999999999999999998888877744 45667888999999999999999988776543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.58  E-value=4.3e-15  Score=94.37  Aligned_cols=68  Identities=25%  Similarity=0.314  Sum_probs=56.5

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ...+|++++|+.|||||||+.+++.+.+..++.++.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   96 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP   96 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            3459999999999999999999999999888888854 4567788899999999999999999987654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.58  E-value=1.8e-14  Score=90.76  Aligned_cols=65  Identities=23%  Similarity=0.359  Sum_probs=56.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|++|||||||+.+++...+...+.|+.+ ++ ...+.++|+.+.+++||++|++++..+.
T Consensus        29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~   95 (191)
T 1oix_A           29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAIT   95 (191)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhh
Confidence            47999999999999999999999998888888844 45 6788999999999999999999987664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.58  E-value=1.4e-14  Score=91.51  Aligned_cols=65  Identities=23%  Similarity=0.364  Sum_probs=53.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|++|||||||+.++++..|...+.|+.+ .+ ...+.++|..+.+.+||++|++++..++
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~   71 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRIT   71 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence            38999999999999999999999988877778743 44 6788999999999999999999887654

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.58  E-value=1.2e-14  Score=92.38  Aligned_cols=66  Identities=23%  Similarity=0.340  Sum_probs=51.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..||+++|+.|||||||+.+++.+.+...+.|+. ..+...+.+++..+.+.+|||+|++++..++.
T Consensus        25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   91 (207)
T 2fv8_A           25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP   91 (207)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG
T ss_pred             CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence            4899999999999999999999999988888874 45555678899999999999999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.58  E-value=1.8e-14  Score=87.70  Aligned_cols=65  Identities=22%  Similarity=0.458  Sum_probs=56.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ ++ ...+.+++..+.+.+||++|++++..+.
T Consensus         5 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   71 (168)
T 1z2a_A            5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT   71 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH
Confidence            48999999999999999999999999888888743 44 6778889999999999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.58  E-value=7.4e-15  Score=92.91  Aligned_cols=67  Identities=24%  Similarity=0.324  Sum_probs=58.0

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..+|++++|+.|||||||+.+++.+.+...+.|+. ..+...+.+++..+.+.+||++|+++|..++.
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   91 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP   91 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH
Confidence            35899999999999999999999999988888884 35656678899999999999999999877654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.57  E-value=3e-14  Score=86.51  Aligned_cols=64  Identities=30%  Similarity=0.422  Sum_probs=52.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~   68 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI   68 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHH
Confidence            48999999999999999999999998888888744 45667788999999999999999987543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.57  E-value=9e-15  Score=92.42  Aligned_cols=67  Identities=22%  Similarity=0.286  Sum_probs=54.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+|||+|++++..++.
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   90 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY   90 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH
Confidence            459999999999999999999999999988888844 4566677778889999999999999987654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.57  E-value=8.8e-16  Score=94.96  Aligned_cols=66  Identities=23%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+++|||+|+++|..++.
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   74 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP   74 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH
Confidence            48999999999999999999999999888888843 3444556778889999999999999987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.57  E-value=1.9e-14  Score=90.96  Aligned_cols=66  Identities=26%  Similarity=0.371  Sum_probs=57.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++|+++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+|||+|+++|..++.
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   75 (206)
T 2bcg_Y            8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS   75 (206)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence            48999999999999999999999999888878743 45 56788999999999999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.56  E-value=1.8e-14  Score=87.79  Aligned_cols=64  Identities=28%  Similarity=0.488  Sum_probs=55.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   68 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL   68 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhh
Confidence            48999999999999999999999998887878744 44 567788999999999999999987654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.56  E-value=5.2e-14  Score=85.83  Aligned_cols=63  Identities=27%  Similarity=0.420  Sum_probs=54.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+...+..++..+.+.+|||+|++++..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~   66 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA   66 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHH
Confidence            48999999999999999999999998877878743 4566677888899999999999998754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.5e-14  Score=91.80  Aligned_cols=66  Identities=21%  Similarity=0.347  Sum_probs=53.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++|+++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|+++|..++.
T Consensus        13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B           13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            48999999999999999999999999887777743 45 56788899999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.56  E-value=5.2e-14  Score=85.16  Aligned_cols=64  Identities=34%  Similarity=0.490  Sum_probs=55.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   67 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM   67 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHH
Confidence            48999999999999999999999998888877744 45667888999999999999999987643

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.56  E-value=1.4e-14  Score=89.17  Aligned_cols=66  Identities=24%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECC-eEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDG-HSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g-~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+.|..++.|+.+ + +...+.+++ ..+.+.+||++|++++..++
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~   73 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKML   73 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchh
Confidence            458999999999999999999999988877777743 3 467788887 68999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.56  E-value=2.5e-14  Score=89.67  Aligned_cols=67  Identities=25%  Similarity=0.298  Sum_probs=53.8

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...+|++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|+++|..++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   87 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSIT   87 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhH
Confidence            4468999999999999999999999998877777733 44 5678889999999999999999987764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.55  E-value=5.2e-15  Score=91.76  Aligned_cols=67  Identities=22%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .++++++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+.+++..+.+.+||++|+++|..++..
T Consensus         8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   76 (183)
T 2fu5_C            8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA   76 (183)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHH
Confidence            48999999999999999999999888777777743 45 567888999999999999999999876554

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=5.1e-14  Score=88.53  Aligned_cols=62  Identities=31%  Similarity=0.460  Sum_probs=54.3

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ...+|++++|+.|||||||+.+++.+.|...+.|+.+ .+...+.+++..+.+.+||++|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   88 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED   88 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence            3459999999999999999999999999888888854 4666788899999999999999987

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.55  E-value=6e-14  Score=88.26  Aligned_cols=65  Identities=29%  Similarity=0.417  Sum_probs=56.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..++|+++|+.|||||||+.+++.+.+...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus        13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   78 (206)
T 2bov_A           13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI   78 (206)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHH
Confidence            458999999999999999999999999888888854 45667888999999999999999987543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.55  E-value=6.3e-14  Score=86.60  Aligned_cols=66  Identities=29%  Similarity=0.420  Sum_probs=56.1

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ...+||+++|+.|||||||+.+++.+.|...+.++.+ .+...+.+++..+.+.+||++|++++..+
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   82 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI   82 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHH
Confidence            3458999999999999999999999999888888744 45667788999999999999999987543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=5.4e-14  Score=86.69  Aligned_cols=68  Identities=26%  Similarity=0.387  Sum_probs=49.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..++++++|+.|||||||+.+++.+.+.. .+.|+.+ .+ ...+.+++..+.+.+||++|++++..++..
T Consensus         9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~   79 (180)
T 2g6b_A            9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA   79 (180)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------C
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH
Confidence            34899999999999999999999988853 5667633 45 456688999999999999999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.55  E-value=6.9e-15  Score=93.67  Aligned_cols=64  Identities=28%  Similarity=0.430  Sum_probs=55.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .+|++++|+.|||||||+.+++.+.|...+.++.+ ++ .+.+.+++..+.+.+|||+|+++|..+
T Consensus        26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~   91 (201)
T 2ew1_A           26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI   91 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence            48999999999999999999999999888878744 45 677889999999999999999988643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.54  E-value=5.1e-14  Score=87.99  Aligned_cols=67  Identities=19%  Similarity=0.254  Sum_probs=57.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..++++++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+||++|++++..++.
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   89 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITT   89 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGG
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHH
Confidence            348999999999999999999999998887777744 45 56778888999999999999999877653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.54  E-value=3.6e-14  Score=87.26  Aligned_cols=65  Identities=25%  Similarity=0.381  Sum_probs=52.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   72 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSL   72 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence            348999999999999999999999998888878744 44 677888999999999999999887544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.54  E-value=4.6e-14  Score=88.35  Aligned_cols=65  Identities=26%  Similarity=0.371  Sum_probs=55.7

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ...++|+++|+.|||||||+.+++.+.+...+.|+.+ .+...+.+++..+.+.+|||+|++++..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   71 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPA   71 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHH
Confidence            3458999999999999999999999999888888844 4566677899999999999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.54  E-value=2.5e-14  Score=87.29  Aligned_cols=65  Identities=26%  Similarity=0.337  Sum_probs=51.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~   69 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTIT   69 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhH
Confidence            48999999999999999999999998877777743 44 5677888889999999999999987654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.54  E-value=2.2e-14  Score=87.42  Aligned_cols=66  Identities=20%  Similarity=0.170  Sum_probs=40.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+|++++|++|||||||+++++...+.. ..++. ..+...+.+++..+.+.+||++|++++..++..
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   68 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGH   68 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhh
Confidence            3899999999999999998887655433 33443 345667889999999999999999999876654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.53  E-value=3.5e-14  Score=87.24  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=56.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ ++ ...+.+++..+.+.+|||+|++++..+.
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~   80 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   80 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGS
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHH
Confidence            458999999999999999999999998888877744 44 6778889999999999999999886553

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.53  E-value=4.4e-14  Score=86.02  Aligned_cols=64  Identities=28%  Similarity=0.423  Sum_probs=55.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~   71 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL   71 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhh
Confidence            48999999999999999999999998887777744 44 567788999999999999999987654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.53  E-value=3.2e-14  Score=87.58  Aligned_cols=66  Identities=27%  Similarity=0.348  Sum_probs=54.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++.
T Consensus         9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   76 (181)
T 3tw8_B            9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS   76 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH
Confidence            48999999999999999999999988877777743 44 57788899999999999999999877654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.53  E-value=1.1e-13  Score=86.59  Aligned_cols=66  Identities=18%  Similarity=0.290  Sum_probs=56.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+||+++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   91 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT   91 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence            348999999999999999999999998887777744 45 5677888899999999999999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.53  E-value=4.7e-14  Score=86.03  Aligned_cols=65  Identities=26%  Similarity=0.439  Sum_probs=56.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~   72 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALA   72 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGT
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhccc
Confidence            48999999999999999999999998888888854 44 5677889999999999999999886654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.53  E-value=4e-14  Score=89.26  Aligned_cols=67  Identities=24%  Similarity=0.350  Sum_probs=57.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+||++|++++..++.
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   75 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV   75 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH
Confidence            458999999999999999999999998888888743 34 56778888899999999999999887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.53  E-value=6.6e-14  Score=87.28  Aligned_cols=65  Identities=29%  Similarity=0.430  Sum_probs=56.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   81 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT   81 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhh
Confidence            48999999999999999999999999888888744 44 5678889999999999999999887653

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.53  E-value=5.7e-14  Score=86.66  Aligned_cols=67  Identities=21%  Similarity=0.363  Sum_probs=56.6

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...+|++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   78 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLA   78 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGT
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhh
Confidence            3458999999999999999999999998887777743 44 5678889999999999999999887654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.52  E-value=4e-14  Score=88.46  Aligned_cols=64  Identities=23%  Similarity=0.399  Sum_probs=54.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ...+||+++|+.|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+|||+|++++.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   83 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR   83 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence            3458999999999999999999999999887777743 44 5678889999999999999998875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.52  E-value=9.7e-14  Score=86.68  Aligned_cols=66  Identities=23%  Similarity=0.342  Sum_probs=56.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   82 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTIT   82 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTH
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence            348999999999999999999999999888877743 44 5778899999999999999999887653

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.52  E-value=4.4e-14  Score=88.84  Aligned_cols=74  Identities=16%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +++++.++..    ...|++++|++|||||||+.+++.+.+. .+.|+.+.....+.+++  +.+.+|||+|+++++.++
T Consensus        12 ~~l~~~~~~~----~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~   84 (190)
T 1m2o_B           12 DVLASLGLWN----KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEELAIGN--IKFTTFDLGGHIQARRLW   84 (190)
T ss_dssp             ----------------CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEEEETT--EEEEEEECCCSGGGTTSG
T ss_pred             HHHHHhhccC----CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEEEEECC--EEEEEEECCCCHHHHHHH
Confidence            3445555432    2379999999999999999999998875 46677554556777887  788999999999987765


Q ss_pred             C
Q psy6968          89 P   89 (93)
Q Consensus        89 ~   89 (93)
                      +
T Consensus        85 ~   85 (190)
T 1m2o_B           85 K   85 (190)
T ss_dssp             G
T ss_pred             H
Confidence            3

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.52  E-value=3.5e-14  Score=87.44  Aligned_cols=68  Identities=25%  Similarity=0.400  Sum_probs=45.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEEC-CeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVID-GHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~-g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ ++ ...+.++ +..+.+.+||++|++++..++..
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   77 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA   77 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------C
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHH
Confidence            358999999999999999999999998888877743 33 5667777 56789999999999998876543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.51  E-value=4.1e-14  Score=89.66  Aligned_cols=64  Identities=31%  Similarity=0.462  Sum_probs=49.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .+||+++|+.|||||||+.+++.+.|...+.|+.+ ++ ...+.+++..+.+.+||++|+++|..+
T Consensus        29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~   94 (201)
T 2hup_A           29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI   94 (201)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence            48999999999999999999999999888888843 45 677889999999999999999987543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.51  E-value=1e-13  Score=86.43  Aligned_cols=65  Identities=18%  Similarity=0.240  Sum_probs=53.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeE------------------------------
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHS------------------------------   70 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~------------------------------   70 (93)
                      ..++|+++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            348999999999999999999999999888888844 44 5667777765                              


Q ss_pred             -------EEEEEEecCCCCCCCCC
Q psy6968          71 -------HLLLIRDEGVPPELQPP   87 (93)
Q Consensus        71 -------i~~~i~d~~g~~~~~~~   87 (93)
                             +.+.+|||+|++++..+
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~  109 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASI  109 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTT
T ss_pred             ccCccceeEEEEEECCCcHHHHHH
Confidence                   89999999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.51  E-value=9.6e-14  Score=87.53  Aligned_cols=64  Identities=23%  Similarity=0.423  Sum_probs=48.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ..++|+++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+||++|+++|..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~   92 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRS   92 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhh
Confidence            348999999999999999999999998877777744 44 56788999999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.51  E-value=1.3e-13  Score=84.72  Aligned_cols=65  Identities=23%  Similarity=0.387  Sum_probs=55.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++++..+
T Consensus        14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   80 (179)
T 1z0f_A           14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV   80 (179)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhh
Confidence            348999999999999999999999998888877743 44 567788999999999999999987643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.51  E-value=4.9e-14  Score=88.45  Aligned_cols=66  Identities=29%  Similarity=0.441  Sum_probs=56.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+||+++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   89 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLA   89 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGT
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhh
Confidence            458999999999999999999999998877888854 44 5667788889999999999999887654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.51  E-value=1e-13  Score=87.66  Aligned_cols=65  Identities=25%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++|+++|+.|||||||+.+++.+.|...+.|+.+ .+ ...+.+++..+.+.+|||+|++++..++
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   86 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT   86 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence            38999999999999999999999998877777743 44 5678889999999999999999887654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.50  E-value=1e-13  Score=84.67  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=42.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +|++++|++|||||||+.+++...+...+.++  ...+...+.+++..+.+.+||++|++++..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   66 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG   66 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----
T ss_pred             EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccch
Confidence            79999999999999999999877765554443  334567788999999999999999999865

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=84.44  Aligned_cols=62  Identities=19%  Similarity=0.305  Sum_probs=43.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..+|++++|++|||||||+.+++.+.+...+.+.... +.+.+.+++..+.+.+||++|++++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   65 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL   65 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-----
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCcc
Confidence            3489999999999999999999988876655443333 4677889999999999999999884

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.50  E-value=1e-13  Score=85.90  Aligned_cols=64  Identities=23%  Similarity=0.411  Sum_probs=55.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..+
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   75 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV   75 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence            48999999999999999999999998887777744 44 567888999999999999999987543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.49  E-value=2.7e-14  Score=90.39  Aligned_cols=63  Identities=19%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..|++++|++|||||||+.+++.+.+. .+.||.+.....+.+++  +.+.+|||+|+++++.+++
T Consensus        25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~   87 (198)
T 1f6b_A           25 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTIAG--MTFTTFDLGGHIQARRVWK   87 (198)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETT--EEEEEEEECC----CCGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeEEEEECC--EEEEEEECCCcHhhHHHHH
Confidence            379999999999999999999888775 46677443334677887  7889999999999987654

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.48  E-value=2.2e-13  Score=85.81  Aligned_cols=64  Identities=19%  Similarity=0.276  Sum_probs=55.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .+|++++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+|||+|++++..+
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   73 (203)
T 1zbd_A            8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTI   73 (203)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcch
Confidence            38999999999999999999999998888778754 45 567788999999999999999887643

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.48  E-value=7.5e-14  Score=88.24  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ...+|++++|++|||||||+.+++...+...+.|+  .+.+.+.+.+++..+.+.+||++|++++.
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~   86 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG   86 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch
Confidence            34589999999999999999998654333223343  33456778899999999999999998864

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.48  E-value=7.3e-15  Score=91.80  Aligned_cols=65  Identities=25%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC--CCCCCCCCCcc-ee-EEEEEE---CCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG-RF-KKEVVI---DGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~--~f~~~~~~t~~-~~-~~~~~~---~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|++++|++|||||||+++++..  .|...+.||.+ ++ ...+.+   ++..+.+.+|||+|+++|..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   73 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH   73 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh
Confidence            379999999999999999998874  56666777744 34 333333   3467899999999999887654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.48  E-value=2e-13  Score=86.12  Aligned_cols=65  Identities=18%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh--CCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCC-CCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT--GAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPE-LQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~--~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~-~~~~   87 (93)
                      ..+|+++||++|||||||+++|+.  ..|...+.++.. .+.+.+.+++..+.+.+|||+|++. +..+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~   73 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWL   73 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTT
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhH
Confidence            348999999999999999999985  445555555433 3567888999999999999999887 4433

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=86.80  Aligned_cols=67  Identities=27%  Similarity=0.353  Sum_probs=49.6

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +....++|+++|+.|||||||+.+++.+.+...+.++.+ ++ ...+.+++..+.+.+|||+|++++..
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   90 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS   90 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHH
Confidence            334568999999999999999999999988877777744 44 57788899999999999999988754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.47  E-value=1.7e-13  Score=91.81  Aligned_cols=65  Identities=26%  Similarity=0.348  Sum_probs=57.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ++++++|+.|||||||+.+++.+.|..++.++.+ .+...+.+++..+.+.+|||+|+++|..++.
T Consensus       156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~  221 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP  221 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG
T ss_pred             eEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH
Confidence            8999999999999999999999999888888854 4566788899999999999999999876654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.47  E-value=5e-14  Score=89.09  Aligned_cols=66  Identities=26%  Similarity=0.425  Sum_probs=47.1

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+||+++|+.|||||||+.+++.+.+...+.|+.+ .+ ...+.+++..+.+.+||++|++++..++
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~   91 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT   91 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH
Confidence            348999999999999999999999988877777743 44 5678889999999999999998886654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.47  E-value=5.9e-14  Score=89.20  Aligned_cols=63  Identities=19%  Similarity=0.199  Sum_probs=50.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe-EEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH-SHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~-~i~~~i~d~~g~~~~~~   86 (93)
                      ...|++++|+.|||||||+.+++.+.|...+.++...+. .+.+++. .+.+.+|||+|+++|..
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~   69 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSA-IYKVNNNRGNSLTLIDLPGHESLRF   69 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEE-EEECSSTTCCEEEEEECCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeE-EEEecCCCccEEEEEECCCChhHHH
Confidence            348999999999999999999999999888876644332 3667754 68899999999988754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.20  E-value=4.3e-15  Score=93.99  Aligned_cols=68  Identities=25%  Similarity=0.330  Sum_probs=57.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..++++++|+.|||||||+.+++.+.|..++.++.+ .+...+.+++..+.+.+|||+|+++|..++..
T Consensus        29 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~   97 (204)
T 3th5_A           29 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL   97 (204)
Confidence            348999999999999999999999988888878744 45566778888899999999999998876543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.45  E-value=1.6e-13  Score=85.85  Aligned_cols=68  Identities=12%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQ-EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +.....+|+++|+.|||||||+.+++.+.|.. .+.||.+.....+.  +..+.+.+|||+|+++|..++.
T Consensus        13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~   81 (199)
T 4bas_A           13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE--KGRVAFTVFDMGGAKKFRGLWE   81 (199)
T ss_dssp             ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEE--ETTEEEEEEEECCSGGGGGGGG
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEE--eCCEEEEEEECCCCHhHHHHHH
Confidence            34456899999999999999999999999988 78888663333333  4457899999999999876654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.45  E-value=5.2e-14  Score=90.04  Aligned_cols=68  Identities=18%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ...+|++++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+|||+|+++|..++.
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   82 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD   82 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH
Confidence            4458999999999999999999888888877778754 33 56778889999999999999999887653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.45  E-value=6.8e-14  Score=87.45  Aligned_cols=65  Identities=12%  Similarity=0.065  Sum_probs=52.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGA-FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..++|+++|+.|||||||+.+++.+. +..++.++.+.....+.+++  +.+.+|||+|++++..++.
T Consensus        20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~   85 (190)
T 2h57_A           20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS--LSFTVFDMSGQGRYRNLWE   85 (190)
T ss_dssp             -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSS--CEEEEEEECCSTTTGGGGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECC--EEEEEEECCCCHHHHHHHH
Confidence            34899999999999999999998877 67777788665556677776  6889999999999876543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.45  E-value=1.5e-13  Score=85.63  Aligned_cols=63  Identities=25%  Similarity=0.368  Sum_probs=47.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+.+. .+.||.+.....+.+++  +.+.+|||+|++++..++
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~   77 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVINN--TRFLMWDIGGQESLRSSW   77 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEETT--EEEEEEECCC----CGGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEECC--EEEEEEECCCCHhHHHHH
Confidence            3499999999999999999999988887 56777553344566766  788999999999987654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.44  E-value=8.1e-13  Score=85.10  Aligned_cols=61  Identities=20%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh--CCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT--GAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~--~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ..+||++||++|||||||++||+.  ..|...+.++.. .+.+.+.+++..+.+.+|||+|+++
T Consensus        36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~   99 (211)
T 2g3y_A           36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG   99 (211)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcc
Confidence            458999999999999999999985  345555555533 3577888999999999999999886

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.43  E-value=9.4e-13  Score=80.86  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=44.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ..+++++|++|||||||+++++...+.....|+  .......+.+++  ..+.+|||+|+++|.
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~   64 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLT   64 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCC
Confidence            489999999999999999999987665443343  222345566766  578999999999885

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.43  E-value=3e-13  Score=82.60  Aligned_cols=62  Identities=21%  Similarity=0.301  Sum_probs=50.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .++++++|+.|||||||+.+++.+.+.. +.|+.+.....+.+++  +.+.+|||+|++++..++
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~   68 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETVTYKN--LKFQVWDLGGLTSIRPYW   68 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEEEETT--EEEEEEEECCCGGGGGGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccceEEEEECC--EEEEEEECCCChhhhHHH
Confidence            3899999999999999999999988754 5677554445666764  688999999999887654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.43  E-value=7.2e-14  Score=87.06  Aligned_cols=66  Identities=9%  Similarity=0.077  Sum_probs=50.4

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----------Ccc-ee-EEEE-EECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP-----------EGG-RF-KKEV-VIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-----------t~~-~~-~~~~-~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ...+|++++|++|||||||+ +++.+.|...+.+           +.+ ++ ...+ .+++..+.+.+|||+|+++|..+
T Consensus        12 ~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            34589999999999999999 8888888777543           322 22 2223 56778899999999999998754


Q ss_pred             C
Q psy6968          88 N   88 (93)
Q Consensus        88 ~   88 (93)
                      +
T Consensus        91 ~   91 (198)
T 3t1o_A           91 R   91 (198)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.43  E-value=4e-14  Score=89.31  Aligned_cols=67  Identities=24%  Similarity=0.365  Sum_probs=56.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+||+++|+.|||||||+++++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++++..++..
T Consensus        33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~  101 (199)
T 3l0i_B           33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSS  101 (199)
T ss_dssp             EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHH
Confidence            48999999999999999999998888777666632 34 577888999999999999999999877654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.43  E-value=7e-13  Score=82.22  Aligned_cols=64  Identities=17%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee--EEEEEECCe---------EEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF--KKEVVIDGH---------SHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~--~~~~~~~g~---------~i~~~i~d~~g~~~~~~   86 (93)
                      ..++++++|+.|||||||+.+++.+.+...+.|+.+ .+  .+.+.+++.         .+.+.+||++|++++..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            348999999999999999999999998887778744 44  356666766         78999999999988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.42  E-value=4.9e-13  Score=83.36  Aligned_cols=65  Identities=17%  Similarity=0.235  Sum_probs=51.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..++++++|+.|||||||+.+++.+.+.. +.||.+.....+.+++  +.+.+|||+|++++..++..
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~   85 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETLQYKN--ISFEVWDLGGQTGVRPYWRC   85 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEEEETT--EEEEEEEECCSSSSCCCCSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEEEECC--EEEEEEECCCCHhHHHHHHH
Confidence            44999999999999999999998888764 5677553344566664  68899999999999877654

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.42  E-value=3.1e-13  Score=83.99  Aligned_cols=63  Identities=27%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+. ...+.||.+.....+.+++  +.+.+|||+|++++..++
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~   79 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSLRSYW   79 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEETT--EEEEEEEECCSHHHHTTG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEECC--EEEEEEECCCCHhHHHHH
Confidence            34999999999999999999999887 6667788664445666765  678999999998876554

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.41  E-value=1.8e-13  Score=84.68  Aligned_cols=64  Identities=22%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..++++++|++|||||||+.+++.+.+ ..+.|+.+.....+.+++  +.+.+||++|++++..++.
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~   80 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSYKN--LKLNVWDLGGQTSIRPYWR   80 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEETT--EEEEEEEEC----CCTTGG
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEECC--EEEEEEECCCCHhHHHHHH
Confidence            449999999999999999999988877 456677553345666765  7889999999999877654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.41  E-value=8.2e-13  Score=81.20  Aligned_cols=64  Identities=13%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ..+++++|+.|||||||+.+++.+.+...+.++. ..+ ...+.+++..  +.+|||+|+++|..++.
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~   73 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRA   73 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHH
Confidence            3899999999999999999999988877665542 222 3466777754  56999999999987764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.41  E-value=1.2e-13  Score=85.79  Aligned_cols=64  Identities=25%  Similarity=0.340  Sum_probs=50.3

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...++++++|+.|||||||+.+++.+.| ..+.|+.+.....+.+++  +.+.+||++|++++..++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~   82 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVINN--TRFLMWDIGGQESLRSSW   82 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEETT--EEEEEEEESSSGGGTCGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEECC--EEEEEEECCCCHhHHHHH
Confidence            3458999999999999999999999888 456677553334566766  788999999999987654

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.41  E-value=2.2e-14  Score=90.30  Aligned_cols=64  Identities=25%  Similarity=0.350  Sum_probs=28.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC--CCCCCCCCCcc-ee-EEEEEECCe--EEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG--AFLQEESPEGG-RF-KKEVVIDGH--SHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~--~f~~~~~~t~~-~~-~~~~~~~g~--~i~~~i~d~~g~~~~~~~   87 (93)
                      .++|+++|+.|||||||+.+++.+  .|..++.|+.+ ++ ...+.+++.  .+.+.+|||+|++++..+
T Consensus        20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~   89 (208)
T 2yc2_C           20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ   89 (208)
T ss_dssp             EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH
Confidence            489999999999999999999998  88877888854 44 567888887  899999999999876544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.41  E-value=5.6e-13  Score=83.32  Aligned_cols=63  Identities=22%  Similarity=0.366  Sum_probs=49.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..++|+++|+.|||||||+.+++.+.|...+.|+.+.....+..+  .+.+.+||++|+++|..+
T Consensus        21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~   83 (188)
T 1zd9_A           21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG--NVTIKLWDIGGQPRFRSM   83 (188)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEET--TEEEEEEEECCSHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeC--CEEEEEEECCCCHhHHHH
Confidence            458999999999999999999999999887888855322233333  478899999999887654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.41  E-value=1.4e-13  Score=94.33  Aligned_cols=56  Identities=9%  Similarity=0.016  Sum_probs=42.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQE---ESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~---~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      |++++|++|||||||+.++..+.++.+   +.||.+ ++.   .++ ..+++++|||+|||+|.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~---~v~-~~v~LqIWDTAGQErf~   60 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE---HFS-TLIDLAVMELPGQLNYF   60 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE---EEC-SSSCEEEEECCSCSSSC
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE---EEc-cEEEEEEEECCCchhcc
Confidence            789999999999999987776655432   456644 332   233 45899999999999995

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.39  E-value=2.2e-13  Score=86.72  Aligned_cols=63  Identities=21%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCe----------EEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGH----------SHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~----------~i~~~i~d~~g~~~~~~   86 (93)
                      .+||+++|+.|||||||+.+++.+.|...+.++.+ ++ ...+.+++.          .+.+.+|||+|+++|..
T Consensus        25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~   99 (217)
T 2f7s_A           25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS   99 (217)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence            48999999999999999999999988777777743 44 456777766          78999999999887643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.38  E-value=8.8e-13  Score=82.95  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..++++++|+.|||||||+.+++.+.|.+ +.||.+.....+..++  +.+.+|||+|++++..++
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~   90 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYKN--ICFTVWDVGGQDKIRPLW   90 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEEEEEETT--EEEEEEECC-----CTTH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEEEEEECC--EEEEEEECCCCHhHHHHH
Confidence            44999999999999999999999888764 4566553344555544  788999999999987653

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=2.9e-12  Score=79.58  Aligned_cols=61  Identities=15%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ...+++++|++|||||||+.+++...+.....|+  .......+.+++  ..+.+|||+|++++.
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~   68 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLT   68 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccc
Confidence            3489999999999999999999886654443444  222345666766  678899999999885

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.37  E-value=1.1e-13  Score=86.68  Aligned_cols=63  Identities=22%  Similarity=0.297  Sum_probs=53.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      .+||+++|+.|||||||+.+++.+.|...+.++.+ .+ ...+.+++..+.+.+||++|++++..
T Consensus        23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   87 (191)
T 3dz8_A           23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRT   87 (191)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHH
Confidence            38999999999999999999999998887777743 34 56778888889999999999887754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.36  E-value=1.2e-12  Score=79.48  Aligned_cols=59  Identities=22%  Similarity=0.344  Sum_probs=46.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +|++++|+.|||||||+.+++.+.|.. +.||.+.....+..+  .+.+.+||++|++++..
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~   59 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETVEYK--NISFTVWDVGGQDKIRP   59 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEEEECS--SCEEEEEECCCCGGGHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEEEEEC--CEEEEEEEcCCChhhHH
Confidence            489999999999999999999988865 567755333444443  47889999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.36  E-value=6.6e-13  Score=82.76  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=48.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ...+++++|++|||||||+.+++.+.+ ..+.|+.+.....+.+++  +.+.+|||+|+++++.
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~~~~~~--~~l~i~Dt~G~~~~~~   75 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKSVQSQG--FKLNVWDIGGQRKIRP   75 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEEEEETT--EEEEEEECSSCGGGHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEEEEECC--EEEEEEECCCCHHHHH
Confidence            348999999999999999998887755 345677664455677774  6889999999998754

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.36  E-value=6.2e-13  Score=84.63  Aligned_cols=67  Identities=13%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEE-CCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVI-DGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~-~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...+||+++|+.|||||||+++++.+.+...+.++.+ .+ ...+.. ++..+.+.+|||+|++++..++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   78 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK   78 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH
Confidence            3458999999999999999999998888877777744 33 333333 3455899999999999987654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.36  E-value=3.5e-13  Score=84.87  Aligned_cols=69  Identities=16%  Similarity=0.017  Sum_probs=44.6

Q ss_pred             CCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeE--EEEEEC-CeEEEEEEEecCCCCCCCCCC
Q psy6968          19 ARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFK--KEVVID-GHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        19 ~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~--~~~~~~-g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+...+|++++|+.|||||||+. ++.+.|........+...  ....++ +..+.+++||++|+++|..+.
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~   86 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQK-VVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT   86 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHH-HHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT
T ss_pred             cccCcceEEEEECCCCCCHHHHHH-HHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhh
Confidence            344556999999999999999996 555555543221111111  122343 677899999999999997665

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.30  E-value=2e-11  Score=75.57  Aligned_cols=58  Identities=22%  Similarity=0.296  Sum_probs=44.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|++|||||||+++++...+.  ..+.++ .+.+...+.+++..  +.+|||+|++++
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~   65 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREA   65 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccc
Confidence            89999999999999999999876542  333333 33346678888854  689999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.27  E-value=6e-12  Score=84.89  Aligned_cols=60  Identities=20%  Similarity=0.169  Sum_probs=45.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC--CCCC-CCCCCcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG--AFLQ-EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~--~f~~-~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..|++++|++|||||||+.+++.+  .+.. .+.+|.+.....+.+++ .+.+.+||++|+++|
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~   65 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVF   65 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHH
Confidence            489999999999999999998887  3332 35566543222455555 588999999999987

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.21  E-value=1.5e-12  Score=85.63  Aligned_cols=70  Identities=19%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             CCeeeEEEECCC---------CCCHHHHHHHHHh---CCCCCCCCCCc-c-ee-EEE--------------EEECCeEEE
Q psy6968          22 VPDLRLGIVGSL---------ASGKSALVHRFMT---GAFLQEESPEG-G-RF-KKE--------------VVIDGHSHL   72 (93)
Q Consensus        22 ~~~~kv~lvG~~---------g~GKtsl~~r~~~---~~f~~~~~~t~-~-~~-~~~--------------~~~~g~~i~   72 (93)
                      ...+||+++|++         |||||||+.+++.   +.|...+.|+. + +| .+.              ..+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            445999999999         9999999999998   56766666652 2 22 111              125778899


Q ss_pred             EEEEe-----------------------cCCCCCCCCCCCCC
Q psy6968          73 LLIRD-----------------------EGVPPELQPPNPSA   91 (93)
Q Consensus        73 ~~i~d-----------------------~~g~~~~~~~~~~~   91 (93)
                      +++||                       ++|+++|..+++..
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~  138 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLM  138 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBC
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhh
Confidence            99999                       77888887776654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.20  E-value=2.1e-11  Score=83.04  Aligned_cols=63  Identities=21%  Similarity=0.298  Sum_probs=43.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..+||+++|+.|||||||+.+++.+.|...+ ||.+.....+..+  .+.+.+|||+|+++|..++
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~  226 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYK--NISFTVWDVGGQDKIRPLW  226 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEEEEET--TEEEEEEECC-----CCSH
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEEEecC--cEEEEEEECCCCHhHHHHH
Confidence            3479999999999999999999988876544 5644222234444  4788999999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.18  E-value=3.1e-11  Score=86.55  Aligned_cols=67  Identities=18%  Similarity=0.305  Sum_probs=43.3

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eE-E------EEEE--CCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FK-K------EVVI--DGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~-~------~~~~--~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...+||+++|+++||||||+.+++.+.|...+.|+.+. +. +      .+.+  ++..+.+.+||++|+++|..+.
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~  115 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH  115 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence            34599999999999999999999999988888888543 32 2      1122  3346889999999999998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.18  E-value=9.6e-11  Score=70.67  Aligned_cols=59  Identities=22%  Similarity=0.150  Sum_probs=41.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .|++++|+.|||||||+.+++.+.+.  ..+.++ ...+...+..++.  .+.+|||+|++++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~   63 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGD   63 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCcc
Confidence            58999999999999999999988753  222222 2233456677775  67899999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.17  E-value=1.3e-10  Score=76.61  Aligned_cols=64  Identities=16%  Similarity=0.099  Sum_probs=46.5

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ...++++++|+.|+|||||+++++...+  ...+.++ ...+...+.+++.  .+.+|||+|++++..+
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~  100 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYV  100 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccc
Confidence            3569999999999999999999998764  2333333 2223445566664  7889999999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.16  E-value=6e-11  Score=78.37  Aligned_cols=61  Identities=13%  Similarity=0.094  Sum_probs=43.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ..+++++|++|||||||++++++..+.....|.  .......+..++  ..+.+|||+|++.+..
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~   67 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGY   67 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCC
Confidence            489999999999999999999887654322232  111123344444  6889999999998865

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.12  E-value=3.1e-11  Score=75.26  Aligned_cols=61  Identities=16%  Similarity=0.044  Sum_probs=40.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ...+++++|+.|||||||+.+++.+.+.... ++   +...+..+-..+.+.+|||+|++++...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~~~  107 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VS---QEPLSAADYDGSGVTLVDFPGHVKLRYK  107 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CCCCTTCSEEEETTCCBSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCccc-cc---CCCceeeeecCCeEEEEECCCCchHHHH
Confidence            3489999999999999999999988764411 11   1112222224467889999999988654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.11  E-value=3.2e-10  Score=74.95  Aligned_cols=61  Identities=13%  Similarity=0.007  Sum_probs=45.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ce-eEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GR-FKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ..+++++|++|||||||++++++..+.....|+. .. ....+.+++.  .+.+|||+|++.+..
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~   65 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTA   65 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCcccccc
Confidence            4899999999999999999998876643333432 22 2455666765  478999999998765

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.11  E-value=1.3e-10  Score=71.86  Aligned_cols=54  Identities=20%  Similarity=0.075  Sum_probs=41.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ++++++|+.|||||||+.+++.+.|...+.|+.......+.++    .+.+|||+|..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~   55 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK----NHKIIDMPGFG   55 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET----TEEEEECCCBS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC----CEEEEECCCcc
Confidence            6899999999999999999999988877666532212233343    67899999943

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.10  E-value=1.3e-10  Score=77.46  Aligned_cols=61  Identities=16%  Similarity=0.144  Sum_probs=43.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGA-FLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ..+++++|++|||||||++++++.. +..+++.+.-+ .+...++. ...+.+|||+|++++..
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~-~~~~~~~~-~~~l~l~DtpG~~~~~~   64 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVE-RKSGLVKK-NKDLEIQDLPGIYSMSP   64 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCS-CEEEECTT-CTTEEEEECCCCSCSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEE-EEEEEEec-CCeEEEEECCCcCccCC
Confidence            3799999999999999999998755 33333221111 22344555 56789999999998853

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.09  E-value=6.3e-11  Score=75.27  Aligned_cols=57  Identities=19%  Similarity=0.138  Sum_probs=42.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCC---CCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQE---ESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~---~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ...+++++|+.|+|||||+.+++.+.|...   +.|+       +..+-..+.+.+|||+|+++++.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~Dt~G~~~~~~   70 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPL-------SAADYDGSGVTLVDFPGHVKLRY   70 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCE-------EETTGGGSSCEEEECCCCGGGTH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCce-------EEEEeeCceEEEEECCCcHHHHH
Confidence            348999999999999999999999887542   2222       22222446789999999998864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.08  E-value=2.4e-10  Score=75.74  Aligned_cols=62  Identities=23%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh-CCCCCCC-------CCCcc-ee-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT-GAFLQEE-------SPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~-~~f~~~~-------~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..++++++|.+|+|||||+++++. +.+...+       .++.+ .+ ...+..+|..+.+.+|||+|+..+
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~   78 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA   78 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence            458999999999999999988554 5555555       44432 22 345555677789999999998654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.06  E-value=4.2e-10  Score=73.51  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        19 ~~L~~isl~i~~G---e~~~iiG~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~~   69 (235)
T 3tif_A           19 YALKNVNLNIKEG---EFVSIMGPSGSGKSTML-NIIGCL----DKPTEG----EVYIDNIKT   69 (235)
T ss_dssp             EEEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             eeEEeeeEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCce----EEEECCEEc
Confidence            4789999999999   99999999999999999 888887    567777    788888654

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.06  E-value=2.2e-10  Score=75.67  Aligned_cols=64  Identities=20%  Similarity=0.075  Sum_probs=43.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ...++++++|+.|+|||||+++++...+..  .+.++ .......+..++  ..+.+|||+|++++..+
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~  103 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYI  103 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccc
Confidence            346899999999999999999999877532  22222 111122333344  67899999999887543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.03  E-value=7.7e-10  Score=71.02  Aligned_cols=59  Identities=10%  Similarity=-0.008  Sum_probs=40.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-C-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESP-E-GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-t-~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ...+|+++|+.|||||||+.+++.+.|.....+ + .......+..++  +.+.+|||+|+..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~   88 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLD   88 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcC
Confidence            348999999999999999999998876532212 1 121222333444  6789999999943

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.02  E-value=5e-10  Score=74.41  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=44.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC--cceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE--GGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++++++|.+|||||||++++++..+.....|.  .......+..++.  .+.+|||+|++++..+
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~   66 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTI   66 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC-
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccc
Confidence            489999999999999999999887654333333  2223455666664  5678999999998754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.01  E-value=6e-10  Score=72.29  Aligned_cols=52  Identities=21%  Similarity=0.412  Sum_probs=44.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|.++
T Consensus        17 ~~~l~~vsl~i~~G---e~~~iiG~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   68 (224)
T 2pcj_A           17 YEILKGISLSVKKG---EFVSIIGASGSGKSTLL-YILGLL----DAPTEG----KVFLEGKEV   68 (224)
T ss_dssp             EEEEEEEEEEEETT---CEEEEEECTTSCHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             EeeEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            45789999999999   99999999999999999 888887    467777    788888654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.01  E-value=8.8e-10  Score=73.07  Aligned_cols=52  Identities=23%  Similarity=0.427  Sum_probs=44.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        19 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl-k~l~Gl----~~p~~G----~i~~~g~~~   70 (262)
T 1b0u_A           19 HEVLKGVSLQARAG---DVISIIGSSGSGKSTFL-RCINFL----EKPSEG----AIIVNGQNI   70 (262)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEc
Confidence            35789999999999   99999999999999999 888887    467777    788888765

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.00  E-value=9.1e-10  Score=73.60  Aligned_cols=51  Identities=22%  Similarity=0.372  Sum_probs=45.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        22 ~~L~~isl~i~~G---e~~~iiGpnGsGKSTLl-~~l~Gl----~~p~~G----~I~~~G~~i   72 (275)
T 3gfo_A           22 HALKGINMNIKRG---EVTAILGGNGVGKSTLF-QNFNGI----LKPSSG----RILFDNKPI   72 (275)
T ss_dssp             EEEEEEEEEEETT---SEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             eEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHcC----CCCCCe----EEEECCEEC
Confidence            4789999999999   99999999999999999 888887    467777    788898765

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.00  E-value=7.6e-10  Score=73.59  Aligned_cols=52  Identities=29%  Similarity=0.498  Sum_probs=45.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        24 ~~vL~~vsl~i~~G---e~~~liG~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~~~   75 (266)
T 4g1u_C           24 QALINDVSLHIASG---EMVAIIGPNGAGKSTLL-RLLTGY----LSPSHG----ECHLLGQNL   75 (266)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECCTTSCHHHHH-HHHTSS----SCCSSC----EEEETTEET
T ss_pred             eeEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            45789999999999   99999999999999999 888887    567778    788888754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.00  E-value=8.1e-10  Score=72.68  Aligned_cols=52  Identities=33%  Similarity=0.572  Sum_probs=45.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        22 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~i~g~~~   73 (247)
T 2ff7_A           22 PVILDNINLSIKQG---EVIGIVGRSGSGKSTLT-KLIQRF----YIPENG----QVLIDGHDL   73 (247)
T ss_dssp             CEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred             cceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence            45789999999999   99999999999999999 888887    567777    788888653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.00  E-value=9.1e-10  Score=73.16  Aligned_cols=52  Identities=23%  Similarity=0.358  Sum_probs=44.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        37 ~~vL~~vsl~i~~G---ei~~liG~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~i   88 (263)
T 2olj_A           37 LEVLKGINVHIREG---EVVVVIGPSGSGKSTFL-RCLNLL----EDFDEG----EIIIDGINL   88 (263)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEES
T ss_pred             EEEEEeeEEEEcCC---CEEEEEcCCCCcHHHHH-HHHHcC----CCCCCc----EEEECCEEC
Confidence            35789999999999   99999999999999999 888887    567777    788888654

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.99  E-value=8.9e-10  Score=72.21  Aligned_cols=52  Identities=21%  Similarity=0.427  Sum_probs=44.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|..+
T Consensus        15 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   66 (243)
T 1mv5_A           15 EQILRDISFEAQPN---SIIAFAGPSGGGKSTIF-SLLERF----YQPTAG----EITIDGQPI   66 (243)
T ss_dssp             SCSEEEEEEEECTT---EEEEEECCTTSSHHHHH-HHHTTS----SCCSBS----CEEETTEES
T ss_pred             CceEEEeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence            45789999999999   99999999999999999 888887    567777    678888654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.99  E-value=1.3e-09  Score=71.89  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=43.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-c-ceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-G-GRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      -+++++|.+|||||||++++++..+.....|. . +.....+.+++.  .+.+|||+|+..+..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~   63 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVA   63 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccc
Confidence            37999999999999999998877543332233 2 223456677775  778999999988764

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.99  E-value=3e-09  Score=68.82  Aligned_cols=59  Identities=19%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ...+|+++|++|||||||+++++...+.....+.    .......+.+++.  .+.+|||+|...
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~   90 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFD   90 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccC
Confidence            4589999999999999999999987775544331    2222445667775  568999999543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.99  E-value=1e-09  Score=71.85  Aligned_cols=52  Identities=13%  Similarity=0.361  Sum_probs=44.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        19 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   70 (240)
T 1ji0_A           19 IHAIKGIDLKVPRG---QIVTLIGANGAGKTTTL-SAIAGL----VRAQKG----KIIFNGQDI   70 (240)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             eeEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----eEEECCEEC
Confidence            35789999999999   99999999999999999 888887    467777    788888654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.99  E-value=8.8e-10  Score=72.80  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=44.7

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        20 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl-k~l~Gl----~~p~~G----~i~~~g~~~   71 (257)
T 1g6h_A           20 FKALDGVSISVNKG---DVTLIIGPNGSGKSTLI-NVITGF----LKADEG----RVYFENKDI   71 (257)
T ss_dssp             EEEEEEECCEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             EeeEeeeEEEEeCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            35789999999999   99999999999999999 888887    467777    788888654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.98  E-value=8.2e-10  Score=68.70  Aligned_cols=55  Identities=18%  Similarity=0.189  Sum_probs=34.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGV   80 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g   80 (93)
                      ...+++++|+.|||||||+.+++.+.|...+.++.+ .. .....+++   .+.+|||+|
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G   78 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPG   78 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCC
Confidence            348999999999999999999998876665555533 12 22334444   588999999

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.98  E-value=1.1e-09  Score=72.89  Aligned_cols=52  Identities=29%  Similarity=0.459  Sum_probs=45.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        32 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~i   83 (271)
T 2ixe_A           32 VQVLQGLTFTLYPG---KVTALVGPNGSGKSTVA-ALLQNL----YQPTGG----KVLLDGEPL   83 (271)
T ss_dssp             SCCEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred             ceeeEeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCC----EEEECCEEc
Confidence            45789999999999   99999999999999999 888887    567777    788888654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.98  E-value=2.3e-09  Score=70.13  Aligned_cols=61  Identities=20%  Similarity=0.184  Sum_probs=45.0

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCC---cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGA-FLQEESPE---GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t---~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ...+|+++|+.|||||||+.+++... |...+.|+   .......+.+++.  .+.+|||+|+..+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~   85 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWK   85 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCC
Confidence            45899999999999999999999866 55555443   2222345566664  57899999987654

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.97  E-value=1.5e-09  Score=75.07  Aligned_cols=52  Identities=27%  Similarity=0.515  Sum_probs=45.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|+.+
T Consensus        17 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl----~~p~~G----~I~i~G~~i   68 (359)
T 3fvq_A           17 TPVLNDISLSLDPG---EILFIIGASGCGKTTLL-RCLAGF----EQPDSG----EISLSGKTI   68 (359)
T ss_dssp             EEEEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred             EEEEEeeEEEEcCC---CEEEEECCCCchHHHHH-HHHhcC----CCCCCc----EEEECCEEC
Confidence            35689999999999   99999999999999999 888887    567778    889999866

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.96  E-value=1.7e-09  Score=71.83  Aligned_cols=52  Identities=25%  Similarity=0.454  Sum_probs=44.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        20 ~~vl~~vsl~i~~G---e~~~liG~nGsGKSTLl-~~i~Gl----~~p~~G----~I~~~g~~~   71 (266)
T 2yz2_A           20 KKALENVSLVINEG---ECLLVAGNTGSGKSTLL-QIVAGL----IEPTSG----DVLYDGERK   71 (266)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             cceeeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCc----EEEECCEEC
Confidence            35789999999999   99999999999999999 888887    467777    788888654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.96  E-value=9.5e-10  Score=75.77  Aligned_cols=58  Identities=19%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh-CCCCCCCC--------CCcc-ee-EEEEEECCeEEEEEEEecCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT-GAFLQEES--------PEGG-RF-KKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~-~~f~~~~~--------~t~~-~~-~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      .++++++|++|+|||||+.+++. +.|...+.        ++.+ .+ ...+..++..+.+.+|||+|+
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~  105 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY  105 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC----
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence            48999999999999999988544 44544432        2322 12 223445677789999999999

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.96  E-value=1.5e-09  Score=71.85  Aligned_cols=52  Identities=19%  Similarity=0.413  Sum_probs=44.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        28 ~~vl~~vsl~i~~G---ei~~l~G~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~~   79 (256)
T 1vpl_A           28 KEILKGISFEIEEG---EIFGLIGPNGAGKTTTL-RIISTL----IKPSSG----IVTVFGKNV   79 (256)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred             EEEEEeeEEEEcCC---cEEEEECCCCCCHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 888887    467777    788888653

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.96  E-value=1.1e-09  Score=73.25  Aligned_cols=52  Identities=19%  Similarity=0.321  Sum_probs=44.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        34 ~~vL~~isl~i~~G---e~~~liG~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~~   85 (279)
T 2ihy_A           34 KTILKKISWQIAKG---DKWILYGLNGAGKTTLL-NILNAY----EPATSG----TVNLFGKMP   85 (279)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTBCC
T ss_pred             EEEEEeeeEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCCe----EEEECCEEc
Confidence            35789999999999   99999999999999999 888887    467777    788888654

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.96  E-value=8.8e-10  Score=74.72  Aligned_cols=52  Identities=25%  Similarity=0.383  Sum_probs=45.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        67 ~~vL~~isl~i~~G---e~vaivG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~G~~i  118 (306)
T 3nh6_A           67 RETLQDVSFTVMPG---QTLALVGPSGAGKSTIL-RLLFRF----YDISSG----CIRIDGQDI  118 (306)
T ss_dssp             CEEEEEEEEEECTT---CEEEEESSSCHHHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred             CceeeeeeEEEcCC---CEEEEECCCCchHHHHH-HHHHcC----CCCCCc----EEEECCEEc
Confidence            45789999999999   99999999999999999 888887    678888    788888754

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.95  E-value=1.5e-09  Score=70.23  Aligned_cols=51  Identities=18%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        23 ~il~~vsl~i~~G---e~~~iiG~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~~~   73 (214)
T 1sgw_A           23 PVLERITMTIEKG---NVVNFHGPNGIGKTTLL-KTISTY----LKPLKG----EIIYNGVPI   73 (214)
T ss_dssp             EEEEEEEEEEETT---CCEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred             eEEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCe----EEEECCEEh
Confidence            5789999999999   99999999999999999 888887    467777    788888654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.95  E-value=5.5e-10  Score=70.42  Aligned_cols=62  Identities=15%  Similarity=0.083  Sum_probs=37.3

Q ss_pred             eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-e-EEEEEECCeEEEEEEEecCCCCC
Q psy6968          16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-F-KKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      +.+.++   .+++++|++|||||||++++++..|...+.|+.+. + ...+.+++   .+.+||++|+..
T Consensus        21 ~~~~~~---~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~   84 (210)
T 1pui_A           21 LPSDTG---IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGY   84 (210)
T ss_dssp             SSCSCS---EEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC-
T ss_pred             CCCCCC---cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcc
Confidence            566667   89999999999999999777766544444565442 1 23334443   467999999753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.94  E-value=2.3e-09  Score=75.28  Aligned_cols=57  Identities=19%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      +|++||.++||||||++|++.+.+.  ..++.+ .+.....+.+++..  +.+|||+|++..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~   62 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDN   62 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCcccc
Confidence            7999999999999999999987632  222222 23335677888864  578999998864

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.94  E-value=2.2e-09  Score=74.39  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=45.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|+++
T Consensus        42 ~aL~~vsl~i~~G---ei~~IiGpnGaGKSTLl-r~i~GL----~~p~~G----~I~i~G~~i   92 (366)
T 3tui_C           42 QALNNVSLHVPAG---QIYGVIGASGAGKSTLI-RCVNLL----ERPTEG----SVLVDGQEL   92 (366)
T ss_dssp             EEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEeeEEEEcCC---CEEEEEcCCCchHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    567878    788888764

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.93  E-value=2.3e-09  Score=74.64  Aligned_cols=52  Identities=21%  Similarity=0.335  Sum_probs=45.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|+.+
T Consensus        16 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl----~~p~~G----~I~i~G~~~   67 (381)
T 3rlf_A           16 VVVSKDINLDIHEG---EFVVFVGPSGCGKSTLL-RMIAGL----ETITSG----DLFIGEKRM   67 (381)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEeeeEEEECCC---CEEEEEcCCCchHHHHH-HHHHcC----CCCCCe----EEEECCEEC
Confidence            34689999999999   99999999999999999 888887    567778    788888765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.92  E-value=3.1e-09  Score=73.53  Aligned_cols=52  Identities=21%  Similarity=0.346  Sum_probs=45.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        16 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i   67 (362)
T 2it1_A           16 FTALNNINLKIKDG---EFMALLGPSGSGKSTLL-YTIAGI----YKPTSG----KIYFDEKDV   67 (362)
T ss_dssp             SEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEEeeEEEECCC---CEEEEECCCCchHHHHH-HHHhcC----CCCCce----EEEECCEEC
Confidence            34789999999999   99999999999999999 888887    467777    788888754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.91  E-value=3.6e-09  Score=73.40  Aligned_cols=51  Identities=22%  Similarity=0.373  Sum_probs=45.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ |.+.+.    ..|+.|    ++.++|+.+
T Consensus        17 ~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~~   67 (372)
T 1g29_1           17 TAVREMSLEVKDG---EFMILLGPSGCGKTTTL-RMIAGL----EEPSRG----QIYIGDKLV   67 (372)
T ss_dssp             EEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCcHHHHHH-HHHHcC----CCCCcc----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    467777    788898766

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.91  E-value=2.9e-09  Score=73.57  Aligned_cols=51  Identities=20%  Similarity=0.345  Sum_probs=44.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        17 ~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i   67 (359)
T 2yyz_A           17 KAVDGVSFEVKDG---EFVALLGPSGCGKTTTL-LMLAGI----YKPTSG----EIYFDDVLV   67 (359)
T ss_dssp             EEEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEeeeEEEEcCC---CEEEEEcCCCchHHHHH-HHHHCC----CCCCcc----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    467777    788888754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.90  E-value=3.4e-09  Score=68.93  Aligned_cols=50  Identities=24%  Similarity=0.499  Sum_probs=43.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.
T Consensus        21 ~~il~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~   70 (229)
T 2pze_A           21 TPVLKDINFKIERG---QLLAVAGSTGAGKTSLL-MMIMGE----LEPSEG----KIKHSGR   70 (229)
T ss_dssp             CCSEEEEEEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEECSC
T ss_pred             ceeeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCcc----EEEECCE
Confidence            45789999999999   99999999999999999 888887    567777    7788873

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.90  E-value=3e-09  Score=73.41  Aligned_cols=52  Identities=29%  Similarity=0.546  Sum_probs=45.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        28 ~~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i   79 (355)
T 1z47_A           28 ARSVRGVSFQIREG---EMVGLLGPSGSGKTTIL-RLIAGL----ERPTKG----DVWIGGKRV   79 (355)
T ss_dssp             TTCEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             CEEEeeeEEEECCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCcc----EEEECCEEC
Confidence            35789999999999   99999999999999999 888887    467777    788888754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=98.90  E-value=2.4e-09  Score=75.23  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=39.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAF--LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ..+++++|++|||||||++++++..+  ...+..+ .+.....+.++|.  .+.+|||+|+.++..
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~  243 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSR  243 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----
T ss_pred             CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccc
Confidence            38999999999999999988887654  2222222 2222446788887  457899999866543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=98.90  E-value=4.5e-09  Score=70.83  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=40.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-C-cceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQ-EESP-E-GGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~-t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..+++++|.+|||||||+++++...+.. ...| + .......+..+  ..++.+|||+|+.+.
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~   68 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKP   68 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccch
Confidence            3689999999999999999999887642 1222 2 22122223333  467889999998874

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.90  E-value=2.4e-09  Score=70.00  Aligned_cols=50  Identities=22%  Similarity=0.397  Sum_probs=43.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.
T Consensus        18 ~~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~I~~~g~   67 (237)
T 2cbz_A           18 PPTLNGITFSIPEG---ALVAVVGQVGCGKSSLL-SALLAE----MDKVEG----HVAIKGS   67 (237)
T ss_dssp             CCSEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTC----SEEEEE----EEEECSC
T ss_pred             CceeeeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCc----eEEECCE
Confidence            45789999999999   99999999999999999 888887    456667    7788873

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.89  E-value=4.1e-09  Score=73.15  Aligned_cols=51  Identities=24%  Similarity=0.404  Sum_probs=44.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        25 ~vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i   75 (372)
T 1v43_A           25 TAVNKLNLTIKDG---EFLVLLGPSGCGKTTTL-RMIAGL----EEPTEG----RIYFGDRDV   75 (372)
T ss_dssp             EEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEeeeEEEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCce----EEEECCEEC
Confidence            4689999999999   99999999999999999 888887    567777    788888654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.88  E-value=2.9e-09  Score=73.37  Aligned_cols=50  Identities=24%  Similarity=0.521  Sum_probs=44.6

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        20 vl~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~i~g~~i   69 (353)
T 1oxx_K           20 ALDNVNINIENG---ERFGILGPSGAGKTTFM-RIIAGL----DVPSTG----ELYFDDRLV   69 (353)
T ss_dssp             EEEEEEEEECTT---CEEEEECSCHHHHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred             eEeceEEEECCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            789999999999   99999999999999999 888887    467777    788888765

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.88  E-value=3.1e-09  Score=70.04  Aligned_cols=50  Identities=26%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+ |    ++.++|..+
T Consensus        14 ~vl~~vsl~i~~G---e~~~liG~NGsGKSTLl-k~l~Gl----~~p~-G----~i~~~g~~~   63 (249)
T 2qi9_C           14 TRLGPLSGEVRAG---EILHLVGPNGAGKSTLL-ARMAGM----TSGK-G----SIQFAGQPL   63 (249)
T ss_dssp             TTEEEEEEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCE-E----EEEETTEEG
T ss_pred             EEEeeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCC-e----EEEECCEEC
Confidence            5689999999999   99999999999999999 888887    4577 7    788888653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.87  E-value=1.7e-09  Score=72.83  Aligned_cols=57  Identities=19%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC-CCCCCCC--------CCcc-ee-EEEEEECCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG-AFLQEES--------PEGG-RF-KKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~-~f~~~~~--------~t~~-~~-~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      ++++++|++|||||||+.++... .++..+.        ++.. .+ ...+..++..+.+.+||++|+
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~   86 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGY   86 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC--
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhh
Confidence            78899999999999999776653 5554431        1211 11 112233455678999999998

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.86  E-value=3.6e-09  Score=72.88  Aligned_cols=50  Identities=18%  Similarity=0.455  Sum_probs=44.5

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        15 ~l~~vsl~i~~G---e~~~llGpnGsGKSTLL-r~iaGl----~~p~~G----~I~~~g~~i   64 (348)
T 3d31_A           15 SLDNLSLKVESG---EYFVILGPTGAGKTLFL-ELIAGF----HVPDSG----RILLDGKDV   64 (348)
T ss_dssp             EEEEEEEEECTT---CEEEEECCCTHHHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEeeeEEEEcCC---CEEEEECCCCccHHHHH-HHHHcC----CCCCCc----EEEECCEEC
Confidence            789999999999   99999999999999999 888887    567777    788888754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=98.85  E-value=2.4e-09  Score=76.27  Aligned_cols=60  Identities=15%  Similarity=0.197  Sum_probs=31.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      ++|+++|++|||||||+++++...  +...+..+ .+.+...+.++|  +.+.+|||+|++++..
T Consensus       234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~  296 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGE  296 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC---------
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchh
Confidence            899999999999999999988764  23333333 233345677777  4688999999987653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.84  E-value=7e-09  Score=68.65  Aligned_cols=50  Identities=22%  Similarity=0.373  Sum_probs=42.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.| .|    ++.++|..+
T Consensus        34 ~vl~~vsl~i~~G---e~~~i~G~nGsGKSTLl-~~l~Gl----~~~-~G----~I~i~g~~i   83 (260)
T 2ghi_A           34 RTLKSINFFIPSG---TTCALVGHTGSGKSTIA-KLLYRF----YDA-EG----DIKIGGKNV   83 (260)
T ss_dssp             CSEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCC-EE----EEEETTEEG
T ss_pred             ceeEeeEEEECCC---CEEEEECCCCCCHHHHH-HHHhcc----CCC-Ce----EEEECCEEh
Confidence            4789999999999   99999999999999999 888886    334 56    788888654

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.82  E-value=8e-09  Score=68.61  Aligned_cols=50  Identities=24%  Similarity=0.412  Sum_probs=43.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+. |   ..++++|++|+|||||+ +.+.+.    . |+.|    ++.++|..+
T Consensus        18 ~~il~~vsl~i~-G---e~~~i~G~NGsGKSTLl-k~l~Gl----~-p~~G----~I~~~g~~~   67 (263)
T 2pjz_A           18 RFSLENINLEVN-G---EKVIILGPNGSGKTTLL-RAISGL----L-PYSG----NIFINGMEV   67 (263)
T ss_dssp             EEEEEEEEEEEC-S---SEEEEECCTTSSHHHHH-HHHTTS----S-CCEE----EEEETTEEG
T ss_pred             ceeEEeeeEEEC-C---EEEEEECCCCCCHHHHH-HHHhCC----C-CCCc----EEEECCEEC
Confidence            357899999999 9   99999999999999999 888887    5 7777    788888654

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.81  E-value=8.7e-09  Score=71.33  Aligned_cols=60  Identities=17%  Similarity=0.054  Sum_probs=39.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-CcceeEEEEEECCe---------------EEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESP-EGGRFKKEVVIDGH---------------SHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~-t~~~~~~~~~~~g~---------------~i~~~i~d~~g~~~~   84 (93)
                      .++++||.++||||||+++++...+.. .|+. |.+.....+.+++.               ...+++|||+|+.++
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            789999999999999999988865422 2221 21111114555553               257899999999876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.81  E-value=7.3e-09  Score=68.12  Aligned_cols=54  Identities=24%  Similarity=0.449  Sum_probs=43.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   ..++++|++|+|||||+ +.+.+..  .+.|+.|    ++.++|..+
T Consensus        16 ~~vl~~vsl~i~~G---e~~~l~G~nGsGKSTLl-k~l~Gl~--~~~p~~G----~I~~~g~~~   69 (250)
T 2d2e_A           16 ETILKGVNLVVPKG---EVHALMGPNGAGKSTLG-KILAGDP--EYTVERG----EILLDGENI   69 (250)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTCT--TCEEEEE----EEEETTEEC
T ss_pred             EEEEeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCC--CCCCCce----EEEECCEEC
Confidence            35789999999999   99999999999999999 7777751  1345666    788888754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.80  E-value=2e-08  Score=62.08  Aligned_cols=54  Identities=17%  Similarity=0.123  Sum_probs=37.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGV   80 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g   80 (93)
                      ...+++++|+.|||||||+++++.+.+.. +.++.+ .+ ......+.   .+.+|||+|
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G   77 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPG   77 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCC
Confidence            44799999999999999999999887432 334422 12 12222333   467999999

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.80  E-value=2.4e-09  Score=75.12  Aligned_cols=58  Identities=14%  Similarity=0.219  Sum_probs=40.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ..+++++|+++||||||+++++...+.  ..+..+ .+.+...+.+++..  +.+|||+|+.+
T Consensus       175 ~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~  235 (436)
T 2hjg_A          175 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRK  235 (436)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCc
Confidence            489999999999999999999987653  233333 23334566778764  78999999844

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.79  E-value=8.3e-09  Score=68.54  Aligned_cols=54  Identities=22%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+...  +.|+.|    ++.++|..+
T Consensus        33 ~~vl~~vsl~i~~G---e~~~l~G~NGsGKSTLl-k~l~Gl~~--~~p~~G----~I~~~g~~i   86 (267)
T 2zu0_C           33 KAILRGLSLDVHPG---EVHAIMGPNGSGKSTLS-ATLAGRED--YEVTGG----TVEFKGKDL   86 (267)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTCTT--CEEEEE----EEEETTEEG
T ss_pred             EEEEEeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCCCC--CCCCCe----EEEECCEEC
Confidence            35789999999999   99999999999999999 77777521  245566    788888653

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.79  E-value=9.5e-09  Score=74.48  Aligned_cols=52  Identities=23%  Similarity=0.464  Sum_probs=45.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       356 ~~~l~~i~l~i~~G---~~~~ivG~sGsGKSTll-~~l~g~----~~p~~G----~i~~~g~~~  407 (582)
T 3b5x_A          356 KPALSHVSFSIPQG---KTVALVGRSGSGKSTIA-NLFTRF----YDVDSG----SICLDGHDV  407 (582)
T ss_pred             ccccccceEEECCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCC----EEEECCEEh
Confidence            35789999999999   99999999999999999 888887    678888    788888654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.79  E-value=8.8e-09  Score=74.65  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=45.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       356 ~~~l~~v~~~i~~G---~~~~ivG~sGsGKSTLl-~~l~g~----~~p~~G----~i~~~g~~~  407 (582)
T 3b60_A          356 VPALRNINLKIPAG---KTVALVGRSGSGKSTIA-SLITRF----YDIDEG----HILMDGHDL  407 (582)
T ss_dssp             CCSEEEEEEEECTT---CEEEEEECTTSSHHHHH-HHHTTT----TCCSEE----EEEETTEET
T ss_pred             CccccceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhhc----cCCCCC----eEEECCEEc
Confidence            45789999999999   99999999999999999 888887    678878    788888654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.77  E-value=3.3e-08  Score=66.64  Aligned_cols=62  Identities=18%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCC--CCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQE--ESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~--~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ..-+|+++|.+|||||||++++++..+...  ...+ ..........+ ...++.+|||+|+.++.
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~   73 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPK   73 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccc
Confidence            346999999999999999999998876431  1112 22222233443 14678899999998764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.77  E-value=8.8e-09  Score=69.29  Aligned_cols=50  Identities=24%  Similarity=0.499  Sum_probs=42.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.
T Consensus        51 ~~vl~~isl~i~~G---e~~~i~G~NGsGKSTLl-k~l~Gl----~~p~~G----~I~~~g~  100 (290)
T 2bbs_A           51 TPVLKDINFKIERG---QLLAVAGSTGAGKTSLL-MMIMGE----LEPSEG----KIKHSGR  100 (290)
T ss_dssp             CCSEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHTTS----SCEEEE----EEECCSC
T ss_pred             ceEEEeeEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----CCCCCc----EEEECCE
Confidence            45789999999999   99999999999999999 888887    456667    7778773

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.76  E-value=8.4e-09  Score=74.73  Aligned_cols=52  Identities=21%  Similarity=0.447  Sum_probs=45.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.++|.++
T Consensus       354 ~~~l~~isl~i~~G---~~~~ivG~sGsGKSTll-~~l~g~----~~p~~G----~i~~~g~~~  405 (578)
T 4a82_A          354 APILKDINLSIEKG---ETVAFVGMSGGGKSTLI-NLIPRF----YDVTSG----QILIDGHNI  405 (578)
T ss_dssp             CCSEEEEEEEECTT---CEEEEECSTTSSHHHHH-TTTTTS----SCCSEE----EEEETTEEG
T ss_pred             CcceeeeEEEECCC---CEEEEECCCCChHHHHH-HHHhcC----CCCCCc----EEEECCEEh
Confidence            35789999999999   99999999999999999 777776    678888    788998754

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.76  E-value=8.1e-09  Score=65.53  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEEC-CeEEEEEEEecCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVID-GHSHLLLIRDEGVPP   82 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~--~~~~~~~~~-g~~i~~~i~d~~g~~   82 (93)
                      ...+|+++|+.|||||||+++++.+.+.....++.+  .......+. .....+.+|||+|..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~   90 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYG   90 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCC
Confidence            348999999999999999999988763221222111  111123333 334678899999954

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.72  E-value=6.3e-09  Score=73.24  Aligned_cols=66  Identities=9%  Similarity=0.023  Sum_probs=43.4

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ....+++++|+.++|||||+.+++...+..  .+..+ .......+.+++.. .+.+|||+|+++|..+.
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~  100 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELG  100 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchh
Confidence            345899999999999999998888776532  22222 22234456666542 78899999999987654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.72  E-value=5.3e-09  Score=73.76  Aligned_cols=56  Identities=14%  Similarity=0.243  Sum_probs=38.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGV   80 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g   80 (93)
                      ...+++++|++++|||||+++++...  +...+.++ .+.+...+.+++.  .+.+|||+|
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G  252 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAG  252 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGG
T ss_pred             ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCC
Confidence            34899999999999999999998654  22233333 2223446677776  678999999

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.72  E-value=1.2e-08  Score=74.26  Aligned_cols=52  Identities=19%  Similarity=0.436  Sum_probs=45.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       368 ~~~l~~isl~i~~G---~~~~ivG~sGsGKSTll-~~l~g~----~~p~~G----~i~~~g~~i  419 (598)
T 3qf4_B          368 KPVLKDITFHIKPG---QKVALVGPTGSGKTTIV-NLLMRF----YDVDRG----QILVDGIDI  419 (598)
T ss_dssp             SCSCCSEEEECCTT---CEEEEECCTTSSTTHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred             CccccceEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcC----cCCCCe----EEEECCEEh
Confidence            34789999999999   99999999999999999 888887    678888    788998754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=98.71  E-value=1e-08  Score=73.21  Aligned_cols=59  Identities=31%  Similarity=0.420  Sum_probs=45.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC--CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCC-CCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA--FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP-ELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~--f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~-~~~   85 (93)
                      ++|+++|.++||||||+++++...  +...+..+ .+.....+.++|.  .+.+|||+|+. ++.
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~  306 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETN  306 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCC
T ss_pred             CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccch
Confidence            799999999999999999998864  34445444 3333556778875  57899999998 664

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.70  E-value=1.3e-08  Score=73.92  Aligned_cols=52  Identities=25%  Similarity=0.441  Sum_probs=45.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       356 ~~~l~~isl~i~~G---e~~~ivG~sGsGKSTll-~~l~g~----~~~~~G----~i~i~g~~i  407 (587)
T 3qf4_A          356 DPVLSGVNFSVKPG---SLVAVLGETGSGKSTLM-NLIPRL----IDPERG----RVEVDELDV  407 (587)
T ss_dssp             CCSEEEEEEEECTT---CEEEEECSSSSSHHHHH-HTTTTS----SCCSEE----EEEESSSBG
T ss_pred             CcceeceEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----ccCCCc----EEEECCEEc
Confidence            45789999999999   99999999999999999 888877    678878    788888653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.68  E-value=1.6e-08  Score=70.53  Aligned_cols=50  Identities=30%  Similarity=0.555  Sum_probs=42.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHS   70 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~   70 (93)
                      ...++++++++.+|   ..++++|++|||||||+ +.+.+..    . +.|    ++.++|+.
T Consensus        34 ~~~L~~vsl~i~~G---e~~~llGpsGsGKSTLL-r~iaGl~----~-~~G----~I~i~G~~   83 (390)
T 3gd7_A           34 NAILENISFSISPG---QRVGLLGRTGSGKSTLL-SAFLRLL----N-TEG----EIQIDGVS   83 (390)
T ss_dssp             CCSEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHHTCS----E-EEE----EEEESSCB
T ss_pred             eEEeeceeEEEcCC---CEEEEECCCCChHHHHH-HHHhCCC----C-CCe----EEEECCEE
Confidence            45789999999999   99999999999999999 8888862    2 456    77888754

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.68  E-value=2e-08  Score=78.57  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=46.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   .++++||++|+|||||+ +.+.+.    |+|+.|    .+.+||.++
T Consensus      1093 ~VL~~isl~I~~G---e~vaIVG~SGsGKSTL~-~lL~rl----~~p~~G----~I~iDG~di 1143 (1321)
T 4f4c_A         1093 EILKGLSFSVEPG---QTLALVGPSGCGKSTVV-ALLERF----YDTLGG----EIFIDGSEI 1143 (1321)
T ss_dssp             CSEEEEEEEECTT---CEEEEECSTTSSTTSHH-HHHTTS----SCCSSS----EEEETTEET
T ss_pred             ccccceeEEECCC---CEEEEECCCCChHHHHH-HHHhcC----ccCCCC----EEEECCEEh
Confidence            5799999999999   99999999999999999 888887    789888    899999765

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.68  E-value=3.1e-08  Score=69.64  Aligned_cols=61  Identities=21%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCC-C-------CCCcc-ee-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQE-E-------SPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~-------~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      .++++++|++|||||||++.+++..+... +       .++.. .+ ...+..++....+.+||++|++++
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~  101 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA  101 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence            36889999999999999988877665321 1       11111 11 111122344568999999998765

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.67  E-value=5.7e-08  Score=63.65  Aligned_cols=49  Identities=27%  Similarity=0.524  Sum_probs=40.2

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++++.+    ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|..+
T Consensus        14 ~l~~isl~i~~----e~~~liG~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~g~~~   62 (240)
T 2onk_A           14 FRLNVDFEMGR----DYCVLLGPTGAGKSVFL-ELIAGI----VKPDRG----EVRLNGADI   62 (240)
T ss_dssp             EEEEEEEEECS----SEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEeeeEEEECC----EEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEECCEEC
Confidence            48888888854    47899999999999999 888887    467777    788888754

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.65  E-value=5.2e-08  Score=64.26  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=37.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|
T Consensus        18 ~~vl~~isl~i~~G---e~~~l~G~nGsGKSTLl-~~l~Gl----~~p~~G   60 (253)
T 2nq2_C           18 NFLFQQLNFDLNKG---DILAVLGQNGCGKSTLL-DLLLGI----HRPIQG   60 (253)
T ss_dssp             TEEEEEEEEEEETT---CEEEEECCSSSSHHHHH-HHHTTS----SCCSEE
T ss_pred             CeEEEEEEEEECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc
Confidence            45789999999999   99999999999999999 888887    456766

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.65  E-value=7.2e-08  Score=66.58  Aligned_cols=55  Identities=18%  Similarity=0.179  Sum_probs=37.3

Q ss_pred             ee-EEEECCCCCCHHHHHHHHHhCCCCCC--CCCCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968          25 LR-LGIVGSLASGKSALVHRFMTGAFLQE--ESPEGGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~k-v~lvG~~g~GKtsl~~r~~~~~f~~~--~~~t~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      ++ ++++|++|||||||+++++...+...  ..+|.+.....+.++|.  .+.+|||+|+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~  236 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGF  236 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCB
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCc
Confidence            56 89999999999999988887665321  12223333557888884  5689999996

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=98.63  E-value=1.2e-08  Score=72.52  Aligned_cols=59  Identities=20%  Similarity=0.288  Sum_probs=36.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF--LQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ++++++|++|||||||+++++...+  ...+..+. +.....+.++|.  .+.+|||+|+.++.
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~  286 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI--PVQVLDTAGIRETS  286 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE--EEEECC--------
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE--EEEEEECCccccch
Confidence            7999999999999999999987543  33343332 222346677885  45899999986653

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.62  E-value=5.3e-08  Score=66.71  Aligned_cols=59  Identities=17%  Similarity=-0.056  Sum_probs=39.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-CcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQE-ESP-EGGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~-t~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ..+++++|++|||||||+.+++...+... +.. +.+.....+..++  ..+.+|||+|+.++
T Consensus       167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~  227 (357)
T 2e87_A          167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDR  227 (357)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCcccc
Confidence            37999999999999999988887664322 111 2222222333343  57899999998764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.59  E-value=6.5e-08  Score=67.67  Aligned_cols=62  Identities=21%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCe---------------EEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGH---------------SHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~---------------~i~~~i~d~~g~~~~~~   86 (93)
                      .++++||.+|||||||++++....+.....|  |.......+.+++.               ...+.+||++|+.++..
T Consensus        23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as  101 (396)
T 2ohf_A           23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH  101 (396)
T ss_dssp             CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence            8999999999999999988876644222112  11112235555543               23589999999887543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=98.59  E-value=1.3e-08  Score=71.46  Aligned_cols=55  Identities=18%  Similarity=0.096  Sum_probs=32.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      .+|++||+++||||||+++++...+.. ..++    .+.....+.+++  ..+.+|||+|++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~-v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~   62 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGID   62 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCS--SCCEEEC-----
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCCccceEEEEEEECC--ceEEEEECCCCC
Confidence            689999999999999999998866532 1122    222223333444  468899999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.59  E-value=7.4e-08  Score=75.21  Aligned_cols=51  Identities=25%  Similarity=0.414  Sum_probs=45.5

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++++.+|   .++++||++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus       404 ~vL~~isl~i~~G---~~~~ivG~sGsGKSTl~-~ll~g~----~~~~~G----~i~i~g~~i  454 (1284)
T 3g5u_A          404 QILKGLNLKVKSG---QTVALVGNSGCGKSTTV-QLMQRL----YDPLDG----MVSIDGQDI  454 (1284)
T ss_dssp             CSEEEEEEEECTT---CEEEEECCSSSSHHHHH-HHTTTS----SCCSEE----EEEETTEEG
T ss_pred             cceecceEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe----EEEECCEEH
Confidence            5789999999999   99999999999999999 888887    678888    889998754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.58  E-value=3.6e-09  Score=76.43  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=44.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEE-CCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVI-DGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~-~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+++++|..++|||||+.++....+...+.++. ..+ ...+.+ ++.  .+.+|||+|+++|..++..
T Consensus         5 pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~   71 (537)
T 3izy_P            5 PVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRAR   71 (537)
T ss_dssp             CBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHH
Confidence            789999999999999999998766554444431 111 112233 233  6789999999999887653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.58  E-value=9.4e-08  Score=74.80  Aligned_cols=52  Identities=19%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+++|   .++++||++|+|||||+ +.+.+.    |+|+.|    ++.+||.++
T Consensus       431 ~~vL~~isl~i~~G---~~vaivG~sGsGKSTll-~ll~~~----~~~~~G----~I~idG~~i  482 (1321)
T 4f4c_A          431 VPILRGMNLRVNAG---QTVALVGSSGCGKSTII-SLLLRY----YDVLKG----KITIDGVDV  482 (1321)
T ss_dssp             SCSEEEEEEEECTT---CEEEEEECSSSCHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred             CceeeceEEeecCC---cEEEEEecCCCcHHHHH-HHhccc----cccccC----cccCCCccc
Confidence            45789999999999   99999999999999999 888887    788888    889998654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=98.57  E-value=1.2e-07  Score=66.77  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +...+++++|..++|||||+.+++.
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~   39 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMY   39 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHH
Confidence            4458999999999999999999854

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.57  E-value=2.8e-08  Score=70.59  Aligned_cols=26  Identities=31%  Similarity=0.650  Sum_probs=22.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      +..++++++|..++|||||+.+++..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            44589999999999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.54  E-value=3.8e-07  Score=61.25  Aligned_cols=56  Identities=16%  Similarity=0.083  Sum_probs=38.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCC-C-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESP-E-GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~-t-~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      .+++++|++|||||||+++++...+.. ...| + .......+..++  .++.+|||+|++
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~   67 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLH   67 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCC
Confidence            689999999999999999998876531 1112 2 221222333343  577899999987

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=98.54  E-value=4.6e-07  Score=62.99  Aligned_cols=27  Identities=30%  Similarity=0.564  Sum_probs=22.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ...++++++|..++|||||+.+++...
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~   32 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIW   32 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence            345899999999999999998887643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.49  E-value=3e-08  Score=69.89  Aligned_cols=58  Identities=17%  Similarity=0.086  Sum_probs=35.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ..+|+++|++|||||||+++++...+.. ..++.+ .. .....+......+.+|||+|..
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~   82 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGID   82 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC--
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCC
Confidence            3699999999999999999998866431 111111 11 1122333334578999999943

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.47  E-value=9.9e-08  Score=74.51  Aligned_cols=51  Identities=25%  Similarity=0.462  Sum_probs=44.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   .+++++|++|+|||||+ +.+.+.    ++|+.|    ++.+||.++
T Consensus      1047 ~~l~~vsl~i~~G---e~v~ivG~sGsGKSTl~-~~l~g~----~~p~~G----~I~i~g~~i 1097 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKG---QTLALVGSSGCGKSTVV-QLLERF----YDPMAG----SVFLDGKEI 1097 (1284)
T ss_dssp             CSBSSCCEEECSS---SEEEEECSSSTTHHHHH-HHHTTS----SCCSEE----EEESSSSCT
T ss_pred             eeecceeEEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----cCCCCC----EEEECCEEc
Confidence            4789999999999   99999999999999999 888887    678888    788888653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.46  E-value=4.9e-07  Score=63.08  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ++++++|.++||||||+++++...
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            479999999999999998888765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.45  E-value=1.7e-08  Score=62.44  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=29.9

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .++++++.+.++   ..++++|++|+|||||+ +.+.+..
T Consensus        22 ~l~~vsl~i~~G---e~v~L~G~nGaGKTTLl-r~l~g~l   57 (158)
T 1htw_A           22 AEILLKLHTEKA---IMVYLNGDLGAGKTTLT-RGMLQGI   57 (158)
T ss_dssp             HHHHHHHCCSSC---EEEEEECSTTSSHHHHH-HHHHHHT
T ss_pred             HHhccccccCCC---CEEEEECCCCCCHHHHH-HHHHHhC
Confidence            356778888999   89999999999999999 6665543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.44  E-value=2.6e-07  Score=61.12  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=24.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      ..+|+++|+.+||||||++++++..|.
T Consensus        26 ~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           26 LPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            379999999999999999999988774

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.42  E-value=3.3e-07  Score=63.50  Aligned_cols=61  Identities=18%  Similarity=0.076  Sum_probs=38.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC-CCCCCC-CcceeEEEEEECC-------------------eEEEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF-LQEESP-EGGRFKKEVVIDG-------------------HSHLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~-t~~~~~~~~~~~g-------------------~~i~~~i~d~~g~~~   83 (93)
                      .++++||.+|||||||+++++.... ..+++. |.......+.+.+                   ....+++|||+|+.+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            5899999999999999988876431 122221 1111111233332                   235789999999987


Q ss_pred             CC
Q psy6968          84 LQ   85 (93)
Q Consensus        84 ~~   85 (93)
                      +.
T Consensus        82 ~a   83 (368)
T 2dby_A           82 GA   83 (368)
T ss_dssp             CC
T ss_pred             cc
Confidence            63

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.42  E-value=3.2e-07  Score=67.12  Aligned_cols=27  Identities=30%  Similarity=0.623  Sum_probs=23.5

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ....++++++|..++|||||+.+++..
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHh
Confidence            344589999999999999999999865

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.40  E-value=1.4e-07  Score=68.91  Aligned_cols=64  Identities=17%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCcceeEEEEEEC-----------C-----eEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEE----SPEGGRFKKEVVID-----------G-----HSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~----~~t~~~~~~~~~~~-----------g-----~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|..++|||||+.+++...+....    .++.+.+  .+..+           +     ....+.+|||+|+++|
T Consensus         6 ~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~--~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGAT--EIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEE--EEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             cEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeE--EEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            79999999999999999998876543321    1222221  11110           0     1125899999999999


Q ss_pred             CCCCCC
Q psy6968          85 QPPNPS   90 (93)
Q Consensus        85 ~~~~~~   90 (93)
                      ..++..
T Consensus        84 ~~~~~r   89 (594)
T 1g7s_A           84 TTLRKR   89 (594)
T ss_dssp             TTSBCS
T ss_pred             HHHHHH
Confidence            887653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.40  E-value=7.2e-07  Score=60.95  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=18.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHH
Q psy6968          23 PDLRLGIVGSLASGKSALVHR   43 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r   43 (93)
                      .+.|++++|..++||||++.+
T Consensus         6 ~~~klLlLG~geSGKSTi~KQ   26 (327)
T 3ohm_A            6 RELKLLLLGTGESGKSTFIKQ   26 (327)
T ss_dssp             CEEEEEEECSTTSSHHHHHHH
T ss_pred             ccceEEEEcCCCccHHHHHHH
Confidence            458999999999999999864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.40  E-value=5.1e-07  Score=62.85  Aligned_cols=63  Identities=16%  Similarity=0.177  Sum_probs=38.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh---CCCCCCCCC--Ccc-ee-EEEEEE-------------C--Ce----EEEEEEE
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT---GAFLQEESP--EGG-RF-KKEVVI-------------D--GH----SHLLLIR   76 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~---~~f~~~~~~--t~~-~~-~~~~~~-------------~--g~----~i~~~i~   76 (93)
                      ...+++++|..++|||||+.++..   +.+.++..+  |.+ .| ...+..             +  +.    ...+.+|
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            458999999999999999988773   344444444  422 23 222211             1  21    3689999


Q ss_pred             ecCCCCCCC
Q psy6968          77 DEGVPPELQ   85 (93)
Q Consensus        77 d~~g~~~~~   85 (93)
                      ||+|+++|.
T Consensus        87 DtPGh~~f~   95 (408)
T 1s0u_A           87 DSPGHETLM   95 (408)
T ss_dssp             ECSSHHHHH
T ss_pred             ECCCHHHHH
Confidence            999998763

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.39  E-value=4e-07  Score=64.43  Aligned_cols=25  Identities=20%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ...+++++|..++|||||+.+++..
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~   30 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYK   30 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.39  E-value=4e-07  Score=62.31  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=23.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      -+|++||+.|||||||++++++..|.
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~l   60 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFL   60 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcC
Confidence            39999999999999999999887763

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.39  E-value=2.6e-07  Score=68.09  Aligned_cols=61  Identities=15%  Similarity=0.152  Sum_probs=39.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-------------CCCC---Ccc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-------------EESP---EGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-------------~~~~---t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .+++++|.+|+|||||+.+++......             .+.+   ..+ .+ .+...+....+.+++|||+|+++|.
T Consensus        10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~   88 (665)
T 2dy1_A           10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV   88 (665)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred             cEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence            899999999999999999988433210             0111   001 12 2233333335788999999999874

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.39  E-value=2.2e-07  Score=59.70  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=21.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ++-++++++.+.+|   ..++++|++|||||||+ +.+.+.
T Consensus        10 ~~~l~~isl~i~~G---~~~~lvGpsGsGKSTLl-~~L~g~   46 (218)
T 1z6g_A           10 HSSGLVPRGSMNNI---YPLVICGPSGVGKGTLI-KKLLNE   46 (218)
T ss_dssp             ------------CC---CCEEEECSTTSSHHHHH-HHHHHH
T ss_pred             cccccCCceecCCC---CEEEEECCCCCCHHHHH-HHHHhh
Confidence            45588999999999   89999999999999999 555544

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.39  E-value=5.3e-09  Score=66.68  Aligned_cols=33  Identities=15%  Similarity=0.288  Sum_probs=27.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPE   56 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t   56 (93)
                      ..+++++|+.|||||||+.+++...|...+.++
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~   70 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIAC   70 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEE
Confidence            389999999999999999999988765544443

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.37  E-value=5.2e-07  Score=62.68  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=41.0

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhC--------CCCCC--CCC-----Ccc-ee-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTG--------AFLQE--ESP-----EGG-RF-KKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~--------~f~~~--~~~-----t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ....+++++|..++|||||+.+++..        .|...  .+.     ..+ .. ...+.++.....+.+|||+|+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            44589999999999999999998862        22211  000     011 01 123334434467789999999987


Q ss_pred             C
Q psy6968          85 Q   85 (93)
Q Consensus        85 ~   85 (93)
                      .
T Consensus        89 ~   89 (405)
T 2c78_A           89 I   89 (405)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.35  E-value=1.2e-07  Score=66.63  Aligned_cols=25  Identities=40%  Similarity=0.711  Sum_probs=22.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ...+++++|..++|||||+.+++..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4589999999999999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.35  E-value=3.5e-08  Score=70.82  Aligned_cols=62  Identities=15%  Similarity=0.208  Sum_probs=43.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----cceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+++++|..++|||||+.++....+.....+.    .+.+  .+..++.  .+.+|||+|+++|..++..
T Consensus         5 ~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~--~v~~~~~--~i~~iDTPGhe~f~~~~~~   70 (501)
T 1zo1_I            5 PVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY--HVETENG--MITFLDTPGHAAFTSMRAR   70 (501)
T ss_dssp             CCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC--CCCTTSS--CCCEECCCTTTCCTTSBCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE--EEEECCE--EEEEEECCCcHHHHHHHHH
Confidence            78999999999999999998876554332221    1211  2334453  5789999999999877643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.34  E-value=4.9e-07  Score=69.22  Aligned_cols=48  Identities=29%  Similarity=0.497  Sum_probs=40.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDG   68 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g   68 (93)
                      .+++++++++.+|   ..++++|++|+|||||+ +.+.|.    ..|+.|    ++.+++
T Consensus       687 ~iL~dVSl~I~~G---eivaIiGpNGSGKSTLL-klLaGl----l~P~sG----~I~~~~  734 (986)
T 2iw3_A          687 PQITDINFQCSLS---SRIAVIGPNGAGKSTLI-NVLTGE----LLPTSG----EVYTHE  734 (986)
T ss_dssp             CSEEEEEEEEETT---CEEEECSCCCHHHHHHH-HHHTTS----SCCSEE----EEEECT
T ss_pred             eeeeccEEEEcCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCce----EEEEcC
Confidence            5689999999999   99999999999999999 888887    467777    566654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.33  E-value=9.1e-07  Score=62.18  Aligned_cols=69  Identities=16%  Similarity=0.051  Sum_probs=44.3

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC-CCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF-LQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ..++++.+..+   ..+++||++|||||||+..++.... ...++.+ .......+.+++ ...+.+||+.|..+
T Consensus       147 ~~~i~lelk~g---~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~  217 (416)
T 1udx_A          147 KRRLRLELMLI---ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIE  217 (416)
T ss_dssp             EEEEEEEECCS---CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCC
T ss_pred             EeeeeeEEcCC---CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEecccccc
Confidence            46777888888   8999999999999999966554321 1112211 111122455554 24578999999754

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.33  E-value=1.7e-07  Score=68.25  Aligned_cols=25  Identities=36%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ....+++++|..++|||||+.+++.
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHH
Confidence            4457899999999999999999863

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.33  E-value=7.4e-07  Score=62.00  Aligned_cols=63  Identities=21%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh---CCCCCCCCC--Ccc-eeE-EEEEE-------------C--Ce----EEEEEEE
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT---GAFLQEESP--EGG-RFK-KEVVI-------------D--GH----SHLLLIR   76 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~---~~f~~~~~~--t~~-~~~-~~~~~-------------~--g~----~i~~~i~   76 (93)
                      ...+++++|..++|||||+.+++.   +.+.++..+  |.+ .|. ..+..             +  +.    ...+.+|
T Consensus         9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   88 (410)
T 1kk1_A            9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   88 (410)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence            458999999999999999988873   344444444  422 232 22211             1  21    3689999


Q ss_pred             ecCCCCCCC
Q psy6968          77 DEGVPPELQ   85 (93)
Q Consensus        77 d~~g~~~~~   85 (93)
                      ||.|+++|.
T Consensus        89 DtPGh~~f~   97 (410)
T 1kk1_A           89 DAPGHEALM   97 (410)
T ss_dssp             ECSSHHHHH
T ss_pred             ECCChHHHH
Confidence            999988763

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.29  E-value=1.3e-06  Score=62.99  Aligned_cols=21  Identities=19%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++++|..++|||||+.+++
T Consensus        14 r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           14 RTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            689999999999999999996

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.28  E-value=5.9e-07  Score=55.56  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=24.3

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVH   42 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~   42 (93)
                      ++++.+.++   ..++++|++|||||||+.
T Consensus         1 ~vsl~i~~g---ei~~l~G~nGsGKSTl~~   27 (171)
T 4gp7_A            1 SMKLTIPEL---SLVVLIGSSGSGKSTFAK   27 (171)
T ss_dssp             CEEEEEESS---EEEEEECCTTSCHHHHHH
T ss_pred             CccccCCCC---EEEEEECCCCCCHHHHHH
Confidence            367888899   999999999999999995

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.28  E-value=3.6e-07  Score=63.21  Aligned_cols=52  Identities=15%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      +++++|..++|||||+.+++      +...|.+.-...+..++  ..+.+|||+|+++|.
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~   74 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTL   74 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCH
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHH
Confidence            89999999999999998876      12233221011223333  468999999999984

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.28  E-value=1.1e-06  Score=61.54  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=22.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ...+++++|..++|||||+.+++.+.
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~   48 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDS   48 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhc
Confidence            34899999999999999999998653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.28  E-value=1.1e-07  Score=66.82  Aligned_cols=39  Identities=21%  Similarity=0.376  Sum_probs=29.5

Q ss_pred             ceeeeceeeeCCCC-----------------CeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968           9 TFVTSHEFTLARDV-----------------PDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus         9 ~~~~~~~~~~~~~~-----------------~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++++.+.+|.                 ....++++|++|+|||||+ +.+.+.
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl-n~L~Gl   92 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGI   92 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH-HHHHTC
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH-HHHhCC
Confidence            45677788887772                 1128999999999999999 556665

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.27  E-value=5.4e-07  Score=64.95  Aligned_cols=22  Identities=14%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++|..|+|||||+.+++.
T Consensus        14 ~~I~IiG~~~aGKTTL~~~Ll~   35 (529)
T 2h5e_A           14 RTFAIISHPDAGKTTITEKVLL   35 (529)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHh
Confidence            8999999999999999999986

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.27  E-value=5.9e-07  Score=63.69  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.9

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ....+++++|..++|||||+.+++.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            3458999999999999999999874

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.26  E-value=1.7e-06  Score=60.36  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC-CC-CCCCC-cceeEEEEEECCe-------------E--EEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF-LQ-EESPE-GGRFKKEVVIDGH-------------S--HLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f-~~-~~~~t-~~~~~~~~~~~g~-------------~--i~~~i~d~~g~~~   83 (93)
                      .++++||++|+|||||++.+++... .. .++.+ .......+.+++.             .  ..+.+||++|...
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            8999999999999999977776543 22 12211 1111236667652             1  3688999998543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.26  E-value=4e-07  Score=63.21  Aligned_cols=62  Identities=15%  Similarity=0.167  Sum_probs=38.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC-------CCCCC--CCCC-----cc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG-------AFLQE--ESPE-----GG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~-------~f~~~--~~~t-----~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .++++++|..++|||||+.+++..       .|...  .+..     .+ .. ...+.++.....+.+|||+|+++|.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~   80 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence            489999999999999999998863       12110  0000     11 00 0112233334578899999998763

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.25  E-value=2.4e-06  Score=64.49  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=40.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC------------CCCC----CCC--CCcc-ee-EEEEE------------ECCeEE
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG------------AFLQ----EES--PEGG-RF-KKEVV------------IDGHSH   71 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~------------~f~~----~~~--~t~~-~~-~~~~~------------~~g~~i   71 (93)
                      ..+++++|..++|||||+.+++..            .+.+    ++.  .|.. .. .....            .++..+
T Consensus        19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~   98 (842)
T 1n0u_A           19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   98 (842)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence            479999999999999999999863            2211    011  1211 11 11111            245578


Q ss_pred             EEEEEecCCCCCCCC
Q psy6968          72 LLLIRDEGVPPELQP   86 (93)
Q Consensus        72 ~~~i~d~~g~~~~~~   86 (93)
                      .+++|||+|+++|..
T Consensus        99 ~i~liDTPG~~df~~  113 (842)
T 1n0u_A           99 LINLIDSPGHVDFSS  113 (842)
T ss_dssp             EEEEECCCCCCSSCH
T ss_pred             eEEEEECcCchhhHH
Confidence            999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.24  E-value=1.6e-06  Score=62.61  Aligned_cols=50  Identities=18%  Similarity=0.289  Sum_probs=37.5

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      +...++.+.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.+++..+.
T Consensus       284 l~~~~~~i~~G---ei~~i~G~nGsGKSTLl-~~l~Gl----~~p~~G----~i~~~~~~i~  333 (538)
T 3ozx_A          284 LVVDNGEAKEG---EIIGILGPNGIGKTTFA-RILVGE----ITADEG----SVTPEKQILS  333 (538)
T ss_dssp             EEECCEEEETT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSBC----CEESSCCCEE
T ss_pred             EEeccceECCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCc----EEEECCeeeE
Confidence            34445567788   89999999999999999 888887    467777    5556665443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.22  E-value=1.2e-06  Score=64.04  Aligned_cols=61  Identities=18%  Similarity=0.246  Sum_probs=34.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC--CCCC-----CCCCC------cc-ee-EE--EEEE---CCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG--AFLQ-----EESPE------GG-RF-KK--EVVI---DGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~--~f~~-----~~~~t------~~-~~-~~--~~~~---~g~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|..++|||||+.+++..  .+..     .+..+      .+ .. ..  .+.+   ++..+.+++|||+|+++|
T Consensus         5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF   84 (599)
T 3cb4_D            5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF   84 (599)
T ss_dssp             EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence            68999999999999999999862  2211     11111      11 11 11  2222   567789999999999987


Q ss_pred             C
Q psy6968          85 Q   85 (93)
Q Consensus        85 ~   85 (93)
                      .
T Consensus        85 ~   85 (599)
T 3cb4_D           85 S   85 (599)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.21  E-value=5.9e-07  Score=63.99  Aligned_cols=60  Identities=17%  Similarity=0.201  Sum_probs=38.0

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCC-------CCCCCCC--CcceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGA-------FLQEESP--EGGRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~-------f~~~~~~--t~~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      ...+++++|..++|||||+.+++...       +..+..+  |.+.-...+.+++  ..+.+|||+|+++|
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~   86 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADL   86 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHH
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHH
Confidence            45899999999999999998888655       2222221  2111011234455  57889999998876

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.21  E-value=6.6e-07  Score=59.21  Aligned_cols=56  Identities=18%  Similarity=0.096  Sum_probs=34.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-e-EEEEEECCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-F-KKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|.+|||||||++++....... ..++.+. . ...+.++.   .+.+|||+|....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence            589999999999999998888665422 1222221 0 11222222   5789999996643

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.20  E-value=1.3e-06  Score=56.80  Aligned_cols=36  Identities=31%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ...+++++++.+.++   ..++++|++|+||||++..+.
T Consensus        11 ~~~~l~~isl~i~~g---~iigI~G~~GsGKSTl~k~L~   46 (245)
T 2jeo_A           11 VDLGTENLYFQSMRP---FLIGVSGGTASGKSTVCEKIM   46 (245)
T ss_dssp             ------------CCS---EEEEEECSTTSSHHHHHHHHH
T ss_pred             CceeecceeccCCCC---EEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999   999999999999999994443

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=98.20  E-value=7.1e-07  Score=61.31  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHH
Q psy6968          23 PDLRLGIVGSLASGKSALVHR   43 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r   43 (93)
                      .++|++++|..++||||++.+
T Consensus         4 ~~~klLLLG~geSGKSTi~KQ   24 (340)
T 4fid_A            4 KPITVMLLGSGESGKSTIAKQ   24 (340)
T ss_dssp             CCEEEEEEECTTSSHHHHHHH
T ss_pred             CcceEEEECCCCCcHHHHHHH
Confidence            458999999999999999753

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.19  E-value=3e-06  Score=62.73  Aligned_cols=60  Identities=17%  Similarity=0.184  Sum_probs=37.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh--CCCCC------------------CCCCCcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT--GAFLQ------------------EESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~--~~f~~------------------~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ..+++++|..|+|||||+.+++.  +.+..                  +..+|...-...+.+++  ..+.+|||.|+++
T Consensus        12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d   89 (691)
T 1dar_A           12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGHVD   89 (691)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSSTT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCccc
Confidence            37999999999999999999984  22211                  11112111111233333  6789999999988


Q ss_pred             CC
Q psy6968          84 LQ   85 (93)
Q Consensus        84 ~~   85 (93)
                      |.
T Consensus        90 f~   91 (691)
T 1dar_A           90 FT   91 (691)
T ss_dssp             CH
T ss_pred             hH
Confidence            74

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.19  E-value=5.3e-06  Score=61.54  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=39.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh--CCCCCC------------------CCCCcceeEEEEEEC-----CeEEEEEEEecC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT--GAFLQE------------------ESPEGGRFKKEVVID-----GHSHLLLIRDEG   79 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~--~~f~~~------------------~~~t~~~~~~~~~~~-----g~~i~~~i~d~~   79 (93)
                      .+++++|..|+|||||+.+++.  +.+...                  ...|...-...+.++     +....+.+|||+
T Consensus        11 ~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTP   90 (704)
T 2rdo_7           11 RNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTP   90 (704)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCC
Confidence            7999999999999999999974  222210                  001110001122232     345789999999


Q ss_pred             CCCCCCC
Q psy6968          80 VPPELQP   86 (93)
Q Consensus        80 g~~~~~~   86 (93)
                      |+++|..
T Consensus        91 G~~df~~   97 (704)
T 2rdo_7           91 GHVDFTI   97 (704)
T ss_pred             CccchHH
Confidence            9998853

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.17  E-value=4.4e-07  Score=60.30  Aligned_cols=23  Identities=35%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++++++|++|+|||||++.+++
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            37899999999999999955443

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.16  E-value=2.8e-06  Score=56.63  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=23.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .+++++|+.++|||||++++++..+
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            6899999999999999999998775

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.15  E-value=6.6e-07  Score=61.58  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=31.9

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      +++++.+.++   ..++++|++|+|||||+ +.+.+.    ++|+.+
T Consensus       166 ~~l~~~i~~G---~~i~ivG~sGsGKSTll-~~l~~~----~~~~~g  204 (361)
T 2gza_A          166 SFLRRAVQLE---RVIVVAGETGSGKTTLM-KALMQE----IPFDQR  204 (361)
T ss_dssp             HHHHHHHHTT---CCEEEEESSSSCHHHHH-HHHHTT----SCTTSC
T ss_pred             HHHHHHHhcC---CEEEEECCCCCCHHHHH-HHHHhc----CCCCce
Confidence            6778888888   89999999999999999 666666    445555

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.15  E-value=2.6e-06  Score=61.42  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=30.5

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .+.+++ .+.+|   ..++++|++|+|||||+ +.+.+..
T Consensus        37 ~l~~vs-~i~~G---e~~~LvG~NGaGKSTLl-k~l~Gl~   71 (538)
T 1yqt_A           37 VLYRLP-VVKEG---MVVGIVGPNGTGKSTAV-KILAGQL   71 (538)
T ss_dssp             EEECCC-CCCTT---SEEEEECCTTSSHHHHH-HHHHTSS
T ss_pred             cccCcC-cCCCC---CEEEEECCCCCCHHHHH-HHHhCCC
Confidence            567777 78889   99999999999999999 8888863

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.12  E-value=9.2e-06  Score=60.16  Aligned_cols=61  Identities=16%  Similarity=0.193  Sum_probs=38.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh--CCCCCC-----------C-------CCCcceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT--GAFLQE-----------E-------SPEGGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~--~~f~~~-----------~-------~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      ..+++++|..++|||||+.+++.  +.+...           +       ..|...-...+.+++  ..+.+|||+|+.+
T Consensus        10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~d   87 (693)
T 2xex_A           10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHVD   87 (693)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCSS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCcc
Confidence            47999999999999999999985  333210           0       001000012234444  5788999999998


Q ss_pred             CCC
Q psy6968          84 LQP   86 (93)
Q Consensus        84 ~~~   86 (93)
                      |..
T Consensus        88 f~~   90 (693)
T 2xex_A           88 FTV   90 (693)
T ss_dssp             CCH
T ss_pred             hHH
Confidence            753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.11  E-value=1e-06  Score=56.57  Aligned_cols=39  Identities=8%  Similarity=0.010  Sum_probs=20.2

Q ss_pred             CCcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh-CC
Q psy6968           6 NSDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT-GA   48 (93)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~-~~   48 (93)
                      +..+...+.++.+.+|   ..++++|++||||||++ +.+. +.
T Consensus        12 ~~~~~~~~~sl~v~~G---~ii~l~Gp~GsGKSTl~-~~L~~~~   51 (231)
T 3lnc_A           12 LEAQTQGPGSMLKSVG---VILVLSSPSGCGKTTVA-NKLLEKQ   51 (231)
T ss_dssp             ----------CCEECC---CEEEEECSCC----CHH-HHHHC--
T ss_pred             hhhcccCCCCcccCCC---CEEEEECCCCCCHHHHH-HHHHhcC
Confidence            4456678889999999   89999999999999999 5555 44

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.11  E-value=2.5e-06  Score=62.42  Aligned_cols=61  Identities=21%  Similarity=0.309  Sum_probs=36.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh--CCCCCC-----CCCC------cc-ee---EEEEEE---CCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT--GAFLQE-----ESPE------GG-RF---KKEVVI---DGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~--~~f~~~-----~~~t------~~-~~---~~~~~~---~g~~i~~~i~d~~g~~~~   84 (93)
                      .+++++|..++|||||+.+++.  +.+...     +..+      .+ ..   ...+.+   ++..+.+.+|||+|+++|
T Consensus         7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF   86 (600)
T 2ywe_A            7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF   86 (600)
T ss_dssp             EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence            6899999999999999999975  222110     1000      00 00   011222   566789999999999987


Q ss_pred             C
Q psy6968          85 Q   85 (93)
Q Consensus        85 ~   85 (93)
                      .
T Consensus        87 ~   87 (600)
T 2ywe_A           87 S   87 (600)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.09  E-value=1.8e-06  Score=58.99  Aligned_cols=26  Identities=31%  Similarity=0.657  Sum_probs=23.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      .+|+++|+.+||||||++++++..|.
T Consensus        32 ~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            69999999999999999999887764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=98.07  E-value=1.9e-06  Score=59.12  Aligned_cols=56  Identities=18%  Similarity=0.069  Sum_probs=36.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC-CCCC-CCcceeEEEEEECCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL-QEES-PEGGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~-~t~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      .+|+++|.++||||||+.+++...+. ..|. .|.......+.+++. ..+.+|||+|+
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~  216 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGL  216 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCC
Confidence            47899999999999999888765432 1222 222221224556542 36789999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.07  E-value=7.7e-07  Score=60.30  Aligned_cols=35  Identities=17%  Similarity=0.185  Sum_probs=29.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .+++++++.+.+|   ..++|+|++|+|||||+ +.+.+
T Consensus       114 ~vL~~vsl~i~~G---e~vaIvGpsGsGKSTLl-~lL~g  148 (305)
T 2v9p_A          114 NALKLWLKGIPKK---NCLAFIGPPNTGKSMLC-NSLIH  148 (305)
T ss_dssp             HHHHHHHHTCTTC---SEEEEECSSSSSHHHHH-HHHHH
T ss_pred             hhhccceEEecCC---CEEEEECCCCCcHHHHH-HHHhh
Confidence            3577889999999   99999999999999999 55543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.07  E-value=3.3e-06  Score=52.85  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=21.1

Q ss_pred             eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +.+.+|   ..++++|++||||||++ +.+.+.
T Consensus         2 ~~m~~g---~ii~l~Gp~GsGKSTl~-~~L~~~   30 (205)
T 3tr0_A            2 NAMNKA---NLFIISAPSGAGKTSLV-RALVKA   30 (205)
T ss_dssp             ---CCC---CEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CcCCCC---cEEEEECcCCCCHHHHH-HHHHhh
Confidence            345566   78999999999999999 555443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.05  E-value=5.8e-06  Score=59.65  Aligned_cols=40  Identities=28%  Similarity=0.534  Sum_probs=31.8

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      ++..++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|
T Consensus       302 l~~~~~~i~~G---e~~~i~G~NGsGKSTLl-k~l~Gl----~~p~~G  341 (538)
T 1yqt_A          302 LEVEPGEIKKG---EVIGIVGPNGIGKTTFV-KMLAGV----EEPTEG  341 (538)
T ss_dssp             EEECCEEEETT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSBC
T ss_pred             EEeCccccCCC---CEEEEECCCCCCHHHHH-HHHhCC----CCCCCe
Confidence            45555566788   89999999999999999 888876    456655

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.03  E-value=7.4e-07  Score=60.74  Aligned_cols=48  Identities=15%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      +++++++.+.++   ..++++|++|+|||||+ +.+.+.    +.|..+    .+.++|.
T Consensus       160 ~l~~l~~~i~~g---~~v~i~G~~GsGKTTll-~~l~g~----~~~~~g----~i~i~~~  207 (330)
T 2pt7_A          160 AISAIKDGIAIG---KNVIVCGGTGSGKTTYI-KSIMEF----IPKEER----IISIEDT  207 (330)
T ss_dssp             HHHHHHHHHHHT---CCEEEEESTTSCHHHHH-HHGGGG----SCTTSC----EEEEESS
T ss_pred             HHhhhhhhccCC---CEEEEECCCCCCHHHHH-HHHhCC----CcCCCc----EEEECCe
Confidence            456677777778   79999999999999999 777776    455666    5555543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.02  E-value=6.9e-06  Score=60.11  Aligned_cols=40  Identities=28%  Similarity=0.532  Sum_probs=31.9

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      ++..++.+.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|
T Consensus       372 l~~~~~~v~~G---ei~~i~G~NGsGKSTLl-k~l~Gl----~~p~~G  411 (607)
T 3bk7_A          372 LEVEPGEIRKG---EVIGIVGPNGIGKTTFV-KMLAGV----EEPTEG  411 (607)
T ss_dssp             EEECCEEEETT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSBS
T ss_pred             EEecccccCCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCce
Confidence            45555667788   89999999999999999 888886    456655

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.02  E-value=6.5e-06  Score=60.25  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .+.+++ .+.+|   ..++++|++|+|||||+ +.+.+..
T Consensus       107 ~l~~vs-~i~~G---e~~~LiG~NGsGKSTLl-kiL~Gll  141 (607)
T 3bk7_A          107 VLYRLP-IVKDG---MVVGIVGPNGTGKTTAV-KILAGQL  141 (607)
T ss_dssp             EEECCC-CCCTT---SEEEEECCTTSSHHHHH-HHHTTSS
T ss_pred             eeCCCC-CCCCC---CEEEEECCCCChHHHHH-HHHhCCC
Confidence            567777 77888   99999999999999999 8888863

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.00  E-value=9e-06  Score=54.27  Aligned_cols=55  Identities=22%  Similarity=0.201  Sum_probs=32.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce--eEEEEEECCeEEEEEEEecCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~--~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ..+++++|.+|||||||+++++...... ..+..+.  ....+.++.   .+.+|||+|--
T Consensus       120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          120 AIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            3799999999999999998887654211 1111110  011222332   57899999964

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.99  E-value=3.7e-06  Score=53.25  Aligned_cols=29  Identities=28%  Similarity=0.297  Sum_probs=21.9

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      ++.+|   ..++++|++|||||||+ +.+.+..
T Consensus        16 ~i~~G---ei~~l~GpnGsGKSTLl-~~l~gl~   44 (207)
T 1znw_A           16 PAAVG---RVVVLSGPSAVGKSTVV-RCLRERI   44 (207)
T ss_dssp             ---CC---CEEEEECSTTSSHHHHH-HHHHHHS
T ss_pred             CCCCC---CEEEEECCCCCCHHHHH-HHHHhhC
Confidence            56777   89999999999999999 6665543

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.97  E-value=1.7e-06  Score=58.40  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++...++   ..++++|++||||||++ +.+.+.
T Consensus        92 ~l~~~~~~g---~vi~lvG~nGsGKTTll-~~Lag~  123 (302)
T 3b9q_A           92 ELQLGFRKP---AVIMIVGVNGGGKTTSL-GKLAHR  123 (302)
T ss_dssp             SCCCCSSSC---EEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             ccccccCCC---cEEEEEcCCCCCHHHHH-HHHHHH
Confidence            455556667   89999999999999999 545444

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.96  E-value=6.7e-06  Score=51.70  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=20.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ...+++++.+.++   ..++++|++||||||++..+.
T Consensus        13 ~~~~~~~~~~~~~---~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           13 LGTENLYFQSNAM---VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             -----------CC---CEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCceeEecCCC---CEEEEEcCCCCCHHHHHHHHH
Confidence            3467888888887   789999999999999995544

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.96  E-value=2.4e-06  Score=60.32  Aligned_cols=48  Identities=23%  Similarity=0.313  Sum_probs=36.2

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      ..++++ +++.+|   .+++++|++|||||||+ +.+.+.    ..|+.+    .+.++|+
T Consensus       146 ~vld~v-l~i~~G---q~~~IvG~sGsGKSTLl-~~Iag~----~~~~~G----~i~~~G~  193 (438)
T 2dpy_A          146 RAINAL-LTVGRG---QRMGLFAGSGVGKSVLL-GMMARY----TRADVI----VVGLIGE  193 (438)
T ss_dssp             HHHHHH-SCCBTT---CEEEEEECTTSSHHHHH-HHHHHH----SCCSEE----EEEEESC
T ss_pred             eEEeee-EEecCC---CEEEEECCCCCCHHHHH-HHHhcc----cCCCeE----EEEEece
Confidence            356778 889999   99999999999999999 666655    345555    4555554

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.95  E-value=2.7e-06  Score=60.86  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=27.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++++.+.+    ..++++|++|||||||+ +.+.+.
T Consensus        18 ~~l~~vsl~i~~----e~~~liG~nGsGKSTLl-~~l~Gl   52 (483)
T 3euj_A           18 NGFFARTFDFDE----LVTTLSGGNGAGKSTTM-AGFVTA   52 (483)
T ss_dssp             TTEEEEEEECCS----SEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             ccccceEEEEcc----ceEEEECCCCCcHHHHH-HHHhcC
Confidence            347788887754    57899999999999999 666544

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=97.91  E-value=1.2e-05  Score=58.12  Aligned_cols=27  Identities=11%  Similarity=0.309  Sum_probs=24.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      ..+|+++|..|+|||||++++++..+.
T Consensus        65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           65 KPMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCccc
Confidence            479999999999999999999987763

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.90  E-value=7.9e-06  Score=51.58  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+|||||+..++
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~   25 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLF   25 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999995443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.89  E-value=1.1e-05  Score=61.98  Aligned_cols=38  Identities=29%  Similarity=0.515  Sum_probs=32.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..+++++++.+.+|   ..++++|++|+|||||+.-+.++.
T Consensus       448 ~~iL~~vsl~I~~G---e~v~LiGpNGsGKSTLLk~LagG~  485 (986)
T 2iw3_A          448 KILLNKTQLRLKRA---RRYGICGPNGCGKSTLMRAIANGQ  485 (986)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECSTTSSHHHHHHHHHHTC
T ss_pred             EEeEecceEEEcCC---CEEEEECCCCCCHHHHHHHHhCCC
Confidence            35689999999999   999999999999999994444454

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.89  E-value=1.1e-06  Score=58.11  Aligned_cols=34  Identities=21%  Similarity=0.073  Sum_probs=26.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..+++++  +.++   ..++++|++|+||||++ +.+.+.
T Consensus        15 ~vl~~i~--i~~g---~~v~i~Gp~GsGKSTll-~~l~g~   48 (261)
T 2eyu_A           15 DKVLELC--HRKM---GLILVTGPTGSGKSTTI-ASMIDY   48 (261)
T ss_dssp             THHHHGG--GCSS---EEEEEECSTTCSHHHHH-HHHHHH
T ss_pred             HHHHHHh--hCCC---CEEEEECCCCccHHHHH-HHHHHh
Confidence            3455666  6677   89999999999999999 555554

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=97.88  E-value=3.6e-06  Score=65.72  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=39.6

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhC-------CCCCC--CC-----CCcce-e-EEEEEECCeEEEEEEEecCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTG-------AFLQE--ES-----PEGGR-F-KKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~-------~f~~~--~~-----~t~~~-~-~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      +.+...+++++|..++|||||+.+++..       .|...  .+     .+.+. . ...+.++.....+.+|||+|+++
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            3445689999999999999999998763       11110  01     11110 0 01123334446789999999988


Q ss_pred             CC
Q psy6968          84 LQ   85 (93)
Q Consensus        84 ~~   85 (93)
                      |.
T Consensus       372 F~  373 (1289)
T 3avx_A          372 YV  373 (1289)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.88  E-value=3.9e-05  Score=53.28  Aligned_cols=55  Identities=18%  Similarity=0.088  Sum_probs=37.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC-CCCCCCCC-cceeEEEEEECCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA-FLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~-f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      ..|++||.++||||||++.+.... -..+|+-+ .......+.+++.  .+++.||+|-
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl  129 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGI  129 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGG
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCc
Confidence            589999999999999997766533 12233222 3333446777775  5678999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.87  E-value=1.2e-05  Score=49.79  Aligned_cols=27  Identities=22%  Similarity=0.161  Sum_probs=21.6

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +.++   ..++++|++|+||||++ +.+.+.
T Consensus         6 i~~g---~~i~l~G~~GsGKSTl~-~~La~~   32 (191)
T 1zp6_A            6 DLGG---NILLLSGHPGSGKSTIA-EALANL   32 (191)
T ss_dssp             CCTT---EEEEEEECTTSCHHHHH-HHHHTC
T ss_pred             CCCC---eEEEEECCCCCCHHHHH-HHHHhc
Confidence            3455   78999999999999999 555554

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.87  E-value=8.5e-06  Score=59.89  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHH
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALV   41 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~   41 (93)
                      ...++++++++.+|   ..++++|++|||||||+
T Consensus        31 ~~~L~~vsl~i~~G---e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           31 AHNLKNIDVEIPRG---KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             STTCCSEEEEEETT---SEEEEECSTTSSHHHHH
T ss_pred             ccceeccEEEECCC---CEEEEECCCCCCHHHHh
Confidence            45689999999999   99999999999999996

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.86  E-value=1.2e-05  Score=51.80  Aligned_cols=29  Identities=17%  Similarity=0.243  Sum_probs=20.9

Q ss_pred             eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      -.+++|   ..++++|++|||||||+. .+.+.
T Consensus        11 ~~~~~G---~ii~l~GpsGsGKSTLlk-~L~g~   39 (219)
T 1s96_A           11 HHMAQG---TLYIVSAPSGAGKSSLIQ-ALLKT   39 (219)
T ss_dssp             ----CC---CEEEEECCTTSCHHHHHH-HHHHH
T ss_pred             ccCCCC---cEEEEECCCCCCHHHHHH-HHhcc
Confidence            346677   899999999999999994 45444

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.86  E-value=4e-06  Score=59.16  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=27.6

Q ss_pred             eeeceeeeCCCCCeee--EEEECCCCCCHHHHHHHHHhCC
Q psy6968          11 VTSHEFTLARDVPDLR--LGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~k--v~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ++++++.+.+|   ..  ++|+|++|+|||||++. +.+.
T Consensus        30 L~~vsl~i~~G---ei~~vaLvG~nGaGKSTLln~-L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQG---FCFNILCVGETGLGKSTLMDT-LFNT   65 (427)
T ss_dssp             HHHHHHSCC-C---CEEEEEEECSTTSSSHHHHHH-HHTS
T ss_pred             cCCCceEecCC---CeeEEEEECCCCCCHHHHHHH-HhCc
Confidence            77888888888   66  99999999999999954 4444

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.86  E-value=4.2e-06  Score=57.47  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=28.7

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .++++ +++.+|   .+++++|++|+|||||+ +.+.+.
T Consensus        61 ald~l-l~i~~G---q~~gIiG~nGaGKTTLl-~~I~g~   94 (347)
T 2obl_A           61 AIDGL-LTCGIG---QRIGIFAGSGVGKSTLL-GMICNG   94 (347)
T ss_dssp             HHHHH-SCEETT---CEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             EEEee-eeecCC---CEEEEECCCCCCHHHHH-HHHhcC
Confidence            46677 888999   99999999999999999 555554

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.85  E-value=3.6e-06  Score=58.13  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+++.+.++   ..++++|++||||||++ +.+.+.
T Consensus       149 ~l~l~~~~g---~vi~lvG~nGsGKTTll-~~Lag~  180 (359)
T 2og2_A          149 ELQLGFRKP---AVIMIVGVNGGGKTTSL-GKLAHR  180 (359)
T ss_dssp             SCCCCSSSS---EEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CcceecCCC---eEEEEEcCCCChHHHHH-HHHHhh
Confidence            455556667   89999999999999999 555544

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.80  E-value=2e-05  Score=48.83  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++|||||||+..++.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6789999999999999965544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.80  E-value=1.7e-05  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=18.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +++++|++|+|||||+ +.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl-~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLV-KKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHH
Confidence            6899999999999999 555544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.80  E-value=6.9e-06  Score=59.00  Aligned_cols=33  Identities=12%  Similarity=0.115  Sum_probs=26.4

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +++++.+.++   ..++++|++||||||++ +.+.+.
T Consensus       284 ~~Isl~i~~G---eVI~LVGpNGSGKTTLl-~~LAgl  316 (503)
T 2yhs_A          284 EPLNVEGKAP---FVILMVGVNGVGKTTTI-GKLARQ  316 (503)
T ss_dssp             CCCCCCSCTT---EEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCceeeccCC---eEEEEECCCcccHHHHH-HHHHHH
Confidence            4567777777   89999999999999999 445444

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=97.79  E-value=3e-05  Score=57.51  Aligned_cols=25  Identities=24%  Similarity=0.558  Sum_probs=22.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      ++|+++|+.++|||||++.+++..+
T Consensus        70 ~~V~VvG~~naGKSSLlNaLlg~~~   94 (695)
T 2j69_A           70 FRLLVLGDMKRGKSTFLNALIGENL   94 (695)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            8999999999999999999987664

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.78  E-value=1.3e-05  Score=58.86  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=28.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVH   42 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~   42 (93)
                      ..++++++++.+|   ..++++|++|||||||++
T Consensus       336 ~~L~~vsl~I~~G---e~vaIiGpnGsGKSTLl~  366 (670)
T 3ux8_A          336 HNLKNVSVKIPLG---TFVAVTGVSGSGKSTLVN  366 (670)
T ss_dssp             TTCCSEEEEEETT---SEEEEECSTTSSHHHHHT
T ss_pred             cccccceeEecCC---CEEEEEeeCCCCHHHHHH
Confidence            4589999999999   999999999999999983

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.78  E-value=1.7e-05  Score=49.49  Aligned_cols=28  Identities=14%  Similarity=0.154  Sum_probs=21.4

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      +.++   ..++++|++||||||++ +.+.+.+
T Consensus         3 i~~g---~~i~l~G~~GsGKSTl~-~~L~~~~   30 (207)
T 2j41_A            3 NEKG---LLIVLSGPSGVGKGTVR-KRIFEDP   30 (207)
T ss_dssp             -CCC---CEEEEECSTTSCHHHHH-HHHHHCT
T ss_pred             CCCC---CEEEEECCCCCCHHHHH-HHHHHhh
Confidence            3456   78999999999999999 5554443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.75  E-value=3.2e-05  Score=55.90  Aligned_cols=24  Identities=25%  Similarity=0.628  Sum_probs=21.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      ..++++|+||+|||||+ +.+.+..
T Consensus        26 ei~gLiGpNGaGKSTLl-kiL~Gl~   49 (538)
T 3ozx_A           26 TILGVLGKNGVGKTTVL-KILAGEI   49 (538)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHTTSS
T ss_pred             CEEEEECCCCCcHHHHH-HHHhcCC
Confidence            88999999999999999 8888763

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.74  E-value=1.6e-05  Score=58.02  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=24.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCC-CcceeEEEEEECCeEE
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSH   71 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-t~~~~~~~~~~~g~~i   71 (93)
                      .++|+|++|||||||+ +.+.|.+    .| +.|    .++++|..+
T Consensus        47 ~iaIvG~nGsGKSTLL-~~I~Gl~----~P~~sG----~vt~~g~~i   84 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVL-EALSGVA----LPRGSG----IVTRCPLVL   84 (608)
T ss_dssp             CEECCCCTTSCHHHHH-HHHHSCC---------------CCCSCEEE
T ss_pred             eEEEECCCCChHHHHH-HHHhCCC----CCCCCC----eEEEcCEEE
Confidence            5999999999999999 7777763    35 455    556666554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.74  E-value=1e-05  Score=55.18  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=28.8

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++++++.+.++   ..++++|++|+|||||+..++
T Consensus        43 ~~l~~i~~~~~~g---~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           43 DLIDAVLPQTGRA---IRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             HHHHHHGGGCCCS---EEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHhCCcccCCC---eEEEEECCCCCCHHHHHHHHH
Confidence            3467778888888   999999999999999996665

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.73  E-value=2.9e-05  Score=49.56  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++|||||||+..++.
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECcCCCCHHHHHHHHHh
Confidence            6889999999999999966654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.73  E-value=3.5e-05  Score=56.47  Aligned_cols=44  Identities=20%  Similarity=0.366  Sum_probs=31.6

Q ss_pred             eeeeceeeeCCCCC--eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc
Q psy6968          10 FVTSHEFTLARDVP--DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG   58 (93)
Q Consensus        10 ~~~~~~~~~~~~~~--~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~   58 (93)
                      .+.++++.+.++..  -..++++|++|+|||||+ +.+.+.    ..|+.|
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~Gl----~~p~~G  407 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAGA----LKPDEG  407 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHTS----SCCSBC
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHH-HHHhcC----CCCCCC
Confidence            34567777766611  145899999999999999 888877    345544

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.71  E-value=3.5e-05  Score=56.43  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=24.1

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      +.+|   ..++++|++|+|||||+ +.+.+..
T Consensus       100 ~~~G---ei~~LvGpNGaGKSTLL-kiL~Gll  127 (608)
T 3j16_B          100 PRPG---QVLGLVGTNGIGKSTAL-KILAGKQ  127 (608)
T ss_dssp             CCTT---SEEEEECCTTSSHHHHH-HHHHTSS
T ss_pred             CCCC---CEEEEECCCCChHHHHH-HHHhcCC
Confidence            4567   89999999999999999 8888763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.70  E-value=1.7e-05  Score=53.19  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|||||||+ +.+.+.
T Consensus       170 eiv~l~G~sG~GKSTll-~~l~g~  192 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLL-NAINPG  192 (301)
T ss_dssp             SEEEEECSTTSSHHHHH-HHHSTT
T ss_pred             CeEEEECCCCCcHHHHH-HHhccc
Confidence            67899999999999999 666655

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.66  E-value=1.2e-05  Score=55.03  Aligned_cols=32  Identities=25%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             eceeeeCC--CCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          13 SHEFTLAR--DVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        13 ~~~~~~~~--~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+++.+.+  +   .+++++|++|+|||||+ +.+.+.
T Consensus       160 ~v~~~v~~~lg---~k~~IvG~nGsGKSTLl-k~L~gl  193 (365)
T 1lw7_A          160 FIPKEARPFFA---KTVAILGGESSGKSVLV-NKLAAV  193 (365)
T ss_dssp             GSCTTTGGGTC---EEEEEECCTTSHHHHHH-HHHHHH
T ss_pred             hCCHHHHHhhh---CeEEEECCCCCCHHHHH-HHHHHH
Confidence            34555555  5   89999999999999999 666665

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.66  E-value=3.5e-05  Score=48.73  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++|+|++|+|||||+ +.+.+.
T Consensus        23 ~~v~I~G~sGsGKSTl~-~~l~~~   45 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLS-NPLAAA   45 (208)
T ss_dssp             EEEEEECCTTSCTHHHH-HHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHH
Confidence            89999999999999999 555444

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.65  E-value=6.7e-06  Score=55.30  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++|+|++|+|||||+ +.+.+.
T Consensus        81 ~iigI~G~~GsGKSTl~-~~L~~~  103 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTA-RVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHHHH
Confidence            88999999999999999 555554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.64  E-value=1.3e-05  Score=56.96  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=27.3

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ++++.+.+|   ..++|+|++|||||||+ |.+.+.
T Consensus       130 ~vsl~i~~G---e~v~IvGpnGsGKSTLl-r~L~Gl  161 (460)
T 2npi_A          130 KIRMSNFEG---PRVVIVGGSQTGKTSLS-RTLCSY  161 (460)
T ss_dssp             HHHHHSSSC---CCEEEEESTTSSHHHHH-HHHHHT
T ss_pred             cCceEeCCC---CEEEEECCCCCCHHHHH-HHHhCc
Confidence            466777888   89999999999999999 777665

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.63  E-value=1.5e-05  Score=53.85  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++||||||++ +.+.+.
T Consensus       103 ~vi~lvG~nGsGKTTll-~~Lagl  125 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTI-AKLGRY  125 (304)
T ss_dssp             SEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             eEEEEECCCCCcHHHHH-HHHHHH
Confidence            78999999999999999 555544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.63  E-value=8.5e-06  Score=58.36  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             ceeeecee-eeCCCCCeeeEEEECCCCCCHHHHHHHH-HhCC
Q psy6968           9 TFVTSHEF-TLARDVPDLRLGIVGSLASGKSALVHRF-MTGA   48 (93)
Q Consensus         9 ~~~~~~~~-~~~~~~~~~kv~lvG~~g~GKtsl~~r~-~~~~   48 (93)
                      ..++++++ .+.+|   ..++++|++|+|||||+..+ +.+.
T Consensus        26 ~~Ld~i~~G~i~~G---e~~~l~G~nGsGKSTL~~~~ll~Gl   64 (525)
T 1tf7_A           26 EGFDDISHGGLPIG---RSTLVSGTSGTGKTLFSIQFLYNGI   64 (525)
T ss_dssp             TTHHHHTTSSEETT---SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hhHHHhcCCCCCCC---eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            34678888 88899   99999999999999999665 3443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.62  E-value=4.2e-05  Score=48.32  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=21.4

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.++   ..++++|++|+|||||+..++.
T Consensus        22 i~~G---~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           22 IETQ---AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EESS---EEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCC---cEEEEECCCCCCHHHHHHHHHH
Confidence            4566   7899999999999999955554

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.61  E-value=3.4e-05  Score=48.56  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|+||||++ +.+.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~-~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLA-QALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHHHH
Confidence            78999999999999999 555443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.59  E-value=6.1e-05  Score=47.70  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..++++|++|+||||++..++..
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            67899999999999999655543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.57  E-value=2.5e-05  Score=50.00  Aligned_cols=26  Identities=19%  Similarity=0.070  Sum_probs=21.9

Q ss_pred             CCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          19 ARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        19 ~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+|   ..++++|++|+|||||+ +.+.+.
T Consensus        20 ~~G---e~~~liG~nGsGKSTLl-~~l~Gl   45 (208)
T 3b85_A           20 DTN---TIVFGLGPAGSGKTYLA-MAKAVQ   45 (208)
T ss_dssp             HHC---SEEEEECCTTSSTTHHH-HHHHHH
T ss_pred             cCC---CEEEEECCCCCCHHHHH-HHHhcC
Confidence            456   78999999999999999 666664

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.56  E-value=1.8e-05  Score=56.90  Aligned_cols=34  Identities=18%  Similarity=0.198  Sum_probs=26.3

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +..+++.+.++   ..++++|++|+||||++ +.+.+.
T Consensus       250 l~~l~~~v~~g---~~i~I~GptGSGKTTlL-~aL~~~  283 (511)
T 2oap_1          250 LAYLWLAIEHK---FSAIVVGETASGKTTTL-NAIMMF  283 (511)
T ss_dssp             HHHHHHHHHTT---CCEEEEESTTSSHHHHH-HHHGGG
T ss_pred             HHHHHHHHhCC---CEEEEECCCCCCHHHHH-HHHHhh
Confidence            44555666677   67999999999999999 566655

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.55  E-value=4.9e-05  Score=51.41  Aligned_cols=27  Identities=30%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++   ..++|+|++|+|||||+ +.+.+.
T Consensus        87 ~~~g---~ivgI~G~sGsGKSTL~-~~L~gl  113 (312)
T 3aez_A           87 RPVP---FIIGVAGSVAVGKSTTA-RVLQAL  113 (312)
T ss_dssp             SCCC---EEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CCCC---EEEEEECCCCchHHHHH-HHHHhh
Confidence            4556   89999999999999999 556554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.54  E-value=5e-05  Score=46.76  Aligned_cols=21  Identities=33%  Similarity=0.363  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+|||+|+..++
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999995443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.53  E-value=3.3e-05  Score=51.17  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=28.3

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++++++.+.+|   ..++++|++|+|||||+..++.
T Consensus        24 ~Ld~i~~~l~~G---~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           24 GINDKTLGARGG---EVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             THHHHHCSBCTT---CEEEEEESTTSSHHHHHHHHHH
T ss_pred             HHHHHhcCCCCC---eEEEEEeCCCCCHHHHHHHHHH
Confidence            356677788888   8999999999999999965554

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.51  E-value=8.1e-05  Score=45.74  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=21.9

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+.++.+.++    ..+++|++|+|||||+ +.+
T Consensus        18 ~~~~~~~~~g----~~~i~G~NGsGKStll-~ai   46 (182)
T 3kta_A           18 KKVVIPFSKG----FTAIVGANGSGKSNIG-DAI   46 (182)
T ss_dssp             SCEEEECCSS----EEEEEECTTSSHHHHH-HHH
T ss_pred             ccEEEecCCC----cEEEECCCCCCHHHHH-HHH
Confidence            4456666555    5789999999999999 444

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.50  E-value=7.5e-05  Score=47.15  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=18.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -|+|+||+|+||+||+.+++..
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3789999999999999777653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.49  E-value=3e-05  Score=52.54  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=20.9

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +.++   ..++++|++|||||||++. +.+.
T Consensus       170 ~~~G---~~~~lvG~sG~GKSTLln~-L~g~  196 (307)
T 1t9h_A          170 HFQD---KTTVFAGQSGVGKSSLLNA-ISPE  196 (307)
T ss_dssp             GGTT---SEEEEEESHHHHHHHHHHH-HCC-
T ss_pred             hcCC---CEEEEECCCCCCHHHHHHH-hccc
Confidence            3456   7899999999999999954 5443

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.49  E-value=1.1e-05  Score=50.35  Aligned_cols=23  Identities=43%  Similarity=0.554  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|+|||||+ +.+.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~-~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLI-TRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHH-HHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHH
Confidence            46889999999999999 445444

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.47  E-value=9e-05  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+++++|++|+||||++. .+.+.
T Consensus         2 ~~i~i~G~nG~GKTTll~-~l~g~   24 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIH-KASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHH-HHHHH
T ss_pred             CEEEEECCCCChHHHHHH-HHHhh
Confidence            478999999999999994 44443

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.47  E-value=2.4e-05  Score=53.34  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++||||||++..++
T Consensus       130 ~vi~lvG~nGaGKTTll~~La  150 (328)
T 3e70_C          130 YVIMFVGFNGSGKTTTIAKLA  150 (328)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            899999999999999994444

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.46  E-value=0.00011  Score=46.20  Aligned_cols=26  Identities=27%  Similarity=0.472  Sum_probs=21.2

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.++   ..++++|++||||||++.++..
T Consensus         9 ~~~~---~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A            9 MARI---PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCC---CCEEEECCTTSCHHHHHHHHHH
T ss_pred             cccC---CEEEEECCCCCCHHHHHHHHHH
Confidence            4455   6889999999999999966654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.45  E-value=0.00012  Score=45.94  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..++++|++|+||||++..+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L   49 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGV   49 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999444

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.44  E-value=6.1e-05  Score=50.55  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|||||||++.++
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            678999999999999996655

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.44  E-value=2.2e-05  Score=51.68  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=27.4

Q ss_pred             ceeeeceeeeCC---CCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           9 TFVTSHEFTLAR---DVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         9 ~~~~~~~~~~~~---~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++++++.+.+   +   ..++++|.+||||||+...+.
T Consensus        33 ~~l~~~~~~i~~~l~g---~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           33 QILKKKAEEVKPYLNG---RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             HHHHHHHHTTHHHHTT---CCEEEECSTTSCHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcCC---CEEEEECCCCCCHHHHHHHHH
Confidence            356777777777   7   799999999999999994443

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.43  E-value=0.00015  Score=45.46  Aligned_cols=20  Identities=30%  Similarity=0.340  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..++++|++||||||++..+
T Consensus        26 ~~i~l~G~sGsGKSTl~~~L   45 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACAL   45 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999443

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.42  E-value=0.00016  Score=52.85  Aligned_cols=60  Identities=20%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCC-----CcceeEEEEEE-CCeEEEEEEEecCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP-----EGGRFKKEVVI-DGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~-----t~~~~~~~~~~-~g~~i~~~i~d~~g~~~   83 (93)
                      ...|+++|.+++|||||++++++....-....     |.+.+.....+ ......+.++||.|-..
T Consensus        38 ~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           38 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            47889999999999999988877542101211     12211111111 11224577899998553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.42  E-value=0.00011  Score=45.50  Aligned_cols=21  Identities=29%  Similarity=0.294  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+||||++..+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHh
Confidence            468899999999999995443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.41  E-value=0.00013  Score=44.30  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..++++|++||||||++ +.+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~-~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIG-RQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHH-HHHHH
T ss_pred             CeEEEECCCCCCHHHHH-HHHHH
Confidence            57999999999999999 55544

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.41  E-value=0.00012  Score=47.30  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++|+||||++ +.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~-k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVC-QRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHH
T ss_pred             cEEEEECCCCCCHHHHH-HHHH
Confidence            68999999999999999 4454

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.40  E-value=0.00015  Score=44.91  Aligned_cols=29  Identities=14%  Similarity=0.362  Sum_probs=21.4

Q ss_pred             eeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          15 EFTLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        15 ~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++...++   ..++++|.+||||||+...+..
T Consensus         4 ~~~~~~~---~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            4 SMEQPKG---INILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             --CCCSS---CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCCCC---CEEEEECCCCCCHHHHHHHHHH
Confidence            4444555   6899999999999999955544

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.37  E-value=5.2e-05  Score=50.22  Aligned_cols=31  Identities=13%  Similarity=0.237  Sum_probs=22.2

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++++++.+.+|     ++++|++|+|||+|+ +.+.+
T Consensus        36 l~~~~l~~~~G-----vlL~Gp~GtGKTtLa-kala~   66 (274)
T 2x8a_A           36 FKALGLVTPAG-----VLLAGPPGCGKTLLA-KAVAN   66 (274)
T ss_dssp             HHHTTCCCCSE-----EEEESSTTSCHHHHH-HHHHH
T ss_pred             HHHcCCCCCCe-----EEEECCCCCcHHHHH-HHHHH
Confidence            34445544433     899999999999999 55544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.37  E-value=0.00017  Score=45.21  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      ..++++|.+|+||||++ +.+.+.+
T Consensus        22 ~~i~i~G~~GsGKSTl~-~~L~~~~   45 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLA-KNLQKHL   45 (207)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHHTTS
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHhc
Confidence            78999999999999999 5555543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.36  E-value=0.00019  Score=43.75  Aligned_cols=21  Identities=29%  Similarity=0.302  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+||||++..+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHH
Confidence            689999999999999995443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.36  E-value=0.00021  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++|||||||++.++.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            6899999999999999955544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.35  E-value=0.00013  Score=45.95  Aligned_cols=24  Identities=29%  Similarity=0.596  Sum_probs=21.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+++++|..|+|||||+.+++...
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            689999999999999999988753

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.35  E-value=0.00017  Score=45.40  Aligned_cols=27  Identities=15%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+.++   ..++++|++|+|||||+..++.
T Consensus        19 gi~~G---~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           19 GIPQG---FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             SEETT---CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCC---CEEEEEcCCCCCHHHHHHHHHH
Confidence            35566   7899999999999999976663

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.32  E-value=4.8e-05  Score=52.47  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=25.4

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .++++++.+.++    .++++|++|+|||||+ +.+
T Consensus        50 ~l~~v~l~~~~G----~~~lvG~NGaGKStLl-~aI   80 (415)
T 4aby_A           50 TITQLELELGGG----FCAFTGETGAGKSIIV-DAL   80 (415)
T ss_dssp             TEEEEEEECCSS----EEEEEESHHHHHHHHT-HHH
T ss_pred             ceeeEEEecCCC----cEEEECCCCCCHHHHH-HHH
Confidence            367788887766    7889999999999999 444

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.29  E-value=0.00025  Score=43.08  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||++..+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5689999999999999966654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.29  E-value=0.00022  Score=46.52  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++||||||++ +.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~-k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLC-KALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHH
T ss_pred             cEEEEECCCCCCHHHHH-HHHH
Confidence            68999999999999999 4444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.28  E-value=0.00022  Score=43.06  Aligned_cols=21  Identities=14%  Similarity=0.096  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|.+||||||++..+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999965543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.25  E-value=0.00027  Score=48.31  Aligned_cols=22  Identities=32%  Similarity=0.653  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+|||||+++++.
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999988875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.25  E-value=0.00025  Score=44.41  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..++++|++||||||++ +.+.+
T Consensus         3 ~~i~l~G~~GsGKST~~-~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIA-NLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHH-HHHHT
T ss_pred             cEEEEECCCCCCHHHHH-HHHHH
Confidence            56899999999999999 55444

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.25  E-value=0.00029  Score=44.17  Aligned_cols=26  Identities=27%  Similarity=0.298  Sum_probs=22.1

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.++   ..++++|++|+|||||+..++.
T Consensus        17 i~~G---~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPG---VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTT---SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCC---EEEEEECCCCCCHHHHHHHHHH
Confidence            4566   7899999999999999977765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.24  E-value=0.0003  Score=44.47  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++||||||++..+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~   26 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMA   26 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999994443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.23  E-value=0.00025  Score=43.52  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+||||||++..+.
T Consensus         5 ~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999996554

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.23  E-value=0.00027  Score=44.93  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      +.++   ..++++|++|+|||||+..++..
T Consensus        21 i~~G---~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETG---SITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETT---SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCC---eEEEEECCCCCcHHHHHHHHHHH
Confidence            3456   78999999999999999777663

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.23  E-value=0.00025  Score=53.51  Aligned_cols=33  Identities=21%  Similarity=0.238  Sum_probs=26.6

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++++. .++   ..++++|++|+||||++ |.+.
T Consensus       596 ~vlndisl~-~~g---~i~~ItGpNGsGKSTlL-r~ia  628 (800)
T 1wb9_A          596 FIANPLNLS-PQR---RMLIITGPNMGGKSTYM-RQTA  628 (800)
T ss_dssp             CCCEEEEEC-SSS---CEEEEECCTTSSHHHHH-HHHH
T ss_pred             eeeeccccc-CCC---cEEEEECCCCCChHHHH-HHHH
Confidence            456888887 666   78999999999999999 4443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.22  E-value=0.00011  Score=50.93  Aligned_cols=33  Identities=18%  Similarity=0.395  Sum_probs=26.4

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .++++++.+.++   ..++++|++|+|||||+..+.
T Consensus       158 ~l~~~~~~i~~~---~~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          158 FLKCMVYNIPKK---RYWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             HHHHHHHCCTTC---CEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHhcccccCCC---CEEEEECCCCCCHHHHHHHHH
Confidence            355667777788   899999999999999994433

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.21  E-value=0.00015  Score=46.89  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q psy6968          27 LGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++++|++|+|||+|+ +.+.+
T Consensus        52 ~ll~G~~G~GKTtl~-~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLA-RAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            899999999999999 54443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.20  E-value=0.00012  Score=55.87  Aligned_cols=30  Identities=23%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHH
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALV   41 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~   41 (93)
                      ..++++++.+..|   ..++|+|++|+|||||+
T Consensus       598 ~~Lk~Vsl~I~~G---eiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          598 NNLKNIDVEIPLG---VFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             TTCCSEEEEEESS---SEEEEECSTTSSHHHHH
T ss_pred             ccccccceEEcCC---cEEEEEccCCCChhhhH
Confidence            4578999999999   99999999999999997

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.20  E-value=0.00022  Score=45.78  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..++++|++|+||||++ +.+.+
T Consensus        21 ~~i~i~G~~GsGKSTl~-~~L~~   42 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYL-NHFEK   42 (230)
T ss_dssp             EEEEEECSTTSCHHHHH-HTTGG
T ss_pred             eEEEEECCCCCCHHHHH-HHHHh
Confidence            88999999999999999 55544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.00027  Score=44.20  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++..+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999965543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.19  E-value=0.00044  Score=52.97  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=28.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+.+++++...++   ..++++|++|+||||++ |.+
T Consensus       650 ~v~ndisl~~~~g---~i~~ItGpNGsGKSTlL-r~i  682 (934)
T 3thx_A          650 FIPNDVYFEKDKQ---MFHIITGPNMGGKSTYI-RQT  682 (934)
T ss_dssp             CCCEEEEEETTTB---CEEEEECCTTSSHHHHH-HHH
T ss_pred             eecccceeecCCC---eEEEEECCCCCCHHHHH-HHH
Confidence            3567888888877   78999999999999999 555

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.19  E-value=0.00037  Score=42.46  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||+...+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999965554

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.19  E-value=0.00022  Score=54.54  Aligned_cols=33  Identities=15%  Similarity=0.245  Sum_probs=28.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHR   43 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r   43 (93)
                      ..+.+++++.+.++   ..++++|++|+||||++..
T Consensus       660 ~~V~ndvsl~~~~g---~i~~ItGPNGaGKSTlLr~  692 (918)
T 3thx_B          660 QYVPNNTDLSEDSE---RVMIITGPNMGGKSSYIKQ  692 (918)
T ss_dssp             SSCCEEEEECTTSC---CEEEEESCCCHHHHHHHHH
T ss_pred             ceecccccccCCCC---eEEEEECCCCCchHHHHHH
Confidence            45678899988888   8899999999999999943

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.16  E-value=0.00032  Score=42.10  Aligned_cols=20  Identities=30%  Similarity=0.308  Sum_probs=17.2

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..++++|++||||||++..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36889999999999999555

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=97.16  E-value=2.8e-05  Score=53.56  Aligned_cols=27  Identities=11%  Similarity=-0.054  Sum_probs=19.9

Q ss_pred             EECC----eEEEEEEEecCCCCCCCCCCCCC
Q psy6968          65 VIDG----HSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        65 ~~~g----~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .+++    +.+.+++|||+||++|+.+++..
T Consensus       173 ~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y  203 (354)
T 2xtz_A          173 SPVGENKKSGEVYRLFDVGGQRNERRKWIHL  203 (354)
T ss_dssp             CCCCE------EEEEEEECCSTTGGGGTGGG
T ss_pred             EeccCccccceeeEEEECCCchhhhHHHHHH
Confidence            3566    67999999999999999887643

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.15  E-value=0.0003  Score=43.89  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++|.+||||||++..+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999954443

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.15  E-value=0.00024  Score=53.83  Aligned_cols=30  Identities=23%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVH   42 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~   42 (93)
                      .++++++.+..|   ..++|+|.+|+|||||+.
T Consensus       512 ~L~~vsl~i~~G---eiv~I~G~nGSGKSTLl~  541 (842)
T 2vf7_A          512 NLDNLDVRFPLG---VMTSVTGVSGSGKSTLVS  541 (842)
T ss_dssp             TEEEEEEEEESS---SEEEEECCTTSSHHHHCC
T ss_pred             ccccceEEEcCC---CEEEEEcCCCcCHHHHHH
Confidence            589999999999   999999999999999994

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.14  E-value=0.0001  Score=49.72  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -.++++|.+|+||||+++.++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            45789999999999999666653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.14  E-value=0.00042  Score=42.61  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||++..+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6789999999999999965543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.13  E-value=0.00049  Score=44.35  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+||||||++.++..
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999965544

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.12  E-value=0.0005  Score=42.70  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|..|+||||++..+..
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            6799999999999999955544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.11  E-value=0.00022  Score=46.85  Aligned_cols=20  Identities=35%  Similarity=0.561  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q psy6968          27 LGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++++|++|+|||+|+ +.+.+
T Consensus        76 vll~Gp~GtGKTtl~-~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLA-RAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEECCCcChHHHHH-HHHHH
Confidence            899999999999999 55443

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.10  E-value=0.00046  Score=42.26  Aligned_cols=21  Identities=14%  Similarity=0.113  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+||||||++..+.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999996544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=97.10  E-value=0.00066  Score=46.75  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .+++++|.+|+|||||++.++..
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhh
Confidence            57999999999999999888764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.10  E-value=0.00046  Score=43.29  Aligned_cols=21  Identities=43%  Similarity=0.588  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+||||++..+.
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999995444

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.09  E-value=0.00042  Score=41.90  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..++.
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999965554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.08  E-value=0.00045  Score=42.73  Aligned_cols=21  Identities=24%  Similarity=0.561  Sum_probs=17.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|.+||||||++..+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999965544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.08  E-value=0.00052  Score=46.71  Aligned_cols=24  Identities=38%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..+.++++|++||||||++ +.+.+
T Consensus        91 ~p~iigI~GpsGSGKSTl~-~~L~~  114 (321)
T 3tqc_A           91 VPYIIGIAGSVAVGKSTTS-RVLKA  114 (321)
T ss_dssp             CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCEEEEEECCCCCCHHHHH-HHHHH
Confidence            3478999999999999999 44443

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.08  E-value=0.00062  Score=42.35  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||++..+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999965543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.07  E-value=0.00044  Score=47.54  Aligned_cols=28  Identities=18%  Similarity=0.315  Sum_probs=21.3

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHR   43 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r   43 (93)
                      .+.++.+..+   + .+++|++|+|||||+.-
T Consensus        15 ~~~~i~~~~g---~-~~i~G~NGaGKTTll~a   42 (365)
T 3qf7_A           15 KNVDIEFQSG---I-TVVEGPNGAGKSSLFEA   42 (365)
T ss_dssp             EEEEEECCSE---E-EEEECCTTSSHHHHHHH
T ss_pred             cceEEecCCC---e-EEEECCCCCCHHHHHHH
Confidence            4556666655   5 55899999999999853

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.06  E-value=0.0005  Score=42.19  Aligned_cols=22  Identities=14%  Similarity=0.398  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+||||||+...+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999965543

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.04  E-value=0.00052  Score=47.35  Aligned_cols=23  Identities=26%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|+||||++. .+.+.
T Consensus       137 ~~i~ivG~~GsGKTTll~-~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIA-SMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHH-HHHHH
T ss_pred             CEEEEECCCCCCHHHHHH-HHHhh
Confidence            689999999999999994 44443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.04  E-value=0.00043  Score=45.48  Aligned_cols=26  Identities=19%  Similarity=0.211  Sum_probs=22.1

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.++   ..++++|++|+|||||+..++.
T Consensus        27 l~~G---~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           27 MVAG---TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EETT---SEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCC---CEEEEEcCCCCCHHHHHHHHHH
Confidence            4566   7899999999999999977764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.02  E-value=0.00063  Score=41.72  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+|+||||++..+.
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999996554

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.02  E-value=0.00051  Score=42.78  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++.+++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4678999999999999977765

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.02  E-value=3.1e-05  Score=50.36  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=17.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .++|+|++|||||||+ +.+.+.
T Consensus        29 ~~~i~GpnGsGKSTll-~~i~g~   50 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTM-AAFVTA   50 (227)
T ss_dssp             HHHHHSCCSHHHHHHH-HHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhcc
Confidence            5678999999999999 555443

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.02  E-value=0.00055  Score=43.04  Aligned_cols=21  Identities=14%  Similarity=0.360  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++++.|.+|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999965543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.01  E-value=0.00048  Score=42.17  Aligned_cols=21  Identities=19%  Similarity=0.169  Sum_probs=17.7

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|.+|+||||++..+..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999965543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.01  E-value=0.00033  Score=47.34  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|+|||||+ +.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa-~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLA-HIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHH-HHHHHH
T ss_pred             CeEEEECCCCCcHHHHH-HHHHHH
Confidence            46899999999999999 555443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.01  E-value=0.00051  Score=43.66  Aligned_cols=26  Identities=15%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.++   .-++++|++|+|||+|+.+++.
T Consensus        20 l~~G---~~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           20 IPER---NVVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EETT---CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCC---cEEEEECCCCCCHHHHHHHHHH
Confidence            4556   7889999999999999877764

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.01  E-value=0.00047  Score=51.76  Aligned_cols=32  Identities=22%  Similarity=0.172  Sum_probs=25.1

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .+++++++.   +   ..++++|++|+||||++ |.+.+
T Consensus       567 ~vl~disl~---g---~i~~I~GpNGsGKSTlL-r~iag  598 (765)
T 1ewq_A          567 FVPNDLEMA---H---ELVLITGPNMAGKSTFL-RQTAL  598 (765)
T ss_dssp             CCCEEEEES---S---CEEEEESCSSSSHHHHH-HHHHH
T ss_pred             eEeeeccCC---C---cEEEEECCCCCChHHHH-HHHHh
Confidence            446777776   5   78999999999999999 54443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.01  E-value=0.00082  Score=41.39  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||++..+.
T Consensus        14 ~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           14 IVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHH
Confidence            789999999999999995543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.00  E-value=0.00059  Score=42.96  Aligned_cols=21  Identities=24%  Similarity=0.362  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++++.|++|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999965544

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.00  E-value=0.00024  Score=48.37  Aligned_cols=31  Identities=29%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ++.++...++   ..++++|.+|+||||++..++
T Consensus        47 ~~l~~~~~~~---~~i~i~G~~g~GKSTl~~~l~   77 (341)
T 2p67_A           47 DAIMPYCGNT---LRLGVTGTPGAGKSTFLEAFG   77 (341)
T ss_dssp             HHHGGGCSCS---EEEEEEECTTSCHHHHHHHHH
T ss_pred             HhCCcccCCC---EEEEEEcCCCCCHHHHHHHHH
Confidence            3444545555   899999999999999997765

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.97  E-value=0.00089  Score=41.71  Aligned_cols=24  Identities=17%  Similarity=0.387  Sum_probs=19.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ....++++|.+|+||||++..+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            336899999999999999955543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.97  E-value=0.00077  Score=45.09  Aligned_cols=21  Identities=29%  Similarity=0.216  Sum_probs=18.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ...++|+|++||||||++..+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L   51 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQI   51 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            488999999999999999443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.96  E-value=0.00019  Score=55.08  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.9

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHR   43 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r   43 (93)
                      ..++++++.+..|   ..++|+|.+|+|||||+.-
T Consensus       638 ~~Lk~Vsl~I~~G---eiv~I~G~nGSGKSTLl~~  669 (972)
T 2r6f_A          638 HNLKNVSVKIPLG---TFVAVTGVSGSGKSTLVNE  669 (972)
T ss_dssp             SSCCSEEEEEESS---SEEECCBCTTSSHHHHHTT
T ss_pred             cccccceEEEcCC---CEEEEEcCCCCCHHHHHHH
Confidence            3578999999999   9999999999999999954

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.96  E-value=0.00063  Score=41.53  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=17.1

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .++++|.+|+||||+...+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            68999999999999995443

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.96  E-value=0.00089  Score=40.98  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=17.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||++..+.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~   26 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALE   26 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            688999999999999994443

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.92  E-value=0.00067  Score=44.27  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++++|++|+||||+...++.
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999966653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.91  E-value=0.001  Score=40.68  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||++..+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999965543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.91  E-value=0.00089  Score=45.38  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=23.3

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .++++...++   ..++++|++|+||||++..++
T Consensus        96 ~~l~~~~~~~---~vI~ivG~~G~GKTT~~~~LA  126 (320)
T 1zu4_A           96 YRIDFKENRL---NIFMLVGVNGTGKTTSLAKMA  126 (320)
T ss_dssp             CCCCCCTTSC---EEEEEESSTTSSHHHHHHHHH
T ss_pred             cCccccCCCC---eEEEEECCCCCCHHHHHHHHH
Confidence            3455555555   789999999999999996554

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=96.90  E-value=0.00095  Score=51.56  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=26.7

Q ss_pred             ceeeeceeeeCC-------CCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968           9 TFVTSHEFTLAR-------DVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus         9 ~~~~~~~~~~~~-------~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++++++...+       +   ..++|+|++|+||||++ |.+
T Consensus       770 ~v~ndi~l~~~~~~~~~~~g---~i~~ItGpNgsGKSTlL-r~i  809 (1022)
T 2o8b_B          770 FIPNDILIGCEEEEQENGKA---YCVLVTGPNMGGKSTLM-RQA  809 (1022)
T ss_dssp             CCCEEEEESCCCSCC---CC---CEEEEECCTTSSHHHHH-HHH
T ss_pred             eEeeeeeeccccccccCCCC---cEEEEECCCCCChHHHH-HHH
Confidence            456888887665       5   78999999999999999 544

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.89  E-value=0.00091  Score=44.50  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++|+||||++.++..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999966654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.89  E-value=0.00082  Score=41.13  Aligned_cols=21  Identities=19%  Similarity=0.309  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||++..+.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            578999999999999995554

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.89  E-value=0.00085  Score=41.87  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+|+||||++..+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999996554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.88  E-value=0.00078  Score=41.49  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+||||||++..+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999995554

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.88  E-value=0.00055  Score=41.39  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999965544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.88  E-value=0.00094  Score=45.93  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.++++|++|+||||++.-++
T Consensus       124 g~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999994443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.88  E-value=0.00078  Score=46.43  Aligned_cols=30  Identities=20%  Similarity=0.362  Sum_probs=22.7

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      +.+.++.+.++    ..+++|++|+||||++.-.
T Consensus        17 ~~~~~~~~~~g----~~~i~G~nG~GKttll~ai   46 (359)
T 2o5v_A           17 LAPGTLNFPEG----VTGIYGENGAGKTNLLEAA   46 (359)
T ss_dssp             CCSEEEECCSE----EEEEECCTTSSHHHHHHHH
T ss_pred             eeeeEEEEcCC----eEEEECCCCCChhHHHHHH
Confidence            35566666544    6889999999999999543

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.87  E-value=0.00095  Score=45.98  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .+++++|.+|+|||||++.++..
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhh
Confidence            58999999999999999888764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.87  E-value=0.0011  Score=43.00  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+||||++.++..
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999966653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.87  E-value=0.0008  Score=42.34  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999965543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.87  E-value=0.00082  Score=40.61  Aligned_cols=18  Identities=39%  Similarity=0.418  Sum_probs=15.5

Q ss_pred             eEEEECCCCCCHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHR   43 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r   43 (93)
                      -.+++|++|+|||+++.-
T Consensus        25 ~~~I~G~NGsGKStil~A   42 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDA   42 (149)
T ss_dssp             EEEEECCTTSSHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHH
Confidence            568899999999999853

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.85  E-value=0.0012  Score=44.60  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|++|+||||++..++.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHH
Confidence            6889999999999999965553

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.85  E-value=0.00058  Score=41.30  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|+|||+|+ +.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~-~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLL-QAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHH-HHHHHH
T ss_pred             CEEEEECCCCCCHHHHH-HHHHHH
Confidence            67899999999999999 555443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.84  E-value=0.0011  Score=41.89  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++..+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999955543

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.83  E-value=0.00098  Score=41.57  Aligned_cols=21  Identities=24%  Similarity=0.120  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+|+||||++..+.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            689999999999999995554

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.82  E-value=0.0011  Score=45.60  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.3

Q ss_pred             CCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968          19 ARDVPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        19 ~~~~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..|....|++++|..++||||++.++
T Consensus         4 ~~~~~~~k~lllG~~~sGKsT~~kq~   29 (354)
T 2xtz_A            4 GSGIHIRKLLLLGAGESGKSTIFKQI   29 (354)
T ss_dssp             CCCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred             cCCCCceeEEEECCCCCcHHHHHHHH
Confidence            45666789999999999999999765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.81  E-value=0.00094  Score=41.63  Aligned_cols=21  Identities=14%  Similarity=0.248  Sum_probs=18.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|++|+|||+++..+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999966554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.81  E-value=0.00091  Score=45.73  Aligned_cols=29  Identities=21%  Similarity=0.289  Sum_probs=23.6

Q ss_pred             eeeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          16 FTLARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        16 ~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..+.++   ..+.++|++|+|||||+..++..
T Consensus       126 ggi~~G---~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          126 GGIETQ---AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEESS---EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCC---eEEEEECCCCCCHHHHHHHHHHH
Confidence            345667   78999999999999999776653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.78  E-value=0.001  Score=42.30  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+||||||++.++.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999996554

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.77  E-value=0.0011  Score=42.17  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++++|++||||+|.+.+++.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999966554

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.77  E-value=0.0013  Score=40.73  Aligned_cols=22  Identities=32%  Similarity=0.608  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|..||||||+...+..
T Consensus         9 ~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            9 IIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999955543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.76  E-value=0.0015  Score=41.13  Aligned_cols=20  Identities=40%  Similarity=0.492  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..++++|.+|+||||++..+
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l   45 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVEL   45 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            78999999999999999543

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.75  E-value=0.0016  Score=41.00  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+||||||++..+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999955443

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.75  E-value=0.0011  Score=40.85  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=17.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|++|+|||+++..+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999966554

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.75  E-value=0.0011  Score=42.80  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+|||+++..+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHH
Confidence            468999999999999994443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.74  E-value=0.0014  Score=44.67  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ...++++|.+|+|||||+.+++.
T Consensus        79 ~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           79 AHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999988764

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.73  E-value=0.00097  Score=42.23  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+||||||++.++..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999965543

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.73  E-value=0.0011  Score=41.84  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=17.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++++.|.+|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999965543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.73  E-value=0.0014  Score=39.43  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++++.|.+|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999955443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.72  E-value=0.0014  Score=45.14  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..|++++|.+|+||||++.++
T Consensus        33 ~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHH
Confidence            489999999999999998654

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.72  E-value=0.0013  Score=40.91  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999977764

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.71  E-value=0.0017  Score=42.09  Aligned_cols=38  Identities=24%  Similarity=0.418  Sum_probs=19.4

Q ss_pred             CcceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968           7 SDTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++.++.++-.  .......|+|.|.+|+||||+...+..
T Consensus         7 ~~~~~~~~~~~--~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A            7 SEQTLQNHQQP--NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ----------------CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hHHHHHHhhhc--cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34455444432  222337899999999999999955443

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.70  E-value=0.0014  Score=39.59  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||++..+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999955443

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.69  E-value=0.0013  Score=40.59  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|.+|+||||++..+..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999955443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.69  E-value=0.0016  Score=45.75  Aligned_cols=22  Identities=23%  Similarity=0.169  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.++++|++|+||||++.-++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            6789999999999999955443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.68  E-value=0.0023  Score=39.74  Aligned_cols=21  Identities=14%  Similarity=0.328  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+|+||||++.++.
T Consensus        16 ~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           16 SVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999996555

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.67  E-value=0.0019  Score=42.16  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++..+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            5789999999999999965543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.66  E-value=0.001  Score=43.17  Aligned_cols=22  Identities=14%  Similarity=0.200  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++..+..
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999955443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.66  E-value=0.0014  Score=40.14  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||+...+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999955443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.66  E-value=0.00091  Score=40.78  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=14.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|.+|+||||++..+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CEEEEECCC----CHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999995554

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.66  E-value=0.0022  Score=41.24  Aligned_cols=26  Identities=27%  Similarity=0.442  Sum_probs=22.0

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+.....++++|..||||||++.+++
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence            34445889999999999999998887

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.65  E-value=0.0004  Score=43.43  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=17.1

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .++++|.+|+||||++..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47899999999999995554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.65  E-value=0.0018  Score=40.95  Aligned_cols=17  Identities=41%  Similarity=0.454  Sum_probs=15.1

Q ss_pred             eEEEECCCCCCHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVH   42 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~   42 (93)
                      -.+++|++|+||||++.
T Consensus        25 ~~~I~G~NgsGKStil~   41 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLD   41 (203)
T ss_dssp             EEEEECCTTSSHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHH
Confidence            56789999999999985

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.65  E-value=0.0017  Score=38.66  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..+++.|++|+|||+++ +.+..
T Consensus        25 ~~vll~G~~GtGKt~lA-~~i~~   46 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGA-RYLHQ   46 (145)
T ss_dssp             SCEEEESSTTSSHHHHH-HHHHH
T ss_pred             CCEEEECCCCCCHHHHH-HHHHH
Confidence            67999999999999999 66554

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.65  E-value=0.0016  Score=41.48  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|.+|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999965543

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.63  E-value=0.0017  Score=39.73  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|..|+||||++..+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999955543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.63  E-value=0.0017  Score=45.82  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=20.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..+|+++|.+|+||||+..++...
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999777654

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.62  E-value=0.0016  Score=40.46  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999954443

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.61  E-value=0.00039  Score=50.61  Aligned_cols=36  Identities=19%  Similarity=0.207  Sum_probs=27.2

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .++.+++.+..+   ..++++|++|+||||++ +.+.+..
T Consensus        49 ~l~~l~~~i~~g---~~vll~Gp~GtGKTtla-r~ia~~l   84 (604)
T 3k1j_A           49 AVEVIKTAANQK---RHVLLIGEPGTGKSMLG-QAMAELL   84 (604)
T ss_dssp             HHHHHHHHHHTT---CCEEEECCTTSSHHHHH-HHHHHTS
T ss_pred             hHhhccccccCC---CEEEEEeCCCCCHHHHH-HHHhccC
Confidence            345556666677   78999999999999999 5555543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.61  E-value=0.00047  Score=46.47  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=23.3

Q ss_pred             eeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          11 VTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        11 ~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++.....+..+.... +++.|++|+||||++..++.
T Consensus        34 ~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           34 ITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             HHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHH
Confidence            333444445553323 89999999999999955543

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.59  E-value=0.0021  Score=42.36  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++++|.+|+||||++.++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999966654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.58  E-value=0.0015  Score=45.66  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++|+|++|+|||||+..++
T Consensus       179 ei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEcCCCCChHHHHHHHH
Confidence            689999999999999997665

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.57  E-value=0.0013  Score=44.19  Aligned_cols=28  Identities=25%  Similarity=0.353  Sum_probs=20.8

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ..++.+.++    ..+++|++|+|||+|+.-+
T Consensus        17 ~~~l~~~~g----~~~i~G~NGsGKS~ll~ai   44 (322)
T 1e69_A           17 PSLIGFSDR----VTAIVGPNGSGKSNIIDAI   44 (322)
T ss_dssp             CEEEECCSS----EEEEECCTTTCSTHHHHHH
T ss_pred             CeEEecCCC----cEEEECCCCCcHHHHHHHH
Confidence            345555555    6789999999999999443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.57  E-value=0.0019  Score=42.01  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|+||||++..+.
T Consensus        10 ~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999995544

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.57  E-value=0.002  Score=44.94  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=17.1

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ...+++|++|+|||||+.-+
T Consensus        27 ~~~~i~G~nG~GKstll~ai   46 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAI   46 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            57889999999999999533

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.55  E-value=0.0018  Score=43.35  Aligned_cols=21  Identities=19%  Similarity=0.370  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+||||++..++
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            688999999999999996554

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.53  E-value=0.0018  Score=42.53  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..+..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            5789999999999999954443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.52  E-value=0.0016  Score=43.71  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..++.
T Consensus        46 ~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           46 NNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999965554

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.52  E-value=0.0064  Score=43.12  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -..|.|+|+..+|||+|+++++.
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Confidence            36788999999999999998875

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.51  E-value=0.0022  Score=43.42  Aligned_cols=18  Identities=39%  Similarity=0.418  Sum_probs=15.4

Q ss_pred             eEEEECCCCCCHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHR   43 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r   43 (93)
                      -.+++|++|+|||+++.-
T Consensus        25 ~~~i~G~NGsGKS~lleA   42 (339)
T 3qkt_A           25 INLIIGQNGSGKSSLLDA   42 (339)
T ss_dssp             EEEEECCTTSSHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHH
Confidence            447999999999999953

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.51  E-value=0.002  Score=42.76  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      --++|.|+.|+|||+|+..+...
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            46889999999999999777653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.51  E-value=0.002  Score=43.18  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q psy6968          27 LGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~   46 (93)
                      +++.|++|+||||++..++.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999954444

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.50  E-value=0.0021  Score=41.23  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|+|||+++..+.
T Consensus        40 ~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            568999999999999995544

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.50  E-value=0.0021  Score=41.40  Aligned_cols=21  Identities=19%  Similarity=0.379  Sum_probs=16.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -++++|++||||+|.+.+++.
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999966554

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.49  E-value=0.002  Score=42.02  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..+..
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5699999999999999955443

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.49  E-value=0.0019  Score=46.26  Aligned_cols=27  Identities=30%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+.+|   ..++++|++|+|||||+..++.
T Consensus       277 ~i~~G---~i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          277 GFFKD---SIILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             SEESS---CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCC---cEEEEEeCCCCCHHHHHHHHHH
Confidence            45666   7899999999999999976664

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.48  E-value=0.002  Score=40.77  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||++..+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999995544

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.46  E-value=0.003  Score=40.45  Aligned_cols=21  Identities=29%  Similarity=0.490  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||+...+.
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIA   37 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999995444

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.45  E-value=0.0026  Score=40.66  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||++..+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999995554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.45  E-value=0.0013  Score=47.76  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=21.3

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +.++   ..++++|.+|||||||+ +.+.+.
T Consensus       366 ~~~G---~iI~LiG~sGSGKSTLa-r~La~~  392 (552)
T 3cr8_A          366 ERQG---FTVFFTGLSGAGKSTLA-RALAAR  392 (552)
T ss_dssp             GGSC---EEEEEEESSCHHHHHHH-HHHHHH
T ss_pred             cccc---eEEEEECCCCChHHHHH-HHHHHh
Confidence            4456   88999999999999999 555443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.43  E-value=0.0023  Score=43.16  Aligned_cols=21  Identities=19%  Similarity=0.464  Sum_probs=18.1

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|++|+|||+++..+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999965554

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.41  E-value=0.0037  Score=41.09  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+|||+++..+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la   68 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLA   68 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHH
Confidence            579999999999999994443

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.41  E-value=0.0028  Score=38.25  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.+++.|..||||||+...+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            468899999999999995544

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.39  E-value=0.0025  Score=42.36  Aligned_cols=21  Identities=19%  Similarity=0.224  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|+|||+++..+.
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala   70 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIA   70 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHH
Confidence            579999999999999994443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.39  E-value=0.0024  Score=42.58  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5789999999999999954443

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.38  E-value=0.0021  Score=42.61  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=19.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .++|.|+.|+|||+|+..+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            6889999999999999877653

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.37  E-value=0.0034  Score=39.83  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-+++.|++|+|||+|+..++.
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            6889999999999999988753

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.36  E-value=0.0034  Score=41.32  Aligned_cols=19  Identities=21%  Similarity=0.538  Sum_probs=16.9

Q ss_pred             eeEEEECCCCCCHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHR   43 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r   43 (93)
                      ..+++.|++|+|||+++..
T Consensus        68 ~~vll~G~~GtGKT~la~~   86 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALK   86 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHH
Confidence            5799999999999999953

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.36  E-value=0.0036  Score=41.40  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=18.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ...|+|.|.+||||||++..+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999995544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.35  E-value=0.0025  Score=40.91  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..++++|++|+|||+++..++...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            679999999999999998777643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.33  E-value=0.0038  Score=41.71  Aligned_cols=21  Identities=24%  Similarity=0.233  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|.+|+||||++..++
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la  119 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLA  119 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            678889999999999995444

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.32  E-value=0.003  Score=41.35  Aligned_cols=21  Identities=19%  Similarity=0.449  Sum_probs=17.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|+|||+++..+.
T Consensus        51 ~~vll~G~~GtGKT~la~~la   71 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLA   71 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            578999999999999995444

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.31  E-value=0.0042  Score=42.38  Aligned_cols=23  Identities=26%  Similarity=0.260  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .-++|+|++|||||+|+.+++..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            45789999999999999777654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.31  E-value=0.0033  Score=43.19  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..++|+|+.|+|||+|...++..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999666543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.29  E-value=0.0045  Score=42.13  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .-++|+|+.|+|||+|+.+++..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            46789999999999999777643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.29  E-value=0.0042  Score=42.34  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++|+|++|+||||+...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999966554

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.27  E-value=0.0015  Score=46.87  Aligned_cols=21  Identities=33%  Similarity=0.518  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -++++|++|+|||+|+ +.+.+
T Consensus        66 GvLL~GppGtGKTtLa-raIa~   86 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLA-RAVAG   86 (499)
T ss_dssp             EEEEECSSSSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            3899999999999999 55544

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.26  E-value=0.013  Score=40.38  Aligned_cols=27  Identities=11%  Similarity=-0.027  Sum_probs=14.6

Q ss_pred             EEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          63 EVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        63 ~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .+.+++  +.+++||++||++++.++...
T Consensus       195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~  221 (362)
T 1zcb_A          195 DFEIKN--VPFKMVDVGGQRSERKRWFEC  221 (362)
T ss_dssp             EEEETT--EEEEEEEECC-------CTTS
T ss_pred             EeeeCC--eEEEEEeccchhhhhhhHHHH
Confidence            445554  789999999999999887653

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.26  E-value=0.0048  Score=40.12  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=18.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ...+++.|++|+|||+++..+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            36799999999999999955443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.26  E-value=0.0038  Score=42.86  Aligned_cols=23  Identities=30%  Similarity=0.560  Sum_probs=19.4

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHH
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ...+|++++|..++||||++.++
T Consensus        30 ~~~~klLlLG~geSGKST~~KQm   52 (353)
T 1cip_A           30 AREVKLLLLGAGESGKSTIVKQM   52 (353)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHH
T ss_pred             cccceEEEEcCCCCCchhHHHHH
Confidence            34699999999999999998754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.25  E-value=0.0015  Score=38.90  Aligned_cols=23  Identities=13%  Similarity=0.179  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ..+++.|++|+|||+++ +.+...
T Consensus        28 ~~vll~G~~GtGKt~lA-~~i~~~   50 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVA-RYFHKN   50 (143)
T ss_dssp             SCEEEEEETTCCHHHHH-GGGCCT
T ss_pred             CcEEEECCCCccHHHHH-HHHHHh
Confidence            57999999999999999 776654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.25  E-value=0.0021  Score=46.29  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..++++|++|+|||+++ +.+.+
T Consensus       109 ~~vll~Gp~GtGKTtla-r~ia~  130 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLA-KSIAK  130 (543)
T ss_dssp             CEEEEESSSSSSHHHHH-HHHHH
T ss_pred             CEEEEECCCCCCHHHHH-HHHHH
Confidence            57899999999999999 55543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.21  E-value=0.0033  Score=44.31  Aligned_cols=29  Identities=24%  Similarity=0.276  Sum_probs=24.9

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHH
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      +..+++.+|   -+++++|++|+|||+|+..+
T Consensus       166 D~~~pi~rG---Qr~~IvG~sG~GKTtLl~~I  194 (422)
T 3ice_A          166 DLASPIGRG---QRGLIVAPPKAGKTMLLQNI  194 (422)
T ss_dssp             HHHSCCBTT---CEEEEECCSSSSHHHHHHHH
T ss_pred             eeeeeecCC---cEEEEecCCCCChhHHHHHH
Confidence            567778888   89999999999999999543

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.20  E-value=0.0029  Score=42.50  Aligned_cols=22  Identities=18%  Similarity=0.247  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999965554

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.19  E-value=0.0037  Score=41.73  Aligned_cols=20  Identities=15%  Similarity=0.305  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q psy6968          27 LGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~   46 (93)
                      +++.|++|+|||+++..+..
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999955443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.18  E-value=0.0033  Score=43.82  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-++++|.+|+||||++.++..
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999966554

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.18  E-value=0.0033  Score=41.77  Aligned_cols=21  Identities=38%  Similarity=0.433  Sum_probs=16.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .-+++.|++|+|||+++..++
T Consensus        37 ~~lLl~GppGtGKT~la~aiA   57 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVF   57 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            467778999999999995444

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.17  E-value=0.004  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-+.|.|++|+|||||+..++.
T Consensus        62 ~i~~I~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIA   83 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6788999999999999977764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.15  E-value=0.0039  Score=42.77  Aligned_cols=22  Identities=36%  Similarity=0.440  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++|+|++|+|||||+.++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4688999999999999976654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.15  E-value=0.0029  Score=44.27  Aligned_cols=36  Identities=14%  Similarity=0.067  Sum_probs=0.0

Q ss_pred             CCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCCC
Q psy6968          55 PEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSAP   92 (93)
Q Consensus        55 ~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~~   92 (93)
                      +|.|.....+.+++  +.+++|||+||++|+.+++..+
T Consensus       203 ~TiGi~~~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf  238 (402)
T 1azs_C          203 LTSGIFETKFQVDK--VNFHMFDVGGQRDERRKWIQCF  238 (402)
T ss_dssp             CCCSEEEEEEEETT--EEEEEEEECCSGGGGGGGGGGT
T ss_pred             ceeeeEEEEeecCC--ccceecccchhhhhhhhhHhhc

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.14  E-value=0.0049  Score=38.16  Aligned_cols=21  Identities=38%  Similarity=0.464  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|.+|+||||+...+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999954433

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.11  E-value=0.0042  Score=41.82  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      --+++.|++|+|||+++..+..
T Consensus        46 ~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            5689999999999999955554

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.10  E-value=0.0036  Score=42.14  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..+..
T Consensus        71 ~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999955543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.09  E-value=0.0044  Score=41.37  Aligned_cols=22  Identities=18%  Similarity=0.179  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++.|++|+|||+++..+..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4689999999999999955543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.09  E-value=0.0016  Score=45.05  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=22.4

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHH
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVH   42 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~   42 (93)
                      ++..++..+.++. ...++++|++|+||||+..
T Consensus        11 il~~l~~~i~~g~-~~~i~l~G~~G~GKTTl~~   42 (359)
T 2ga8_A           11 VLQLLDNRIEDNY-RVCVILVGSPGSGKSTIAE   42 (359)
T ss_dssp             HHHHHHHTTTTCS-CEEEEEECCTTSSHHHHHH
T ss_pred             HHHHHHHHhccCC-eeEEEEECCCCCcHHHHHH
Confidence            3444444455552 2469999999999999994

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.08  E-value=0.0071  Score=38.03  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=19.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ....+++.|..||||||+...+..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            347899999999999999955443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.08  E-value=0.0043  Score=39.06  Aligned_cols=23  Identities=26%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .-+++.|++|+||||++..++..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            68999999999999999888764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.05  E-value=0.0054  Score=39.68  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..+++.|++|+|||+++ +.+..
T Consensus        30 ~~vll~G~~GtGKt~la-~~i~~   51 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIA-SRLHY   51 (265)
T ss_dssp             SCEEEECCTTSCHHHHH-HHHHH
T ss_pred             CCEEEECCCCCcHHHHH-HHHHH
Confidence            67899999999999999 55443

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.04  E-value=0.0047  Score=42.30  Aligned_cols=28  Identities=21%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eeceeeeCCCCCeeeEEEECCCCCCHHHHHHH
Q psy6968          12 TSHEFTLARDVPDLRLGIVGSLASGKSALVHR   43 (93)
Q Consensus        12 ~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r   43 (93)
                      .+..+.+.++    -.+++|++|+|||+++.-
T Consensus        17 ~~~~i~f~~g----l~vi~G~NGaGKT~ileA   44 (371)
T 3auy_A           17 VNSRIKFEKG----IVAIIGENGSGKSSIFEA   44 (371)
T ss_dssp             EEEEEECCSE----EEEEEECTTSSHHHHHHH
T ss_pred             cceEEecCCC----eEEEECCCCCCHHHHHHH
Confidence            3344444444    568899999999999863

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.03  E-value=0.0042  Score=41.92  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..+..
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999965554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.03  E-value=0.00022  Score=47.79  Aligned_cols=48  Identities=13%  Similarity=-0.036  Sum_probs=35.4

Q ss_pred             HHHHHHHhCCCC-CCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          39 ALVHRFMTGAFL-QEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        39 sl~~r~~~~~f~-~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +|+.+|+.+.|. ++|.||.++ +...+..++   ++.+||+  ||+|+.+++.+
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~   81 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPH   81 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTT
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccc
Confidence            577799999998 789999654 443332333   6889999  99999887653

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=96.03  E-value=0.0049  Score=42.32  Aligned_cols=26  Identities=8%  Similarity=-0.071  Sum_probs=20.4

Q ss_pred             EEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          63 EVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        63 ~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+.++  .+.+++||++||++++.+++.
T Consensus       187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~  212 (353)
T 1cip_A          187 HFTFK--DLHFKMFDVGGQRSERKKWIH  212 (353)
T ss_dssp             EEEET--TEEEEEEEECCSGGGGGGGGG
T ss_pred             EEeeC--CeeEEEEeCCCchhhhHHHHH
Confidence            44554  478999999999999887754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.03  E-value=0.0041  Score=40.25  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=15.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..|++.|..|+||||++.++.
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999996544

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.02  E-value=0.0048  Score=41.29  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|+|||+++..+.
T Consensus        52 ~~vLl~GppGtGKT~la~aia   72 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVA   72 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            579999999999999995444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	4e-11
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	6e-09
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-08
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	5e-07
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	6e-07
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-06
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-06
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-06
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-06
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-06
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	2e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	5e-06
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-06
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-06
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	7e-06
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	1e-05
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-05
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-05
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-05
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-05
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-05
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-05
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-05
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-05
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-05
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-05
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-05
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-05
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-05
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-05
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	9e-05
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-04
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-04
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-04
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-04
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-04
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-04
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-04
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-04
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.001
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.002
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	0.003
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	0.003
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	0.003

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 4e-11
 Identities = 30/60 (50%), Positives = 47/60 (78%)

Query: 20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEG 79
          R +P+LRLG++G   SGKS+L+HRF+TG++   E  E  ++KKE+++DG +HL+LIR+E 
Sbjct: 1  RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEA 60

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 6e-09
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
           ++ ++G+   GK+ LV RF  G F   +    G     K V I+G    L I D
Sbjct: 6  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWD 60

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (107), Expect = 5e-08
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
           +L ++G    GK+ ++ RF   AF        G     + + +DG    L I D
Sbjct: 7  FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (100), Expect = 5e-07
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 21 DVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          ++P  +L +VG    GKSAL  +F    F+ +  P
Sbjct: 1  NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDP 35

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 6e-07
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRD 77
          +  L++ I+G    GKS+L+ RF    F  E +   G     K + +DG+   L I D
Sbjct: 5  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWD 62

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
          + +L ++GS   GKSAL  +F+ G F+++  P      ++ V      
Sbjct: 3  EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ 50

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (99), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
           +L ++G+   GKS L+ RF    +  +     G     K V +DG +  L I D
Sbjct: 7  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 61

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 1e-06
 Identities = 15/32 (46%), Positives = 20/32 (62%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          +++L I G    GKSALV RF+T  F+ E  P
Sbjct: 2  EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDP 33

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 1e-06
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRDEG 79
           ++ ++G    GKS L+ RF    F  E     G     + + +DG +    I D  
Sbjct: 5  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTA 61

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 1e-06
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRD 77
          +++ ++G    GKS L+ RF+   F        G     K V I+G    L I D
Sbjct: 3  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWD 57

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
          V  ++L ++G  A GKS++V RF++  F + + P  G  
Sbjct: 1  VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 27/48 (56%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
          + ++ ++GS   GKSAL  +F+TG F+++  P    F ++ +    S 
Sbjct: 3  EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 22/59 (37%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPE 83
          ++  +VG  A GK+ L+  + T  F  E  P         V+ G     L   +    E
Sbjct: 4  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 62

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-06
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
          RL +VG    GKSAL  +F+   F+ +  P       +  +     
Sbjct: 7  RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA 52

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-06
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIR 76
           + +L +VG+   GKSAL  + +   F+ E  P      ++ V+      LL  
Sbjct: 2  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDI 55

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (92), Expect = 5e-06
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
          L++ I+G    GK++L+HR++   + Q+     G       +     
Sbjct: 3  LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD 49

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 7e-06
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP-EGGRFKKEVVIDGHSHLLLIRDEGVPPE 83
          ++L  +G    GK+  ++R+    F  +     G  F+++ V+           +     
Sbjct: 6  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 84 LQP 86
          LQ 
Sbjct: 66 LQL 68

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 1e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          D R+ + G+   GKS+LV RF+ G F +   P
Sbjct: 2  DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIP 33

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-05
 Identities = 10/45 (22%), Positives = 21/45 (46%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH 69
           ++ I+G  + GKS+L  +F+ G F+    P       +++    
Sbjct: 5  RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNG 49

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 1e-05
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
           ++ +VG    GK+AL+H F    F +   P
Sbjct: 3  CKIVVVGDSQCGKTALLHVFAKDCFPENYVP 33

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-05
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
           +L IVG  A GK+ L+       F +   P     
Sbjct: 3  KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN 38

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRD 77
           ++ I+G+ + GK++ + R+   +F        G     K +  +     L I D
Sbjct: 6  FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLI 75
          ++ L +VG   SGK+  V+   +G F ++  P  G   +++     +  L  
Sbjct: 2  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWD 53

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 38.4 bits (88), Expect = 2e-05
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
          ++ +VGS   GKSAL  +FM   F+++  P   
Sbjct: 6  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 2e-05
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
           +++ +VG+ A GKS+++ R+  G F ++   
Sbjct: 2  AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKK 33

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 3e-05
 Identities = 7/31 (22%), Positives = 18/31 (58%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          L++ I+G    GK++L+++++   F  +   
Sbjct: 3  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKA 33

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRDEGVPP 82
           +  ++G+  +GKS L+H+F+   F  + +   G     K + + G    L I D     
Sbjct: 6  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 83 ELQPPNPS 90
            +    S
Sbjct: 66 RFRSVTRS 73

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 3e-05
 Identities = 9/32 (28%), Positives = 20/32 (62%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          +L++ ++G    GKS+++ RF+  +F    +P
Sbjct: 4  ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINP 35

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 4e-05
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG 58
           ++ ++G    GK+ L +RF  G F        G
Sbjct: 3  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 36

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP---EGGRFKKEVVIDGHSHLLLIRD 77
           ++ +VG    GK+ L+ RF  GAFL              K + +DG    L + D
Sbjct: 7  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
          +   +L ++G  A GKS+LV RF+ G F + +    G  
Sbjct: 4  ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 42

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 6e-05
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRDEG 79
           +  I+G +  GKS L+H+F    F+ +     G     + + + G    L I D  
Sbjct: 5  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 61

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 9e-05
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          +L  +G  + GK++L+ RFM  +F      
Sbjct: 2  KLVFLGEQSVGKTSLITRFMYDSFDNTYQA 31

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 1e-04
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
           ++  +VG  A GK+ L+  + T AF  E  P
Sbjct: 5  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP 36

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 8/31 (25%), Positives = 12/31 (38%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
           +  I+G    GKS L+ +F    F      
Sbjct: 4  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL 34

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 1e-04
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          +L +VG   +GK+  V R +TG F ++   
Sbjct: 5  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVA 34

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
          L+  +VG  A GK+ L+  +   AF +E  P
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVP 40

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQEESP 55
           ++ ++G    GK++LV R+    F  +   
Sbjct: 4  FKVVLLGEGCVGKTSLVLRYCENKFNDKHIT 34

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 19/46 (41%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
          +L +VG    GKSAL  +F+   F+ +  P       ++       
Sbjct: 8  KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIP 53

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAFLQE 52
           ++ ++G    GKS+L++R++T  F  +
Sbjct: 7  FKVILLGDGGVGKSSLMNRYVTNKFDTQ 34

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 5e-04
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPE 56
          R+ ++G    GKS L + F       +   E
Sbjct: 5  RVVLIGEQGVGKSTLANIFAGVHDSMDSDCE 35

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 5e-04
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 25 LRLGIVGSLASGKSALVHRFMTGAF 49
          +R+ +VG  A+GK+ ++++   G  
Sbjct: 1  MRILMVGLDAAGKTTILYKLKLGEI 25

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 7/26 (26%), Positives = 16/26 (61%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
          ++R+ I+G   +GK+ +++R   G  
Sbjct: 5  EMRILILGLDGAGKTTILYRLQVGEV 30

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (74), Expect = 0.002
 Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)

Query: 26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRF 60
          ++ ++G+   GKSAL   F        E+   G  
Sbjct: 3  KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHT 36

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.7 bits (73), Expect = 0.003
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 29 IVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH 71
           VG   SGK+ L  R +TG +   ++          V +   +
Sbjct: 5  FVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGN 47

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 7/26 (26%), Positives = 15/26 (57%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
          +++L ++G+  SGKS +V +      
Sbjct: 2  EVKLLLLGAGESGKSTIVKQMKIIHE 27

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.6 bits (73), Expect = 0.003
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 24 DLRLGIVGSLASGKSALVHRFMTGAF 49
          +L+L ++G+  SGKS  + +      
Sbjct: 2  ELKLLLLGTGESGKSTFIKQMRIIHG 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.74
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.74
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.72
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.72
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.72
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.72
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.71
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.7
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.7
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.69
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.67
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.67
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.65
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.65
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.63
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.58
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.57
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.53
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.51
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.5
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.49
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.45
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.41
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.37
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.36
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.36
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.33
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.25
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.25
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.13
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.13
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.11
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.11
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.11
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.1
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.1
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.09
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.07
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.07
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.06
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.06
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.05
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.03
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.02
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.01
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.01
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.01
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.01
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.99
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.99
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.98
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.97
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.8
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.77
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.73
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.67
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.61
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.55
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.44
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.41
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.38
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.33
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.12
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.08
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.95
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.85
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.81
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.75
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.73
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.71
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.7
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.68
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.66
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.65
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.62
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.59
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.54
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.53
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	97.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.52
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.51
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.48
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.47
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.47
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.46
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.45
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.44
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.44
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.44
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.43
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.43
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.42
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.42
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.41
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.4
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.39
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.36
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.32
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.32
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.32
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.32
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.31
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.3
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.3
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.28
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.27
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.26
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.24
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.22
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.22
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.21
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.21
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.21
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.18
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.18
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.16
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.13
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.11
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.09
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.08
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.03
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.01
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.01
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.99
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.95
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.95
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.91
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.9
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.9
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.89
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	96.88
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.88
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.88
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.88
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.87
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.84
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.83
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.78
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.78
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.76
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.75
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.73
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.72
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.72
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.72
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.72
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.7
d1okkd2	207	GTPase domain of the signal recognition particle r	96.7
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.7
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.65
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.61
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.6
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.59
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.59
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	96.58
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.55
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	96.54
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.5
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.47
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.44
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.4
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.4
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.36
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.34
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.34
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.3
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.29
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.27
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.27
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.25
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.2
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.17
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.16
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.13
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.07
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.06
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.02
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.99
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.96
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.96
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.95
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.81
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.71
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.7
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.63
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	95.6
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.52
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.42
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.39
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.34
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.33
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.17
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.13
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.94
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.8
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.8
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.64
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.41
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.33
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.28
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.2
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.16
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.1
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.08
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.05
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.89
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	93.71
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.47
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.32
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.75
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.69
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.67
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.66
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.41
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.27
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.99
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.87
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	91.62
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.02
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	90.9
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.86
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.72
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.7
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.49
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	89.15
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.35
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.22
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	87.2
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.02
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.62
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	86.5
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.28
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	86.27
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	85.8
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	85.76
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	85.35
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.34
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.73
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	84.18
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	83.95
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	83.95
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	83.93
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	83.66
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.4
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	82.63
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	80.85
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	80.65

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-18  Score=108.19  Aligned_cols=68  Identities=24%  Similarity=0.298  Sum_probs=60.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      .+||+++|+.|||||||+.||+.+.|.+++.||.+. +.....+++..+.+++||++|+++|..+++..
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~   71 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLS   71 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhc
Confidence            489999999999999999999999999999999665 46778889999999999999999998887543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.5e-18  Score=108.04  Aligned_cols=69  Identities=25%  Similarity=0.304  Sum_probs=61.0

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ...+|++++|+.|||||||+.||+.+.|.+++.||.++ +.+.+.+++..+.+.+||++||++|..++..
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~   76 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPL   76 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGG
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhh
Confidence            34589999999999999999999999999999999554 4677888999999999999999999887654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.7e-18  Score=103.15  Aligned_cols=67  Identities=24%  Similarity=0.382  Sum_probs=60.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ..||+++|+.|||||||++|++.+.|.+++.||. ..|.+.+.+++..+.+.+||++|+++|..++..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~   71 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQT   71 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccch
Confidence            4899999999999999999999999999999994 457888999999999999999999999887643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.8e-18  Score=102.97  Aligned_cols=62  Identities=31%  Similarity=0.453  Sum_probs=56.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ++|+++||+.|||||||+.||+.+.|.++|.||. ..|...+..++..+.+++||++|++++.
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~   64 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI   64 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc
Confidence            4899999999999999999999999999999994 4677778889999999999999998874

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.7e-18  Score=103.42  Aligned_cols=67  Identities=27%  Similarity=0.327  Sum_probs=60.0

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ...+||++||+.|||||||+.|++.+.|.+++.|+..+ +.+.+.+++..+.+.+||++|+++|..++
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~   71 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR   71 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeecccccccccccccc
Confidence            34589999999999999999999999999999998554 57788999999999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.9e-18  Score=105.14  Aligned_cols=67  Identities=22%  Similarity=0.247  Sum_probs=60.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +.||+++|++|||||||+.|++.+.|.+.+.||.+. +.+...+++..+.+++||++|++.|..+++.
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~   69 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPL   69 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGG
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchh
Confidence            479999999999999999999999999999999654 4677888999999999999999999888754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-17  Score=101.57  Aligned_cols=69  Identities=23%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +.+|++++|++|||||||+.|++.+.|.+++.|+.+ .+ .+.+..++..+.+++||++|++++..+++..
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~   72 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY   72 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCS
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhh
Confidence            348999999999999999999999999999999854 44 5678889999999999999999998887654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.9e-18  Score=103.18  Aligned_cols=67  Identities=27%  Similarity=0.430  Sum_probs=59.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++|+++||+.|||||||+.|++.+.|.++|.|+.+ .+...+.+++..+.+.+||++|++++..+++
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~   69 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRD   69 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCccccccccc
Confidence            458999999999999999999999999999999855 4677788899999999999999999987643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=1.4e-17  Score=104.14  Aligned_cols=66  Identities=27%  Similarity=0.402  Sum_probs=59.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||||+.+++.+.|..++.|+.+ .+ ...+.+++..+.+.+|||+|+++|..+++.
T Consensus         7 ~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~   74 (194)
T d2bcgy1           7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS   74 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGG
T ss_pred             EEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHH
Confidence            8999999999999999999999999999989844 34 578889999999999999999999988754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5.1e-18  Score=103.60  Aligned_cols=65  Identities=26%  Similarity=0.357  Sum_probs=53.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|+++||||||+++++.+.|.+++.|+.+ .+ ...+.+++..+.+.+|||+||++|..+++
T Consensus         3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~   69 (166)
T d1g16a_           3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITT   69 (166)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            7999999999999999999999999999888843 55 67888999999999999999999988764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=8.4e-18  Score=104.23  Aligned_cols=67  Identities=24%  Similarity=0.334  Sum_probs=59.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +.|++++|+.|||||||+.||+.+.|+++|.||.+ .+.+...+++..+.+++||++|++++..+++.
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   69 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPL   69 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccc
Confidence            47999999999999999999999999999999955 45677888999999999999999999877654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.6e-17  Score=100.04  Aligned_cols=64  Identities=27%  Similarity=0.401  Sum_probs=57.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ++||+++|++|||||||+.||+.+.|.+++.||.+ .+.....+++..+.+.+||++|+++|..+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~   66 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAM   66 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceecccccccccccccc
Confidence            58999999999999999999999999999999954 56677889999999999999999998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=102.99  Aligned_cols=67  Identities=25%  Similarity=0.333  Sum_probs=60.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      .+|++++|++|||||||+.||+.+.|.+++.||.++ +.+.+..++..+.+.+||++|++.|..++..
T Consensus         5 ~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~   72 (183)
T d1mh1a_           5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPL   72 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhh
Confidence            489999999999999999999999999999999654 4677889999999999999999999888654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.8e-17  Score=100.88  Aligned_cols=67  Identities=27%  Similarity=0.371  Sum_probs=60.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +++|++++|+.|||||||+.||+.+.|.+++.|+.+ .|.+.+.+++..+.+++||++|++++..+++
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   70 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMRE   70 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHH
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchh
Confidence            469999999999999999999999999999999854 5677888999999999999999999987753

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.5e-18  Score=104.35  Aligned_cols=65  Identities=28%  Similarity=0.445  Sum_probs=57.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|++++|++|||||||+.+++.+.|.+.+.++.+ .+ .+.+.+++..+.+.+|||+|+++|..+++
T Consensus         6 ~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~   72 (171)
T d2ew1a1           6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQ   72 (171)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence            8999999999999999999999999988888743 44 67889999999999999999999876554

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.9e-17  Score=100.02  Aligned_cols=66  Identities=27%  Similarity=0.424  Sum_probs=49.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCC-CCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEE-SPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~-~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.+||||||+.|++.+.|...+ .++.+ ++ ...+..++..+.+.+|||+|++++..++..
T Consensus         7 fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~   75 (170)
T d2g6ba1           7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHA   75 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHH
Confidence            89999999999999999999999987654 44433 44 567889999999999999999999887654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=8.5e-17  Score=98.14  Aligned_cols=65  Identities=28%  Similarity=0.473  Sum_probs=58.1

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++||+++|+.|||||||+.|++.+.|.+++.|+.++ +.....+++..+.+.+||++|++.+..+
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~   67 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASM   67 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccc
Confidence            4699999999999999999999999999999998554 5778889999999999999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=2.3e-17  Score=100.94  Aligned_cols=65  Identities=28%  Similarity=0.479  Sum_probs=58.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      .+|+++||+.|||||||+.||+.+.|.+++.|+.+ .| .+.+..++..+.+++||++|++++..++
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~   69 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLA   69 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHH
Confidence            48999999999999999999999999999999854 55 6788899999999999999999987654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.70  E-value=9.3e-17  Score=98.40  Aligned_cols=64  Identities=30%  Similarity=0.420  Sum_probs=55.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .+|++++|+.+||||||+.|++.+.|.++|.||. ..|.+.+.+++..+.+.+||++|++++..+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~   68 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI   68 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhh
Confidence            4899999999999999999999999999999995 457778899999999999999999988644

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=1.9e-17  Score=101.42  Aligned_cols=66  Identities=18%  Similarity=0.302  Sum_probs=57.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|+.|||||||+.|++.+.|.+.+.|+.+ .+ .+.+..++..+.+++|||+|+++|..+++.
T Consensus         6 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~   73 (169)
T d3raba_           6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTA   73 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHT
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHH
Confidence            8999999999999999999999999998888854 33 677888899999999999999998765443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.5e-17  Score=99.89  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=56.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|++|||||||++|++.+.|.+++.|+. ..+ ...+.+++..+.+++||++||+++..++
T Consensus         5 ~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~   70 (166)
T d1z0fa1           5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVT   70 (166)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHH
Confidence            799999999999999999999999999988873 344 6788899999999999999999987654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-16  Score=97.92  Aligned_cols=65  Identities=31%  Similarity=0.400  Sum_probs=54.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce-eEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR-FKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ++||++||++|||||||+.|++.+.|.+++.|+.++ +...+.+++..+.+.+||++|++++..++
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~   70 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMR   70 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccc
Confidence            389999999999999999999999999999999654 57888999999999999999999986543

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.2e-17  Score=98.56  Aligned_cols=63  Identities=22%  Similarity=0.235  Sum_probs=43.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +|++++|+.|||||||+.++....+... .++ ...|.+.+.+++..+.+.+||++|+++|..++
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~   65 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP   65 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CH
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeeeeeecceeeccccccceeeeecccccccceec
Confidence            7999999999999999999988776544 444 44577788999999999999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.9e-17  Score=100.96  Aligned_cols=67  Identities=22%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +||+++|+.+||||||+.+++.+.|.+++.|+.+ .+ .+.+.+++..+.+.+||++|+++|..+++..
T Consensus         7 ~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~   75 (173)
T d2fu5c1           7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY   75 (173)
T ss_dssp             EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTT
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHh
Confidence            7999999999999999999999999888877743 45 6788999999999999999999999887653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-16  Score=97.16  Aligned_cols=63  Identities=46%  Similarity=0.882  Sum_probs=54.6

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +.+|++++|+.+||||||+.+|+.+.|.... ++ ...|.+.+.++|+.+.+++||++|++++..
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~-~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~~   67 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQVLE-KTESEQYKKEMLVDGQTHLVLIREEAGAPDAKF   67 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCCCC-CSSCEEEEEEEEETTEEEEEEEEECSSCCCHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCCcC-CccceeEEEEeecCceEEEEEEeeccccccccc
Confidence            4599999999999999999999999997644 55 556788889999999999999999987653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.5e-16  Score=95.18  Aligned_cols=66  Identities=20%  Similarity=0.423  Sum_probs=58.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .+||+++|++|||||||+.|++.+.|.+++.||.+ + +......++..+.+.+||++|++++..+++
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   69 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITK   69 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhh
Confidence            38999999999999999999999999999999844 3 467788899999999999999999987653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2.3e-16  Score=96.26  Aligned_cols=67  Identities=27%  Similarity=0.459  Sum_probs=57.7

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      .++|+++||++|||||||+.|++.+.|.+++.|+.+ .+ ......++....+.+||++|++++..++.
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   71 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAP   71 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHH
Confidence            358999999999999999999999999999999844 44 56677788889999999999999876653

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9e-18  Score=103.18  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=54.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ++|++++|+.|||||||+.|++.+.|.+++.||.+ ++ .+.+..++..+.+.+||++|++++..+++.
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~   71 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG   71 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGG
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecch
Confidence            48999999999999999999999999999999854 44 677788999999999999999998877643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.2e-16  Score=97.11  Aligned_cols=64  Identities=22%  Similarity=0.361  Sum_probs=55.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +||+++|+.|||||||+.|++.+.|.+++.|+.+ .+ ......++..+.+.+||++|++++..++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~   66 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLI   66 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccch
Confidence            5899999999999999999999999999988844 33 5677788899999999999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4e-16  Score=96.04  Aligned_cols=65  Identities=29%  Similarity=0.430  Sum_probs=57.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ++|++++|+.|||||||++|++.+.|..++.++.. .+ .+.+.+++..+.+.+||++|++++..++
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   73 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLT   73 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHH
Confidence            48999999999999999999999999998877743 33 5678899999999999999999988764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.9e-17  Score=98.40  Aligned_cols=64  Identities=23%  Similarity=0.434  Sum_probs=55.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +||+++|+.|||||||++|++.+.|.+++.|+.+ .+ ...+..++..+.+.+||++|+++|..++
T Consensus         6 ~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~   71 (174)
T d2bmea1           6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVT   71 (174)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhH
Confidence            7999999999999999999999999999988843 33 5667788999999999999999986543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.5e-16  Score=94.93  Aligned_cols=65  Identities=22%  Similarity=0.321  Sum_probs=54.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--eeEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG--RFKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~--~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +|+++||+.|||||||++|++++.|..++.++.+  .+...+.+++..+.+.+||++|+++|..++.
T Consensus         5 ~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~   71 (175)
T d2f9la1           5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITS   71 (175)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHH
Confidence            7999999999999999999999999988877633  3467788999999999999999999987653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.7e-16  Score=95.59  Aligned_cols=66  Identities=29%  Similarity=0.447  Sum_probs=57.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      ++||++||+.|||||||+.|++.+.|.+++.|+.+ .+ ...+..++..+.+.+||++|+++|..+++
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~   73 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAP   73 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHH
Confidence            48999999999999999999999999999988854 34 56777888999999999999999876643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.8e-16  Score=94.05  Aligned_cols=65  Identities=34%  Similarity=0.485  Sum_probs=57.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-eeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      .++|++++|+++||||||+.|++.+.|++++.|+.+ .+...+..++..+.+.+||+.|++.+...
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~   67 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM   67 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccc
Confidence            458999999999999999999999999999988855 46667788999999999999999987543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.2e-15  Score=92.36  Aligned_cols=66  Identities=24%  Similarity=0.257  Sum_probs=52.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-e-eEEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-R-FKKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~-~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      -+|+++||++|||||||+.|++.+.|.+++.|+.. . +......++..+.+.+||++|++.+..+++
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~   70 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR   70 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHH
Confidence            38999999999999999999999999988877733 3 456677888999999999999999987754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=2.3e-16  Score=97.25  Aligned_cols=61  Identities=16%  Similarity=0.079  Sum_probs=47.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      ++|+++||+.|||||||++||..+.|++.+.     .  +..++...+.+++||++||++|+.+++..
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~-----~--~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~   62 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGI-----V--ETHFTFKDLHFKMFDVGGQRSERKKWIHC   62 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSE-----E--EEEEEETTEEEEEEEECCSGGGGGGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccE-----E--EEEEEeeeeeeeeeccccccccccchhhc
Confidence            5899999999999999999999887643321     1  23344455789999999999999887654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.57  E-value=5.8e-15  Score=91.13  Aligned_cols=65  Identities=25%  Similarity=0.390  Sum_probs=57.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQPPNP   89 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~~~~   89 (93)
                      +||+++|++|||||||+.+++++.|.+++.||.+ ++ .+.....+..+.+.+||++|++++..+++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~   69 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV   69 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccccc
Confidence            7999999999999999999999999999999854 44 56778888999999999999988877654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-14  Score=88.15  Aligned_cols=62  Identities=26%  Similarity=0.431  Sum_probs=50.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +||+++|+++||||||++|++.+.|.+++.++.+ .+ .+....++..+.+.+||++|++++..
T Consensus         7 ~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~   70 (174)
T d1wmsa_           7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRS   70 (174)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehh
Confidence            7999999999999999999999999999888843 34 66778899999999999999877643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=7.2e-15  Score=89.79  Aligned_cols=66  Identities=24%  Similarity=0.378  Sum_probs=42.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEE-ECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVV-IDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~-~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      +|++++|++|||||||+.+++.+.|.+.+.|+.+ .+ ..... .+...+.+.+||++|++++..++..
T Consensus         3 ~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~   71 (175)
T d1ky3a_           3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVA   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------C
T ss_pred             EEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHH
Confidence            8999999999999999999999999998888743 33 33333 3445678999999999998877654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.51  E-value=1.5e-14  Score=87.85  Aligned_cols=62  Identities=23%  Similarity=0.374  Sum_probs=50.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ++|++++|+++||||||++++..+.|.+.+.||.+.....+..+  .+.+.+||++|++.+...
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~--~~~~~i~D~~G~~~~~~~   63 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKG--NVTIKLWDIGGQPRFRSM   63 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEET--TEEEEEEEECCSHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeee--eEEEEEeecccccccccc
Confidence            58999999999999999999999999998989865322334444  478899999999887654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=7.9e-15  Score=90.56  Aligned_cols=63  Identities=22%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ++|+++||+.|||||||+.||..+.|.  +.||.|.-  ...+....+.+++||++||++++.++..
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~--~~~~~~~~~~~~~~d~~g~~~~~~~~~~   64 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGII--EYPFDLQSVIFRMVDVGGQRSERRKWIH   64 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCE--EEEEECSSCEEEEEECCCSTTGGGGGGG
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEE--EEEEeccceeeeeccccccccccccccc
Confidence            589999999999999999999999884  67886532  2234445678899999999999876643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.8e-14  Score=88.32  Aligned_cols=62  Identities=16%  Similarity=0.247  Sum_probs=42.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPSA   91 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~~   91 (93)
                      +|+++||++|||||||++||.   |.+.+.||.|.....+..  +.+.+++||++||+.++..++..
T Consensus         3 iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~--~~~~~~~~D~~gq~~~~~~~~~~   64 (200)
T d1zcba2           3 VKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEI--KNVPFKMVDVGGQRSERKRWFEC   64 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEE--TTEEEEEEEECC-------CTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEee--eeeeeeeecccceeeeccccccc
Confidence            899999999999999999993   556688997643333444  45788999999999998776543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.4e-15  Score=92.27  Aligned_cols=64  Identities=19%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-cee-EEEEEECC----------eEEEEEEEecCCCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRF-KKEVVIDG----------HSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~-~~~~~~~g----------~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +||+++|++|||||||++|++.+.|.+++.++. ..+ .+.+.+++          ..+.+.+||++|+++|+.++
T Consensus         6 ~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~   81 (186)
T d2f7sa1           6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT   81 (186)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHH
Confidence            899999999999999999999999988887773 334 44554433          35789999999999886543

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.45  E-value=5.9e-14  Score=84.90  Aligned_cols=62  Identities=27%  Similarity=0.290  Sum_probs=47.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ++|++++|++|||||||++++..+.+ +++.||.+.....+..++  +.+.+||++|+++++.++
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~~~--~~~~~~D~~G~~~~~~~~   63 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLEHRG--FKLNIWDVGGQKSLRSYW   63 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEEETT--EEEEEEEECCSHHHHTTG
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeeccccc--cceeeeecCcchhhhhHH
Confidence            48999999999999999999887766 446777654333444544  788999999999876544

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=8.3e-13  Score=79.72  Aligned_cols=62  Identities=24%  Similarity=0.422  Sum_probs=53.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ee-EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGG-RF-KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~-~~-~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .+||+++|+.|||||||+.|++.+.|.+++.++.+ .+ .+...+.+....+.+||+.|++.+.
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR   65 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhc
Confidence            38999999999999999999999999999888844 44 5677889999999999999877654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.6e-13  Score=81.45  Aligned_cols=61  Identities=21%  Similarity=0.345  Sum_probs=46.5

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCC-CCCC-c-ceeEEEEEECCeEEEEEEEec---CCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQE-ESPE-G-GRFKKEVVIDGHSHLLLIRDE---GVPPEL   84 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~-~~~t-~-~~~~~~~~~~g~~i~~~i~d~---~g~~~~   84 (93)
                      .+||+++|+.|||||||+.|++.+.+... +.++ . ..+.+.+.++++.+.+.+||+   +||++|
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~   69 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW   69 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc
Confidence            48999999999999999999998766533 2333 3 345788899999999999985   456654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.36  E-value=3.3e-13  Score=82.87  Aligned_cols=68  Identities=21%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCCCC
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPNPS   90 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~~~   90 (93)
                      ....++|++++|++|||||||+.|+..+.+.. ..||.+.....+..+  .+.+.+||++|+++++.++..
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~   80 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVETLSYK--NLKLNVWDLGGQTSIRPYWRC   80 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEEEEET--TEEEEEEEEC----CCTTGGG
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEEEeeC--CEEEEEEecccccccchhHHh
Confidence            34456999999999999999999988777654 446644322334444  478899999999999877654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.36  E-value=8.2e-13  Score=83.88  Aligned_cols=59  Identities=22%  Similarity=0.213  Sum_probs=47.6

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      ..|++++|++|||||||++|+..+.    +.||.|.....+.+++  +.+++||++||+.++..+
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~~~--~~~~~~D~~Gq~~~r~~w   64 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQVDK--VNFHMFDVGGQRDERRKW   64 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEETT--EEEEEEECCCSTTTTTGG
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEECc--EEEEEEecCccceeccch
Confidence            3899999999999999999998776    4578663344566665  788999999999987654

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.33  E-value=7.1e-13  Score=78.89  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      +||+++|++|||||||++|++.+.|...+......   ....+...+.+.+||++|++.+.
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~g~~~~~   58 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN---VETVEYKNISFTVWDVGGQDKIR   58 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC---EEEEECSSCEEEEEECCCCGGGH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE---EEEEeeeeEEEEEecCCCcccch
Confidence            48999999999999999999999887665444221   33455677899999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.25  E-value=8e-13  Score=80.60  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=46.1

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..++|++++|+++||||||+.|++.+.+...+ ||.+........  ..+.+.+||++|++.++..
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~   72 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY--KNVKFNVWDVGGQDKIRPL   72 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEEEEEEEE--TTEEEEEEEESCCGGGHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeEEEeec--cceeeEEecCCCcchhhhH
Confidence            34589999999999999999999988765543 443322223333  4478899999999887644

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.25  E-value=1.5e-12  Score=79.20  Aligned_cols=63  Identities=22%  Similarity=0.316  Sum_probs=47.1

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ..++|++++|+++||||||++++..+.|...+ |+.+.....+...+  +.+.+||++|+++++.+
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~~~~~i~~~~--~~~~i~d~~g~~~~~~~   76 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGFNIKSVQSQG--FKLNVWDIGGQRKIRPY   76 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTEEEEEEEETT--EEEEEEECSSCGGGHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeeeeEEEeccCC--eeEeEeeccccccchhH
Confidence            34599999999999999999999998875433 33333233444444  78899999999987543

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=6.3e-11  Score=76.41  Aligned_cols=52  Identities=23%  Similarity=0.368  Sum_probs=45.6

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.+|   ..++++|++|||||||+ +.+.+.    +.|+.|    ++.++|+++
T Consensus        19 ~~al~~vsl~v~~G---e~~~liGpsGaGKSTLl-~~i~Gl----~~p~sG----~I~i~g~~i   70 (239)
T d1v43a3          19 FTAVNKLNLTIKDG---EFLVLLGPSGCGKTTTL-RMIAGL----EEPTEG----RIYFGDRDV   70 (239)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEcceeEEECCC---CEEEEECCCCChHHHHH-HHHHcC----CCCCCC----EEEEcceec
Confidence            34589999999999   99999999999999999 888887    578888    788888764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.13  E-value=6.5e-11  Score=76.39  Aligned_cols=52  Identities=21%  Similarity=0.427  Sum_probs=46.5

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        15 ~~vL~~isl~i~~G---e~vaivG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~g~~i   66 (242)
T d1mv5a_          15 EQILRDISFEAQPN---SIIAFAGPSGGGKSTIF-SLLERF----YQPTAG----EITIDGQPI   66 (242)
T ss_dssp             SCSEEEEEEEECTT---EEEEEECCTTSSHHHHH-HHHTTS----SCCSBS----CEEETTEES
T ss_pred             CceeeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHHh----hCCCCC----EEEECCEEe
Confidence            46799999999999   99999999999999999 888887    678888    788998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=7.5e-11  Score=76.11  Aligned_cols=52  Identities=33%  Similarity=0.572  Sum_probs=46.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   .+++++|++|+|||||+ +.+.+.    +.|+.|    ++.+||.++
T Consensus        16 ~~vL~~isl~i~~G---e~vaIvG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~g~~i   67 (241)
T d2pmka1          16 PVILDNINLSIKQG---EVIGIVGRSGSGKSTLT-KLIQRF----YIPENG----QVLIDGHDL   67 (241)
T ss_dssp             CEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred             cceEeeeEEEEcCC---CEEEEECCCCCCHHHHH-HHHHhc----CCCCCC----EEEECCEEe
Confidence            45789999999999   99999999999999999 888887    678888    889998764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.11  E-value=6.9e-11  Score=74.27  Aligned_cols=52  Identities=17%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++++.+|   ..++++|++|||||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        14 ~~vl~~is~~i~~G---ei~~l~G~NGsGKSTLl-~~i~gl----~~p~~G----~I~~~g~~i   65 (200)
T d1sgwa_          14 KPVLERITMTIEKG---NVVNFHGPNGIGKTTLL-KTISTY----LKPLKG----EIIYNGVPI   65 (200)
T ss_dssp             SEEEEEEEEEEETT---CCEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred             CeEEeceEEEEcCC---CEEEEECCCCChHHHHH-HHHhcc----cccCCC----EEEECCEeh
Confidence            56799999999999   99999999999999999 888887    678888    788888764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=7.6e-11  Score=76.45  Aligned_cols=51  Identities=27%  Similarity=0.478  Sum_probs=46.0

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .+++++++.+.+|   .+++++|++|||||||+ +.+.+.    +.|+.|    ++.+||.++
T Consensus        28 ~vL~~isl~i~~G---e~vaivG~sGsGKSTLl-~li~gl----~~p~~G----~I~i~g~~i   78 (251)
T d1jj7a_          28 LVLQGLTFTLRPG---EVTALVGPNGSGKSTVA-ALLQNL----YQPTGG----QLLLDGKPL   78 (251)
T ss_dssp             CSEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEG
T ss_pred             EeEeceEEEEcCC---CEEEEECCCCCcHHHHH-HHHhcc----cCCCcC----EEEECCEec
Confidence            4789999999999   99999999999999999 888887    678888    889999764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=4.3e-11  Score=74.49  Aligned_cols=59  Identities=20%  Similarity=0.216  Sum_probs=44.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEE-CCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVI-DGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~-~g~~i~~~i~d~~g~~~~~   85 (93)
                      +|+++|+++||||||+++++.+.+...+ |+.+.....+.+ ++..+.+.+||++|+++++
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~   61 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLR   61 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeecccccccc
Confidence            6899999999999999999999887654 443322223333 4556789999999988653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.10  E-value=2.7e-10  Score=67.70  Aligned_cols=61  Identities=21%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      ++|+++||++|||||||+++++.+.|...+ ++.+........++  +.+.+||..+.+.+...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   65 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVETVTYKN--LKFQVWDLGGLTSIRPY   65 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSEEEEEEEETT--EEEEEEEECCCGGGGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccee-cccceeeeeeccCc--eEEEEeecccccccccc
Confidence            389999999999999999999999887543 44443333344444  67778898887766543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=1.2e-10  Score=74.74  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=44.7

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        20 al~~isl~i~~G---e~~~iiG~sGsGKSTLl-~~i~gl----~~p~sG----~I~~~g~~i   69 (230)
T d1l2ta_          20 ALKNVNLNIKEG---EFVSIMGPSGSGKSTML-NIIGCL----DKPTEG----EVYIDNIKT   69 (230)
T ss_dssp             EEEEEEEEECTT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             EEeceEEEEcCC---CEEEEECCCCCCcchhh-HhccCC----CCCCcc----eeEECCEEc
Confidence            589999999999   99999999999999999 888887    568888    788898765

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.07  E-value=1.4e-10  Score=75.18  Aligned_cols=52  Identities=21%  Similarity=0.388  Sum_probs=46.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   .++++||++|||||||+ +.+.+.    +.|+.|    ++.++|.++
T Consensus        28 ~~~L~~isl~i~~G---e~iaivG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~g~~i   79 (253)
T d3b60a1          28 VPALRNINLKIPAG---KTVALVGRSGSGKSTIA-SLITRF----YDIDEG----HILMDGHDL   79 (253)
T ss_dssp             CCSEEEEEEEECTT---CEEEEEECTTSSHHHHH-HHHTTT----TCCSEE----EEEETTEET
T ss_pred             CceeeceEEEEcCC---CEEEEECCCCChHHHHH-HHHhcc----cCCCcc----EEEECCccc
Confidence            45799999999999   99999999999999999 888887    678888    888998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.07  E-value=8.3e-11  Score=69.49  Aligned_cols=59  Identities=15%  Similarity=0.093  Sum_probs=43.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPP   87 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~   87 (93)
                      |++++|+++||||||+++++.+.+.. +.|+.+....  ......+...+||+.++..+..+
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   60 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRL   60 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE--EECCTTCCEEEEECCCSGGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE--EeccCCeeEEEEeeccchhhhhh
Confidence            89999999999999999999988764 5676543322  33334467789999887766544

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=2e-10  Score=74.04  Aligned_cols=51  Identities=25%  Similarity=0.488  Sum_probs=45.4

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        19 ~al~~vsl~i~~G---e~~~iiG~sGsGKSTLl-~~i~Gl----~~p~sG----~I~~~g~~i   69 (240)
T d3dhwc1          19 QALNNVSLHVPAG---QIYGVIGASGAGKSTLI-RCVNLL----ERPTEG----SVLVDGQEL   69 (240)
T ss_dssp             EEEEEEEEEECSS---CEEEEEESTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEE
T ss_pred             EEeeceeEEEcCC---CEEEEECCCCCCHHHHH-HHHcCC----ccccCC----ceEEcCeEe
Confidence            4589999999999   99999999999999999 888887    568888    788998766

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.06  E-value=2.6e-10  Score=73.53  Aligned_cols=52  Identities=21%  Similarity=0.347  Sum_probs=45.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++.+.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        16 ~~al~~vsl~i~~G---e~~~liG~sGaGKSTll-~~i~gl----~~p~sG----~I~~~g~~i   67 (240)
T d1g2912          16 VTAVREMSLEVKDG---EFMILLGPSGCGKTTTL-RMIAGL----EEPSRG----QIYIGDKLV   67 (240)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEE
T ss_pred             EEEEcceeeEEcCC---CEEEEECCCCChHHHHH-HHHhcC----CCCCCC----EEEECCEEe
Confidence            34689999999999   99999999999999999 888887    578888    788888766

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.4e-10  Score=74.49  Aligned_cols=52  Identities=21%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+
T Consensus        13 ~~~l~~isl~i~~G---ei~~liGpsGsGKSTLl-~~i~Gl----~~p~sG----~I~i~g~~i   64 (232)
T d2awna2          13 VVVSKDINLDIHEG---EFVVFVGPSGCGKSTLL-RMIAGL----ETITSG----DLFIGEKRM   64 (232)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEESSSCC
T ss_pred             EEEEeeeEEEEcCC---CEEEEECCCCChHHHHH-HHHhcC----CCCCCC----EEEECCEEC
Confidence            34689999999999   99999999999999999 888887    568888    788887654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.03  E-value=2.9e-10  Score=73.23  Aligned_cols=52  Identities=13%  Similarity=0.361  Sum_probs=45.8

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        19 ~~al~~vs~~i~~G---ei~~liGpnGaGKSTl~-~~i~Gl----~~p~~G----~I~~~G~~i   70 (240)
T d1ji0a_          19 IHAIKGIDLKVPRG---QIVTLIGANGAGKTTTL-SAIAGL----VRAQKG----KIIFNGQDI   70 (240)
T ss_dssp             EEEEEEEEEEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEeeeeEEECCC---CEEEEECCCCCcHHHHH-HHHhCC----CCCCcc----EEEeccccc
Confidence            34689999999999   99999999999999999 888887    567888    888998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.02  E-value=1.3e-10  Score=70.13  Aligned_cols=61  Identities=25%  Similarity=0.391  Sum_probs=41.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      .++||+++|++|||||||++|+..+.+.+.. ++.+.........+  +.+.+||+.+++....
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~   74 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVINN--TRFLMWDIGGQESLRS   74 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSCSSCEEEEETT--EEEEEEECCC----CG
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccceeEEEEeecc--eEEEEecccccccccc
Confidence            4499999999999999999999998876433 33222222344443  6888999998877654

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=2.1e-10  Score=74.49  Aligned_cols=52  Identities=21%  Similarity=0.447  Sum_probs=46.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..+++++++.+.+|   .+++++|++|||||||+ +.+.+.    +.|+.|    .+.++|.++
T Consensus        31 ~~vL~~isl~i~~G---e~vaivG~sGsGKSTLl-~ll~gl----~~p~~G----~I~i~g~~i   82 (255)
T d2hyda1          31 APILKDINLSIEKG---ETVAFVGMSGGGKSTLI-NLIPRF----YDVTSG----QILIDGHNI   82 (255)
T ss_dssp             CCSEEEEEEEECTT---CEEEEECSTTSSHHHHH-TTTTTS----SCCSEE----EEEETTEEG
T ss_pred             CcceeceEEEEcCC---CEEEEECCCCCcHHHHH-HHHHhc----CCcccc----ccccCCEEc
Confidence            56799999999999   99999999999999999 888887    678888    788998765

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.01  E-value=9.8e-11  Score=72.41  Aligned_cols=58  Identities=17%  Similarity=0.077  Sum_probs=40.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      +-.|+++|+++||||||+++++++.+.+...  ....  ...++.....+.+||++|++++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt--~~~~--~~~~~~~~~~~~l~D~~g~~~~~   60 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVV--SQEP--LSAADYDGSGVTLVDFPGHVKLR   60 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCC--CSSC--EEETTGGGSSCEEEECCCCGGGT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEE--ecce--EEEEEeCCeEEEEEecccccchh
Confidence            4589999999999999999999887643221  1111  22233334567899999988754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.01  E-value=3.7e-10  Score=73.41  Aligned_cols=52  Identities=23%  Similarity=0.427  Sum_probs=46.3

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|||||||+ +.+.+.    +.|+.|    ++.++|+++
T Consensus        15 ~~al~~vs~~i~~G---Ei~~iiG~sGsGKSTLl-~~i~Gl----~~p~~G----~I~~~G~~i   66 (258)
T d1b0ua_          15 HEVLKGVSLQARAG---DVISIIGSSGSGKSTFL-RCINFL----EKPSEG----AIIVNGQNI   66 (258)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEcceeeEEcCC---CEEEEECCCCCcHHHHH-HHHHcC----ccCCCC----CEEECCEEe
Confidence            45689999999999   99999999999999999 888887    568888    889999876

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.01  E-value=2.6e-10  Score=73.60  Aligned_cols=53  Identities=23%  Similarity=0.466  Sum_probs=46.2

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHL   72 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~   72 (93)
                      ...++++++++.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+.+.
T Consensus        18 ~~aL~~vsl~i~~G---e~~~iiG~sGsGKSTll-~~i~gl----~~p~~G----~I~~~g~~i~   70 (242)
T d1oxxk2          18 VVALDNVNINIENG---ERFGILGPSGAGKTTFM-RIIAGL----DVPSTG----ELYFDDRLVA   70 (242)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECSCHHHHHHHH-HHHHTS----SCCSEE----EEEETTEEEE
T ss_pred             EEEEeceEEEECCC---CEEEEECCCCCcHHHHH-HHHHcC----cCCCCc----eEEECCEEee
Confidence            34589999999999   99999999999999999 888887    578888    7888888663

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.00  E-value=2.6e-10  Score=73.08  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=45.3

Q ss_pred             ceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           9 TFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         9 ~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ..++++++.+.+|   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        14 ~aL~~vs~~i~~G---e~~~liGpsGaGKSTll-~~l~Gl----~~p~sG----~I~~~G~~i   64 (229)
T d3d31a2          14 FSLDNLSLKVESG---EYFVILGPTGAGKTLFL-ELIAGF----HVPDSG----RILLDGKDV   64 (229)
T ss_dssp             CEEEEEEEEECTT---CEEEEECCCTHHHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEeeeEEEECCC---CEEEEECCCCCcHHHHH-HHHhcC----cCCCCC----EEEEccEec
Confidence            3589999999999   99999999999999999 888887    578888    889998765

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.99  E-value=3.8e-10  Score=73.13  Aligned_cols=52  Identities=21%  Similarity=0.282  Sum_probs=46.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ...++++++++.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|+++
T Consensus        17 ~~aL~~vs~~v~~G---ei~~liG~nGaGKSTLl-~~i~Gl----~~p~~G----~I~~~g~~i   68 (254)
T d1g6ha_          17 FKALDGVSISVNKG---DVTLIIGPNGSGKSTLI-NVITGF----LKADEG----RVYFENKDI   68 (254)
T ss_dssp             EEEEEEECCEEETT---CEEEEECSTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEEC
T ss_pred             eEEEcceEEEECCC---CEEEEECCCCCcHHHHH-HHHHCC----CcCCCc----EEEECCEec
Confidence            34589999999999   99999999999999999 888887    578888    889998865

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.99  E-value=4.4e-10  Score=72.28  Aligned_cols=52  Identities=19%  Similarity=0.413  Sum_probs=46.0

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      +.+++++++.+.+|   ..++++|++|+|||||+ +.+.+.    +.|+.|    ++.++|+++
T Consensus        15 ~~vl~~vs~~v~~G---ei~glvG~nGaGKSTLl-~~l~G~----~~p~~G----~i~i~G~~i   66 (238)
T d1vpla_          15 KEILKGISFEIEEG---EIFGLIGPNGAGKTTTL-RIISTL----IKPSSG----IVTVFGKNV   66 (238)
T ss_dssp             EEEEEEEEEEECTT---CEEEEECCTTSSHHHHH-HHHTTS----SCCSEE----EEEETTEET
T ss_pred             EEEEccceeEEcCC---CEEEEECCCCCCHHHHH-HHHhcC----CCCCCC----EEEECcEec
Confidence            56799999999999   99999999999999999 888887    578888    788888754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.98  E-value=3.7e-10  Score=68.02  Aligned_cols=64  Identities=20%  Similarity=0.152  Sum_probs=39.3

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEEEEEEEecCCCCCCCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSHLLLIRDEGVPPELQPPN   88 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~~~   88 (93)
                      +...|+++||++|||||||++++..+.+...+ |+.+.....+..++.  ....||+.++..+....
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   74 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPTSEELTIAGM--TFTTFDLGGHIQARRVW   74 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEETTE--EEEEEEECC----CCGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccceeEEEeccc--ccccccccchhhhhhHH
Confidence            44589999999999999999999888876543 442221224566664  56789998888776543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=4.6e-10  Score=73.74  Aligned_cols=50  Identities=22%  Similarity=0.404  Sum_probs=44.4

Q ss_pred             cceeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCe
Q psy6968           8 DTFVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGH   69 (93)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~   69 (93)
                      +.+++++++.+.+|   .+++++|++|||||||+ +.+.+.    +.|+.|    .+.++|+
T Consensus        49 ~pvL~~isl~i~~G---e~vaivG~nGsGKSTLl-~~i~Gl----~~p~~G----~I~~~g~   98 (281)
T d1r0wa_          49 NPVLKNINLNIEKG---EMLAITGSTGSGKTSLL-MLILGE----LEASEG----IIKHSGR   98 (281)
T ss_dssp             CEEEEEEEEEECTT---CEEEEEESTTSSHHHHH-HHHHTS----SCCSEE----EEECCSC
T ss_pred             CeEEeCeEEEEcCC---CEEEEECCCCChHHHHH-HHHhCC----CcCCCc----EEEECCE
Confidence            56899999999999   99999999999999999 888887    678888    7788875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.80  E-value=3.1e-08  Score=59.91  Aligned_cols=59  Identities=15%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      -+|+++|.+|||||||++++++.....  ....+ ...........+  ..+.+|||+|+....
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~   67 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPM   67 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccc
Confidence            479999999999999999988764321  12222 222223344555  467899999987653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1e-08  Score=60.81  Aligned_cols=58  Identities=22%  Similarity=0.274  Sum_probs=39.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCC-c-ceeEEEEEECCeEEEEEEEecCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPE-G-GRFKKEVVIDGHSHLLLIRDEGVPPEL   84 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t-~-~~~~~~~~~~g~~i~~~i~d~~g~~~~   84 (93)
                      +||+++|+++||||||+++++...... ...|. . ......+...+.  .+.+||+.|..+.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~~~   62 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREA   62 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCc--eeeeccccccccc
Confidence            799999999999999999888655332 12222 2 122334556664  5678999997654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.73  E-value=1.1e-08  Score=65.72  Aligned_cols=46  Identities=24%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             eceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          13 SHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        13 ~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      ++++.+. +   ..++++|++|||||||+ +.+.+.    ..|+.|    ++.++|+++
T Consensus        17 ~vs~~~~-~---e~~~liGpnGaGKSTll-~~i~Gl----~~p~~G----~I~~~G~~i   62 (240)
T d2onka1          17 NVDFEMG-R---DYCVLLGPTGAGKSVFL-ELIAGI----VKPDRG----EVRLNGADI   62 (240)
T ss_dssp             EEEEEEC-S---SEEEEECCTTSSHHHHH-HHHHTS----SCCSEE----EEEETTEEC
T ss_pred             EEEEEeC-C---EEEEEECCCCChHHHHH-HHHHcC----CCCCce----EEEECCEEC
Confidence            5666663 3   57789999999999999 888887    578888    889999765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=6.7e-09  Score=66.30  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=40.0

Q ss_pred             eeeeceeeeCCCCCeeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcceeEEEEEECCeEE
Q psy6968          10 FVTSHEFTLARDVPDLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGRFKKEVVIDGHSH   71 (93)
Q Consensus        10 ~~~~~~~~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~~~~~~~~~g~~i   71 (93)
                      .++++++.+.+|   ..++++|++|+|||||+ +.+.+.     .|+.|    .+.++|+++
T Consensus        14 ~l~~isl~I~~G---ei~~iiG~nGaGKSTLl-~~l~Gl-----~~~~G----~I~~~g~~i   62 (231)
T d1l7vc_          14 RLGPLSGEVRAG---EILHLVGPNGAGKSTLL-ARMAGM-----TSGKG----SIQFAGQPL   62 (231)
T ss_dssp             TSCSEEEEEETT---CEEECBCCTTSSHHHHH-HHHHTS-----CCCSS----EEEESSSBG
T ss_pred             eecCEEEEEcCC---CEEEEECCCCCcHHHHH-HHHhCC-----CCCce----EEEECCEEC
Confidence            478899999999   99999999999999999 667774     24456    677777643

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.65  E-value=1.8e-08  Score=60.98  Aligned_cols=58  Identities=21%  Similarity=0.095  Sum_probs=34.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-ceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESPEG-GRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~-~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      .|+++|.++||||||++++++........+.. -..............+.+|||+|..+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~   61 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE   61 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeec
Confidence            48999999999999998876543221111111 11111122333334678999999543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.61  E-value=1.8e-09  Score=64.17  Aligned_cols=55  Identities=33%  Similarity=0.437  Sum_probs=36.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCC-CCCCC--cceeEEEEEECCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQ-EESPE--GGRFKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~-~~~~t--~~~~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      +||+++|.++||||||++++++..... ...|.  .......+..++  ..+.+|||+|-
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~   58 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGV   58 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEecccccc
Confidence            589999999999999999987654221 11121  111233455666  46678999984

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.3e-07  Score=57.11  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=36.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC--CCCCCC-cceeEEEEEECCeEEEEEEEecCCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL--QEESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPELQP   86 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~--~~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~~~~   86 (93)
                      +||+++|..+||||||+.++++....  ..+..+ .......+.+++.  .+.++|+.|......
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~   71 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSR   71 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCcccccc
Confidence            89999999999999999988865421  122222 1222234566665  456789988765443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=7.1e-08  Score=57.86  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=32.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCC--CCCCC-cceeEEEEEECCeEEEEEEEecCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQ--EESPE-GGRFKKEVVIDGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~--~~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~~   83 (93)
                      +|+++|+.+||||||++++++.....  ....+ .......+...  ...+.+||+.|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~d~~g~~~   60 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY--GKTFKLVDTCGVFD   60 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEET--TEEEEEEECTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccccccccc--ccccccccccceee
Confidence            68999999999999998887654321  11111 11112233333  35678999998543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.41  E-value=1.1e-06  Score=56.39  Aligned_cols=59  Identities=20%  Similarity=0.093  Sum_probs=40.1

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHhCC-CCCC-CCCC-cceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMTGA-FLQE-ESPE-GGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~~~-f~~~-~~~t-~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      ....+|+++|..|+||||+++.+++.. |... ..++ .........++|.  .+.++||.|-.
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~   91 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLI   91 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSE
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeeccc
Confidence            345899999999999999998888744 3221 1222 2223345567775  56799999853

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.38  E-value=5.1e-07  Score=54.19  Aligned_cols=51  Identities=20%  Similarity=0.117  Sum_probs=32.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCCCCCCCC--CcceeEEEEEECCeEEEEEEEecCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAFLQEESP--EGGRFKKEVVIDGHSHLLLIRDEGVPP   82 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~--t~~~~~~~~~~~g~~i~~~i~d~~g~~   82 (93)
                      .|+++|.++||||||++++++........|  |...  ..+...+    +.+|||+|-.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~   54 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFG   54 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCce
Confidence            589999999999999988877654332222  2221  1223332    4689999853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.33  E-value=9.7e-08  Score=57.84  Aligned_cols=55  Identities=20%  Similarity=0.094  Sum_probs=33.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC-CCCCC-CcceeEEEEEE-CCeEEEEEEEecCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL-QEESP-EGGRFKKEVVI-DGHSHLLLIRDEGVP   81 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~-~~~~~-t~~~~~~~~~~-~g~~i~~~i~d~~g~   81 (93)
                      ..|+++|.++||||||+++++..... ..+.+ |.........+ +++  .+.+|||+|.
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~   59 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGL   59 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCc
Confidence            36899999999999999887653321 11222 22211112233 444  4568999985

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.12  E-value=9e-07  Score=52.74  Aligned_cols=22  Identities=27%  Similarity=0.560  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .|++++|++|||||||+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            3899999999999999955444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.08  E-value=6.2e-06  Score=55.87  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++|+++|.+|+|||||++.+++.
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            89999999999999999887763

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=4.7e-06  Score=49.60  Aligned_cols=24  Identities=29%  Similarity=0.425  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      -.|+++|.++||||||++++++..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~   29 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQK   29 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999998888654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=6.3e-06  Score=48.93  Aligned_cols=26  Identities=15%  Similarity=0.349  Sum_probs=21.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ...+|+++|.++||||||++++....
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34899999999999999997766554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.81  E-value=5.4e-06  Score=48.88  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -+|++.|++|+|||||+.++..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999966554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.76  E-value=6.6e-06  Score=48.49  Aligned_cols=23  Identities=17%  Similarity=0.497  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+|++.|++||||||++ +.+...
T Consensus         6 ~~I~i~G~~GsGKTT~~-~~La~~   28 (174)
T d1y63a_           6 INILITGTPGTGKTSMA-EMIAAE   28 (174)
T ss_dssp             CEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CEEEEEeCCCCCHHHHH-HHHHHH
Confidence            89999999999999999 555444

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.75  E-value=9.3e-06  Score=47.63  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -++++.|++||||||++.++..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999955543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.73  E-value=1.4e-05  Score=48.16  Aligned_cols=21  Identities=19%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++++|++||||||++.+++
T Consensus         4 ~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            899999999999999995554

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.71  E-value=4.5e-05  Score=48.94  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ..|+++||-++||||||+..+...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCC
Confidence            379999999999999999666543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.70  E-value=1.8e-05  Score=49.50  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q psy6968          27 LGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~   47 (93)
                      |+++|..++|||||+.+++..
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhh
Confidence            899999999999999887653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.68  E-value=3.3e-05  Score=47.67  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=20.8

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHH
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +.++++++|-.++|||||+.+++
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHH
Confidence            45899999999999999998886

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.66  E-value=1.6e-05  Score=46.52  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -++++|.+|+|||||+.+++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999988764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=1.4e-05  Score=48.32  Aligned_cols=24  Identities=17%  Similarity=0.419  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      -+|+++|.+|+|||||++++++..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCC
Confidence            379999999999999998887643

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=2e-05  Score=45.40  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .|+++|++||||||+. +.+..
T Consensus         4 ~I~l~G~~GsGKSTva-k~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIG-RQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            6889999999999999 54443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.1e-05  Score=46.19  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .|++.|++|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999977764

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.59  E-value=3.1e-05  Score=44.67  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=18.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -|++.|++|+||||++.+++..
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4778999999999999777653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.8e-05  Score=47.02  Aligned_cols=22  Identities=27%  Similarity=0.510  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -|+|+|++||||+||+.+++..
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3789999999999999776653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.53  E-value=4.1e-05  Score=46.15  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..|+++|++|+||||++.+++.
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999976654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.53  E-value=0.00011  Score=47.46  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=20.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ...|+++||-++||||||+..+..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC
Confidence            348999999999999999966654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.52  E-value=4.3e-05  Score=44.43  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=17.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -+++.|++||||||++.++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999965553

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.51  E-value=4.9e-05  Score=44.45  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..|.++|.+||||||+...+.
T Consensus         7 ~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            788999999999999994433

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=4.2e-05  Score=45.41  Aligned_cols=20  Identities=20%  Similarity=0.405  Sum_probs=17.2

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +++++|++|+||||++..++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999995443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.47  E-value=4.2e-05  Score=48.27  Aligned_cols=58  Identities=21%  Similarity=0.157  Sum_probs=33.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----ccee----EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRF----KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~----~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      ...+++|.+|||||||++.++.+.-...-.-+    .|.+    ..-+.+++.   -.+.||.|-..|.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            57799999999999999877654322211111    1222    112334322   2478999877665

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=3.6e-05  Score=45.50  Aligned_cols=20  Identities=35%  Similarity=0.439  Sum_probs=16.8

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +++++|.+||||||+. +.+.
T Consensus         3 ~IvliG~~G~GKSTig-~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIG-RRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHH-HHHH
T ss_pred             cEEEECCCCCCHHHHH-HHHH
Confidence            5889999999999999 5444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=4.3e-05  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-++++|++||||+|++..++.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999966654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.45  E-value=0.00014  Score=46.58  Aligned_cols=54  Identities=22%  Similarity=0.219  Sum_probs=32.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcce--eEEEEEECCeEEEEEEEecCCC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTGAFLQEESPEGGR--FKKEVVIDGHSHLLLIRDEGVP   81 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t~~~--~~~~~~~~g~~i~~~i~d~~g~   81 (93)
                      .+++++||-++||||||++++....-.. ..+..|.  ....+..+.   .+.+.||+|-
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~-~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCC
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEE-ECCcccccccceEEECCC---CeEEecCCCc
Confidence            4899999999999999998888754211 1111221  011222322   3788999984

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.44  E-value=3.2e-05  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=21.0

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.+.++++|-.++|||||+.+++.
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHH
Confidence            458899999999999999988764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.44  E-value=4.2e-05  Score=46.02  Aligned_cols=22  Identities=36%  Similarity=0.418  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++|++||||||++.++..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999955443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.44  E-value=5.1e-05  Score=45.38  Aligned_cols=21  Identities=19%  Similarity=0.397  Sum_probs=18.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +|+++|++||||||++.+++.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999955554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=5e-05  Score=46.14  Aligned_cols=20  Identities=25%  Similarity=0.536  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q psy6968          27 LGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~   46 (93)
                      |+|+|++||||+||+.+++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999976654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=5.5e-05  Score=45.13  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++|++|+||||++.++..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999966544

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=5.1e-05  Score=45.82  Aligned_cols=21  Identities=19%  Similarity=0.442  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -++++||+|+||+||+.+++.
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999987775

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.42  E-value=6.9e-05  Score=43.86  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      --|++.|++||||||++ +.+...+
T Consensus         5 ~iI~l~G~~GsGKSTia-~~La~~l   28 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIA-EALANLP   28 (176)
T ss_dssp             EEEEEEECTTSCHHHHH-HHHHTCS
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHHh
Confidence            45778999999999999 6665553

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=6.2e-05  Score=45.18  Aligned_cols=23  Identities=22%  Similarity=0.301  Sum_probs=19.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..-++++|.+||||||++.+++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999977754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=6.3e-05  Score=45.01  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++|++||||||++..+..
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999955443

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=9.7e-05  Score=43.14  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-+++.|++||||||++..+..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5677899999999999965543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.36  E-value=6.9e-05  Score=44.17  Aligned_cols=20  Identities=30%  Similarity=0.587  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q psy6968          27 LGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.++|.+|+|||||+.+++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            46999999999999987764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=7.1e-05  Score=44.57  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=17.3

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +++++|++||||||.+.++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999995544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.32  E-value=0.00011  Score=44.53  Aligned_cols=22  Identities=36%  Similarity=0.581  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++++|++||||||+..+++.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999966554

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=9.6e-05  Score=44.38  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..|+++|++|+||||.+.+++.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999965544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.31  E-value=7.6e-05  Score=45.94  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=18.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -++++|..|+|||||+.+++.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999988874

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.30  E-value=0.00017  Score=46.74  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .||++||-++||||||++.+..
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            3799999999999999965543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.30  E-value=8.7e-05  Score=44.42  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=20.7

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++|+++|..++|||||+++++.
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHH
Confidence            37899999999999999988875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.00011  Score=44.23  Aligned_cols=21  Identities=24%  Similarity=0.349  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .-|+++|.+|+||||++.++.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568999999999999996554

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00012  Score=45.24  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=19.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .-++++||+||||+||+.+++..
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            45789999999999999777653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.26  E-value=0.00046  Score=44.29  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=36.3

Q ss_pred             eEEEECCCCCCHHHHHHHHHh--CCCCCC-----------CCC-------CcceeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMT--GAFLQE-----------ESP-------EGGRFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~--~~f~~~-----------~~~-------t~~~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .++++|..++|||||+.+++.  +.....           +.|       |...-...+.+++.  ++.++||.|..+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~--~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGH--RVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTE--EEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeeccccccccc--ceeEEccCchhhhh
Confidence            589999999999999987753  221110           000       10000124566665  56789999998874

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.24  E-value=8.1e-05  Score=46.49  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-+++.|++|||||+++..++.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999955544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00014  Score=44.86  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++||++|||||+++..++.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            5789999999999999976654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.22  E-value=0.00012  Score=43.18  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=17.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .++++|.+||||||+...+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999954433

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.21  E-value=0.00013  Score=43.12  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=17.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.++++|.+||||||+...++
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            357889999999999995543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00012  Score=44.15  Aligned_cols=22  Identities=14%  Similarity=0.315  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.++++|++||||||++.+++.
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999955544

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.21  E-value=0.00012  Score=42.86  Aligned_cols=20  Identities=15%  Similarity=0.154  Sum_probs=16.5

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -|++.|.+||||||++.++.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47788999999999996543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.18  E-value=0.00018  Score=41.84  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=16.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -|++.|++|+||||++..+..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            455669999999999954443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.18  E-value=0.00011  Score=45.60  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.++|.|++|+|||||+.+++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            4677899999999999987765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00016  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.202  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -.+++||++|||||+++..++..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHH
Confidence            57899999999999999766543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00092  Score=43.06  Aligned_cols=59  Identities=17%  Similarity=0.224  Sum_probs=37.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh--CCCCCC-----------CCCCc---c----eeEEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMT--GAFLQE-----------ESPEG---G----RFKKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~--~~f~~~-----------~~~t~---~----~~~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      .++++|-.|+|||||+.+++.  +.....           +.|-+   +    .....+.+++.  ++.+.||.|..+|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~--~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDH--RINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTE--EEEEECCCSSSSCS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCe--EEEEecCCchhhhH
Confidence            699999999999999988863  322110           00000   0    00124456664  66899999999985


Q ss_pred             C
Q psy6968          86 P   86 (93)
Q Consensus        86 ~   86 (93)
                      .
T Consensus        86 ~   86 (276)
T d2bv3a2          86 I   86 (276)
T ss_dssp             T
T ss_pred             H
Confidence            4

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.12  E-value=0.00016  Score=44.68  Aligned_cols=21  Identities=24%  Similarity=0.404  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.||+|+|||++++.++.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            589999999999999954443

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.00017  Score=42.76  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=18.8

Q ss_pred             eeeEEEECCCCCCHHHHHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+-|+|-|++||||||++.++.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3778899999999999996654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.11  E-value=3.2e-05  Score=49.01  Aligned_cols=57  Identities=19%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCCCCCCCC----ccee----EEEEEECCeEEEEEEEecCCCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFLQEESPE----GGRF----KKEVVIDGHSHLLLIRDEGVPPELQ   85 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~~~~~~t----~~~~----~~~~~~~g~~i~~~i~d~~g~~~~~   85 (93)
                      -..+++|.+|||||||++.++.+.-...-.-+    .|.+    ..-+..+|.    .+.||.|-..|.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            46789999999999999877765322211111    1222    111234542    366999977775

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0001  Score=43.88  Aligned_cols=21  Identities=14%  Similarity=0.219  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..|.++|.+||||||++..+.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            678899999999999995443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.08  E-value=0.00024  Score=43.26  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.|++-|++||||||.+.+++.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6788889999999999954443

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.03  E-value=0.00022  Score=44.12  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.+++.|++|+||||+++-++
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            468899999999999995444

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.01  E-value=0.00021  Score=43.07  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.++++|++||||||++.+++.
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999966655

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00024  Score=46.78  Aligned_cols=24  Identities=38%  Similarity=0.667  Sum_probs=21.1

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ....|++.|++|+|||||+.+++.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHH
Confidence            348999999999999999988864

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00039  Score=43.29  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=18.9

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +..++++|+.||||||.+-+++.
T Consensus        11 p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            37889999999999998766653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00036  Score=41.34  Aligned_cols=28  Identities=14%  Similarity=0.344  Sum_probs=23.1

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +.+|   .-+.+.|++|+|||+|+..++...
T Consensus        20 i~~G---~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETG---SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETT---SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCC---EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3455   688899999999999999888644

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.00028  Score=45.84  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      --++++||+|||||.|+..++.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            4678999999999999965543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.91  E-value=0.00035  Score=41.86  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=21.7

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      +..+..|++-|..||||||++ +.+...+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~-~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYL-NHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHH-HTTGGGT
T ss_pred             CCCceEEEEECCCCCCHHHHH-HHHHHHh
Confidence            344578999999999999999 5555443

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.90  E-value=0.00035  Score=43.01  Aligned_cols=28  Identities=21%  Similarity=0.375  Sum_probs=23.3

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ++++   .-++|.|++|+|||+|+.+|+...
T Consensus        33 lp~G---~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQ---AITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESS---EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCC---EEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3455   788999999999999999998643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.90  E-value=0.00041  Score=45.57  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.4

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ....+.+.|++|+|||||+.+++.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            348999999999999999988875

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00044  Score=42.03  Aligned_cols=22  Identities=32%  Similarity=0.622  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +-|++-|+.|+||||++..+..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            7889999999999999955543

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.89  E-value=0.0003  Score=41.31  Aligned_cols=19  Identities=21%  Similarity=0.230  Sum_probs=15.2

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q psy6968          27 LGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~   45 (93)
                      +++.|.+||||||++..+.
T Consensus         4 ivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4567999999999995543

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.88  E-value=9.8e-05  Score=45.96  Aligned_cols=23  Identities=43%  Similarity=0.780  Sum_probs=20.3

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHH
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +.+.++++|--+.|||||+-+++
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccEEEEEecCCCCHHHHHHHHH
Confidence            35899999999999999998775

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00035  Score=43.27  Aligned_cols=22  Identities=18%  Similarity=0.178  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..++.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999955544

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.88  E-value=0.00037  Score=42.82  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|++|+|||+++..++.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999955543

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00053  Score=42.61  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=19.4

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +..++++|++||||||.+-++..
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~   31 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLAR   31 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999998877764

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00036  Score=41.64  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=20.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .-+++-|+-|+|||||+.-++...
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            678999999999999996666544

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.84  E-value=0.00048  Score=42.82  Aligned_cols=24  Identities=17%  Similarity=0.241  Sum_probs=15.2

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+..++++|+.||||||.+-+++.
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~   34 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAY   34 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346788999999999998766653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.83  E-value=0.00063  Score=41.95  Aligned_cols=22  Identities=18%  Similarity=0.409  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..++.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999955443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.78  E-value=0.00047  Score=43.50  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|||||+++...+
T Consensus        41 ~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            569999999999999995554

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.00025  Score=45.15  Aligned_cols=17  Identities=41%  Similarity=0.575  Sum_probs=14.6

Q ss_pred             eEEEECCCCCCHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVH   42 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~   42 (93)
                      --+++|++|||||+++.
T Consensus        26 lnvlvG~NgsGKS~iL~   42 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIID   42 (308)
T ss_dssp             EEEEECCTTTCSTHHHH
T ss_pred             eEEEECCCCCcHHHHHH
Confidence            35789999999999974

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0015  Score=43.22  Aligned_cols=21  Identities=19%  Similarity=0.532  Sum_probs=19.2

Q ss_pred             e-eEEEECCCCCCHHHHHHHHH
Q psy6968          25 L-RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~-kv~lvG~~g~GKtsl~~r~~   45 (93)
                      + .|+++|..++|||||+.+++
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHH
Confidence            5 49999999999999999886

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.0004  Score=42.92  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=18.4

Q ss_pred             eEEEECCCCCCHHHHHHHHHhC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .+++.|++|+||||++..++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999655543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00044  Score=42.12  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .-+.+.|++|+|||+|+..++...
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            678899999999999999887643

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.72  E-value=0.0003  Score=43.73  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=15.5

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q psy6968          27 LGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~   46 (93)
                      +++.|++|+|||+++..++.
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999955443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.72  E-value=0.0012  Score=42.13  Aligned_cols=31  Identities=23%  Similarity=0.474  Sum_probs=24.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCC-CCCCCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAF-LQEESPE   56 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f-~~~~~~t   56 (93)
                      +++|+|+-.+|||||++.+++..+ +....|+
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~   59 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIV   59 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCS
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCCcCCCCCCcc
Confidence            799999999999999999988775 3333343

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.00061  Score=40.70  Aligned_cols=23  Identities=30%  Similarity=0.652  Sum_probs=19.1

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++-+++.|..|+||||++ +++..
T Consensus         3 p~IIgitG~~gSGKstva-~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVA-ALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHH-HHHHH
T ss_pred             CEEEEEECCCCCCHHHHH-HHHHH
Confidence            478899999999999999 55543

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.00057  Score=41.86  Aligned_cols=20  Identities=30%  Similarity=0.365  Sum_probs=16.9

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++.|++|+||||++..++
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            48899999999999995444

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00059  Score=41.74  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=17.5

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|++|+||||+++.++.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            488999999999999955553

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.70  E-value=0.0006  Score=42.21  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-++++|+.||||||.+-+++.
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~   28 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGR   28 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999998766653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00084  Score=41.09  Aligned_cols=28  Identities=21%  Similarity=0.301  Sum_probs=23.3

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      ++++   .-+++.|++|+|||+|+..++...
T Consensus        34 ip~G---~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESM---AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSS---EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCC---EEEEEECCCCCCHHHHHHHHHHHH
Confidence            3555   688999999999999999998643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00044  Score=46.51  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=17.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.+++||++|||||+++..++
T Consensus        44 ~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHH
Confidence            567999999999999885333

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00078  Score=40.63  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=16.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -|++.|++|+||+|+..++..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            456669999999999944443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=9.4e-05  Score=43.63  Aligned_cols=18  Identities=22%  Similarity=0.270  Sum_probs=15.2

Q ss_pred             eEEEECCCCCCHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHR   43 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r   43 (93)
                      ..+|+|++|+||||++.-
T Consensus        26 ~tvi~G~NGsGKStil~A   43 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAA   43 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHH
Confidence            556789999999999953

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.59  E-value=0.00079  Score=41.61  Aligned_cols=22  Identities=23%  Similarity=0.203  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      --++++|++||||||.+-+++.
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~   32 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLAL   32 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3467899999999998876653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.59  E-value=0.00085  Score=40.71  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=24.2

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      +.++   .-++|.|++|+|||+|+..++....
T Consensus        31 l~~G---~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          31 LESQ---SVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EETT---EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             ccCC---eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4556   7889999999999999999987554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.58  E-value=0.0084  Score=36.15  Aligned_cols=25  Identities=32%  Similarity=0.716  Sum_probs=21.8

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++.+.++++|-.++|||||+.+++.
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            4458999999999999999988875

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00086  Score=42.31  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..++.
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3589999999999999955553

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00085  Score=40.97  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+++.|++|+|||+++..++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            488999999999999966654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=96.54  E-value=0.0039  Score=38.60  Aligned_cols=22  Identities=36%  Similarity=0.606  Sum_probs=20.0

Q ss_pred             eeeEEEECCCCCCHHHHHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++++|-.++|||||+.+++
T Consensus         9 ~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           9 MLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEEcCCCCCHHHHHHHHH
Confidence            4789999999999999998886

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.52  E-value=0.0009  Score=41.07  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .-+++.|++|+|||+|+.+++..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            68889999999999999888765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.50  E-value=0.0011  Score=40.08  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .-+++.|++|+||||++..++..-
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            678999999999999998888654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.44  E-value=0.001  Score=45.39  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.++++||.|||||-|+.+++.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999976654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0012  Score=41.91  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.+++.|++|||||+++..++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHH
Confidence            458999999999999995444

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.40  E-value=0.0012  Score=39.89  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=21.4

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +++|   .-+++.|++|+|||+|+..++.
T Consensus        23 i~~G---~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          23 LPIG---RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EETT---SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcCC---eEEEEEeCCCCCHHHHHHHHHH
Confidence            4566   7888999999999999987653

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.36  E-value=0.0019  Score=38.82  Aligned_cols=24  Identities=25%  Similarity=0.616  Sum_probs=20.9

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+.++++|-.++|||||+.+++.
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHh
Confidence            458899999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0016  Score=42.57  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHH
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      ++.++-|+|.|++||||||++..+
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L  100 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVL  100 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHH
Confidence            345589999999999999998433

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.0014  Score=41.37  Aligned_cols=22  Identities=14%  Similarity=0.252  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.+++.|++|+|||+++..++.
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4689999999999999954443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.30  E-value=0.0014  Score=41.68  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..++|+|..|+|||||+..+..
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999966654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.29  E-value=0.0014  Score=39.68  Aligned_cols=24  Identities=17%  Similarity=0.224  Sum_probs=20.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .-+++.|++|+|||+++..++..-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            678999999999999998887643

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.27  E-value=0.0018  Score=41.36  Aligned_cols=24  Identities=33%  Similarity=0.592  Sum_probs=21.6

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      +++|||+-.+|||||++.+++..+
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            789999999999999988887665

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0031  Score=40.40  Aligned_cols=59  Identities=20%  Similarity=0.204  Sum_probs=37.6

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC--CCCC--C-CCcceeEEEEEE-CCeEEEEEEEecCCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF--LQEE--S-PEGGRFKKEVVI-DGHSHLLLIRDEGVPPE   83 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f--~~~~--~-~t~~~~~~~~~~-~g~~i~~~i~d~~g~~~   83 (93)
                      .-|.++|+.++|||+|++++++..+  ....  . .|.|-+.....+ ++....+-++||.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            4677999999999999999887653  2211  1 224433222222 44556678899988543

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.25  E-value=0.0023  Score=39.17  Aligned_cols=21  Identities=38%  Similarity=0.438  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+.+.|.+|+|||||+..+.
T Consensus        25 ~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          25 LTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999995554

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0023  Score=38.90  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             eeeEEEECCCCCCHHHHHHHHHh
Q psy6968          24 DLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++-|+|.|..|+||||++ +++.
T Consensus         3 k~iIgitG~igSGKStv~-~~l~   24 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVA-NAFA   24 (208)
T ss_dssp             CEEEEEECCTTSCHHHHH-HHHH
T ss_pred             CEEEEEECCCcCCHHHHH-HHHH
Confidence            367889999999999999 5554

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0026  Score=38.56  Aligned_cols=21  Identities=29%  Similarity=0.675  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +-+++.|..||||||++ +++.
T Consensus         3 ~iIgITG~igSGKStv~-~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIA-NLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHH
Confidence            67899999999999999 5554

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.16  E-value=0.0023  Score=42.53  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      -.++++||.|||||-|+.+++.
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHh
Confidence            5699999999999999966543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.13  E-value=0.0019  Score=38.70  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=20.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .-+++.|++|+|||+++..++..-
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            689999999999999998877643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0014  Score=42.98  Aligned_cols=17  Identities=35%  Similarity=0.565  Sum_probs=14.6

Q ss_pred             EEEECCCCCCHHHHHHH
Q psy6968          27 LGIVGSLASGKSALVHR   43 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r   43 (93)
                      -+++|++|+|||+++.-
T Consensus        28 ~~i~G~NGsGKS~ileA   44 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDA   44 (427)
T ss_dssp             EEEECSTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            56889999999999854

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.002  Score=40.87  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      --+++.|++|+|||+++..++.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            4689999999999999955543

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0028  Score=37.91  Aligned_cols=20  Identities=30%  Similarity=0.463  Sum_probs=16.6

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .|++-|..||||||++..+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47889999999999995443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.99  E-value=0.001  Score=43.12  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..++++|++|+|||+++.++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            469999999999999996654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0039  Score=40.45  Aligned_cols=21  Identities=14%  Similarity=0.200  Sum_probs=17.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.++++|++|||||.|+..+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHH
Confidence            468899999999999995443

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.96  E-value=0.0044  Score=39.96  Aligned_cols=24  Identities=25%  Similarity=0.153  Sum_probs=19.4

Q ss_pred             CCCeeeEEEECCCCCCHHHHHHHH
Q psy6968          21 DVPDLRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        21 ~~~~~kv~lvG~~g~GKtsl~~r~   44 (93)
                      +...+-|+|-|..||||||++..+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            344588999999999999998433

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0015  Score=39.84  Aligned_cols=25  Identities=28%  Similarity=0.482  Sum_probs=19.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      -.|++-|..||||||++ +.+...+.
T Consensus         3 k~I~ieG~dGsGKST~~-~~L~~~l~   27 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFV-NILKQLCE   27 (241)
T ss_dssp             EEEEEECSTTSSHHHHH-TTTGGGCT
T ss_pred             CEEEEECCCCCCHHHHH-HHHHHHHh
Confidence            46889999999999999 55555443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.81  E-value=0.0045  Score=38.66  Aligned_cols=26  Identities=15%  Similarity=0.107  Sum_probs=21.3

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +.+|   .-+++.|++|+|||+|+..++.
T Consensus        32 ~~~G---~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          32 ARGG---EVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             BCTT---CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCC---eEEEEEeCCCCCHHHHHHHHHH
Confidence            4566   7889999999999999876653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.0058  Score=37.15  Aligned_cols=27  Identities=19%  Similarity=0.074  Sum_probs=21.0

Q ss_pred             CCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          20 RDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        20 ~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+.....+++.|++|+|||+++..++.
T Consensus        20 ~~~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          20 AGRGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence            343345699999999999999976554

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0044  Score=37.35  Aligned_cols=21  Identities=19%  Similarity=0.170  Sum_probs=16.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .-|++-|..||||||++.++.
T Consensus         3 kfIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            357788999999999995544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0049  Score=37.60  Aligned_cols=20  Identities=20%  Similarity=0.242  Sum_probs=16.1

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      .-|++-|..|+||||++..+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L   23 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKL   23 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            55777899999999988443

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.63  E-value=0.0039  Score=40.72  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=18.0

Q ss_pred             eEEEECCCCCCHHHHHHHHHhCC
Q psy6968          26 RLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+++.|+.|+||||++. .+-+.
T Consensus       168 nili~G~tgSGKTT~l~-al~~~  189 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIK-SIMEF  189 (323)
T ss_dssp             CEEEEESTTSSHHHHHH-HHGGG
T ss_pred             CEEEEeeccccchHHHH-HHhhh
Confidence            48999999999999995 44444

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.60  E-value=0.0038  Score=39.14  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +..+.++++|-.++|||||+-+++
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHH
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHH
Confidence            345789999999999999998875

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.0052  Score=37.96  Aligned_cols=21  Identities=14%  Similarity=0.216  Sum_probs=17.3

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+++.|++|+|||+++..++
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHH
Confidence            457899999999999995544

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.42  E-value=0.0055  Score=40.62  Aligned_cols=21  Identities=24%  Similarity=0.339  Sum_probs=17.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -.+++.||+|+|||+++..++
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578999999999999986544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.39  E-value=0.0056  Score=40.10  Aligned_cols=20  Identities=35%  Similarity=0.431  Sum_probs=15.6

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .+++.|++|||||.|+.-+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala  144 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALG  144 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            35567999999999995444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0061  Score=37.86  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-.++.|++|+|||+|+..++.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            5677999999999999976643

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.0042  Score=38.33  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q psy6968          27 LGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .++-|-.|+|||||+.+++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            567888999999999998875

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0079  Score=38.85  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHh
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ++-+|   -+++++|++|+|||+|+...+.
T Consensus        39 PigrG---Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          39 PIGRG---QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CCBTT---CEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCC---CeeeEeCCCCCCHHHHHHHHHH
Confidence            45677   7999999999999999976664

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.13  E-value=0.0026  Score=41.18  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=14.1

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      -|+|.|++||||||++..+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999996543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0055  Score=37.46  Aligned_cols=25  Identities=40%  Similarity=0.680  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAFL   50 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f~   50 (93)
                      -.+++=|..||||||++ +.+...+.
T Consensus         3 k~IviEG~~GsGKST~~-~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFV-KLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHH-HHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHH-HHHHHHHh
Confidence            35788899999999999 55544443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.80  E-value=0.0092  Score=37.75  Aligned_cols=18  Identities=28%  Similarity=0.396  Sum_probs=14.9

Q ss_pred             eEEEECCCCCCHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHR   43 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r   43 (93)
                      .++|.|.+|+||||.+..
T Consensus        26 ~~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             CEEEEECTTSCHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHH
Confidence            478999999999976643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.012  Score=35.76  Aligned_cols=21  Identities=19%  Similarity=0.137  Sum_probs=17.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .-|++-|..||||||++..+.
T Consensus         4 k~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           4 KLILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHH
Confidence            568899999999999994443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.64  E-value=0.011  Score=37.05  Aligned_cols=17  Identities=18%  Similarity=0.311  Sum_probs=14.2

Q ss_pred             eEEEECCCCCCHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVH   42 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~   42 (93)
                      .++|+|.+|+|||+.+.
T Consensus        16 ~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEEECCCTTSCHHHHHH
T ss_pred             CEEEEeeCCccHHHHHH
Confidence            47889999999998654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.41  E-value=0.02  Score=37.05  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=17.0

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .-++++|++|+|||.++..+.
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHH
Confidence            357889999999999995444

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.33  E-value=0.016  Score=35.35  Aligned_cols=19  Identities=26%  Similarity=0.373  Sum_probs=16.4

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      .|++.|..||||||.+ +++
T Consensus         3 iIgiTG~igSGKsTva-~~l   21 (241)
T d1deka_           3 LIFLSGVKRSGKDTTA-DFI   21 (241)
T ss_dssp             EEEEECCTTSSHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            5789999999999999 554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.28  E-value=0.018  Score=35.17  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=16.1

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q psy6968          27 LGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~   45 (93)
                      +.+.|++|+|||-|+.-.+
T Consensus        39 l~l~G~~G~GKTHLl~A~~   57 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAG   57 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999995443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.20  E-value=0.017  Score=38.49  Aligned_cols=23  Identities=22%  Similarity=0.150  Sum_probs=19.8

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      =-+++.|+.|+||||.+..++..
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHhhh
Confidence            35899999999999999877764

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.16  E-value=0.019  Score=36.79  Aligned_cols=28  Identities=21%  Similarity=0.527  Sum_probs=23.2

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++-+|   -|++++|++|+|||+|+...+.+
T Consensus        64 pigkG---Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          64 PYAKG---GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEETT---CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cccCC---CEEEeeCCCCCCHHHHHHHHHHH
Confidence            34566   69999999999999999888754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.023  Score=35.93  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      .-+.+.|++|+|||+|+..++..
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHH
Confidence            56779999999999999877643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.08  E-value=0.016  Score=38.18  Aligned_cols=23  Identities=26%  Similarity=0.356  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -.++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            46899999999999998666644

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.05  E-value=0.019  Score=35.58  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=17.2

Q ss_pred             eEEEECCCCCCHHHHHHHHHh
Q psy6968          26 RLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      +|++.|-.||||||++..+..
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~   23 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTS   23 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            577889999999999966543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.89  E-value=0.023  Score=37.14  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGAF   49 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~f   49 (93)
                      .+|+|=|.-|+||||++ +.+...+
T Consensus         5 lrI~IEG~iGsGKTTl~-~~La~~l   28 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTT-QLLVALG   28 (329)
T ss_dssp             EEEEECSCTTSSHHHHH-HHHTC--
T ss_pred             eEEEEECCcCCCHHHHH-HHHHHHh
Confidence            57899999999999999 5555443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.71  E-value=0.03  Score=34.76  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             CeeeEEEECCCCCCHHHHHHHHH
Q psy6968          23 PDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        23 ~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+.++++|-.++|||||+-+++
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHH
T ss_pred             CccEEEEEeCCCCCHHHHHHHHH
Confidence            34799999999999999998886

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.47  E-value=0.031  Score=34.80  Aligned_cols=21  Identities=24%  Similarity=0.384  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..|++.|+.|+||+.++ +.+.
T Consensus        24 ~pvlI~Ge~GtGK~~~A-~~ih   44 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVA-RLIH   44 (247)
T ss_dssp             SCEEEECSTTSSHHHHH-HHHH
T ss_pred             CCEEEECCCCcCHHHHH-HHHH
Confidence            67899999999999999 6664

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.32  E-value=0.036  Score=36.21  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      .+|+|=|.-||||||++ +.+...
T Consensus         7 ~rI~iEG~iGsGKSTl~-~~L~~~   29 (333)
T d1p6xa_           7 VRIYLDGVYGIGKSTTG-RVMASA   29 (333)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHSG
T ss_pred             EEEEEECCccCCHHHHH-HHHHHH
Confidence            78999999999999999 555443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.75  E-value=0.041  Score=34.44  Aligned_cols=20  Identities=25%  Similarity=0.348  Sum_probs=16.2

Q ss_pred             eEEEECCCCCCHHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +|++-|-.||||||++..+.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            56778999999999886554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.044  Score=32.32  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=16.7

Q ss_pred             eeEEEECCC-CCCHHHHHHHHH
Q psy6968          25 LRLGIVGSL-ASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~-g~GKtsl~~r~~   45 (93)
                      -++.|.|-. ||||||+..-++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            378899996 999999885444

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.044  Score=35.99  Aligned_cols=20  Identities=25%  Similarity=0.295  Sum_probs=16.1

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      -..+|.|++|+|||+++...
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            35778999999999987543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.085  Score=32.57  Aligned_cols=19  Identities=32%  Similarity=0.345  Sum_probs=16.1

Q ss_pred             eEEEECCCCCCHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~   44 (93)
                      -+++-|++.+|||+++...
T Consensus        43 ~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHH
Confidence            4788999999999999643

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.41  E-value=0.028  Score=36.71  Aligned_cols=22  Identities=27%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .+|+|=|.-|+||||++..+..
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999954443

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.056  Score=33.40  Aligned_cols=19  Identities=16%  Similarity=0.312  Sum_probs=14.1

Q ss_pred             eEEEECCCCCCHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~   44 (93)
                      -+++.|..||||||+...+
T Consensus        22 iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          22 LIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3455699999999986433

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.99  E-value=0.057  Score=33.08  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=18.2

Q ss_pred             eeeEEEECCCCCCHHHHHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      +-.+++.|++++|||.++..++
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~   74 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFI   74 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            3789999999999998886443

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.96  E-value=0.063  Score=33.21  Aligned_cols=20  Identities=20%  Similarity=0.129  Sum_probs=15.4

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      --+++.|-.||||||+...+
T Consensus         9 ~~i~~sGKGGVGKTTvaa~l   28 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCAT   28 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEECCCcChHHHHHHHH
Confidence            35568999999999976433

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.87  E-value=0.05  Score=34.84  Aligned_cols=28  Identities=21%  Similarity=0.362  Sum_probs=22.4

Q ss_pred             eeCCCCCeeeEEEECCCCCCHHHHHHHHHhC
Q psy6968          17 TLARDVPDLRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        17 ~~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++-+|   -|++++|++|+|||+|+...+.+
T Consensus        64 pig~G---Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          64 PIGRG---QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CCBTT---CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCC---CEEEeecCCCCChHHHHHHHHHh
Confidence            34556   79999999999999998766643

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.62  E-value=0.091  Score=33.24  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-..+.|++++|||+|+...+.
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHHH
Confidence            5677899999999999877663

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.02  E-value=0.078  Score=33.73  Aligned_cols=28  Identities=25%  Similarity=0.364  Sum_probs=22.0

Q ss_pred             eCCCCCeeeEEEECCCCCCHHHHHHHHHhCC
Q psy6968          18 LARDVPDLRLGIVGSLASGKSALVHRFMTGA   48 (93)
Q Consensus        18 ~~~~~~~~kv~lvG~~g~GKtsl~~r~~~~~   48 (93)
                      +-+|   -|++++|++|+|||+|+...+...
T Consensus        64 ig~G---Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          64 VGRG---QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBTT---CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ccCC---ceEeeccCCCCChHHHHHHHHhhh
Confidence            4456   689999999999999996655443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.90  E-value=0.099  Score=32.11  Aligned_cols=19  Identities=26%  Similarity=0.350  Sum_probs=16.2

Q ss_pred             eEEEECCCCCCHHHHHHHH
Q psy6968          26 RLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~~r~   44 (93)
                      .+++-|++.+|||+++...
T Consensus        37 ~~iiTGpN~~GKSt~lk~i   55 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQT   55 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhh
Confidence            4789999999999999643

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.86  E-value=0.094  Score=33.11  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .-..+-|++++|||+|+..++.
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHH
Confidence            4677899999999999987764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.70  E-value=0.079  Score=29.29  Aligned_cols=23  Identities=22%  Similarity=0.114  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      -..++.++.|+|||.++..++..
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~   31 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAA   31 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            34578999999999988666543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.49  E-value=0.19  Score=28.26  Aligned_cols=20  Identities=15%  Similarity=0.207  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCCHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRF   44 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~   44 (93)
                      +.+++-|.+|+||++|+.-+
T Consensus         7 f~i~~tg~~~~gk~~ia~al   26 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIAL   26 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHH
Confidence            89999999999999999433

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=89.15  E-value=0.2  Score=31.41  Aligned_cols=24  Identities=13%  Similarity=0.227  Sum_probs=19.0

Q ss_pred             CCeeeEEEECCCCCCHHHHHHHHH
Q psy6968          22 VPDLRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        22 ~~~~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ..+..+++.|+++.|||+++..+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~  125 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHH
Confidence            344788899999999999995443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.35  E-value=0.081  Score=28.74  Aligned_cols=17  Identities=12%  Similarity=0.010  Sum_probs=13.8

Q ss_pred             eeEEEECCCCCCHHHHH
Q psy6968          25 LRLGIVGSLASGKSALV   41 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~   41 (93)
                      ..+++.++.|+|||..+
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            67788899999999433

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=0.15  Score=33.06  Aligned_cols=17  Identities=24%  Similarity=0.196  Sum_probs=14.7

Q ss_pred             eeEEEECCCCCCHHHHH
Q psy6968          25 LRLGIVGSLASGKSALV   41 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~   41 (93)
                      -..++.|.+|.|||||.
T Consensus        15 ~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             CEEEEECSTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            45579999999999987

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.20  E-value=0.18  Score=29.97  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHhC
Q psy6968          27 LGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ++|+|...+|||.++.+++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            578999999999999887654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.02  E-value=0.22  Score=29.70  Aligned_cols=22  Identities=14%  Similarity=0.011  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      ..+++-|++|+|||+++..+..
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999965544

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.62  E-value=0.47  Score=26.54  Aligned_cols=20  Identities=35%  Similarity=0.398  Sum_probs=16.7

Q ss_pred             EEEECCCCCCHHHHHHHHHh
Q psy6968          27 LGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~~   46 (93)
                      -+++|+-.+||||-+.+.+.
T Consensus         5 ~li~GpMfsGKTt~Li~~~~   24 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVR   24 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHH
Confidence            46789999999998887664

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=86.50  E-value=0.26  Score=34.90  Aligned_cols=18  Identities=22%  Similarity=0.233  Sum_probs=15.7

Q ss_pred             eeEEEECCCCCCHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVH   42 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~   42 (93)
                      -.|++.|++|+|||.-.+
T Consensus        87 QsIiisGeSGsGKTe~~k  104 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASK  104 (684)
T ss_dssp             EEEEEECSTTSSHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHH
Confidence            579999999999997664

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.28  E-value=0.15  Score=33.07  Aligned_cols=17  Identities=24%  Similarity=0.196  Sum_probs=14.9

Q ss_pred             eeEEEECCCCCCHHHHH
Q psy6968          25 LRLGIVGSLASGKSALV   41 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~   41 (93)
                      -..++.|.+|.|||||.
T Consensus        15 ~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             CEEEEEECTTSCHHHHT
T ss_pred             CEEEEEccCCCCccccc
Confidence            45689999999999987

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.27  E-value=0.31  Score=27.71  Aligned_cols=22  Identities=36%  Similarity=0.320  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHHh
Q psy6968          25 LRLGIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~   46 (93)
                      .--+++|+-.+||||-+.|.+.
T Consensus         8 ~l~lI~GpMfSGKTteLi~~~~   29 (141)
T d1xx6a1           8 WVEVIVGPMYSGKSEELIRRIR   29 (141)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEeccccHHHHHHHHHHH
Confidence            3445689999999998877664

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.80  E-value=0.2  Score=32.57  Aligned_cols=17  Identities=24%  Similarity=0.194  Sum_probs=14.9

Q ss_pred             eeEEEECCCCCCHHHHH
Q psy6968          25 LRLGIVGSLASGKSALV   41 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~   41 (93)
                      -..++.|.+|.|||||.
T Consensus        15 d~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             CEEEEEccCCCCcccce
Confidence            45679999999999998

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=85.76  E-value=0.3  Score=34.81  Aligned_cols=18  Identities=28%  Similarity=0.316  Sum_probs=15.7

Q ss_pred             eeEEEECCCCCCHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVH   42 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~   42 (93)
                      -.|++.|++|+|||.-..
T Consensus       126 QsIiisGeSGaGKTe~~k  143 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTK  143 (712)
T ss_dssp             EEEEEECSTTSSHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHH
Confidence            689999999999997664

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.35  E-value=0.32  Score=34.56  Aligned_cols=18  Identities=17%  Similarity=0.200  Sum_probs=15.6

Q ss_pred             eeEEEECCCCCCHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVH   42 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~   42 (93)
                      -.|++-|++|+|||.-.+
T Consensus        92 Q~IiisGeSGaGKTe~~k  109 (710)
T d1br2a2          92 QSILCTGESGAGKTENTK  109 (710)
T ss_dssp             EEEEEECSTTSSHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHH
Confidence            579999999999998653

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.34  E-value=0.5  Score=27.83  Aligned_cols=19  Identities=16%  Similarity=0.188  Sum_probs=14.2

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q psy6968          27 LGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        27 v~lvG~~g~GKtsl~~r~~   45 (93)
                      .+.-|..||||||+...+.
T Consensus         5 av~s~KGGvGKTtia~nlA   23 (232)
T d1hyqa_           5 TVASGKGGTGKTTITANLG   23 (232)
T ss_dssp             EEEESSSCSCHHHHHHHHH
T ss_pred             EEECCCCCChHHHHHHHHH
Confidence            3444889999999986543

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.73  E-value=0.43  Score=27.60  Aligned_cols=16  Identities=25%  Similarity=0.167  Sum_probs=13.2

Q ss_pred             eEEEECCCCCCHHHHH
Q psy6968          26 RLGIVGSLASGKSALV   41 (93)
Q Consensus        26 kv~lvG~~g~GKtsl~   41 (93)
                      .++++++.|+|||.++
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            4678899999999754

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=84.18  E-value=0.33  Score=34.96  Aligned_cols=18  Identities=22%  Similarity=0.296  Sum_probs=15.1

Q ss_pred             eeEEEECCCCCCHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVH   42 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~   42 (93)
                      -.|++.|++|+|||.-..
T Consensus       124 QsIiisGeSGaGKTe~~K  141 (794)
T d2mysa2         124 QSILITGESGAGKTVNTK  141 (794)
T ss_dssp             EEEEEEECTTSCHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHH
Confidence            579999999999996553

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=83.95  E-value=0.4  Score=34.50  Aligned_cols=18  Identities=22%  Similarity=0.244  Sum_probs=15.3

Q ss_pred             eeeEEEECCCCCCHHHHH
Q psy6968          24 DLRLGIVGSLASGKSALV   41 (93)
Q Consensus        24 ~~kv~lvG~~g~GKtsl~   41 (93)
                      .-.|++.|++|+|||.-.
T Consensus       121 nQ~IiisGESGaGKTe~~  138 (789)
T d1kk8a2         121 NQSCLITGESGAGKTENT  138 (789)
T ss_dssp             EEEEEEECSTTSSHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHH
Confidence            368999999999999664

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=83.95  E-value=0.46  Score=29.23  Aligned_cols=23  Identities=17%  Similarity=0.184  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCCHHHHHHHHHhC
Q psy6968          25 LRLGIVGSLASGKSALVHRFMTG   47 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~~~   47 (93)
                      ...++.|+.|+|||-+..+.+..
T Consensus        77 ~~~LL~GdvGsGKT~V~~~a~~~   99 (233)
T d2eyqa3          77 MDRLVCGDVGFGKTEVAMRAAFL   99 (233)
T ss_dssp             CEEEEECCCCTTTHHHHHHHHHH
T ss_pred             cCeEEEcCCCCCcHHHHHHHHHH
Confidence            57789999999999887766543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=83.93  E-value=0.46  Score=26.82  Aligned_cols=19  Identities=32%  Similarity=0.385  Sum_probs=14.8

Q ss_pred             EEECCCCCCHHHHHHHHHh
Q psy6968          28 GIVGSLASGKSALVHRFMT   46 (93)
Q Consensus        28 ~lvG~~g~GKtsl~~r~~~   46 (93)
                      +++|+-.+||||-+.|.+.
T Consensus         6 ~i~GpMfsGKTteLi~~~~   24 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLH   24 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHH
Confidence            5689999999996655553

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.66  E-value=0.42  Score=29.97  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=16.5

Q ss_pred             eeEEEECCCCCCHHHHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVHRFM   45 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~r~~   45 (93)
                      ...++.|+.|+|||-.....+
T Consensus       105 m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3         105 MNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             CCCEEECCSSSSHHHHHHHHH
T ss_pred             ceeeeeccccccccHHHHHHH
Confidence            567899999999997665444

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.40  E-value=0.6  Score=27.45  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=14.5

Q ss_pred             EEEE-CCCCCCHHHHHHHHH
Q psy6968          27 LGIV-GSLASGKSALVHRFM   45 (93)
Q Consensus        27 v~lv-G~~g~GKtsl~~r~~   45 (93)
                      |++. +..||||||+...+.
T Consensus         5 Iav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHH
Confidence            4455 778999999987654

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=82.63  E-value=0.53  Score=33.47  Aligned_cols=18  Identities=17%  Similarity=0.278  Sum_probs=15.5

Q ss_pred             eeEEEECCCCCCHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVH   42 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~   42 (93)
                      -.|++.|++|+|||.-..
T Consensus        95 Q~IiisGeSGsGKTe~~k  112 (730)
T d1w7ja2          95 QSIIVSGESGAGKTVSAK  112 (730)
T ss_dssp             EEEEEECSTTSSHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHH
Confidence            679999999999997654

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.85  E-value=0.48  Score=30.74  Aligned_cols=18  Identities=22%  Similarity=0.095  Sum_probs=14.6

Q ss_pred             eeEEEECCCCCCHHHHHH
Q psy6968          25 LRLGIVGSLASGKSALVH   42 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~~   42 (93)
                      -.++|.+.+|+|||+.+.
T Consensus        17 g~~lv~A~AGsGKT~~l~   34 (485)
T d1w36b1          17 GERLIEASAGTGKTFTIA   34 (485)
T ss_dssp             SCEEEECCTTSCHHHHHH
T ss_pred             CCeEEEEcCchHHHHHHH
Confidence            468888999999997653

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.65  E-value=0.21  Score=29.40  Aligned_cols=17  Identities=29%  Similarity=0.276  Sum_probs=14.6

Q ss_pred             eeEEEECCCCCCHHHHH
Q psy6968          25 LRLGIVGSLASGKSALV   41 (93)
Q Consensus        25 ~kv~lvG~~g~GKtsl~   41 (93)
                      -.+++.++.|+|||..+
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            46899999999999764