Psyllid ID: psy7091

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MVYATESKHKKNGEIVCHRARDLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRYR
Secondary Structure (PSIPRED)
ccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEcccccEEEEccccccccccccHHHHHccccccccccHHHHHHHHHHHHHcccccEEEccHHcHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEcccccEEEEEEcHHHcccccHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvyateskhkkngeivchrardlqygrrpslpvrvvpafslqthqkntitgappkcvpkdktydytSMFRtyysrgdfpiamefksvgnkiswkediktLNYQYYLPIffdglreteypykFFASKGIHDLLengkdkivpvlphlilpiknalstrnpeVICETLKVLQHLVTsssmvgealVPYYKQIlphlnmykdlnnryr
Flexible Loop (DISEMBL)
mvyateskhkkngeivchrardlqygrrpsLPVRVVPAFSLqthqkntitgappkcvpkdkTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQilphlnmykdlnnryr
Low Complexity Region (SEG)
MVYATESKHKKNGEIVCHRARDLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRYR
Disordered region (IsUnstruct)
**************IVCHRARDLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKD******
Disordered Region (DISOPRED)
*****************************************************************TSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDL*****
Disordered Region (DISEMBL)
***********NGEIVCHRARDLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRYR
Disordered Region (DISPRO)
************GE**C*R*R******************************APPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVYATESKHKKNGEIVCHRARDLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q96M98	296	Parkin coregulated gene p	yes	N/A	0.829	0.574	0.558	8e-53
Q9DAK2	241	Parkin coregulated gene p	yes	N/A	0.814	0.692	0.556	1e-51
Q8N7B6	248	PACRG-like protein OS=Hom	no	N/A	0.614	0.508	0.328	1e-11
Q9D3X5	248	PACRG-like protein OS=Mus	no	N/A	0.556	0.459	0.327	1e-09

>sp|Q96M98|PACRG_HUMAN Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2

 Score =  206 bits (524), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 127/170 (74%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 157

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY 204
           + RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N  Y
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSY 207

Suppresses cell death induced by accumulation of unfolded Pael receptor (Pael-R, a substrate of Parkin). Facilitates the formation of inclusions consisting of Pael-R, molecular chaperones, protein degradation molecules and itself when proteasome is inhibited. May play an important role in the formation of Lewy bodies and protection of dopaminergic neurons against Parkinson disease.
Homo sapiens (taxid: 9606)

>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog OS=Mus musculus GN=Pacrg PE=1 SV=1

 Score =  202 bits (514), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/167 (55%), Positives = 125/167 (74%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR  Y RGDFPIA+E  S GNKI+WK
Sbjct: 22  VSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTTFRKCYERGDFPIALEHDSKGNKIAWK 81

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 82  VEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNAL 141

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
           + RN ++IC TLKVLQHLV SS MVGEAL+PYY+QILP LN++K++N
Sbjct: 142 NLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMN 188

Suppresses cell death induced by accumulation of unfolded Pael receptor (Pael-R, a substrate of Parkin). Facilitates the formation of inclusions consisting of Pael-R, molecular chaperones, protein degradation molecules and itself when proteasome is inhibited.

Mus musculus (taxid: 10090)

>sp|Q8N7B6|PACRL_HUMAN PACRG-like protein OS=Homo sapiens GN=PACRGL PE=1 SV=2

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 67  SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 126
           S F   YS+G  P  +   SV +++ W+   ++L++   L    +GLRET++PY F + +
Sbjct: 78  SAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETKHPYTFVSKE 137

Query: 127 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 184
           G  +LL  +   +K +P+LP LI  +K AL   + EV    L  L  L   S +VG +L 
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQL---SVVVGPSLN 194

Query: 185 PYYKQILPHLN 195
            + K +L  L+
Sbjct: 195 DHLKHLLTSLS 205

Homo sapiens (taxid: 9606)

>sp|Q9D3X5|PACRL_MOUSE PACRG-like protein OS=Mus musculus GN=Pacrgl PE=1 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 67  SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 126
           + F   YS+G  P  +   SV +++ W+   + L +   L    +GLRET++PY F + +
Sbjct: 78  TAFAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKE 137

Query: 127 GIHDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 183
           G  +LL  +   +K +P+LP LI  +K AL   + EV    L  L  L   S +VG +L
Sbjct: 138 GFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQL---SVVVGPSL 193

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
118088298	254	PREDICTED: parkin coregulated gene prote	0.819	0.661	0.565	3e-51
122939204	296	parkin coregulated gene protein isoform	0.829	0.574	0.558	4e-51
397499067	280	PREDICTED: parkin coregulated gene prote	0.829	0.607	0.558	5e-51
345305417	258	PREDICTED: parkin coregulated gene prote	0.824	0.655	0.550	7e-51
55925315	232	parkin co-regulated gene protein [Danio	0.8	0.706	0.567	8e-51
16552916	296	unnamed protein product [Homo sapiens]	0.829	0.574	0.552	8e-51
126310753	257	PREDICTED: parkin coregulated gene prote	0.839	0.669	0.553	8e-51
395839086	296	PREDICTED: parkin coregulated gene prote	0.819	0.567	0.559	1e-50
351700019	241	Parkin coregulated gene protein [Heteroc	0.814	0.692	0.562	1e-50
194227493	257	PREDICTED: parkin coregulated gene prote	0.814	0.649	0.562	1e-50

>gi|118088298|ref|XP_419614.2| PREDICTED: parkin coregulated gene protein homolog [Gallus gallus]

 Score =  206 bits (525), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/168 (56%), Positives = 128/168 (76%)

Query: 34  RVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 93
           +V   F+++   KNT+   PP      +     + FR +Y RGDFPIA+E  + GN+I+W
Sbjct: 34  QVSDGFTVKAMMKNTVVRGPPLAGAFKERPTKPTAFRKFYERGDFPIAIEHDTKGNRIAW 93

Query: 94  KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 153
           K +I+ L+Y YYLP+FFDGL E  +PY+FFA +GIHD+LE+G++KI+PV+P LI+PIKNA
Sbjct: 94  KVEIEKLDYHYYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGENKILPVIPQLIIPIKNA 153

Query: 154 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
           LS RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct: 154 LSLRNRQVICITLKVLQHLVVSADMVGEALVPYYRQILPVLNIFKNMN 201

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|122939204|ref|NP_689623.2| parkin coregulated gene protein isoform 1 [Homo sapiens] gi|114610134|ref|XP_001154274.1| PREDICTED: parkin coregulated gene protein isoform 1 [Pan troglodytes] gi|77416872|sp|Q96M98.2|PACRG_HUMAN RecName: Full=Parkin coregulated gene protein; AltName: Full=Molecular chaperone/chaperonin-binding protein; AltName: Full=PARK2 coregulated gene protein

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 127/170 (74%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 157

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY 204
           + RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N  Y
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSY 207

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397499067|ref|XP_003820286.1| PREDICTED: parkin coregulated gene protein isoform 3 [Pan paniscus]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 127/170 (74%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 22  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 81

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 82  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 141

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY 204
           + RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N  Y
Sbjct: 142 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSY 191

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345305417|ref|XP_001509952.2| PREDICTED: parkin coregulated gene protein-like [Ornithorhynchus anatinus]

 Score =  205 bits (522), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 127/169 (75%)

Query: 34  RVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 93
           ++   F+++   KNT+   PP      +     + FR +Y RGDFPIA+E  S GNKI+W
Sbjct: 37  QISEGFTVKAMMKNTVVKGPPAAGAFRERPTKPTAFRKFYERGDFPIALEHDSKGNKIAW 96

Query: 94  KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 153
           K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P L++PIKNA
Sbjct: 97  KVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLVIPIKNA 156

Query: 154 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNN 202
           L+ RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N 
Sbjct: 157 LNLRNRQVICVTLKVLQHLVVSADMVGEALVPYYRQILPILNIFKNMNG 205

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|55925315|ref|NP_001007399.1| parkin co-regulated gene protein [Danio rerio] gi|55250310|gb|AAH85440.1| Zgc:101786 [Danio rerio] gi|182889412|gb|AAI65063.1| Zgc:101786 protein [Danio rerio]

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 127/164 (77%)

Query: 38  AFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDI 97
            F++ +  KN++   PP      +     + FR +Y RGDFPIA+E  S GN+I+WK +I
Sbjct: 16  GFTVMSTMKNSVVVGPPAAGAFRERPAKPTAFRKFYERGDFPIALEHDSKGNRIAWKVEI 75

Query: 98  KTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR 157
           + L+Y +YLP+FFDGL ET +PY+FFA +GIHD+LE+G +K++PV+P LI+PIKNAL+TR
Sbjct: 76  EKLDYHHYLPLFFDGLCETVHPYEFFARQGIHDMLEHGGNKVLPVIPQLIIPIKNALNTR 135

Query: 158 NPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
           N +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct: 136 NRQVICTTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 179

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|16552916|dbj|BAB71410.1| unnamed protein product [Homo sapiens]

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 127/170 (74%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GN+I+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNRIAWK 97

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNAL 157

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY 204
           + RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N  Y
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSY 207

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|126310753|ref|XP_001371578.1| PREDICTED: parkin coregulated gene protein-like [Monodelphis domestica]

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 98/177 (55%), Positives = 130/177 (73%), Gaps = 5/177 (2%)

Query: 30  SLPVR-----VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEF 84
           SLPV      V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E 
Sbjct: 28  SLPVHQPHSLVSDGFTVKAMMKNSVVRGPPTAGAFKERPTKPTAFRKFYERGDFPIALEH 87

Query: 85  KSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLP 144
            S GNKI+WK +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P
Sbjct: 88  DSKGNKIAWKVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIP 147

Query: 145 HLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
            LI+PIKNAL+ RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct: 148 QLIIPIKNALNLRNRQVICVTLKVLQHLVVSADMVGEALVPYYRQILPILNIFKNMN 204

Source: Monodelphis domestica

Species: Monodelphis domestica

Genus: Monodelphis

Family: Didelphidae

Order: Didelphimorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395839086|ref|XP_003792433.1| PREDICTED: parkin coregulated gene protein isoform 2 [Otolemur garnettii]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 126/168 (75%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPVAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNN 202
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N 
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMNG 205

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|351700019|gb|EHB02938.1| Parkin coregulated gene protein [Heterocephalus glaber]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 126/167 (75%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPSAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 204

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194227493|ref|XP_001500429.2| PREDICTED: parkin coregulated gene protein-like [Equus caballus]

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 126/167 (75%)

Query: 35  VVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWK 94
           V   F+++   KN++   PP      +     + FR +Y RGDFPIA+E  S GNKI+WK
Sbjct: 38  VSEGFTVKAMMKNSVVRGPPAAGAFKERPAKPTAFRKFYERGDFPIALEHDSKGNKIAWK 97

Query: 95  EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
            +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL
Sbjct: 98  VEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNAL 157

Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
           + RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct: 158 NLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 204

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
UNIPROTKB|F1NWU1	269	F1NWU1 "Uncharacterized protei	0.814	0.620	0.573	2e-49
UNIPROTKB|Q96M98	296	PACRG "Parkin coregulated gene	0.824	0.570	0.567	4.1e-49
ZFIN|ZDB-GENE-041114-100	236	pacrg "PARK2 co-regulated" [Da	0.795	0.690	0.570	6.7e-49
UNIPROTKB|A5PK71	257	PACRG "Uncharacterized protein	0.809	0.645	0.571	2.3e-48
MGI|MGI:1916560	241	Pacrg "PARK2 co-regulated" [Mu	0.809	0.688	0.565	2.9e-48
RGD|1561027	302	Pacrg "Park2 co-regulated" [Ra	0.741	0.503	0.601	5.4e-47
UNIPROTKB|F1LSS4	107	Pacrg "Protein Pacrg" [Rattus	0.517	0.990	0.660	7.2e-36
MGI|MGI:1914018	248	Pacrgl "PARK2 co-regulated-lik	0.604	0.5	0.325	2.3e-11

UNIPROTKB|F1NWU1 F1NWU1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 97/169 (57%), Positives = 131/169 (77%)

Query:    34 RVVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKIS 92
             +V   F+++   KNT+   PP     K++    T+ FR +Y RGDFPIA+E  + GN+I+
Sbjct:    13 QVSDGFTVKAMMKNTVVRGPPLAGAFKERPTKPTA-FRKFYERGDFPIAIEHDTKGNRIA 71

Query:    93 WKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKN 152
             WK +I+ L+Y YYLP+FFDGL E  +PY+FFA +GIHD+LE+G++KI+PV+P LI+PIKN
Sbjct:    72 WKVEIEKLDYHYYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGENKILPVIPQLIIPIKN 131

Query:   153 ALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
             ALS RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct:   132 ALSLRNRQVICITLKVLQHLVVSADMVGEALVPYYRQILPVLNIFKNMN 180

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

UNIPROTKB|Q96M98 PACRG "Parkin coregulated gene protein" [Homo sapiens (taxid:9606)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 97/171 (56%), Positives = 130/171 (76%)

Query:    35 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 93
             V   F+++   KN++   PP     K++    T+ FR +Y RGDFPIA+E  S GNKI+W
Sbjct:    38 VSEGFTVKAMMKNSVVRGPPAAGAFKERPTKPTA-FRKFYERGDFPIALEHDSKGNKIAW 96

Query:    94 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 153
             K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PVLP LI+PIKNA
Sbjct:    97 KVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVLPQLIIPIKNA 156

Query:   154 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY 204
             L+ RN +VIC TLKVLQHLV S+ MVG+ALVPYY+QILP LN++K++N  Y
Sbjct:   157 LNLRNRQVICVTLKVLQHLVVSAEMVGKALVPYYRQILPVLNIFKNMNGSY 207

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

ZFIN|ZDB-GENE-041114-100 pacrg "PARK2 co-regulated" [Danio rerio (taxid:7955)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 93/163 (57%), Positives = 127/163 (77%)

Query:    39 FSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIK 98
             F++ +  KN++   PP      +     + FR +Y RGDFPIA+E  S GN+I+WK +I+
Sbjct:    21 FTVMSTMKNSVVVGPPAAGAFRERPAKPTAFRKFYERGDFPIALEHDSKGNRIAWKVEIE 80

Query:    99 TLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN 158
              L+Y +YLP+FFDGL ET +PY+FFA +GIHD+LE+G +K++PV+P LI+PIKNAL+TRN
Sbjct:    81 KLDYHHYLPLFFDGLCETVHPYEFFARQGIHDMLEHGGNKVLPVIPQLIIPIKNALNTRN 140

Query:   159 PEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
              +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct:   141 RQVICTTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 183

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|A5PK71 PACRG "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 505 (182.8 bits), Expect = 2.3e-48, P = 2.3e-48
 Identities = 96/168 (57%), Positives = 128/168 (76%)

Query:    35 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 93
             V   F+++   KN++   PP     K++    T+ FR +Y RGDFPIA+E  S GNKI+W
Sbjct:    38 VSEGFTVKAMMKNSVVRGPPSAGAFKERPTKPTA-FRKFYERGDFPIALEHDSKGNKIAW 96

Query:    94 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 153
             K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNA
Sbjct:    97 KVEIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNA 156

Query:   154 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
             L+ RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K+ N
Sbjct:   157 LNLRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNKN 204

GO:0097225 "sperm midpiece" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

MGI|MGI:1916560 Pacrg "PARK2 co-regulated" [Mus musculus (taxid:10090)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 95/168 (56%), Positives = 128/168 (76%)

Query:    35 VVPAFSLQTHQKNTITGAPPKCVP-KDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISW 93
             V   F+++   KN++   PP     K++    T+ FR  Y RGDFPIA+E  S GNKI+W
Sbjct:    22 VSEGFTVKAMMKNSVVRGPPVAGAFKERPAKPTT-FRKCYERGDFPIALEHDSKGNKIAW 80

Query:    94 KEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNA 153
             K +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNA
Sbjct:    81 KVEIEKLDYHHYLPLFFDGLSEMTFPYEFFARRGIHDMLEHGGNKILPVIPQLIIPIKNA 140

Query:   154 LSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
             L+ RN ++IC TLKVLQHLV SS MVGEAL+PYY+QILP LN++K++N
Sbjct:   141 LNLRNRQIICVTLKVLQHLVVSSEMVGEALLPYYRQILPILNIFKNMN 188

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005929 "cilium" evidence=IDA

GO:0007286 "spermatid development" evidence=IGI

GO:0044297 "cell body" evidence=IDA

GO:0097225 "sperm midpiece" evidence=IDA

RGD|1561027 Pacrg "Park2 co-regulated" [Rattus norvegicus (taxid:10116)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 92/153 (60%), Positives = 121/153 (79%)

Query:    49 ITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPI 108
             + G P     K++    T+ FR +Y RGDFPIA+E  S GNKI+WK +I+ L+Y +YLP+
Sbjct:    98 VRGPPAAGAFKERPTKPTA-FRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPL 156

Query:   109 FFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKV 168
             FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL+ RN +VIC TLKV
Sbjct:   157 FFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNALNLRNRQVICVTLKV 216

Query:   169 LQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
             LQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct:   217 LQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 249

GO:0005739 "mitochondrion" evidence=ISO

GO:0005929 "cilium" evidence=ISO

GO:0007286 "spermatid development" evidence=ISO

GO:0044297 "cell body" evidence=ISO

GO:0097225 "sperm midpiece" evidence=ISO

UNIPROTKB|F1LSS4 Pacrg "Protein Pacrg" [Rattus norvegicus (taxid:10116)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 70/106 (66%), Positives = 92/106 (86%)

Query:    96 DIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALS 155
             +I+ L+Y +YLP+FFDGL E  +PY+FFA +GIHD+LE+G +KI+PV+P LI+PIKNAL+
Sbjct:     2 EIEKLDYHHYLPLFFDGLCEMTFPYEFFARQGIHDMLEHGGNKILPVIPQLIIPIKNALN 61

Query:   156 TRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLN 201
              RN +VIC TLKVLQHLV S+ MVGEALVPYY+QILP LN++K++N
Sbjct:    62 LRNRQVICVTLKVLQHLVVSAEMVGEALVPYYRQILPILNIFKNMN 107

GO:0005739 "mitochondrion" evidence=IEA

GO:0007286 "spermatid development" evidence=IEA

GO:0044297 "cell body" evidence=IEA

GO:0097225 "sperm midpiece" evidence=IEA

MGI|MGI:1914018 Pacrgl "PARK2 co-regulated-like" [Mus musculus (taxid:10090)]

 Score = 156 (60.0 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 42/129 (32%), Positives = 67/129 (51%)

Query:    69 FRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGI 128
             F   YS+G  P  +   SV +++ W+   + L +   L    +GLRET++PY F + +G 
Sbjct:    80 FAAIYSQGGIPCRLVHGSVKHRLQWECPPEILPFDPLLITLAEGLRETKHPYTFVSKEGF 139

Query:   129 HDLL--ENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPY 186
              +LL  +   +K +P+LP LI  +K AL   + EV    L  L  L   S +VG +L  +
Sbjct:   140 RELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLSALVQL---SVVVGPSLNGH 196

Query:   187 YKQILPHLN 195
              K +L  L+
Sbjct:   197 LKLLLTSLS 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      205       205   0.00096  111 3  11 22  0.48    32
                                                     31  0.47    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  20.63u 0.08s 20.71t   Elapsed:  00:00:32
  Total cpu time:  20.63u 0.08s 20.71t   Elapsed:  00:00:33
  Start:  Thu Aug 15 12:42:33 2013   End:  Thu Aug 15 12:43:06 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96M98	PACRG_HUMAN	No assigned EC number	0.5588	0.8292	0.5743	yes	N/A
Q9DAK2	PACRG_MOUSE	No assigned EC number	0.5568	0.8146	0.6929	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
pfam10274	183	pfam10274, ParcG, Parkin co-regulated protein	2e-69

>gnl|CDD|220670 pfam10274, ParcG, Parkin co-regulated protein

 Score =  209 bits (535), Expect = 2e-69
 Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 1/136 (0%)

Query: 67  SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 126
           + FR  Y RGD P  +   S  NKI WK D + L+Y  YLP FFDGLRET++PY+F A  
Sbjct: 1   TSFRYVYDRGDIPCRINHGSGKNKIQWKVDPEQLDYDPYLPTFFDGLRETKHPYRFVARN 60

Query: 127 GIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVP 185
           GI DLLE  G +KI+PVLP LILP+K AL+TR+PEV C  LKVLQ LV SS ++GEALVP
Sbjct: 61  GIIDLLEAGGGEKILPVLPQLILPLKAALNTRDPEVFCVALKVLQQLVKSSPLIGEALVP 120

Query: 186 YYKQILPHLNMYKDLN 201
           YY+Q+LP LN++K+ N
Sbjct: 121 YYRQLLPVLNLFKNKN 136

This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. Length = 183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	100.0
KOG3961|consensus	262		100.0
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.03
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	89.56
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	89.03
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	83.14
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	83.05
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	82.18
KOG2171|consensus	1075		81.02

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=100.00  E-value=9e-66  Score=433.99  Aligned_cols=138  Identities=62%  Similarity=1.097  Sum_probs=136.3

Q ss_pred             ChhHHHHhcCCCCEEEeeCCCCCeeeeeccCCCCCCCCchhhhhcccccccchhHhHHHhHHHHHHHc-CCCceeccccc
Q psy7091          67 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPH  145 (205)
Q Consensus        67 T~Fr~~Y~rGdlP~~i~h~s~~~~L~Wkv~~e~LDy~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~-~~~KIlPvlPq  145 (205)
                      |+||++|+||||||+++||+.+++|+|+|+||+||||||||+||||||||+|||+|+|++|++|||++ |++||+|+|||
T Consensus         1 t~Fr~~Y~rG~lP~~i~h~~~~~~l~W~~~~e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPq   80 (183)
T PF10274_consen    1 TQFRRFYERGDLPCRIDHGSVKNKLQWKVDPEKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQ   80 (183)
T ss_pred             ChHHHHHhcCCCCEEEECCCCCceeEEecChhhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999 88999999999


Q ss_pred             chHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhhhhhhHhhhccccC
Q psy7091         146 LILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRY  204 (205)
Q Consensus       146 LI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLPvlNlfk~~n~n~  204 (205)
                      ||+|||+||||||++|+|++|++||+||+++++||||||||||||||+||+||++|.|.
T Consensus        81 LI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~  139 (183)
T PF10274_consen   81 LIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNL  139 (183)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999875

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>KOG3961|consensus

Probab=100.00  E-value=1.3e-65  Score=445.91  Aligned_cols=167  Identities=51%  Similarity=0.857  Sum_probs=164.6

Q ss_pred             CccccccccccccC-CCCccCCCCCCCCCCChhHHHHhcCCCCEEEeeCCCCCeeeeeccCCCCCCCCchhhhhcccccc
Q psy7091          38 AFSLQTHQKNTITG-APPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRET  116 (205)
Q Consensus        38 ~Ft~~s~q~~t~~~-~pp~~~~f~~r~~~~T~Fr~~Y~rGdlP~~i~h~s~~~~L~Wkv~~e~LDy~~yLPiFfdGLrEt  116 (205)
                      +||.++.++++.+. .||++++|++++..+|+||.+|+||||||+.+|++++++|+|+|+||+|||++|||+|||||+|+
T Consensus        47 p~s~~~~~kr~~v~~~pp~~~~~~~~~~~ps~fr~~~~Rgdlpis~~~~~k~~~l~W~~~pe~Ldy~~yLp~F~dGL~e~  126 (262)
T KOG3961|consen   47 PFSARKLHKRPVVRLGPPTINAFRERPPVPSAFRAIYSRGDLPISLEHGSKGRKLQWECDPEKLDYCPYLPLFFDGLAET  126 (262)
T ss_pred             chhHhhcCCCceeccCCCCCccccccCCCccHHHHHHccCCCceecccCCCCCccccccCHHhccchHHHHHHhhhhhhc
Confidence            79999999999998 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhhhhhhH
Q psy7091         117 EYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNM  196 (205)
Q Consensus       117 ~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLPvlNl  196 (205)
                      +|||+|+|+||+.|||.++|+||+|||||||+|||+||+|||.||+|.+|++||+||.++++||.|||||||||||+||+
T Consensus       127 ~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPfYRQlLp~~n~  206 (262)
T KOG3961|consen  127 DHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPFYRQLLPVLNT  206 (262)
T ss_pred             CCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhHHHHhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccccC
Q psy7091         197 YKDLNNRY  204 (205)
Q Consensus       197 fk~~n~n~  204 (205)
                      ||++|.|.
T Consensus       207 ~k~~n~n~  214 (262)
T KOG3961|consen  207 FKNSNVNR  214 (262)
T ss_pred             hccccccc
Confidence            99999884

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.03  E-value=0.2  Score=46.42  Aligned_cols=90  Identities=22%  Similarity=0.417  Sum_probs=73.8

Q ss_pred             CCCchhhhhcccccccchhHhHHHhHHHHHHHcCC-CceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7091         102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG  180 (205)
Q Consensus       102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG  180 (205)
                      |...+|.+.+|.++....=+-..-.++--+|++-+ +-+++=+|+|++=+=.||...|+++...+|++|..++..+   -
T Consensus       321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~---~  397 (415)
T PF12460_consen  321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA---P  397 (415)
T ss_pred             HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC---H
Confidence            67889999999999876422223557777888755 6788999999999999999999999999999999998765   6


Q ss_pred             cchhhHHHhhhhhh
Q psy7091         181 EALVPYYKQILPHL  194 (205)
Q Consensus       181 ~ALvPyyRqLLPvl  194 (205)
                      +++-+|...|.|.|
T Consensus       398 ~~i~~hl~sLI~~L  411 (415)
T PF12460_consen  398 ELISEHLSSLIPRL  411 (415)
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777888888764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=89.56  E-value=0.54  Score=36.34  Aligned_cols=70  Identities=26%  Similarity=0.370  Sum_probs=55.7

Q ss_pred             hhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhhh
Q psy7091         119 PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILP  192 (205)
Q Consensus       119 PY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLP  192 (205)
                      +.+--|..|+.+|++.++.-|-++.||+..=|++||...  +.=..|+++...+++.=+  .+.|.|..-|+.-
T Consensus        30 ~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~--~~~l~~ll~~~~~   99 (107)
T PF08064_consen   30 PEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLD--EEDLGPLLDQIFA   99 (107)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCC--HHHHHHHHHHHHH
Confidence            345668889999999999999999999999999999955  777778888888887533  3666666666543

; GO: 0004674 protein serine/threonine kinase activity

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=89.03  E-value=1.4  Score=39.00  Aligned_cols=78  Identities=24%  Similarity=0.317  Sum_probs=68.0

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceeccccc---------chHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPH---------LILPIKNALSTRNPEVICETLKVLQHLV  173 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPq---------LI~PiK~AL~Trd~~V~~~~L~~Lq~LV  173 (205)
                      ..++++|+..+.+.+++-+-.|-+++-|++..-|..++..-..         ++--+..+|.+.|+++-..+.+.+-+|.
T Consensus        63 ~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl  142 (298)
T PF12719_consen   63 KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL  142 (298)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            5789999999977788899999999999999977777777775         8888999999999999999999999998


Q ss_pred             hcCCccc
Q psy7091         174 TSSSMVG  180 (205)
Q Consensus       174 ~~~~~VG  180 (205)
                      .++-...
T Consensus       143 L~~~i~~  149 (298)
T PF12719_consen  143 LSGRISD  149 (298)
T ss_pred             hcCCCCc
Confidence            7765555

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=83.14  E-value=1.3  Score=37.65  Aligned_cols=99  Identities=18%  Similarity=0.308  Sum_probs=75.6

Q ss_pred             cCCCCCCC-----CCCChhHHHHhcCCCCEEEeeCCCCCeeeeeccCCCCCCCCchhhhhcccccccchhHhHHHhHHHH
Q psy7091          56 CVPKDKTY-----DYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHD  130 (205)
Q Consensus        56 ~~~f~~r~-----~~~T~Fr~~Y~rGdlP~~i~h~s~~~~L~Wkv~~e~LDy~~yLPiFfdGLrEt~hPY~FlA~~G~~d  130 (205)
                      -|||+.+-     ..+++|.-+|.==|                 .-.+.+|...++.....||.+ +|--+.++-.-+.-
T Consensus        30 mGPFKh~vDDGLelRK~ayE~lytlLd-----------------~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~k   91 (169)
T PF08623_consen   30 MGPFKHKVDDGLELRKAAYECLYTLLD-----------------TCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSK   91 (169)
T ss_dssp             ETTCEEEEEGGGHHHHHHHHHHHHHHH-----------------STCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHH
T ss_pred             cCCceeeecCcHHHHHHHHHHHHHHHH-----------------HHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHH
Confidence            37777653     23566766665433                 234677888899999999999 88889999999999


Q ss_pred             HHHcCCCceecccccchHHHHHhhcCC------------CHHHHHHHHHHHHHH
Q psy7091         131 LLENGKDKIVPVLPHLILPIKNALSTR------------NPEVICETLKVLQHL  172 (205)
Q Consensus       131 LL~~~~~KIlPvlPqLI~PiK~AL~Tr------------d~~V~~~~L~~Lq~L  172 (205)
                      |...++.-++.-|.+|+.|+|+-|+++            ..|.+..+|+++..|
T Consensus        92 l~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l  145 (169)
T PF08623_consen   92 LAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKAL  145 (169)
T ss_dssp             HHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence            988899999999999999999999764            567788899888877

; PDB: 4A0C_A 1U6G_C.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=83.05  E-value=0.82  Score=37.89  Aligned_cols=94  Identities=22%  Similarity=0.339  Sum_probs=57.8

Q ss_pred             CCchhhhhcccccccchhH--hHHHhHHHHHHHcC-----CCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091         103 QYYLPIFFDGLRETEYPYK--FFASKGIHDLLENG-----KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS  175 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~--FlA~~G~~dLL~~~-----~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~  175 (205)
                      +..+..| ++ +|+++-+.  .=|.+-+..++..+     .+.++..+.+++..|-..+++.+-.|...++..|+.|+  
T Consensus         6 ~~~~~~l-~~-~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~--   81 (228)
T PF12348_consen    6 EEILAAL-EK-KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLA--   81 (228)
T ss_dssp             GGS-TTH-HH-HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHH--
T ss_pred             HHHHHHH-hc-cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH--
Confidence            3444433 33 66666663  34455666666555     35677778888889999999999999999999999885  


Q ss_pred             CCccccchhhHHHhhhhhh-hHhhhcc
Q psy7091         176 SSMVGEALVPYYKQILPHL-NMYKDLN  201 (205)
Q Consensus       176 ~~~VG~ALvPyyRqLLPvl-Nlfk~~n  201 (205)
                       ...|..+-||..+++|.| ....+.+
T Consensus        82 -~~l~~~~~~~~~~~l~~Ll~~~~~~~  107 (228)
T PF12348_consen   82 -RQLGSHFEPYADILLPPLLKKLGDSK  107 (228)
T ss_dssp             -HHHGGGGHHHHHHHHHHHHHGGG---
T ss_pred             -HHHhHhHHHHHHHHHHHHHHHHcccc
Confidence             578999999999999965 4544443

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=82.18  E-value=2.9  Score=32.80  Aligned_cols=70  Identities=29%  Similarity=0.397  Sum_probs=55.5

Q ss_pred             chh--HhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhh
Q psy7091         118 YPY--KFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQIL  191 (205)
Q Consensus       118 hPY--~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLL  191 (205)
                      .||  +--|..++.+|++.+|.-|-.++||+..=|++||+  ++|.=..++++...+++.  +=.+.|-|-.-|++
T Consensus        27 ~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~--L~~~~l~~ll~~~~   98 (107)
T smart00802       27 KPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKT--LKEEELGPLLDQIF   98 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHH
Confidence            466  77788999999999999999999999999999998  777888888888888765  22344555444443

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG2171|consensus

Probab=81.02  E-value=2.5  Score=45.01  Aligned_cols=98  Identities=19%  Similarity=0.287  Sum_probs=81.9

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcC------CCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENG------KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS  176 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~------~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~  176 (205)
                      +.++++|..|+.+-.+|-++.|.+++.-+...-      .++.-++||.+|.-+..-++..|.++-+.+|++|--|+   
T Consensus       158 ~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~---  234 (1075)
T KOG2171|consen  158 DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL---  234 (1075)
T ss_pred             HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH---
Confidence            367899999999999999999999877666543      26888999999999999999999999999999988885   


Q ss_pred             CccccchhhHHHhhhhh-hhHhhhcccc
Q psy7091         177 SMVGEALVPYYKQILPH-LNMYKDLNNR  203 (205)
Q Consensus       177 ~~VG~ALvPyyRqLLPv-lNlfk~~n~n  203 (205)
                      +..+.-|-||+-+++.+ +-+.+|+..|
T Consensus       235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~  262 (1075)
T KOG2171|consen  235 ESEPKLLRPHLSQIIQFSLEIAKNKELE  262 (1075)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhccccc
Confidence            56678888999999875 4466666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.7
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	95.91
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	95.49
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	94.46
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	94.3
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	94.29
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	93.96
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	93.81
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	93.64
1qgr_A	876	Protein (importin beta subunit); transport recepto	92.86
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	92.83
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	92.47
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	92.02
1qgr_A	876	Protein (importin beta subunit); transport recepto	91.39
2x19_B	963	Importin-13; nuclear transport, protein transport;	91.26
2x1g_F	971	Cadmus; transport protein, developmental protein,	85.82
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	84.39

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=96.70  E-value=0.0014  Score=52.85  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=79.1

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhc-CCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALS-TRNPEVICETLKVLQHLVTSSSMVGE  181 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~-Trd~~V~~~~L~~Lq~LV~~~~~VG~  181 (205)
                      ..+.+-|++++...+--+|.-|..++..+++..+.-+-.-+.+++..|+..|. ..|..|...++++|..|+.   ..|+
T Consensus        14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~---~l~~   90 (242)
T 2qk2_A           14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK---GLAK   90 (242)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---HHGG
T ss_pred             ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HHhh
Confidence            44556799999988888999999999999987443233456788999999995 8999999999999999974   5789


Q ss_pred             chhhHHHhhhhhhh-Hhhhcccc
Q psy7091         182 ALVPYYKQILPHLN-MYKDLNNR  203 (205)
Q Consensus       182 ALvPyyRqLLPvlN-lfk~~n~n  203 (205)
                      .+-+|..+++|.+- .+++++..
T Consensus        91 ~~~~~~~~ilp~ll~~l~d~~~~  113 (242)
T 2qk2_A           91 RFSNYASACVPSLLEKFKEKKPN  113 (242)
T ss_dssp             GGHHHHHHHHHHHHHGGGCCCHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCHH
Confidence            99999999998654 66665543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=95.91  E-value=0.019  Score=47.92  Aligned_cols=93  Identities=10%  Similarity=0.127  Sum_probs=71.3

Q ss_pred             chhhhhcccccccchhHhHHHhHHHHHHHcCCCceecc--cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091         105 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPV--LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA  182 (205)
Q Consensus       105 yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPv--lPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A  182 (205)
                      +||..+|-+.|.+..-+--|...+..+++.... +.+.  ++.++..|-.+|+++++.+-..+|..|..++..+...-..
T Consensus       105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~  183 (249)
T 2qk1_A          105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST  183 (249)
T ss_dssp             HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence            567888888888765555555566666665433 4444  8899999999999999999999999999998765544467


Q ss_pred             hhhHH-HhhhhhhhHhh
Q psy7091         183 LVPYY-KQILPHLNMYK  198 (205)
Q Consensus       183 LvPyy-RqLLPvlNlfk  198 (205)
                      +.+|+ .+|+|++--+-
T Consensus       184 l~~~l~~~iip~l~~~l  200 (249)
T 2qk1_A          184 LQRYLKDEVVPIVIQIV  200 (249)
T ss_dssp             HHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999 99999886443

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=95.49  E-value=0.008  Score=55.37  Aligned_cols=90  Identities=17%  Similarity=0.291  Sum_probs=72.9

Q ss_pred             CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCC--HHHHHHHHHHHHHHHhcCCcccc
Q psy7091         104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICETLKVLQHLVTSSSMVGE  181 (205)
Q Consensus       104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd--~~V~~~~L~~Lq~LV~~~~~VG~  181 (205)
                      .++|.++++|...+..-+.-|...+.++....++.+.|.++.++..+-..|.+.|  +++-..++.+|..|+.   .+|+
T Consensus       639 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~---~~~~  715 (861)
T 2bpt_A          639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS---NIGA  715 (861)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH---HHGG
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHH---Hhhh
Confidence            3456667777544555666677778888888888999999999999999998865  8999999999988864   5799


Q ss_pred             chhhHHHhhhhhhhH
Q psy7091         182 ALVPYYKQILPHLNM  196 (205)
Q Consensus       182 ALvPyyRqLLPvlNl  196 (205)
                      .+.||+.+++|.+--
T Consensus       716 ~~~~~l~~~l~~l~~  730 (861)
T 2bpt_A          716 DFIPYLNDIMALCVA  730 (861)
T ss_dssp             GGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999998753

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=94.46  E-value=0.014  Score=55.14  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=76.6

Q ss_pred             CCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091         102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE  181 (205)
Q Consensus       102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~  181 (205)
                      ++..++.++++|.+.+..-+--|-..+..+.+..+..+.|.+|+++..|..+|+..+.+....+++++..|+   +.+|+
T Consensus       440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~---~~~~~  516 (852)
T 4fdd_A          440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA---DSVGH  516 (852)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HHHGG
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH---HHhhh
Confidence            356778888999887777788888888889888778899999999999999999999988888888888886   45777


Q ss_pred             chh--hHHHhhhhhhh
Q psy7091         182 ALV--PYYKQILPHLN  195 (205)
Q Consensus       182 ALv--PyyRqLLPvlN  195 (205)
                      .+.  +||.+++|.+.
T Consensus       517 ~~~~~~~~~~l~p~l~  532 (852)
T 4fdd_A          517 HLNKPEYIQMLMPPLI  532 (852)
T ss_dssp             GGCCHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHH
Confidence            774  59999999764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=94.30  E-value=0.043  Score=51.82  Aligned_cols=94  Identities=12%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA  182 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A  182 (205)
                      +.+++++++.+......-+--|..-+.++....++.+.|.+++++..|-++|+..++++-..+..++-.++   ..+|++
T Consensus       628 ~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~---~~~~~~  704 (852)
T 4fdd_A          628 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS---IQMGIE  704 (852)
T ss_dssp             CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHH---HHHGGG
T ss_pred             CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---HHhhHh
Confidence            35678888887554444444555566677777788999999999999999999999999999999988886   456889


Q ss_pred             hhhHHHhhhhhhh-Hhhh
Q psy7091         183 LVPYYKQILPHLN-MYKD  199 (205)
Q Consensus       183 LvPyyRqLLPvlN-lfk~  199 (205)
                      +-||+.++++.|- ++.+
T Consensus       705 ~~p~~~~il~~L~~~l~~  722 (852)
T 4fdd_A          705 MQPYIPMVLHQLVEIINR  722 (852)
T ss_dssp             GGGGTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence            9999999998753 5544

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=94.29  E-value=0.14  Score=41.00  Aligned_cols=85  Identities=18%  Similarity=0.180  Sum_probs=65.7

Q ss_pred             CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccch
Q psy7091         104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL  183 (205)
Q Consensus       104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~AL  183 (205)
                      .++|.+++.+.+.+..-+--|...+..+++..+      +.+++..|..+|.++|+.|-..++..|..++.... -....
T Consensus        98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~  170 (242)
T 2qk2_A           98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALN  170 (242)
T ss_dssp             HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCcc
Confidence            367888888888887777777778887776533      56788889999999999999999999988764421 11245


Q ss_pred             hhHHHhhhhhhh
Q psy7091         184 VPYYKQILPHLN  195 (205)
Q Consensus       184 vPyyRqLLPvlN  195 (205)
                      .+|+.+++|.+-
T Consensus       171 ~~~l~~l~p~l~  182 (242)
T 2qk2_A          171 KKLLKLLTTSLV  182 (242)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            688999998776

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=93.96  E-value=0.047  Score=53.72  Aligned_cols=91  Identities=10%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             CCCchhhhhcccccccc-hhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7091         102 YQYYLPIFFDGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG  180 (205)
Q Consensus       102 y~~yLPiFfdGLrEt~h-PY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG  180 (205)
                      |++++|.+.++|...+. ..+--|.+++..+....+.++.|.+++++..+..+++..|++|-..+++++..++.   ..|
T Consensus       211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~---~~~  287 (1230)
T 1u6g_C          211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR---RCP  287 (1230)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH---CTT
T ss_pred             HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HCh
Confidence            77889999999876543 35556788888888888889999999999999999999999999999999988875   478


Q ss_pred             cchhhHHHhhhhhhh
Q psy7091         181 EALVPYYKQILPHLN  195 (205)
Q Consensus       181 ~ALvPyyRqLLPvlN  195 (205)
                      +.+.||..+++|.+-
T Consensus       288 ~~~~~~l~~li~~ll  302 (1230)
T 1u6g_C          288 KEVYPHVSTIINICL  302 (1230)
T ss_dssp             CCCHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHH
Confidence            899999999999763

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=93.81  E-value=0.037  Score=50.95  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=69.4

Q ss_pred             CCCCchhhhh----cccccccc-hhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091         101 NYQYYLPIFF----DGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS  175 (205)
Q Consensus       101 Dy~~yLPiFf----dGLrEt~h-PY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~  175 (205)
                      ++.+|++.++    +.+..... ..+--+...+..+....++.+.|.+|+++..|...|++.++++...++.++..|+. 
T Consensus       590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~-  668 (861)
T 2bpt_A          590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN-  668 (861)
T ss_dssp             GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-
Confidence            3445554444    44443332 23333444556666667778899999999999999999999999999999988864 


Q ss_pred             CCccccchhhHHHhhhhhhh-Hhhh
Q psy7091         176 SSMVGEALVPYYKQILPHLN-MYKD  199 (205)
Q Consensus       176 ~~~VG~ALvPyyRqLLPvlN-lfk~  199 (205)
                        .+|+.+.||..+++|.+- .+.+
T Consensus       669 --~~~~~~~~~~~~l~~~l~~~l~~  691 (861)
T 2bpt_A          669 --SLEEDFRRYSDAMMNVLAQMISN  691 (861)
T ss_dssp             --HTGGGGHHHHHHHHHHHHHHHHC
T ss_pred             --HhchhccchHHHHHHHHHHHhCC
Confidence              568899999999998753 4443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=93.64  E-value=0.074  Score=44.93  Aligned_cols=88  Identities=15%  Similarity=0.232  Sum_probs=64.1

Q ss_pred             CchhhhhcccccccchhHhHHHhHHHHHHHcCC-CceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091         104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA  182 (205)
Q Consensus       104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A  182 (205)
                      ..+|.+.++|.+.+--.+.-|-..+-.+.+... +.+-+.+++++..|-.+|+..++.|-..+..+|..++   +..|+.
T Consensus       366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~---~~~~~~  442 (462)
T 1ibr_B          366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEA  442 (462)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHGGGG
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---Hhcccc
Confidence            455666667776554455555555555554332 4567889999999999999999999999999999985   456666


Q ss_pred             h--hhHHHhhhhhh
Q psy7091         183 L--VPYYKQILPHL  194 (205)
Q Consensus       183 L--vPyyRqLLPvl  194 (205)
                      +  -+|+.+++|.+
T Consensus       443 ~~~~~~l~~ll~~L  456 (462)
T 1ibr_B          443 AINDVYLAPLLQCL  456 (462)
T ss_dssp             CCSTTTHHHHHHHH
T ss_pred             cccHHHHHHHHHHH
Confidence            5  37888888754

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=92.86  E-value=0.043  Score=50.59  Aligned_cols=90  Identities=20%  Similarity=0.300  Sum_probs=71.2

Q ss_pred             CCchhhhhcccccc-cchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcc
Q psy7091         103 QYYLPIFFDGLRET-EYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMV  179 (205)
Q Consensus       103 ~~yLPiFfdGLrEt-~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~V  179 (205)
                      +.++|.+..+|... ...-+.-|...+.+|....++.+.|.+++++..|-..|++  .+.++...++.++..++.   .+
T Consensus       648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~---~~  724 (876)
T 1qgr_A          648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AI  724 (876)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH---Hh
Confidence            34556667777765 3445666777888888887788999999999999999987  467888899999888853   56


Q ss_pred             ccchhhHHHhhhhhhh
Q psy7091         180 GEALVPYYKQILPHLN  195 (205)
Q Consensus       180 G~ALvPyyRqLLPvlN  195 (205)
                      |+.+.||+.+++|.+-
T Consensus       725 g~~~~~~l~~~~~~l~  740 (876)
T 1qgr_A          725 GGEFKKYLEVVLNTLQ  740 (876)
T ss_dssp             GGGGGGGHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHH
Confidence            8889999999999764

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=92.83  E-value=0.094  Score=51.57  Aligned_cols=90  Identities=14%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCC-------CceecccccchHHHHHhh--cCCCHHHHHHHHHHHHHHH
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-------DKIVPVLPHLILPIKNAL--STRNPEVICETLKVLQHLV  173 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-------~KIlPvlPqLI~PiK~AL--~Trd~~V~~~~L~~Lq~LV  173 (205)
                      +..||.++.++.+...-.+--|...+.++++..+       ..+.|.+++++..+-..|  ...|++|-..++++|..|+
T Consensus       518 ~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~  597 (1230)
T 1u6g_C          518 QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII  597 (1230)
T ss_dssp             TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            5667777777766433223346667888887633       478899999999999999  6678899999999999886


Q ss_pred             hcCCccccchhhHHHhhhhhhh
Q psy7091         174 TSSSMVGEALVPYYKQILPHLN  195 (205)
Q Consensus       174 ~~~~~VG~ALvPyyRqLLPvlN  195 (205)
                         ..+|+.+.+||.+++|.|.
T Consensus       598 ---~~~g~~~~~~~~~~l~~L~  616 (1230)
T 1u6g_C          598 ---CNLGDNLGSDLPNTLQIFL  616 (1230)
T ss_dssp             ---HHTGGGCCTHHHHHHHHHH
T ss_pred             ---HHhCchhhhhHHHHHHHHH
Confidence               4578888899999998764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=92.47  E-value=0.13  Score=43.38  Aligned_cols=93  Identities=19%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             CCchhhhhccccccc-------chhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091         103 QYYLPIFFDGLRETE-------YPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS  175 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~-------hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~  175 (205)
                      ..++|.+++.|.+.+       .--+-.|...+..|...-++   .++|.++.-+...|++.|+.+-..++.+|..++  
T Consensus       320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~--  394 (462)
T 1ibr_B          320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL--  394 (462)
T ss_dssp             HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS--
T ss_pred             hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh--
Confidence            456777777776532       23355566666666666555   456678888899999999999999999988875  


Q ss_pred             CCccc-cchhhHHHhhhhh-hhHhhhcc
Q psy7091         176 SSMVG-EALVPYYKQILPH-LNMYKDLN  201 (205)
Q Consensus       176 ~~~VG-~ALvPyyRqLLPv-lNlfk~~n  201 (205)
                       +..+ +++-+|..+++|. ++.+.+.+
T Consensus       395 -~~~~~~~~~~~l~~~~~~l~~~l~d~~  421 (462)
T 1ibr_B          395 -EGPEPSQLKPLVIQAMPTLIELMKDPS  421 (462)
T ss_dssp             -SSSCTTTTCTTTTTHHHHHHHGGGCSC
T ss_pred             -cCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence             3444 5567777888884 44555443

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=92.02  E-value=0.14  Score=42.64  Aligned_cols=82  Identities=11%  Similarity=0.220  Sum_probs=63.2

Q ss_pred             CCCchhhhhcccccccchhHhHHHhHHHHHH----HcCC---Cceeccc-ccchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7091         102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLL----ENGK---DKIVPVL-PHLILPIKNALSTRNPEVICETLKVLQHLV  173 (205)
Q Consensus       102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL----~~~~---~KIlPvl-PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV  173 (205)
                      .+..|+.++++|.-. .|.   .++++-..|    ..++   .++.+.+ |++|..+...|+..+++|=..+.++|-.+.
T Consensus       144 l~~ll~~l~~~l~~k-~~~---vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          144 NEDMLKDILEHMKHK-TPQ---IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI  219 (249)
T ss_dssp             THHHHHHHHHHTTCS-SHH---HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC-ChH---HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            457788888888655 554   455555444    4455   4677999 999999999999999999999999987764


Q ss_pred             hcCCccccc-hhhHHHhh
Q psy7091         174 TSSSMVGEA-LVPYYKQI  190 (205)
Q Consensus       174 ~~~~~VG~A-LvPyyRqL  190 (205)
                         ..||+. +.||..+|
T Consensus       220 ---~~vG~~~~~p~l~~L  234 (249)
T 2qk1_A          220 ---KIFGMNTFVKTLEHL  234 (249)
T ss_dssp             ---HHHCSGGGHHHHHHS
T ss_pred             ---HHhCHHHHHHHHHHH
Confidence               679985 88888775

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=91.39  E-value=0.18  Score=46.49  Aligned_cols=92  Identities=14%  Similarity=0.120  Sum_probs=68.7

Q ss_pred             CchhhhhcccccccchhHhHHHhHHHHHHHcCCCc--eecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC----
Q psy7091         104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDK--IVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS----  177 (205)
Q Consensus       104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~K--IlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~----  177 (205)
                      ..+|.++.+|.+.....+.-|-..+..+.+..+..  .-+.+++++..|-.+|+. ++.|-..++.+|..|+....    
T Consensus       408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~  486 (876)
T 1qgr_A          408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAAD  486 (876)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccc
Confidence            35778888887765555667777777777764433  347888999999999987 48898899999998876432    


Q ss_pred             -------ccccchhhHHHhhhhhhhH
Q psy7091         178 -------MVGEALVPYYKQILPHLNM  196 (205)
Q Consensus       178 -------~VG~ALvPyyRqLLPvlNl  196 (205)
                             ..++.+.||+.+|+|.|--
T Consensus       487 ~~~~~~~~~~~~l~~~~~~il~~L~~  512 (876)
T 1qgr_A          487 VADDQEEPATYCLSSSFELIVQKLLE  512 (876)
T ss_dssp             CTTSCCCCCCCSSTTTHHHHHHHHHH
T ss_pred             cccccccccchhhhHhHHHHHHHHHH
Confidence                   2346799999999998753

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=91.26  E-value=0.4  Score=45.62  Aligned_cols=90  Identities=10%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCccc
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVG  180 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~VG  180 (205)
                      ...|+.+++||.+  ..-+--|-..+..+.+..++.+.|.+++++.-+-.+++.  -+.+.....++++..++...+  .
T Consensus       528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~--~  603 (963)
T 2x19_B          528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ--V  603 (963)
T ss_dssp             TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC--H
T ss_pred             HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC--H
Confidence            5678888889976  455566777788888888888999999999999999986  357888888999988875433  4


Q ss_pred             cchhhHHHhhhhhhhH
Q psy7091         181 EALVPYYKQILPHLNM  196 (205)
Q Consensus       181 ~ALvPyyRqLLPvlNl  196 (205)
                      +...||+.++++++.-
T Consensus       604 ~~~~~~~~~l~~~l~~  619 (963)
T 2x19_B          604 EEILKNLHSLISPYIQ  619 (963)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8899999999988763

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=85.82  E-value=0.59  Score=44.78  Aligned_cols=88  Identities=15%  Similarity=0.171  Sum_probs=71.0

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCccc
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVG  180 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~VG  180 (205)
                      ...|+.+++|| .  .+..--|-..+.++.+..+..+.|.+++|+.-+-.+++.  -+.+.....++++-.++...+  +
T Consensus       545 ~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--~  619 (971)
T 2x1g_F          545 PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--P  619 (971)
T ss_dssp             HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--T
T ss_pred             HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--H
Confidence            45667777888 2  556677778888999888889999999999999999998  467888999999888876533  5


Q ss_pred             cchhhHHHhhhhhhh
Q psy7091         181 EALVPYYKQILPHLN  195 (205)
Q Consensus       181 ~ALvPyyRqLLPvlN  195 (205)
                      +...||+.++++++.
T Consensus       620 ~~~~~~~~~ll~~l~  634 (971)
T 2x1g_F          620 EEIPKYLDIIVSPCF  634 (971)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888999999876654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=84.39  E-value=2  Score=35.24  Aligned_cols=94  Identities=12%  Similarity=0.224  Sum_probs=53.0

Q ss_pred             chhhhhc-ccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccch
Q psy7091         105 YLPIFFD-GLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL  183 (205)
Q Consensus       105 yLPiFfd-GLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~AL  183 (205)
                      ++|.++| ||-+++..-+--|.+.+.++.+...     ....++.-|-.+|.++||.+...+|..|..++..-..-.-..
T Consensus       103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~  177 (278)
T 4ffb_C          103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNV  177 (278)
T ss_dssp             HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred             HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence            3444444 3445554444445555555554422     123345566689999999999999999999886522111122


Q ss_pred             hhHHHhhhhhhh-Hhhhcccc
Q psy7091         184 VPYYKQILPHLN-MYKDLNNR  203 (205)
Q Consensus       184 vPyyRqLLPvlN-lfk~~n~n  203 (205)
                      -+....+++.+- ++-+.+.+
T Consensus       178 k~~l~~i~~~l~k~l~d~~~~  198 (278)
T 4ffb_C          178 QTFLPELLKHVPQLAGHGDRN  198 (278)
T ss_dssp             HHHHHHHGGGHHHHHTCSSHH
T ss_pred             hhHHHHHHHHHHHHHhCCcHH
Confidence            334555555443 44444444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	6e-07
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	2e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.001

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 97   IKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST 156
            +  ++ +  LP     L       +      +   + +    I P+L + I      L  
Sbjct: 955  LTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014

Query: 157  RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
             +  V    L        +       +      +LPHL
Sbjct: 1015 PDLNVRRVALVTFNSAAHN---KPSLIRDLLDTVLPHL 1049

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 107 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICE 164
           P     L + + P    A   I D+  + ++        ++  +   +S  N   E+   
Sbjct: 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA 701

Query: 165 TLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
            L V   + ++   +G   +PY   I+   
Sbjct: 702 VLSVFGDIASN---IGADFIPYLNDIMALC 728

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 15/156 (9%), Positives = 46/156 (29%), Gaps = 5/156 (3%)

Query: 47  NTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYL 106
                   K + +    +          +    +A++  S   +       + +     L
Sbjct: 608 QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 667

Query: 107 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETL 166
            + +  +++     +  +   + DL +     + P +   +  +   L+     V     
Sbjct: 668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT 727

Query: 167 KVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNN 202
             +  +      +G  + PY   +L  L   + +N 
Sbjct: 728 WAIGEISIQ---MGIEMQPYIPMVLHQL--VEIINR 758

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	95.81
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	94.49
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	93.12
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	92.62
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	90.17
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	90.02
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	88.47
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	88.46
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	86.56

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0032  Score=53.79  Aligned_cols=90  Identities=17%  Similarity=0.290  Sum_probs=76.8

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCccc
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMVG  180 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Tr--d~~V~~~~L~~Lq~LV~~~~~VG  180 (205)
                      +..+|.+.++|.+.+...+-.|...+.|+....++.+.|.+++++..|-+.|...  ++++-..++.+|..++   ..+|
T Consensus       638 ~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~---~~~~  714 (861)
T d2bpta1         638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIA---SNIG  714 (861)
T ss_dssp             HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH---HHHG
T ss_pred             HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH---HHHH
Confidence            3467788889999999999999999999988888999999999999999999764  5677778888877775   4689


Q ss_pred             cchhhHHHhhhhhhh
Q psy7091         181 EALVPYYKQILPHLN  195 (205)
Q Consensus       181 ~ALvPyyRqLLPvlN  195 (205)
                      +++.||.-+++|++-
T Consensus       715 ~~~~~~l~~~~~~l~  729 (861)
T d2bpta1         715 ADFIPYLNDIMALCV  729 (861)
T ss_dssp             GGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.017  Score=45.40  Aligned_cols=78  Identities=13%  Similarity=0.206  Sum_probs=59.6

Q ss_pred             CCchhhhhcccccccchhHhHHHhHHHHHHHc-CCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091         103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE  181 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~-~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~  181 (205)
                      ..+++.+.+++...+-..+.-|..++-.+.+. .++.+-|.+++++..|..+|+..++.|-.+|+.+|.+++   +.+++
T Consensus       364 ~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~---~~~~~  440 (458)
T d1ibrb_         364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPE  440 (458)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHGGG
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHhhc
Confidence            45677777888876655566555666555554 346678999999999999999999999999999998885   45555


Q ss_pred             ch
Q psy7091         182 AL  183 (205)
Q Consensus       182 AL  183 (205)
                      ..
T Consensus       441 ~~  442 (458)
T d1ibrb_         441 AA  442 (458)
T ss_dssp             GC
T ss_pred             cc
Confidence            43

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.018  Score=52.43  Aligned_cols=91  Identities=15%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             CCCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7091         101 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG  180 (205)
Q Consensus       101 Dy~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG  180 (205)
                      |-..++|.+.+.|.....--+..|...+..++...++.+.|.+.++|.++=.+|+..|++|=..+|.+|..++...   .
T Consensus       959 ~~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~---p 1035 (1207)
T d1u6gc_         959 DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK---P 1035 (1207)
T ss_dssp             SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC---G
T ss_pred             CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC---h
Confidence            4456889988888765544566666666667777778889999999999989999999999999999999998643   3


Q ss_pred             cchhhHHHhhhhhh
Q psy7091         181 EALVPYYKQILPHL  194 (205)
Q Consensus       181 ~ALvPyyRqLLPvl  194 (205)
                      ..+-||+.+|||.+
T Consensus      1036 ~li~~~l~~llp~l 1049 (1207)
T d1u6gc_        1036 SLIRDLLDTVLPHL 1049 (1207)
T ss_dssp             GGTGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            44569999999975

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.62  E-value=0.047  Score=46.31  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             chhhhhcccccccch-hHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccch
Q psy7091         105 YLPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL  183 (205)
Q Consensus       105 yLPiFfdGLrEt~hP-Y~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~AL  183 (205)
                      .+..+...+...... .+--+-..+..++..-++.+.|.+++++..|-.+|+..+++|...++.++..++   ...|+.+
T Consensus       598 l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~---~~~~~~~  674 (861)
T d2bpta1         598 LMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS---NSLEEDF  674 (861)
T ss_dssp             HHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH---HHTGGGG
T ss_pred             HHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHH---HHhHHHh
Confidence            344444444444433 222344556666777778899999999999999999999999999999988875   4678999


Q ss_pred             hhHHHhhhhhh-hHhhhccc
Q psy7091         184 VPYYKQILPHL-NMYKDLNN  202 (205)
Q Consensus       184 vPyyRqLLPvl-Nlfk~~n~  202 (205)
                      .||..++++.+ +.+++.+.
T Consensus       675 ~~~~~~i~~~L~~~l~~~~~  694 (861)
T d2bpta1         675 RRYSDAMMNVLAQMISNPNA  694 (861)
T ss_dssp             HHHHHHHHHHHHHHHHCTTC
T ss_pred             HhhHHHHHHHHHHHhCCCCC
Confidence            99999999865 56665543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.17  Score=45.09  Aligned_cols=91  Identities=16%  Similarity=0.219  Sum_probs=74.4

Q ss_pred             CCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091         102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE  181 (205)
Q Consensus       102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~  181 (205)
                      ++..++.+++++.+....-+--|-..+..+.+.+++.+.|.+++++..+-.++...+.++....+++|+.|+   +.+|+
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~---~~~~~  552 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA---DSVGH  552 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH---HHHGG
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---Hhhhc
Confidence            466778888888776665666677788888888899999999999999999999999999999999988885   56777


Q ss_pred             chh--hHHHhhhhhhh
Q psy7091         182 ALV--PYYKQILPHLN  195 (205)
Q Consensus       182 ALv--PyyRqLLPvlN  195 (205)
                      .+.  +|+..++|.+-
T Consensus       553 ~~~~~~~~~~l~~~l~  568 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLI  568 (888)
T ss_dssp             GGCSHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHH
Confidence            773  57788877663

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.02  E-value=0.092  Score=44.82  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=72.0

Q ss_pred             CCchhhhhcccccccch-hHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCC--CHHHHHHHHHHHHHHHhcCCcc
Q psy7091         103 QYYLPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR--NPEVICETLKVLQHLVTSSSMV  179 (205)
Q Consensus       103 ~~yLPiFfdGLrEt~hP-Y~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Tr--d~~V~~~~L~~Lq~LV~~~~~V  179 (205)
                      +..+|.++.||...++| -+..|..-+.++....++.+.|.+++++..+=.+|+..  ++++-..++.++..++.   .+
T Consensus       648 ~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~---~~  724 (876)
T d1qgra_         648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AI  724 (876)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH---HH
Confidence            33456777888888887 55666666777777788999999999999999999754  46777888888887764   58


Q ss_pred             ccchhhHHHhhhhhhh
Q psy7091         180 GEALVPYYKQILPHLN  195 (205)
Q Consensus       180 G~ALvPyyRqLLPvlN  195 (205)
                      |+...||..+++|.+.
T Consensus       725 ~~~~~~yl~~~l~~l~  740 (876)
T d1qgra_         725 GGEFKKYLEVVLNTLQ  740 (876)
T ss_dssp             GGGGGGGHHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHH
Confidence            9999999999999875

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.21  Score=44.56  Aligned_cols=88  Identities=13%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             chhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchh
Q psy7091         105 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV  184 (205)
Q Consensus       105 yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALv  184 (205)
                      +++++...+.....--+--|..-+.||....+..+.|.+++++..|-.+|+..+.+|..++..++-.|+.   ..|+++-
T Consensus       666 l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~---~~~~~~~  742 (888)
T d1qbkb_         666 ILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISI---QMGIEMQ  742 (888)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHH---HTGGGGG
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHH---HHHHHhh
Confidence            3444444443333222333334455777778889999999999999999999999999988888877754   5789999


Q ss_pred             hHHHhhhhhhh
Q psy7091         185 PYYKQILPHLN  195 (205)
Q Consensus       185 PyyRqLLPvlN  195 (205)
                      ||+.++++.|-
T Consensus       743 py~~~il~~L~  753 (888)
T d1qbkb_         743 PYIPMVLHQLV  753 (888)
T ss_dssp             GGSHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            99999997765

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.22  Score=38.79  Aligned_cols=77  Identities=19%  Similarity=0.183  Sum_probs=55.6

Q ss_pred             hHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhhhhh-hHhh
Q psy7091         120 YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHL-NMYK  198 (205)
Q Consensus       120 Y~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLPvl-Nlfk  198 (205)
                      -+..|...+..+....++.+   +|.++.-|...|++.|+.+-.+++.+|..++  ....++.+-||..+++|.+ ..+.
T Consensus       343 ~~~~a~~~l~~l~~~~~~~~---~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~--~~~~~~~~~~~l~~i~~~l~~~l~  417 (458)
T d1ibrb_         343 PCKAAGVCLMLLATCCEDDI---VPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL--EGPEPSQLKPLVIQAMPTLIELMK  417 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTTTH---HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS--SSSCTTTTCTTTTTHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHhccHhh---hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HhcCHhHHHHHHHHHHHHHHHHhC
Confidence            45667777777777777665   5678888999999999999999998876653  1234667788888998844 4444


Q ss_pred             hcc
Q psy7091         199 DLN  201 (205)
Q Consensus       199 ~~n  201 (205)
                      +.+
T Consensus       418 d~~  420 (458)
T d1ibrb_         418 DPS  420 (458)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.22  Score=45.07  Aligned_cols=94  Identities=11%  Similarity=0.095  Sum_probs=75.3

Q ss_pred             CCCCchhhhhcccccccch-hHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcc
Q psy7091         101 NYQYYLPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMV  179 (205)
Q Consensus       101 Dy~~yLPiFfdGLrEt~hP-Y~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~V  179 (205)
                      -+..+++.++++|.....+ .+-.+.+++..|....+.++.|.+++++..+-.+++..++++-..++++|..++.   ..
T Consensus       207 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~---~~  283 (1207)
T d1u6gc_         207 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR---RC  283 (1207)
T ss_dssp             -CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH---CT
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH---hC
Confidence            3566778788877654333 4445677888888888999999999999999999999999999999999999875   45


Q ss_pred             ccchhhHHHhhhhhhhHh
Q psy7091         180 GEALVPYYKQILPHLNMY  197 (205)
Q Consensus       180 G~ALvPyyRqLLPvlNlf  197 (205)
                      +..+.||+.++++.+--+
T Consensus       284 ~~~~~~~~~~ii~~~l~~  301 (1207)
T d1u6gc_         284 PKEVYPHVSTIINICLKY  301 (1207)
T ss_dssp             TCCCHHHHHHHHHHHTTC
T ss_pred             hhhhhhhHHHHHHHHHHH
Confidence            677899999988776433