Psyllid ID: psy70

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MPESSKPHQWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEEEEcccEEccccEEEEEcccccccccccccccccEEEEEccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHccccccccccccEEEEEEEEEccccccccHHEEEcccccccccHHHccccccEEEEEcccccccccEEEEc
Coil and Loop (DISEMBL)
mpesskphqwqsdeasvragtcyfhvKVPFVIQYEVMfqdkhdcgGAYLKLLtegpalqdltafndktpytimfgpdkcgtddkvctv
Flexible Loop (DISEMBL)
mpesskphqwqsdeasVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTImfgpdkcgtddkvctv
Low Complexity Region (SEG)
MPESSKPHQWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV
Disordered region (IsUnstruct)
****************VRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG********
Disordered Region (DISOPRED)
*****************RAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV
Disordered Region (DISEMBL)
***************SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV
Disordered Region (DISPRO)
*****KPHQWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPESSKPHQWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
A8XA40	623	Calnexin OS=Caenorhabditi	N/A	N/A	0.659	0.093	0.593	1e-14
P27824	592	Calnexin OS=Homo sapiens	yes	N/A	0.784	0.116	0.528	1e-14
Q5R440	592	Calnexin OS=Pongo abelii	yes	N/A	0.784	0.116	0.528	1e-14
P24643	593	Calnexin OS=Canis familia	yes	N/A	0.784	0.116	0.528	1e-14
P34652	619	Calnexin OS=Caenorhabditi	yes	N/A	0.625	0.088	0.625	3e-14
P35565	591	Calnexin OS=Rattus norveg	yes	N/A	0.784	0.116	0.514	1e-13
Q3SYT6	606	Calmegin OS=Bos taurus GN	no	N/A	0.636	0.092	0.649	1e-13
P35564	591	Calnexin OS=Mus musculus	yes	N/A	0.784	0.116	0.514	1e-13
P52194	611	Calmegin OS=Mus musculus	no	N/A	0.670	0.096	0.6	1e-12
O14967	610	Calmegin OS=Homo sapiens	no	N/A	0.636	0.091	0.614	4e-12

>sp|A8XA40|CALX_CAEBR Calnexin OS=Caenorhabditis briggsae GN=cnx-1 PE=3 SV=3

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV 88
           F+ QY+V F++  +CGG YLKLL+EG A +DL +F DKTPYTIMFGPDKCG   +V  +
Sbjct: 137 FIAQYDVKFEEGQECGGGYLKLLSEG-AEKDLASFQDKTPYTIMFGPDKCGASGQVHLI 194

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins. Required for embryogenesis and larval development under heat and ER stress conditions. May be important for germ cell development. Involved in neuronal necrotic cell death.
Caenorhabditis briggsae (taxid: 6238)

>sp|P27824|CALX_HUMAN Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +    +     P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFG
Sbjct: 132 SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFG 190

Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 191 PDKCGEDYKL 200

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Homo sapiens (taxid: 9606)

>sp|Q5R440|CALX_PONAB Calnexin OS=Pongo abelii GN=CANX PE=2 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +    +     P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFG
Sbjct: 132 SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFG 190

Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 191 PDKCGEDYKL 200

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Pongo abelii (taxid: 9601)

>sp|P24643|CALX_CANFA Calnexin OS=Canis familiaris GN=CANX PE=1 SV=3

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +    +     P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFG
Sbjct: 133 SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFG 191

Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 192 PDKCGEDYKL 201

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Canis familiaris (taxid: 9615)

>sp|P34652|CALX_CAEEL Calnexin OS=Caenorhabditis elegans GN=cnx-1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           FV+QY++ F++  +CGG YLKLL+EG A +DL  F DKT YTIMFGPDKCG   KV
Sbjct: 138 FVVQYDIKFEEGQECGGGYLKLLSEG-AEKDLANFQDKTAYTIMFGPDKCGATGKV 192

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins (By similarity). Required for embryogenesis and larval development under heat and ER stress conditions. May be important for germ cell development. Involved in neuronal necrotic cell death.

Caenorhabditis elegans (taxid: 6239)

>sp|P35565|CALX_RAT Calnexin OS=Rattus norvegicus GN=Canx PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +    +     P ++QYEV FQ+  +CGGAY+KLL++   L +L  F+DKTPYTIMFG
Sbjct: 133 SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTSEL-NLDQFHDKTPYTIMFG 191

Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 192 PDKCGEDYKL 201

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q3SYT6|CLGN_BOVIN Calmegin OS=Bos taurus GN=CLGN PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P V+QYEV FQD  DCGGAY+KLL +   L +L  F DKT YTIMFGPDKCG D K+
Sbjct: 132 PLVVQYEVNFQDGIDCGGAYIKLLADTDGL-NLENFYDKTSYTIMFGPDKCGEDYKL 187

Probably plays an important role in spermatogenesis. Binds calcium ions.

Bos taurus (taxid: 9913)

>sp|P35564|CALX_MOUSE Calnexin OS=Mus musculus GN=Canx PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +    +     P ++QYEV FQ+  +CGGAY+KLL++   L  L  F+DKTPYTIMFG
Sbjct: 133 SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTAELS-LDQFHDKTPYTIMFG 191

Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 192 PDKCGEDYKL 201

Calcium-binding protein that interacts with newly synthesized glycoproteins in the endoplasmic reticulum. It may act in assisting protein assembly and/or in the retention within the ER of unassembled protein subunits. It seems to play a major role in the quality control apparatus of the ER by the retention of incorrectly folded proteins. Partial T-cell antigen receptor complexes can escape the ER of immature thymocytes in association with their molecular chaperone to be expressed at low levels on the cell surface where they may function as a signaling complex to regulate thymocyte maturation.

Mus musculus (taxid: 10090)

>sp|P52194|CLGN_MOUSE Calmegin OS=Mus musculus GN=Clgn PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV 88
           P ++QYEV FQD  DCGGAY+KLL +   L  L  F DKT YTIMFGPDKCG D K+  +
Sbjct: 136 PLIVQYEVNFQDGIDCGGAYIKLLADTGDLI-LENFYDKTSYTIMFGPDKCGEDYKLHLI 194

Probably plays an important role in spermatogenesis. Binds calcium ions.

Mus musculus (taxid: 10090)

>sp|O14967|CLGN_HUMAN Calmegin OS=Homo sapiens GN=CLGN PE=1 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV FQD  DCGGAY+KLL +   L  L  F DKT Y IMFGPDKCG D K+
Sbjct: 136 PLIVQYEVNFQDGIDCGGAYIKLLADTDDLI-LENFYDKTSYIIMFGPDKCGEDYKL 191

Probably plays an important role in spermatogenesis. Binds calcium ions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
193704516	561	PREDICTED: calnexin [Acyrthosiphon pisum	0.636	0.099	0.75	9e-18
328777823	602	PREDICTED: calnexin isoform 1 [Apis mell	0.704	0.102	0.682	5e-17
380023076	602	PREDICTED: calnexin-like [Apis florea]	0.795	0.116	0.6	6e-17
449669019	278	PREDICTED: calnexin-like [Hydra magnipap	0.636	0.201	0.684	9e-17
195400004	662	GJ14222 [Drosophila virilis] gi|19414216	0.704	0.093	0.629	3e-16
195456760	583	GK17146 [Drosophila willistoni] gi|19417	0.704	0.106	0.629	6e-16
195061942	598	GH14000 [Drosophila grimshawi] gi|193891	0.704	0.103	0.629	7e-16
91080995	585	PREDICTED: similar to calnexin [Triboliu	0.647	0.097	0.649	1e-15
241237978	560	calnexin, putative [Ixodes scapularis] g	0.75	0.117	0.590	1e-15
198449836	607	GA26840, isoform A [Drosophila pseudoobs	0.704	0.102	0.596	1e-15

>gi|193704516|ref|XP_001945805.1| PREDICTED: calnexin [Acyrthosiphon pisum]

 Score = 94.4 bits (233), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/56 (75%), Positives = 46/56 (82%)

Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
            VIQYEV FQ  H CGGAYLKLLT+GP ++DLT FNDKTPY+IMFGPDKCG   KV
Sbjct: 125 LVIQYEVAFQKPHTCGGAYLKLLTDGPHIKDLTQFNDKTPYSIMFGPDKCGPTSKV 180

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777823|ref|XP_624907.2| PREDICTED: calnexin isoform 1 [Apis mellifera]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/63 (68%), Positives = 49/63 (77%), Gaps = 1/63 (1%)

Query: 23  YFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTD 82
           YF+ K P ++QYEV FQD  +CGGAYLKLLT  P  QDL  F+DKTPYTIMFGPDKCG D
Sbjct: 120 YFNDK-PLIVQYEVNFQDSQECGGAYLKLLTLHPEHQDLKKFHDKTPYTIMFGPDKCGND 178

Query: 83  DKV 85
            K+
Sbjct: 179 HKL 181

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023076|ref|XP_003695355.1| PREDICTED: calnexin-like [Apis florea]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 50/70 (71%)

Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +  T ++    P ++QYEV FQD  +CGGAYLKLLT  P  QDL  F+DKTPYTIMFG
Sbjct: 112 STKLFTSFYFNDKPLIVQYEVNFQDGQECGGAYLKLLTLHPEHQDLKKFHDKTPYTIMFG 171

Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 172 PDKCGNDHKL 181

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449669019|ref|XP_004206921.1| PREDICTED: calnexin-like [Hydra magnipapillata]

 Score = 90.9 bits (224), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV FQ+ H+CGGAY+KLL+E P+L +L  FNDKTPYTIMFGPDKCG D K+
Sbjct: 119 PLIVQYEVRFQNTHECGGAYIKLLSESPSL-NLKVFNDKTPYTIMFGPDKCGGDSKI 174

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195400004|ref|XP_002058608.1| GJ14222 [Drosophila virilis] gi|194142168|gb|EDW58576.1| GJ14222 [Drosophila virilis]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 46/62 (74%)

Query: 24  FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
           F    P V+QYEV  Q+  +CGG+YLKLL+ G   +DLT FNDKTPYTIMFGPDKCG D 
Sbjct: 149 FKANKPLVVQYEVTMQEGQECGGSYLKLLSSGKETEDLTTFNDKTPYTIMFGPDKCGNDV 208

Query: 84  KV 85
           K+
Sbjct: 209 KM 210

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195456760|ref|XP_002075275.1| GK17146 [Drosophila willistoni] gi|194171360|gb|EDW86261.1| GK17146 [Drosophila willistoni]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 45/62 (72%)

Query: 24  FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
           F    P V+QYEV  QD  +CGG+YLKLL+ G    DLT FNDKTPYTIMFGPDKCG + 
Sbjct: 119 FKANKPLVVQYEVTMQDGQECGGSYLKLLSTGQDTADLTKFNDKTPYTIMFGPDKCGGNK 178

Query: 84  KV 85
           K+
Sbjct: 179 KI 180

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195061942|ref|XP_001996102.1| GH14000 [Drosophila grimshawi] gi|193891894|gb|EDV90760.1| GH14000 [Drosophila grimshawi]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 24  FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
           F  + P V+QYEV  Q+  +CGG+YLKLL+ G   +DLT FNDKTPYTIMFGPDKCG D 
Sbjct: 138 FKPEKPLVVQYEVTMQEGQECGGSYLKLLSAGKETEDLTTFNDKTPYTIMFGPDKCGNDV 197

Query: 84  KV 85
           K+
Sbjct: 198 KM 199

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91080995|ref|XP_975051.1| PREDICTED: similar to calnexin [Tribolium castaneum] gi|270005348|gb|EFA01796.1| hypothetical protein TcasGA2_TC007397 [Tribolium castaneum]

 Score = 87.4 bits (215), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV+FQD  +CGGAYLKLLT+  A ++L  F+DKTPY+IMFGPDKCG D K+
Sbjct: 134 PLIVQYEVIFQDGQECGGAYLKLLTQDSASKNLNNFHDKTPYSIMFGPDKCGNDHKL 190

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241237978|ref|XP_002401232.1| calnexin, putative [Ixodes scapularis] gi|215496133|gb|EEC05774.1| calnexin, putative [Ixodes scapularis]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 49/66 (74%)

Query: 23  YFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTD 82
           Y     PFV+QYEV FQ+  DCGGAY+KLL++    +DL  F+DK+PYTIMFGPDKCGTD
Sbjct: 115 YLFEHKPFVLQYEVQFQEGQDCGGAYIKLLSDLEENRDLRQFHDKSPYTIMFGPDKCGTD 174

Query: 83  DKVCTV 88
            K+  +
Sbjct: 175 HKLHLI 180

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198449836|ref|XP_002136972.1| GA26840, isoform A [Drosophila pseudoobscura pseudoobscura] gi|198130777|gb|EDY67530.1| GA26840, isoform A [Drosophila pseudoobscura pseudoobscura]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 46/62 (74%)

Query: 24  FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
           F  + P V+QYEV  Q+  DCGG+Y+KLL+ G    +L +FNDKTPYTIMFGPDKCG D 
Sbjct: 142 FKAEKPLVVQYEVTLQEGQDCGGSYIKLLSAGKETDNLKSFNDKTPYTIMFGPDKCGNDV 201

Query: 84  KV 85
           K+
Sbjct: 202 KL 203

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
FB|FBgn0015622	677	Cnx99A "Calnexin 99A" [Drosoph	0.647	0.084	0.649	7.9e-16
UNIPROTKB|D6RFL1	131	CANX "Calnexin" [Homo sapiens	0.681	0.458	0.612	1.3e-15
UNIPROTKB|H0Y9H1	190	CANX "Calnexin" [Homo sapiens	0.681	0.315	0.612	1.3e-15
UNIPROTKB|H0Y9Q7	170	CANX "Calnexin" [Homo sapiens	0.681	0.352	0.612	1.3e-15
UNIPROTKB|D6RGY2	308	CANX "Calnexin" [Homo sapiens	0.681	0.194	0.612	1.6e-15
FB|FBgn0264077	639	Cnx14D "Calnexin 14D" [Drosoph	0.704	0.097	0.580	3.2e-15
UNIPROTKB|J9NUT1	399	CANX "Calnexin" [Canis lupus f	0.681	0.150	0.612	5e-15
FB|FBgn0030377	570	CG1924 [Drosophila melanogaste	0.670	0.103	0.593	5.4e-15
ZFIN|ZDB-GENE-040426-2797	600	canx "calnexin" [Danio rerio (	0.681	0.1	0.645	6e-15
UNIPROTKB|B4E2T8	484	CANX "Calnexin" [Homo sapiens	0.681	0.123	0.612	8.2e-15

FB|FBgn0015622 Cnx99A "Calnexin 99A" [Drosophila melanogaster (taxid:7227)]

 Score = 208 (78.3 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 37/57 (64%), Positives = 44/57 (77%)

Query:    29 PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
             P V+QYEV  Q+  +CGG+YLKLL+ G   + L AFNDKTPYTIMFGPDKCG D K+
Sbjct:   223 PLVVQYEVTLQEGQECGGSYLKLLSAGKDTEQLKAFNDKTPYTIMFGPDKCGNDVKM 279

GO:0005886 "plasma membrane" evidence=ISS;IDA;NAS

GO:0005783 "endoplasmic reticulum" evidence=ISS;NAS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=IEA;NAS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0097038 "perinuclear endoplasmic reticulum" evidence=IDA

GO:0010522 "regulation of calcium ion transport into cytosol" evidence=IMP

GO:0001895 "retina homeostasis" evidence=IMP

GO:0016063 "rhodopsin biosynthetic process" evidence=IMP

UNIPROTKB|D6RFL1 CANX "Calnexin" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D 
Sbjct:    33 FDTK-PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDY 90

Query:    84 KV 85
             K+
Sbjct:    91 KL 92

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0032839 "dendrite cytoplasm" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0048488 "synaptic vesicle endocytosis" evidence=IEA

GO:0072583 "clathrin-mediated endocytosis" evidence=IEA

UNIPROTKB|H0Y9H1 CANX "Calnexin" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D 
Sbjct:    24 FDTK-PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDY 81

Query:    84 KV 85
             K+
Sbjct:    82 KL 83

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|H0Y9Q7 CANX "Calnexin" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D 
Sbjct:   110 FDTK-PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDY 167

Query:    84 KV 85
             K+
Sbjct:   168 KL 169

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|D6RGY2 CANX "Calnexin" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D 
Sbjct:    77 FDTK-PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDY 134

Query:    84 KV 85
             K+
Sbjct:   135 KL 136

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

FB|FBgn0264077 Cnx14D "Calnexin 14D" [Drosophila melanogaster (taxid:7227)]

 Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 36/62 (58%), Positives = 44/62 (70%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F    P V+QYE+  Q+  DCGG+YLKLL+ G   + L  FNDKTPYTIMFGPDKCG + 
Sbjct:   131 FKSNKPLVVQYELTLQEGQDCGGSYLKLLSAGKGTEQLNRFNDKTPYTIMFGPDKCGNNL 190

Query:    84 KV 85
             K+
Sbjct:   191 KM 192

GO:0005789 "endoplasmic reticulum membrane" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|J9NUT1 CANX "Calnexin" [Canis lupus familiaris (taxid:9615)]

 Score = 196 (74.1 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D 
Sbjct:   142 FDTK-PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDY 199

Query:    84 KV 85
             K+
Sbjct:   200 KL 201

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

FB|FBgn0030377 CG1924 [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 35/59 (59%), Positives = 42/59 (71%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTD 82
             F  + P V+QYE+  Q   +CGG+YLKLL+ G   + L  FNDKTPYTIMFGPDKCG D
Sbjct:   142 FKSEKPLVVQYEITIQKGQECGGSYLKLLSAGKETEQLQTFNDKTPYTIMFGPDKCGKD 200

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2797 canx "calnexin" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 6.0e-15, P = 6.0e-15
 Identities = 40/62 (64%), Positives = 46/62 (74%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ   DCGGAY+KLL++ P L DL  F DKTPYTIMFGPDKCG D 
Sbjct:   149 FDTK-PLIVQYEVNFQTGIDCGGAYVKLLSQTPDL-DLEEFVDKTPYTIMFGPDKCGEDY 206

Query:    84 KV 85
             K+
Sbjct:   207 KL 208

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|B4E2T8 CANX "Calnexin" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 8.2e-15, P = 8.2e-15
 Identities = 38/62 (61%), Positives = 48/62 (77%)

Query:    24 FHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDD 83
             F  K P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D 
Sbjct:    33 FDTK-PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDY 90

Query:    84 KV 85
             K+
Sbjct:    91 KL 92

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0032839 "dendrite cytoplasm" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043197 "dendritic spine" evidence=IEA

GO:0048488 "synaptic vesicle endocytosis" evidence=IEA

GO:0072583 "clathrin-mediated endocytosis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27824	CALX_HUMAN	No assigned EC number	0.5285	0.7840	0.1165	yes	N/A
P24643	CALX_CANFA	No assigned EC number	0.5285	0.7840	0.1163	yes	N/A
Q5R440	CALX_PONAB	No assigned EC number	0.5285	0.7840	0.1165	yes	N/A
P34652	CALX_CAEEL	No assigned EC number	0.625	0.625	0.0888	yes	N/A
P35565	CALX_RAT	No assigned EC number	0.5142	0.7840	0.1167	yes	N/A
P35564	CALX_MOUSE	No assigned EC number	0.5142	0.7840	0.1167	yes	N/A
P29402	CALX1_ARATH	No assigned EC number	0.5454	0.625	0.1037	yes	N/A
Q6Q487	CALX_ASPFU	No assigned EC number	0.5535	0.625	0.0976	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
pfam00262	359	pfam00262, Calreticulin, Calreticulin family	7e-24
cd01268	135	cd01268, PTB_Numb, Numb Phosphotyrosine-binding (P	4e-06

>gnl|CDD|215825 pfam00262, Calreticulin, Calreticulin family

 Score = 92.0 bits (229), Expect = 7e-24
 Identities = 31/56 (55%), Positives = 38/56 (67%), Gaps = 3/56 (5%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK 84
             V+QYEV  Q   DCGGAY+KLL++     D   F+ +TPYTIMFGPD CG+D K
Sbjct: 72  TLVVQYEVKLQQGIDCGGAYIKLLSKDF---DQKDFSGETPYTIMFGPDICGSDTK 124

Length = 359

>gnl|CDD|241298 cd01268, PTB_Numb, Numb Phosphotyrosine-binding (PTB) domain

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 14/20 (70%), Positives = 17/20 (85%)

Query: 8  HQWQSDEASVRAGTCYFHVK 27
          HQWQ+DE +VR+GTC F VK
Sbjct: 1  HQWQADEEAVRSGTCSFPVK 20

Numb is a membrane associated adaptor protein which plays critical roles in cell fate determination. Numb proteins are involved in control of asymmetric cell division and cell fate choice, endocytosis, cell adhesion, cell migration, ubiquitination of specific substrates and a number of signaling pathways (Notch, Hedgehog, p53). Mutations in Numb plays a critical role in disease (cancer). Numb has an N-terminal PTB domain and a C-terminal NumbF domain. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
PF00262	367	Calreticulin: Calreticulin family; InterPro: IPR00	100.0
KOG0675|consensus	558		100.0
KOG0674|consensus	406		99.96
KOG3537|consensus	543		97.56

>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes

Probab=100.00  E-value=2.4e-37  Score=246.17  Aligned_cols=73  Identities=48%  Similarity=0.836  Sum_probs=61.1

Q ss_pred             cccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCccccc-ccCCCCCCceEEeecCCcCCCCeEEEC
Q psy70            13 DEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDL-TAFNDKTPYTIMFGPDKCGTDDKVCTV   88 (88)
Q Consensus        13 ~~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~-~~f~~~tpY~IMFGPD~Cg~~~kvHfI   88 (88)
                      +-||++|++||+|++|+||||||||+|++|+|||||||||+++.   ++ ++|+++|||+||||||+||.++|||||
T Consensus        61 yaIS~kl~kPf~~~~k~LVvQYeVK~q~~idCGGaYIKLL~~~~---~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI  134 (367)
T PF00262_consen   61 YAISAKLDKPFSNKDKDLVVQYEVKFQQGIDCGGAYIKLLPASF---DQEENFSDKTPYSIMFGPDKCGSSNKVHFI  134 (367)
T ss_dssp             EEEEEEEEEEE-STTS-EEEEEEEEETT--SEEE--EEEEBTTS---SGGGG-STTS-ESEEEEEEEESTTEEEEEE
T ss_pred             hhhhhhCCCccccCCCcEEEEEEEEeecceeccceEEEEecCcc---chhhhcCCCCCceEEeCCccCCCCceEEEE
Confidence            57999999999999999999999999999999999999999964   44 499999999999999999999999998

It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....

>KOG0675|consensus

Probab=100.00  E-value=4.6e-34  Score=235.36  Aligned_cols=76  Identities=51%  Similarity=0.912  Sum_probs=72.4

Q ss_pred             cccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCcccccccCCCCCCceEEeecCCcCCCCeEEEC
Q psy70            13 DEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV   88 (88)
Q Consensus        13 ~~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~Cg~~~kvHfI   88 (88)
                      |-|++.|++||++..++||||||||+|+|++|||||||||+...+..++++|+++|||+||||||+||.++|||||
T Consensus       102 haI~a~L~~P~~~~~~plVVQYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG~~~kvhFI  177 (558)
T KOG0675|consen  102 HAISAELEEPFNFKEKPLVVQYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCGETNKVHFI  177 (558)
T ss_pred             hHHHhhhcCCcccCCCCeEEEEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccCCcccEEEE
Confidence            5689999999999999999999999999999999999999995447899999999999999999999999999998

>KOG0674|consensus

Probab=99.96  E-value=6.9e-30  Score=203.42  Aligned_cols=71  Identities=39%  Similarity=0.723  Sum_probs=65.5

Q ss_pred             ccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCcccccccCCCCCCceEEeecCCcCCC-CeEEEC
Q psy70            14 EASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTD-DKVCTV   88 (88)
Q Consensus        14 ~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~Cg~~-~kvHfI   88 (88)
                      .+||+| +||+|++|+|||||.||++|.|+|||||||||++   +.|+.+|+++|||.||||||+||++ +|||+|
T Consensus        77 a~sa~F-~~FsnK~kTLv~q~tVkheQ~~dcgggyiKl~~~---d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvi  148 (406)
T KOG0674|consen   77 AISAKF-KPFSNKGKTLVIQFTVKHEQKIDCGGGYIKLFPA---DLDQTDFHGESPYNIMFGPDICGFGTKKVHVI  148 (406)
T ss_pred             eeeccc-ccccccCceEEEEEEecccccccCCceeEEeeec---ccchhhcCCCcccccccCCcccCCCCceEEEE
Confidence            466766 6699999999999999999999999999999998   5799999999999999999999995 599987

>KOG3537|consensus

Probab=97.56  E-value=1.8e-05  Score=66.25  Aligned_cols=44  Identities=50%  Similarity=0.902  Sum_probs=37.6

Q ss_pred             CCCCCCCccccccccceecCceeeecCCceEEEE----EEEeecc-cccCcceEE
Q psy70             1 MPESSKPHQWQSDEASVRAGTCYFHVKVPFVIQY----EVMFQDK-HDCGGAYLK   50 (88)
Q Consensus         1 ~~~~~~~~~~~~~~~s~~l~kpf~~~~k~LVvQY----EVk~q~~-idCGGaYIK   50 (88)
                      +||+|||||||.||.+.|..++-      |-|.|    ||--.+| ..|.+|--+
T Consensus        16 Vpe~SkphQWQ~DE~aVRtgtCs------F~VkYLG~VEV~ESRGM~vCE~AlK~   64 (543)
T KOG3537|consen   16 VPEASKPHQWQADEEAVRTGTCS------FPVKYLGHVEVFESRGMQVCEDALKV   64 (543)
T ss_pred             CCCCCCccccccchhhhccceee------eeeeeeeeEEEecccCcHHHHHHHHH
Confidence            69999999999999999998887      77888    8877777 789998433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	88
1jhn_A	424	Crystal Structure Of The Lumenal Domain Of Calnexin		1e-15
2nmb_A	160	Dnumb Ptb Domain Complexed With A Phosphotyrosine P		3e-06
3pos_A	265	Crystal Structure Of The Globular Domain Of Human C		1e-05
3rg0_A	332	Structural And Functional Relationships Between The		2e-05
3o0v_A	273	Crystal Structure Of The Calreticulin Lectin Domain		2e-05
3f0w_A	168	Human Numb-Like Protein, Phosphotyrosine Interactio		2e-04
3o0w_A	273	Structural Basis Of Carbohydrate Recognition By Cal		2e-04

>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin Length = 424

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 16  SVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFG 75
           S +    +     P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFG
Sbjct: 89  SAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFG 147
Query: 76  PDKCGTDDKV 85
           PDKCG D K+
Sbjct: 148 PDKCGEDYKL 157

>pdb|2NMB|A Chain A, Dnumb Ptb Domain Complexed With A Phosphotyrosine Peptide, Nmr, Ensemble Of Structures Length = 160

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 23/27 (85%)
Query: 1  MPESSKPHQWQSDEASVRAGTCYFHVK 27
          +PESSKPHQWQ+DE +VR+ TC F VK
Sbjct: 9  VPESSKPHQWQADEEAVRSATCSFSVK 35

>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human Calreticulin Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
            V+Q+ V  +   DCGG Y+KL    P   D T  +  + Y IMFGPD CG
Sbjct: 82  LVVQFTVKHEQNIDCGGGYVKLF---PNSLDQTDMHGDSEYNIMFGPDICG 129

>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin And Arm Domains Of Calreticulin Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
            V+Q+ V  +   DCGG Y+KL   G   +D+      + Y IMFGPD CG
Sbjct: 77  LVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICG 124

>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain Length = 273

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
            V+Q+ V  +   DCGG Y+KL   G   +D+      + Y IMFGPD CG
Sbjct: 77  LVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDMHG---DSEYNIMFGPDICG 124

>pdb|3F0W|A Chain A, Human Numb-Like Protein, Phosphotyrosine Interaction Domain Length = 168

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 4  SSKPHQWQSDEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEG 55
          +S+PHQWQ+DE +VR GTC F V+    ++ E   +  H C  A  KL   G
Sbjct: 24 ASRPHQWQADEDAVRKGTCSFPVRYLGHVEVE-ESRGMHVCEDAVKKLKAMG 74

>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By Calreticulin Length = 273

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 30  FVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCG 80
            V+Q+ V  +   DCGG Y+KL   G   +D       + Y I FGPD CG
Sbjct: 77  LVVQFTVKHEQNIDCGGGYVKLFPSGLDQKDXHG---DSEYNIXFGPDICG 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	88
1jhn_A	424	Calnexin; jelly-roll, beta sandwich, chaperone; 2.	4e-21
3rg0_A	332	Calreticulin; beta-sandwich, chaperone, monoglucos	6e-20
3pow_A	265	Calreticulin; legume lectin fold, CNX/CRT family,	6e-17

>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1 Length = 424

 Score = 84.4 bits (208), Expect = 4e-21
 Identities = 36/57 (63%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+
Sbjct: 102 PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKL 157

>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus} Length = 332

 Score = 80.5 bits (198), Expect = 6e-20
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK 84
             V+Q+ V  +   DCGG Y+KL   G    D    +  + Y IMFGPD CG   K
Sbjct: 76  TLVVQFTVKHEQNIDCGGGYVKLFPSG---LDQKDMHGDSEYNIMFGPDICGPGTK 128

>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A* Length = 265

 Score = 71.7 bits (175), Expect = 6e-17
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDK 84
             V+Q+ V  +   DCGG Y+KL        D T  +  + Y IMFGPD CG   K
Sbjct: 81  TLVVQFTVKHEQNIDCGGGYVKLFPNS---LDQTDMHGDSEYNIMFGPDICGPGTK 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3pow_A	265	Calreticulin; legume lectin fold, CNX/CRT family,	100.0
3rg0_A	332	Calreticulin; beta-sandwich, chaperone, monoglucos	100.0
1jhn_A	424	Calnexin; jelly-roll, beta sandwich, chaperone; 2.	100.0

>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*

Probab=100.00  E-value=4.1e-39  Score=246.63  Aligned_cols=72  Identities=33%  Similarity=0.623  Sum_probs=68.5

Q ss_pred             cccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCcccccccCCCCCCceEEeecCCcCC-CCeEEEC
Q psy70            13 DEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGT-DDKVCTV   88 (88)
Q Consensus        13 ~~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~Cg~-~~kvHfI   88 (88)
                      +-||++| +||+|++|+||||||||+|++|+|||||||||++   ++|+++|+++|||+||||||+||+ ++|||||
T Consensus        66 yaISakl-~pf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~---~~~~~~f~~~tpY~IMFGPD~CG~~~~kvHfI  138 (265)
T 3pow_A           66 YALSASF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPN---SLDQTDMHGDSEYNIMFGPDICGPGTKKVHVI  138 (265)
T ss_dssp             EEEEEEE-EEECCTTSCEEEEEEEECTTCCSEEECCEEEECT---TCCGGGCCTTSCCSEEEEEEEESTTCEEEEEE
T ss_pred             hhhhccc-CCccCCCCCEEEEEEEEeccccccCceEEEeecC---CCCHhhcCCCCCceEEecCcccCCCCCEEEEE
Confidence            5689999 9999999999999999999999999999999996   479999999999999999999998 7899998

>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}

Probab=100.00  E-value=3.9e-38  Score=247.23  Aligned_cols=72  Identities=32%  Similarity=0.611  Sum_probs=68.3

Q ss_pred             cccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCcccccccCCCCCCceEEeecCCcCC-CCeEEEC
Q psy70            13 DEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGT-DDKVCTV   88 (88)
Q Consensus        13 ~~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~Cg~-~~kvHfI   88 (88)
                      +-|||+| +||+|++|+||||||||+|++|+|||||||||++   ++|+++|+++|||+||||||+||+ ++|||||
T Consensus        61 yAISakf-~pf~n~~k~LVvQYeVK~e~~idCGGaYiKLl~~---~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I  133 (332)
T 3rg0_A           61 YALSAKF-EPFSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPS---GLDQKDMHGDSEYNIMFGPDICGPGTKKVHVI  133 (332)
T ss_dssp             EEEEEEE-EEECCTTSCEEEEEEEEETTCCSEEECCEEEECS---SCCGGGCCTTSCCSEEEEEEEETTTEEEEEEE
T ss_pred             hhhhccc-CCccCCCCCEEEEEEEEcccccccCceEEEeecC---cCCHhhcCCCCcceEEecCcccCCCCCEEEEE
Confidence            4689999 9999999999999999999999999999999996   479999999999999999999998 6799998

>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1

Probab=100.00  E-value=5.5e-38  Score=252.42  Aligned_cols=75  Identities=48%  Similarity=0.901  Sum_probs=71.9

Q ss_pred             cccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCcccccccCCCCCCceEEeecCCcCCCCeEEEC
Q psy70            13 DEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV   88 (88)
Q Consensus        13 ~~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~Cg~~~kvHfI   88 (88)
                      +-||++|++||+|++|+||||||||+|++|+|||||||||+... ++++++|+++|||+||||||+||.++|||||
T Consensus        86 yaISa~~~kpf~~~~k~LVvQYeVk~q~~idCGGaYiKLl~~~~-~~d~~~f~~~TpY~IMFGPD~CG~~~kvH~I  160 (424)
T 1jhn_A           86 HAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTP-ELNLDQFHDKTPYTIMFGPDKCGEDYKLHFI  160 (424)
T ss_dssp             CEEEEEEEEEECSSSSCEEEEEEECCTTCCSEEECCEEEEBCCS-SCCGGGCCSSCCEEEEEEEEEESSCCEEEEE
T ss_pred             HHHHHhhcCccccCCCCEEEEEEEEecccccccceEEEeecCcc-cCCHhHcCCCCCceEeccCCccCCCCeEEEE
Confidence            56999999999999999999999999999999999999999865 6899999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	88
d1jhna4	249	b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Cani	7e-21
d1wj1a_	156	b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 1	1e-05
d1ddma_	135	b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanoga	0.001

>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]} Length = 249

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

 Score = 80.7 bits (199), Expect = 7e-21
 Identities = 36/57 (63%), Positives = 46/57 (80%), Gaps = 1/57 (1%)

Query: 29  PFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKV 85
           P ++QYEV FQ+  +CGGAY+KLL++ P L +L  F+DKTPYTIMFGPDKCG D K+
Sbjct: 86  PLIVQYEVNFQNGIECGGAYVKLLSKTPEL-NLDQFHDKTPYTIMFGPDKCGEDYKL 141

>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]} Length = 156

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 1e-05
 Identities = 15/25 (60%), Positives = 18/25 (72%)

Query: 3  ESSKPHQWQSDEASVRAGTCYFHVK 27
           +S+PHQWQ+DE  VR G C F VK
Sbjct: 7  GASRPHQWQTDEEGVRTGKCSFPVK 31

>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 135

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.4 bits (76), Expect = 0.001
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 8  HQWQSDEASVRAGTCYFHVK 27
          HQWQ+DE +VR+ TC F VK
Sbjct: 1  HQWQADEEAVRSATCSFSVK 20

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d1jhna4	249	Calnexin {Dog (Canis familiaris) [TaxId: 9615]}	100.0
d1wj1a_	156	Numb {Mouse (Mus musculus) [TaxId: 10090]}	81.19

>d1jhna4 b.29.1.12 (A:61-262,A:412-458) Calnexin {Dog (Canis familiaris) [TaxId: 9615]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Calnexin/calreticulin
domain: Calnexin
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=100.00  E-value=4.6e-40  Score=247.64  Aligned_cols=75  Identities=48%  Similarity=0.901  Sum_probs=71.8

Q ss_pred             cccceecCceeeecCCceEEEEEEEeecccccCcceEEeecCCCcccccccCCCCCCceEEeecCCcCCCCeEEEC
Q psy70            13 DEASVRAGTCYFHVKVPFVIQYEVMFQDKHDCGGAYLKLLTEGPALQDLTAFNDKTPYTIMFGPDKCGTDDKVCTV   88 (88)
Q Consensus        13 ~~~s~~l~kpf~~~~k~LVvQYEVk~q~~idCGGaYIKLl~~~~~~~~~~~f~~~tpY~IMFGPD~Cg~~~kvHfI   88 (88)
                      +-||++|++||++++|+||||||||+|++++|||||||||+.+. ++++++|+++|||+||||||+||.++|||||
T Consensus        70 yaIs~~l~~pf~~~~k~LVvQYeVk~q~~~~CGGaYiKLl~~~~-~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI  144 (249)
T d1jhna4          70 HAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTP-ELNLDQFHDKTPYTIMFGPDKCGEDYKLHFI  144 (249)
T ss_dssp             CEEEEEEEEEECSSSSCEEEEEEECCTTCCSEEECCEEEEBCCS-SCCGGGCCSSCCEEEEEEEEEESSCCEEEEE
T ss_pred             hhhhccCCCCcccCCCCEEEEEEeeeccCccccceEEEeecCcc-cCCHhHcCCCCCceEEeCCcccCCCCEEEEE
Confidence            46899999999999999999999999999999999999999875 6899999999999999999999999999998

>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.19  E-value=0.18  Score=32.19  Aligned_cols=18  Identities=61%  Similarity=1.182  Sum_probs=15.0

Q ss_pred             CCCCCccccccccceecC
Q psy70             3 ESSKPHQWQSDEASVRAG   20 (88)
Q Consensus         3 ~~~~~~~~~~~~~s~~l~   20 (88)
                      +.|+|++|.+++......
T Consensus         7 ~~~~~~~w~~~~~~~~~~   24 (156)
T d1wj1a_           7 GASRPHQWQTDEEGVRTG   24 (156)
T ss_dssp             CCCCSCSSHHHHHHTTTT
T ss_pred             CCCCCccCCCCHHHhccC
Confidence            679999999998887753