Psyllid ID: psy7113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80----
Protein Sequence
MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msmpwiltdhilktkepsmmeyvlypldlyndsaHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Flexible Loop (DISEMBL)
MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Low Complexity Region (SEG)
MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Disordered region (IsUnstruct)
****WILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFW*
Disordered Region (DISOPRED)
MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Disordered Region (DISEMBL)
MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Disordered Region (DISPRO)
*SMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARFTFWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	84	2.2.26 [Sep-21-2011]
Q299G2	1291	Cytoplasmic FMR1-interact	yes	N/A	0.928	0.060	0.961	6e-40
Q9VF87	1291	Cytoplasmic FMR1-interact	yes	N/A	0.928	0.060	0.948	5e-39
Q6GQD1	1253	Cytoplasmic FMR1-interact	N/A	N/A	0.928	0.062	0.858	3e-35
Q96F07	1278	Cytoplasmic FMR1-interact	yes	N/A	0.928	0.061	0.858	3e-35
Q5SQX6	1253	Cytoplasmic FMR1-interact	yes	N/A	0.928	0.062	0.858	3e-35
Q5R414	1253	Cytoplasmic FMR1-interact	yes	N/A	0.928	0.062	0.858	3e-35
Q90YM8	1253	Cytoplasmic FMR1-interact	no	N/A	0.928	0.062	0.846	5e-34
Q7L576	1253	Cytoplasmic FMR1-interact	no	N/A	0.928	0.062	0.846	1e-33
Q7TMB8	1253	Cytoplasmic FMR1-interact	no	N/A	0.928	0.062	0.846	1e-33
O44518	1262	Cytoplasmic FMR1-interact	yes	N/A	0.928	0.061	0.756	3e-29

>sp|Q299G2|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1

 Score =  162 bits (410), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VF87|CYFIP_DROME Cytoplasmic FMR1-interacting protein OS=Drosophila melanogaster GN=Sra-1 PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSA+YALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAYYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Plays a role in guidance and morphology of central and peripheral axons and in synaptic morphology. Also required for formation of cell membrane protrusions and for bristle development.

Drosophila melanogaster (taxid: 7227)

>sp|Q6GQD1|CYFP2_XENLA Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2 PE=2 SV=1

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 75/78 (96%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct: 641 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 700

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLS+QIFA+YK ++ 
Sbjct: 701 FVYKLSDQIFAYYKAMSG 718

Involved in T-cell adhesion and p53-dependent induction of apoptosis. Does not bind RNA.

Xenopus laevis (taxid: 8355)

>sp|Q96F07|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 75/78 (96%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct: 666 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 725

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 726 FVYKLADQIFAYYKAMAG 743

Involved in T-cell adhesion and p53/TP53-dependent induction of apoptosis. Does not bind RNA.

Homo sapiens (taxid: 9606)

>sp|Q5SQX6|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2

 Score =  147 bits (370), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 75/78 (96%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct: 641 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 700

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 701 FVYKLADQIFAYYKAMAG 718

Involved in T-cell adhesion and p53-dependent induction of apoptosis (By similarity). Does not bind RNA.

Mus musculus (taxid: 10090)

>sp|Q5R414|CYFP2_PONAB Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2 PE=2 SV=1

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/78 (85%), Positives = 75/78 (96%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct: 641 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 700

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 701 FVYKLADQIFAYYKAMAG 718

Involved in T-cell adhesion and p53-dependent induction of apoptosis. Does not bind RNA.

Pongo abelii (taxid: 9601)

>sp|Q90YM8|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio GN=cyfip1 PE=2 SV=1

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 73/78 (93%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F+KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTKFKKQFLYDEIEAEVNLCFDQ 701

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVIAG 719

Involved in formation of membrane ruffles and lamellipodia protrusions and in axon outgrowth. Binds to F-actin but not to RNA.

Danio rerio (taxid: 7955)

>sp|Q7L576|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 72/78 (92%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQ 701

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVMAG 719

Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit is an adapter between EIF4E and FMR1. Promotes the translation repression activity of FMR1 in brain probably by mediating its association with EIF4E and mRNA (By similarity). Regulates formation of membrane ruffles and lamellipodia. Plays a role in axon outgrowth. Binds to F-actin but not to RNA. Part of the WAVE complex that regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1. Regulator of epithelial morphogenesis. May act as an invasion suppressor in cancers.

Homo sapiens (taxid: 9606)

>sp|Q7TMB8|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1 PE=1 SV=1

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 72/78 (92%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTKFNKQFLYDEIEAEVNLCFDQ 701

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVMAG 719

Component of the CYFIP1-EIF4E-FMR1 complex which binds to the mRNA cap and mediates translational repression. In the CYFIP1-EIF4E-FMR1 complex this subunit is an adapter between EIF4E and FMR1. Promotes the translation repression activity of FMR1 in brain probably by mediating its association with EIF4E and mRNA (By similarity). Regulates formation of membrane ruffles and lamellipodia. Plays a role in axon outgrowth. Binds to F-actin but not to RNA. Part of the WAVE complex that regulates actin filament reorganization via its interaction with the Arp2/3 complex. Actin remodeling activity is regulated by RAC1. Regulator of epithelial morphogenesis. May act as an invasion suppressor in cancers.

Mus musculus (taxid: 10090)

>sp|O44518|CYFIP_CAEEL Cytoplasmic FMR1-interacting protein homolog OS=Caenorhabditis elegans GN=gex-2 PE=1 SV=4

 Score =  127 bits (318), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 66/78 (84%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTD+IL   EPS++E  LY LDLYND+A Y+L  F KQFLYDEVEAEVNLCFDQ
Sbjct: 644 MSMPWILTDYILSCNEPSLIESALYQLDLYNDAAQYSLFNFNKQFLYDEVEAEVNLCFDQ 703

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSE +F HYKQLA+
Sbjct: 704 FVYKLSEMVFTHYKQLAS 721

Required for initial steps of body morphogenesis.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
193610539	1285	PREDICTED: cytoplasmic FMR1-interacting	0.928	0.060	0.987	6e-39
125774684	1291	GA18534 [Drosophila pseudoobscura pseudo	0.928	0.060	0.961	3e-38
195113971	1291	GI10855 [Drosophila mojavensis] gi|19391	0.928	0.060	0.961	3e-38
194764855	1291	GF22994 [Drosophila ananassae] gi|190614	0.928	0.060	0.961	3e-38
195445272	1291	GK11135 [Drosophila willistoni] gi|19416	0.928	0.060	0.961	3e-38
195053794	1291	GH19133 [Drosophila grimshawi] gi|193895	0.928	0.060	0.961	3e-38
195399792	1291	GJ14463 [Drosophila virilis] gi|19414206	0.928	0.060	0.961	3e-38
195570684	1243	GD19013 [Drosophila simulans] gi|1941992	0.928	0.062	0.948	2e-37
21357451	1291	specifically Rac1-associated protein 1 [	0.928	0.060	0.948	2e-37
21483480	1188	LD47929p [Drosophila melanogaster]	0.928	0.065	0.948	2e-37

>gi|193610539|ref|XP_001949649.1| PREDICTED: cytoplasmic FMR1-interacting protein-like [Acyrthosiphon pisum]

 Score =  164 bits (415), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 77/78 (98%), Positives = 78/78 (100%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 661 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 720

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA+
Sbjct: 721 FVYKLSEQIFAHYKQLAS 738

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125774684|ref|XP_001358600.1| GA18534 [Drosophila pseudoobscura pseudoobscura] gi|195145496|ref|XP_002013728.1| GL23243 [Drosophila persimilis] gi|121991283|sp|Q299G2.1|CYFIP_DROPS RecName: Full=Cytoplasmic FMR1-interacting protein; AltName: Full=Specifically Rac1-associated protein 1 gi|54638339|gb|EAL27741.1| GA18534 [Drosophila pseudoobscura pseudoobscura] gi|194102671|gb|EDW24714.1| GL23243 [Drosophila persimilis]

 Score =  162 bits (410), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113971|ref|XP_002001541.1| GI10855 [Drosophila mojavensis] gi|193918135|gb|EDW17002.1| GI10855 [Drosophila mojavensis]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194764855|ref|XP_001964543.1| GF22994 [Drosophila ananassae] gi|190614815|gb|EDV30339.1| GF22994 [Drosophila ananassae]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445272|ref|XP_002070252.1| GK11135 [Drosophila willistoni] gi|194166337|gb|EDW81238.1| GK11135 [Drosophila willistoni]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053794|ref|XP_001993811.1| GH19133 [Drosophila grimshawi] gi|193895681|gb|EDV94547.1| GH19133 [Drosophila grimshawi]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399792|ref|XP_002058503.1| GJ14463 [Drosophila virilis] gi|194142063|gb|EDW58471.1| GJ14463 [Drosophila virilis]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/78 (96%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195570684|ref|XP_002103334.1| GD19013 [Drosophila simulans] gi|194199261|gb|EDX12837.1| GD19013 [Drosophila simulans]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSA+YALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 612 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAYYALTVFRKQFLYDEVEAEVNLCFDQ 671

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 672 FVYKLSEQIFAHYKQLAG 689

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21357451|ref|NP_650447.1| specifically Rac1-associated protein 1 [Drosophila melanogaster] gi|194900994|ref|XP_001980040.1| GG16915 [Drosophila erecta] gi|195328765|ref|XP_002031082.1| GM24222 [Drosophila sechellia] gi|195501340|ref|XP_002097756.1| GE24298 [Drosophila yakuba] gi|74868771|sp|Q9VF87.1|CYFIP_DROME RecName: Full=Cytoplasmic FMR1-interacting protein; AltName: Full=Specifically Rac1-associated protein 1; Short=DSra-1 gi|7300001|gb|AAF55173.1| specifically Rac1-associated protein 1 [Drosophila melanogaster] gi|13641367|gb|AAK31584.1| DRac1-associated protein DSRA-1 [Drosophila melanogaster] gi|14993353|gb|AAG61254.1| CYFIP [Drosophila melanogaster] gi|190651743|gb|EDV48998.1| GG16915 [Drosophila erecta] gi|194120025|gb|EDW42068.1| GM24222 [Drosophila sechellia] gi|194183857|gb|EDW97468.1| GE24298 [Drosophila yakuba]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSA+YALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAYYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 720 FVYKLSEQIFAHYKQLAG 737

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21483480|gb|AAM52715.1| LD47929p [Drosophila melanogaster]

 Score =  159 bits (402), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/78 (94%), Positives = 77/78 (98%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSA+YALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct: 696 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAYYALTVFRKQFLYDEVEAEVNLCFDQ 755

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKLSEQIFAHYKQLA 
Sbjct: 756 FVYKLSEQIFAHYKQLAG 773

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	84
UNIPROTKB|Q299G2	1291	Sra-1 "Cytoplasmic FMR1-intera	0.916	0.059	0.974	5.3e-36
FB|FBgn0038320	1291	Sra-1 "specifically Rac1-assoc	0.916	0.059	0.961	2.3e-35
UNIPROTKB|E7EVF4	1253	CYFIP2 "Cytoplasmic FMR1-inter	0.916	0.061	0.870	1.3e-32
UNIPROTKB|Q5R414	1253	CYFIP2 "Cytoplasmic FMR1-inter	0.916	0.061	0.870	1.3e-32
MGI|MGI:1924134	1253	Cyfip2 "cytoplasmic FMR1 inter	0.916	0.061	0.870	1.3e-32
UNIPROTKB|F1NE09	1256	CYFIP2 "Uncharacterized protei	0.916	0.061	0.870	1.3e-32
UNIPROTKB|E7EWA4	1278	CYFIP2 "Cytoplasmic FMR1-inter	0.916	0.060	0.870	1.4e-32
UNIPROTKB|Q96F07	1278	CYFIP2 "Cytoplasmic FMR1-inter	0.916	0.060	0.870	1.4e-32
UNIPROTKB|F1PMM7	1310	CYFIP2 "Uncharacterized protei	0.916	0.058	0.870	1.4e-32
ZFIN|ZDB-GENE-080724-2	1253	cyfip2 "cytoplasmic FMR1 inter	0.916	0.061	0.857	3.5e-32

UNIPROTKB|Q299G2 Sra-1 "Cytoplasmic FMR1-interacting protein" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 401 (146.2 bits), Expect = 5.3e-36, P = 5.3e-36
 Identities = 75/77 (97%), Positives = 77/77 (100%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct:   660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKLSEQIFAHYKQLA
Sbjct:   720 FVYKLSEQIFAHYKQLA 736

GO:0007411 "axon guidance" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0022416 "chaeta development" evidence=ISS

GO:0030031 "cell projection assembly" evidence=ISS

GO:0030866 "cortical actin cytoskeleton organization" evidence=ISS

GO:0031209 "SCAR complex" evidence=ISS

GO:0050807 "regulation of synapse organization" evidence=ISS

FB|FBgn0038320 Sra-1 "specifically Rac1-associated protein 1" [Drosophila melanogaster (taxid:7227)]

 Score = 395 (144.1 bits), Expect = 2.3e-35, P = 2.3e-35
 Identities = 74/77 (96%), Positives = 77/77 (100%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMME+VLYPLDLYNDSA+YALTVFRKQFLYDEVEAEVNLCFDQ
Sbjct:   660 MSMPWILTDHILQTKEPSMMEFVLYPLDLYNDSAYYALTVFRKQFLYDEVEAEVNLCFDQ 719

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKLSEQIFAHYKQLA
Sbjct:   720 FVYKLSEQIFAHYKQLA 736

GO:0017048 "Rho GTPase binding" evidence=NAS

GO:0007411 "axon guidance" evidence=IMP

GO:0050807 "regulation of synapse organization" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0045202 "synapse" evidence=ISS

GO:0031209 "SCAR complex" evidence=IDA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0045177 "apical part of cell" evidence=IDA

UNIPROTKB|E7EVF4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)]

 Score = 369 (135.0 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   641 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 700

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   701 FVYKLADQIFAYYKAMA 717

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5R414 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Pongo abelii (taxid:9601)]

 Score = 369 (135.0 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   641 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 700

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   701 FVYKLADQIFAYYKAMA 717

GO:0005737 "cytoplasm" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0016337 "cell-cell adhesion" evidence=ISS

GO:0043005 "neuron projection" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

MGI|MGI:1924134 Cyfip2 "cytoplasmic FMR1 interacting protein 2" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   641 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 700

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   701 FVYKLADQIFAYYKAMA 717

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISA

GO:0006915 "apoptotic process" evidence=ISO

GO:0007155 "cell adhesion" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0030054 "cell junction" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045202 "synapse" evidence=ISA

GO:0045862 "positive regulation of proteolysis" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0097202 "activation of cysteine-type endopeptidase activity" evidence=ISO

UNIPROTKB|F1NE09 CYFIP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 369 (135.0 bits), Expect = 1.3e-32, P = 1.3e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   644 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 703

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   704 FVYKLADQIFAYYKAMA 720

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E7EWA4 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)]

 Score = 369 (135.0 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   666 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 725

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   726 FVYKLADQIFAYYKAMA 742

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q96F07 CYFIP2 "Cytoplasmic FMR1-interacting protein 2" [Homo sapiens (taxid:9606)]

 Score = 369 (135.0 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   666 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 725

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   726 FVYKLADQIFAYYKAMA 742

GO:0030054 "cell junction" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0045862 "positive regulation of proteolysis" evidence=IDA

GO:0097202 "activation of cysteine-type endopeptidase activity" evidence=IDA

UNIPROTKB|F1PMM7 CYFIP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 369 (135.0 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 67/77 (87%), Positives = 75/77 (97%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDSA+YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   698 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAEVNLCFDQ 757

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   758 FVYKLADQIFAYYKAMA 774

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-080724-2 cyfip2 "cytoplasmic FMR1 interacting protein 2" [Danio rerio (taxid:7955)]

 Score = 365 (133.5 bits), Expect = 3.5e-32, P = 3.5e-32
 Identities = 66/77 (85%), Positives = 74/77 (96%)

Query:     1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
             MSMPWILTDHIL+TKEPSMMEYVLYPLDLYNDS +YALT F+KQFLYDE+EAEVNLCFDQ
Sbjct:   640 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSGYYALTKFKKQFLYDEIEAEVNLCFDQ 699

Query:    61 FVYKLSEQIFAHYKQLA 77
             FVYKL++QIFA+YK +A
Sbjct:   700 FVYKLADQIFAYYKAMA 716

GO:0005737 "cytoplasm" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0010842 "retina layer formation" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O44518	CYFIP_CAEEL	No assigned EC number	0.7564	0.9285	0.0618	yes	N/A
Q96F07	CYFP2_HUMAN	No assigned EC number	0.8589	0.9285	0.0610	yes	N/A
Q299G2	CYFIP_DROPS	No assigned EC number	0.9615	0.9285	0.0604	yes	N/A
Q5R414	CYFP2_PONAB	No assigned EC number	0.8589	0.9285	0.0622	yes	N/A
Q9VF87	CYFIP_DROME	No assigned EC number	0.9487	0.9285	0.0604	yes	N/A
Q5SQX6	CYFP2_MOUSE	No assigned EC number	0.8589	0.9285	0.0622	yes	N/A
Q6UK63	PIRA_DICDI	No assigned EC number	0.5714	0.9166	0.0576	yes	N/A
Q5S2C3	PIR_ARATH	No assigned EC number	0.5454	0.9166	0.0600	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	84
pfam05994	815	pfam05994, FragX_IP, Cytoplasmic Fragile-X interac	2e-41
PLN03099	1232	PLN03099, PIR, Protein PIR; Provisional	7e-32

>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family

 Score =  142 bits (361), Expect = 2e-41
 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 1/79 (1%)

Query: 1   MSMPWILTDHILKTKEP-SMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFD 59
            S+PWILTDHIL+T EP S+ E + YPL +YND+A YAL     QFLYDE+EAE NLCFD
Sbjct: 251 TSLPWILTDHILETYEPPSLTEAIFYPLSIYNDAAQYALKKLNSQFLYDEIEAEANLCFD 310

Query: 60  QFVYKLSEQIFAHYKQLAA 78
           Q VYKL++Q+F H K+ A 
Sbjct: 311 QIVYKLADQVFTHIKEFAT 329

CYFIP1/2 (Cytoplasmic fragile X mental retardation interacting protein) like proteins for a highly conserved protein family. The function of CYFIPs is unclear, but CYFIP interaction with fragile X mental retardation interacting protein (FMRP) involves the domain of FMRP which also mediating homo- and heteromerization. Length = 815

>gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional

 Score =  115 bits (290), Expect = 7e-32
 Identities = 45/77 (58%), Positives = 62/77 (80%)

Query: 2   SMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQF 61
           S+PW+L D+IL++++  ++E VL P D+YNDSA +AL V +++FLYDE+EAEV+LCFDQ 
Sbjct: 601 SLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQL 660

Query: 62  VYKLSEQIFAHYKQLAA 78
           V KLSE IF +YK  AA
Sbjct: 661 VSKLSESIFTYYKSRAA 677

Length = 1232

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	84
PF05994	820	FragX_IP: Cytoplasmic Fragile-X interacting family	100.0
KOG3534|consensus	1253		100.0
PLN03099	1232	PIR Protein PIR; Provisional	100.0
PF08146	153	BP28CT: BP28CT (NUC211) domain; InterPro: IPR01295	85.63

>PF05994 FragX_IP: Cytoplasmic Fragile-X interacting family; InterPro: IPR008081 Cytoplasmic fragile X mental retardation protein (FMRP) interacting protein belongs to a highly conserved but, as yet, functionally uncharacterised family

Probab=100.00  E-value=3.5e-45  Score=311.52  Aligned_cols=82  Identities=73%  Similarity=1.300  Sum_probs=78.0

Q ss_pred             CCcchHHHHHhhccCC-CchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7113           1 MSMPWILTDHILKTKE-PSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAAR   79 (84)
Q Consensus         1 ~SLPwILtdhiL~~~~-~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s   79 (84)
                      ||||||||||||++++ |+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|||
T Consensus       251 ~SLPwILtdhiL~s~~~~~l~E~ilyPLdlYNDAA~~AL~~lk~q~LyDEIEAEv~lcfdqlv~~lsd~if~~yK~~Aa~  330 (820)
T PF05994_consen  251 MSLPWILTDHILESKDKPSLMEYILYPLDLYNDAAHYALKKLKSQFLYDEIEAEVNLCFDQLVFKLSDQIFTHYKSLAAS  330 (820)
T ss_dssp             G-HHHHHHHHHHHHT--GGGTTTHHHHHTHHHHHHHHHHHTS-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHhcCCcchhHHHHhhhHHHhhHHHHHHHHHHHHhhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999998 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy7113          80 FTF   82 (84)
Q Consensus        80 ~~~   82 (84)
                      +++
T Consensus       331 ~~l  333 (820)
T PF05994_consen  331 MLL  333 (820)
T ss_dssp             HTS
T ss_pred             Hhc
Confidence            986

Absence of FMRP is responsible for pathologic manifestations in Fragile X Syndrome, the most frequent cause of inherited mental retardation []. FMRP is an RNA-binding protein that may have a role in local protein translation at neuronal dendrites and in dendritic spine maturation []. CYFIP1 and CYFIP2, which share a high level of sequence identity, have recently been identified as cytoplasmic FMRP interacting proteins []. CYFIP2 interacts with FMRP-related proteins FXR1P/2P, while CYFIP1 interacts exclusively with FMRP. The FMRP-CYFIP interaction involves the domain of FMRP that also mediates homo- and heteromerisation, suggesting competition between the various interaction partners. CYFIP1 also interacts with the small GTPase Rac1 implicated in development and maintenance of neuronal structures. CYFIP1/2 are both present in synaptosomal extracts []. PIR121 (121F-specific p53 inducible RNA) is another functionally uncharacterised member of this family. The PIR121 gene maps to human chromosome 5q34, a region frequently translocated in acute myeloid leukaemia but not known to be amplified or deleted in solid tumours. Interaction between PIR121 and FMRP has been demonstrated, and hence PIR121 has also been termed CYFIP2 (Cytoplasmic FMRP Interacting Protein 2) [, ]. Shyc (Selective HYbridizing Clone) is a cytoplasmic protein of unknown function, expressed in the developing and embryonic nervous system. The protein has also been designated CYFIP1 due to the high sequence identity (98.7%) to its human orthologue. The CYFIP orthologues in Caenorhabditis elegans and Drosophila melanogaster (Fruit fly) share about 51% and 67% sequence identity with the human proteins, respectively []. The high level of conservation manifest throughout the entire CYFIP sequence between various orthologues suggests a number of functionally/structurally important domains. ; PDB: 3P8C_A.

>KOG3534|consensus

Probab=100.00  E-value=1.5e-44  Score=310.32  Aligned_cols=82  Identities=89%  Similarity=1.369  Sum_probs=81.2

Q ss_pred             CCcchHHHHHhhccCCCchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7113           1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF   80 (84)
Q Consensus         1 ~SLPwILtdhiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s~   80 (84)
                      ||||||||||||++++|||||+++||||+|||+|++||++|+||||||||||||||||||||||||||||+|||++|+||
T Consensus       637 MSMPWILTDhIL~tkEpSmmE~vLY~LDLYNDsA~YaLt~F~KQFLYDEvEAEVNLCFDQFVYKLseqiFa~YK~lAgs~  716 (1253)
T KOG3534|consen  637 MSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTNFNKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAGSM  716 (1253)
T ss_pred             ccCchhhhhhHHhcCChhHHHHhhcchhcccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc
Q psy7113          81 TF   82 (84)
Q Consensus        81 ~~   82 (84)
                      ++
T Consensus       717 lL  718 (1253)
T KOG3534|consen  717 LL  718 (1253)
T ss_pred             hh
Confidence            86

>PLN03099 PIR Protein PIR; Provisional

Probab=100.00  E-value=1.8e-43  Score=309.57  Aligned_cols=82  Identities=55%  Similarity=0.942  Sum_probs=80.9

Q ss_pred             CCcchHHHHHhhccCCCchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7113           1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF   80 (84)
Q Consensus         1 ~SLPwILtdhiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s~   80 (84)
                      ||||||||||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|+|+
T Consensus       600 ~SLPwIL~dhiL~~~~~~L~E~IfyPLdiYNDAA~~AL~~lk~qfLYDEIEAEv~LCfDqlv~klsd~iF~~yK~~A~s~  679 (1232)
T PLN03099        600 CSLPWMLVDYILESQDAGLLESVLLPFDIYNDSAQHALRVLKQRFLYDEIEAEVDLCFDQLVSKLSESIFTYYKSRAASK  679 (1232)
T ss_pred             cCccHHHHHHHHcCCChhhhhhhhcchhhhhhHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc
Q psy7113          81 TF   82 (84)
Q Consensus        81 ~~   82 (84)
                      ++
T Consensus       680 ~L  681 (1232)
T PLN03099        680 LL  681 (1232)
T ss_pred             hh
Confidence            75

>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []

Probab=85.63  E-value=0.71  Score=32.63  Aligned_cols=25  Identities=44%  Similarity=0.554  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7113          47 YDEVEAEVNLCFDQFVYKLSEQIFA   71 (84)
Q Consensus        47 ydEIeAEvnLCfDq~v~klsd~if~   71 (84)
                      -++||..|+=||=++|+||+|..|.
T Consensus        34 v~~vE~~v~~~~~~lV~KLnE~~FR   58 (153)
T PF08146_consen   34 VDEVESSVISAFVSLVLKLNEATFR   58 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhH
Confidence            4689999999999999999999875

The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	84
3p8c_A	1253	Structure And Control Of The Actin Regulatory Wave		8e-35

>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex Length = 1253

Iteration: 1
 Score =  141 bits (356), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 72/78 (92%)
Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQ 701
Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVMAG 719

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	84
3p8c_A	1253	Cytoplasmic FMR1-interacting protein 1; actin poly	3e-39

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens} Length = 1253

 Score =  136 bits (342), Expect = 3e-39
 Identities = 66/78 (84%), Positives = 72/78 (92%)

Query: 1   MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQ 60
           MSMPWILTDHIL+TKE SMMEYVLY LDLYNDSAHYALT F KQFLYDE+EAEVNLCFDQ
Sbjct: 642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQ 701

Query: 61  FVYKLSEQIFAHYKQLAA 78
           FVYKL++QIFA+YK +A 
Sbjct: 702 FVYKLADQIFAYYKVMAG 719

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	84
3p8c_A	1253	Cytoplasmic FMR1-interacting protein 1; actin poly	100.0

>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}

Probab=100.00  E-value=1e-44  Score=317.40  Aligned_cols=82  Identities=80%  Similarity=1.281  Sum_probs=81.0

Q ss_pred             CCcchHHHHHhhccCCCchhhhhhhhhhccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7113           1 MSMPWILTDHILKTKEPSMMEYVLYPLDLYNDSAHYALTVFRKQFLYDEVEAEVNLCFDQFVYKLSEQIFAHYKQLAARF   80 (84)
Q Consensus         1 ~SLPwILtdhiL~~~~~~l~e~ilypLdlYnDaA~~AL~~lk~q~LydEIeAEvnLCfDq~v~klsd~if~~yK~~A~s~   80 (84)
                      ||||||||||||++++|+|+|+||||||||||||++||++|||||||||||||||||||||||||||+||+|||++|+||
T Consensus       642 ~SLPWILtdhiL~s~~~~l~E~ilyPLdlYNDAA~~AL~~lk~qfLYDEIEAEvnLCfDqlv~kLSd~iF~~yK~~Aas~  721 (1253)
T 3p8c_A          642 MSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSL  721 (1253)
T ss_dssp             GCHHHHHHHHHHHHTCGGGTTTHHHHHTHHHHHHHHHHHTSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHccCCchhHHHHhcchhHHhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hc
Q psy7113          81 TF   82 (84)
Q Consensus        81 ~~   82 (84)
                      ++
T Consensus       722 lL  723 (1253)
T 3p8c_A          722 LL  723 (1253)
T ss_dssp             TS
T ss_pred             hc
Confidence            85

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00