Psyllid ID: psy7128
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2056 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VT28 | 3479 | Protein furry OS=Drosophi | yes | N/A | 0.243 | 0.144 | 0.478 | 1e-130 | |
| O94915 | 3013 | Protein furry homolog-lik | yes | N/A | 0.082 | 0.056 | 0.707 | 2e-67 | |
| Q5TBA9 | 3013 | Protein furry homolog OS= | no | N/A | 0.082 | 0.056 | 0.695 | 7e-66 | |
| E9Q8I9 | 3020 | Protein furry homolog OS= | no | N/A | 0.232 | 0.158 | 0.339 | 1e-65 | |
| Q7Q107 | 267 | Mediator of RNA polymeras | no | N/A | 0.075 | 0.580 | 0.577 | 5e-44 | |
| Q8MSX2 | 249 | Mediator of RNA polymeras | no | N/A | 0.065 | 0.538 | 0.581 | 2e-37 | |
| Q921D4 | 246 | Mediator of RNA polymeras | no | N/A | 0.075 | 0.634 | 0.487 | 5e-34 | |
| Q3SZY9 | 246 | Mediator of RNA polymeras | no | N/A | 0.075 | 0.630 | 0.496 | 1e-33 | |
| Q6IQ63 | 254 | Mediator of RNA polymeras | no | N/A | 0.058 | 0.472 | 0.616 | 1e-33 | |
| Q5RD94 | 246 | Mediator of RNA polymeras | no | N/A | 0.068 | 0.573 | 0.517 | 3e-33 |
| >sp|Q9VT28|FRY_DROME Protein furry OS=Drosophila melanogaster GN=fry PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust.
Identities = 280/585 (47%), Positives = 367/585 (62%), Gaps = 84/585 (14%)
Query: 1499 CSYPTRGENVEQSSRLCTQELRNWIR----PSEQPPWPSCSEHADQNVIDVIDKACPDIL 1554
C+Y T + + + L +E++N +R P +PP +IDV+D+ P I+
Sbjct: 1042 CNYRTY---LRKLAALILKEVKNLMRALGIPETEPP-----------LIDVMDRCVPGII 1087
Query: 1555 DQCMSQLTCADKTAALSASCIDLQWIADRSASIWTAGIHEDSNRNG-SVLNLSPSCSAP- 1612
++C+ QL +KTA L+A+CIDLQWIA+RS+ +W AG+ +D++++ S LNLS S S P
Sbjct: 1088 EKCLPQLPQTEKTAILNANCIDLQWIAERSSGVWLAGLTDDNSKSSTSTLNLSQSSSTPN 1147
Query: 1613 -------------DPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIGKKTS 1659
DPW CLF L++ VL CPSAVAQAWPI ++RL+ L+
Sbjct: 1148 ASATAASSPQLPFDPWATCLFGLLERQNVLQQCPSAVAQAWPICFTRLNALY-------- 1199
Query: 1660 YCALTYYFLLSSLTDPTPVSDNRASLLRSSAPPRK--PVSERDSFLSLWRYLAIFSARVV 1717
S+ DPTPVSDNRASLLRSSAP +K S++DS+L LWR + R+V
Sbjct: 1200 -----------SVIDPTPVSDNRASLLRSSAPTKKVPTESQKDSYLRLWRNQVACAMRLV 1248
Query: 1718 PPVPYPTPRCASPDLSLSWSPENVGGERGGAGVENKPAPTASPPPSPTGLYKLLVPLLRC 1777
P +P RCASPDLSLS SP+++ +R +A SP LYKL+VPLLRC
Sbjct: 1249 PQIPSVAVRCASPDLSLSSSPDSLNADRSDK--------SAMGSASPQALYKLVVPLLRC 1300
Query: 1778 DTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMRRRRRRDALRLQLVRVF 1837
+ DVRDA V+ALG IN +ALKDLMEEL VYIREAVD K ENMRRRRRRDALRLQ+VRV
Sbjct: 1301 EVVDVRDAAVNALGLINHDALKDLMEELVVYIREAVDCKQENMRRRRRRDALRLQVVRVL 1360
Query: 1838 ELIAEHGTFGACSPTMP----GLLSPLAEYVDGARLCLELEADKQIL--REIKAHFCNFV 1891
E IAE+GTFG + + L Y+ GA L E DK L RE+KAHFCNF+
Sbjct: 1361 EKIAENGTFGVSTCVLERDTMSLHPTFVLYISGAMGYLTSETDKDNLSIREVKAHFCNFI 1420
Query: 1892 CKMIHSFPLESRQTLLKRDLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPE 1951
KMI +FPLE+ TLL R L+RNLF+LF +W G + + L T ++
Sbjct: 1421 RKMIKNFPLEACATLLSRVLKRNLFNLFAAWCGSFSKPLGYTMQSDHTL----------- 1469
Query: 1952 ALKTSEEELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQ 2011
EE+LQ ++L AMSA+L CG +F+PS L +D ++Y WLDMLL S EK YQ+
Sbjct: 1470 ----EEEKLQFSALQAMSALLCCGQIFNPS-YLQDDSIIYKWLDMLLTSKNEKIYQLARD 1524
Query: 2012 TVILLLECNPDMGPLLDWVVDRCYTASVQVADGCFLALATLFSAR 2056
TV+LLLE NPD+G LL+WV+DRCYT++ + AD CFLALA++FSA+
Sbjct: 1525 TVVLLLESNPDIGQLLEWVIDRCYTSTPREADACFLALASIFSAK 1569
|
Trc/fry signaling pathway plays a key role in maintaining the integrity of polarized cell extensions (arista) during morphogenesis, regulates the actin cytoskeleton and plays a key role in patterning sensory neuron dendritic fields by promoting avoidance between homologous dendrites as well as by limiting dendritic branching. Fry positively regulates trc kinase activity. Drosophila melanogaster (taxid: 7227) |
| >sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY PE=1 SV=1 | Back alignment and function description |
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| >sp|E9Q8I9|FRY_MOUSE Protein furry homolog OS=Mus musculus GN=Fry PE=1 SV=1 | Back alignment and function description |
|---|
| >sp|Q7Q107|MED6_ANOGA Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3 | Back alignment and function description |
|---|
| >sp|Q8MSX2|MED6_DROME Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q921D4|MED6_MOUSE Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q3SZY9|MED6_BOVIN Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6IQ63|MED6_DANRE Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q5RD94|MED6_PONAB Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2056 | ||||||
| 405976661 | 2628 | Protein furry-like protein [Crassostrea | 0.380 | 0.297 | 0.358 | 1e-153 | |
| 345484644 | 3254 | PREDICTED: protein furry-like [Nasonia v | 0.230 | 0.145 | 0.571 | 1e-147 | |
| 383853798 | 3127 | PREDICTED: protein furry-like [Megachile | 0.230 | 0.151 | 0.575 | 1e-145 | |
| 242022418 | 1401 | heat containing protein, putative [Pedic | 0.235 | 0.345 | 0.530 | 1e-145 | |
| 307202406 | 1438 | Protein furry-like protein-like [Harpegn | 0.233 | 0.334 | 0.534 | 1e-144 | |
| 380018403 | 3222 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.233 | 0.149 | 0.530 | 1e-143 | |
| 332021994 | 3196 | Protein furry-like protein-like protein | 0.233 | 0.150 | 0.529 | 1e-143 | |
| 307188546 | 1417 | Protein furry-like protein-like [Campono | 0.233 | 0.339 | 0.523 | 1e-142 | |
| 328785827 | 3137 | PREDICTED: protein furry-like [Apis mell | 0.230 | 0.151 | 0.571 | 1e-141 | |
| 322779004 | 1327 | hypothetical protein SINV_04959 [Solenop | 0.233 | 0.362 | 0.520 | 1e-141 |
| >gi|405976661|gb|EKC41160.1| Protein furry-like protein [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-153, Method: Compositional matrix adjust.
Identities = 351/978 (35%), Positives = 514/978 (52%), Gaps = 196/978 (20%)
Query: 1141 ESLYRLLWVYMIRIKCESNSATQSRLQSIVNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQ 1200
+SL+RLLWVYM+RIKCESNS T SRLQSIV+SLFPKGSK V P+D PLN FVKIIQFIA+
Sbjct: 368 DSLHRLLWVYMVRIKCESNSVTHSRLQSIVSSLFPKGSKVVTPKDVPLNYFVKIIQFIAK 427
Query: 1201 ERLDFAMREIVFDLLSVGRPIKLILT--PERMSIGLRAFLVVADSLQQKEGEPPMPRTSG 1258
ERLDFAM+EIVFDLL VGRP K+ L+ PERMSIGLRAFLV+ADSLQQK+G+PPMP+T
Sbjct: 428 ERLDFAMKEIVFDLLCVGRPAKIFLSHGPERMSIGLRAFLVIADSLQQKDGDPPMPQTQA 487
Query: 1259 VLPSGNTLRVKKTYLNKVSKTYLILLLFYRFDGGNCNNRDVNRGHSALYRDVCVLPSCET 1318
LPSG+T+R V +T+L +L + + + H + +L + ++
Sbjct: 488 TLPSGSTVR--------VKRTFLNKML------TDTTAKSIGISHYYPH----ILKAFDS 529
Query: 1319 RVCRYLESVGHPLRASSNDDIHSECKQVLGHA-------------------PLVLGPAPL 1359
+ VG L + +++ E + ++G P + P L
Sbjct: 530 MLRALDLQVGRQLLQTKTENVGKEPEVLMGGERKSKIELFRTCIAAIPRLIPDGMSPMEL 589
Query: 1360 VLSPAPLVLDHAHLVLGHASLVLDNAHL--------------VFGHAHLV-----LGHAS 1400
V L + + GHA L N L VF + L +S
Sbjct: 590 VEMLNRLTVHVDETLKGHAFQALQNLMLESPSWRENVIRGFVVFIQKEISDVTNQLLDSS 649
Query: 1401 LVLDNAHLVFGHAHSNSNLSN--------------LTRSQVFHQVEGFALVMLCNVRLTP 1446
L L LV N+N + +T V H+VEG ALVM+C+ R+
Sbjct: 650 LRLLMQLLVQWKTSMNTNTKDKNSGDGNVVLVKQEVTDLSVLHEVEGLALVMMCSARVVT 709
Query: 1447 RRLSVHILREVKMLNKVLGLGLEPPTSRSDVQCIDHCTTDVMQCKTHTSETQCSYPTRGE 1506
R+L+VH+L+EV+ + +T+ TQ +Y
Sbjct: 710 RKLAVHLLKEVRNI-------------------------------FNTANTQGNYE---- 734
Query: 1507 NVEQSSRLCTQELRNWIRPSEQPPWPSCSEHADQNVIDVIDKACPDILDQCMSQLTCADK 1566
P E D++ D+I + P L ++K
Sbjct: 735 -------------------------PCLLEMIDRSCGDIIKRLLP--------SLPHSEK 761
Query: 1567 TAALSASCIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKG 1626
+ +++S IDL WI DR+AS+W +N + + + PW C+ F+
Sbjct: 762 SLIMTSSNIDLTWIIDRAASVWNP-----TNVDPKMQERHWTAGRVSPWMRCVAMFVSSD 816
Query: 1627 RVLTYCPSAVAQAWPIVYSRLHTLFPTIGKKTSYCALTYYFLLSSLTDP-TPVSDNRASL 1685
+T CP AV AWPIV++RL ++ +L +P T +++NR SL
Sbjct: 817 FGMTVCPLAVGAAWPIVFTRLSNVY-------------------TLLEPSTMINENRTSL 857
Query: 1686 LRSSAPPRKPVSERDSFLSLWRYLAIFSARVVPPVPYPTPRCASPDLSLSWSPENVGGER 1745
LRS +KP +E+D + LW+ I + V P RCASPD SP++ GG++
Sbjct: 858 LRSGTSNKKPTTEKDLVMELWQNYVILACAVAQKGITPQLRCASPD--PGSSPDSAGGDK 915
Query: 1746 GGAGVENKPAPTASPPPSPTGLYKLLVPLLRCDTTDVRDAVVHALGNINSEALKDLMEEL 1805
+ ++N + +AS L+++LVPL++C+ D+RD +V+ LG N ++L++EL
Sbjct: 916 SDS-IKNSNSYSAS------ALFQMLVPLMKCENIDMRDTIVNGLGYTNPAVFRELIDEL 968
Query: 1806 SVYIREAVDRKTENMRRRRRRDALRLQLVRVFELIAEHGTF-----GACSPTMPGLLSPL 1860
Y++EA+DRK N +RRR++D LR+QL +FEL+A + TF G L
Sbjct: 969 LGYLKEAIDRKEGNFKRRRKKDVLRVQLAHIFELMAANKTFAQADSGVIEQDEHCLNKTF 1028
Query: 1861 AEYVDGARLCLELEADKQI--LREIKAHFCNFVCKMIHSFPLESRQTLLKRDLRRNLFSL 1918
EY+DGAR LE E+D+ + L++I+ HF FV ++I + P+E ++TLL RDLR +LF L
Sbjct: 1029 VEYIDGARQYLESESDRNLPDLQDIRLHFSRFVRELISNTPMEYKRTLLTRDLRYSLFHL 1088
Query: 1919 FTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEEELQLTSLSAMSAVLTCGPVF 1978
F +W+G++ + + VS K +L+L+++ AMSAVL CGPVF
Sbjct: 1089 FGNWSGKFSHTMGDSTDRRVS--------------KEEITDLELSAVRAMSAVLCCGPVF 1134
Query: 1979 DPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGPLLDWVVDRCYTAS 2038
DP+ L +DG +Y W MLL+S E++ Y++ +TV+LLL+ NPD LLDWV+DRCYT +
Sbjct: 1135 DPNG-LNDDGYIYKWAHMLLSSHEDRIYELAKETVVLLLDFNPDTSGLLDWVIDRCYTGA 1193
Query: 2039 VQVADGCFLALATLFSAR 2056
+VADGCF ALA +F ++
Sbjct: 1194 NEVADGCFNALAAVFQSK 1211
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|345484644|ref|XP_003425091.1| PREDICTED: protein furry-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|383853798|ref|XP_003702409.1| PREDICTED: protein furry-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|242022418|ref|XP_002431637.1| heat containing protein, putative [Pediculus humanus corporis] gi|212516945|gb|EEB18899.1| heat containing protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|307202406|gb|EFN81826.1| Protein furry-like protein-like [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|380018403|ref|XP_003693118.1| PREDICTED: LOW QUALITY PROTEIN: protein furry-like [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|332021994|gb|EGI62320.1| Protein furry-like protein-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|307188546|gb|EFN73282.1| Protein furry-like protein-like [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
| >gi|328785827|ref|XP_003250661.1| PREDICTED: protein furry-like [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|322779004|gb|EFZ09408.1| hypothetical protein SINV_04959 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2056 | ||||||
| FB|FBgn0016081 | 3479 | fry "furry" [Drosophila melano | 0.191 | 0.112 | 0.444 | 3.4e-224 | |
| UNIPROTKB|O94915 | 3013 | FRYL "Protein furry homolog-li | 0.088 | 0.060 | 0.664 | 3e-192 | |
| MGI|MGI:2443895 | 3020 | Fry "furry homolog (Drosophila | 0.084 | 0.057 | 0.685 | 4.6e-187 | |
| UNIPROTKB|Q5TBA9 | 3013 | FRY "Protein furry homolog" [H | 0.084 | 0.057 | 0.685 | 7.9e-186 | |
| WB|WBGene00004728 | 2886 | sax-2 [Caenorhabditis elegans | 0.083 | 0.059 | 0.483 | 1e-112 | |
| RGD|1310296 | 246 | Med6 "mediator complex subunit | 0.057 | 0.479 | 0.608 | 9.2e-34 | |
| UNIPROTKB|E1BZ92 | 246 | MED6 "Mediator of RNA polymera | 0.057 | 0.483 | 0.588 | 1.5e-33 | |
| UNIPROTKB|Q3SZY9 | 246 | MED6 "Mediator of RNA polymera | 0.057 | 0.479 | 0.6 | 1.9e-33 | |
| UNIPROTKB|E2R2L6 | 246 | MED6 "Mediator of RNA polymera | 0.057 | 0.479 | 0.608 | 2.4e-33 | |
| FB|FBgn0024330 | 249 | MED6 "Mediator complex subunit | 0.062 | 0.514 | 0.582 | 3.5e-33 |
| FB|FBgn0016081 fry "furry" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 3.4e-224, Sum P(6) = 3.4e-224
Identities = 206/463 (44%), Positives = 266/463 (57%)
Query: 1499 CSYPTRGENVEQSSRLCTQELRNWIR----PSEQPPWPSCSEHADQNVIDVIDKACPDIL 1554
C+Y T + + + L +E++N +R P +PP +IDV+D+ P I+
Sbjct: 1042 CNYRTY---LRKLAALILKEVKNLMRALGIPETEPP-----------LIDVMDRCVPGII 1087
Query: 1555 DQCMSQLTCADKTAALSASCIDLQWIADRSASIWTAGIHEDSNRNG-SVLNLSPSCSAP- 1612
++C+ QL +KTA L+A+CIDLQWIA+RS+ +W AG+ +D++++ S LNLS S S P
Sbjct: 1088 EKCLPQLPQTEKTAILNANCIDLQWIAERSSGVWLAGLTDDNSKSSTSTLNLSQSSSTPN 1147
Query: 1613 -------------DPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIGKKTS 1659
DPW CLF L++ VL CPSAVAQAWPI ++RL+ L+
Sbjct: 1148 ASATAASSPQLPFDPWATCLFGLLERQNVLQQCPSAVAQAWPICFTRLNALY-------- 1199
Query: 1660 YCALTYYFLLSSLTDPTPVSDNRASLLRSSAPPRK-PV-SERDSFLSLWRYLAIFSARXX 1717
S+ DPTPVSDNRASLLRSSAP +K P S++DS+L LWR + R
Sbjct: 1200 -----------SVIDPTPVSDNRASLLRSSAPTKKVPTESQKDSYLRLWRNQVACAMRLV 1248
Query: 1718 XXXXXXXXRCASPDLSLSWSPENVGGERGGAGVENKXXXXXXXXXXXXGLYKLLVPLLRC 1777
RCASPDLSLS SP+++ +R +K LYKL+VPLLRC
Sbjct: 1249 PQIPSVAVRCASPDLSLSSSPDSLNADRS-----DKSAMGSASPQA---LYKLVVPLLRC 1300
Query: 1778 DTTDVRDAVVHALGNINSEALKDLMEELSVYIREAVDRKTENMXXXXXXXXXXXXXXXVF 1837
+ DVRDA V+ALG IN +ALKDLMEEL VYIREAVD K ENM V
Sbjct: 1301 EVVDVRDAAVNALGLINHDALKDLMEELVVYIREAVDCKQENMRRRRRRDALRLQVVRVL 1360
Query: 1838 ELIAEHGTFGA--C---SPTMPGLLSPLAEYVDGARLCLELEADKQIL--REIKAHFCNF 1890
E IAE+GTFG C TM L Y+ GA L E DK L RE+KAHFCNF
Sbjct: 1361 EKIAENGTFGVSTCVLERDTM-SLHPTFVLYISGAMGYLTSETDKDNLSIREVKAHFCNF 1419
Query: 1891 VCKMIHSFPLESRQTLLKRDLRRNLFSLFTSWAGQYGRNLNIT 1933
+ KMI +FPLE+ TLL R L+RNLF+LF +W G + + L T
Sbjct: 1420 IRKMIKNFPLEACATLLSRVLKRNLFNLFAAWCGSFSKPLGYT 1462
|
|
| UNIPROTKB|O94915 FRYL "Protein furry homolog-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443895 Fry "furry homolog (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5TBA9 FRY "Protein furry homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00004728 sax-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| RGD|1310296 Med6 "mediator complex subunit 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BZ92 MED6 "Mediator of RNA polymerase II transcription subunit 6" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q3SZY9 MED6 "Mediator of RNA polymerase II transcription subunit 6" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2R2L6 MED6 "Mediator of RNA polymerase II transcription subunit 6" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| FB|FBgn0024330 MED6 "Mediator complex subunit 6" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2056 | |||
| pfam14222 | 538 | pfam14222, MOR2-PAG1_N, Cell morphogenesis N-termi | 3e-57 | |
| pfam14222 | 538 | pfam14222, MOR2-PAG1_N, Cell morphogenesis N-termi | 2e-45 | |
| pfam04934 | 134 | pfam04934, Med6, MED6 mediator sub complex compone | 7e-32 | |
| pfam14222 | 538 | pfam14222, MOR2-PAG1_N, Cell morphogenesis N-termi | 5e-17 | |
| COG5097 | 210 | COG5097, MED6, RNA polymerase II transcriptional r | 2e-15 | |
| PTZ00470 | 522 | PTZ00470, PTZ00470, glycoside hydrolase family 47 | 6e-06 | |
| pfam07655 | 95 | pfam07655, Secretin_N_2, Secretin N-terminal domai | 5e-05 | |
| pfam05316 | 350 | pfam05316, VAR1, Mitochondrial ribosomal protein ( | 6e-05 | |
| pfam07655 | 95 | pfam07655, Secretin_N_2, Secretin N-terminal domai | 1e-04 | |
| pfam05316 | 350 | pfam05316, VAR1, Mitochondrial ribosomal protein ( | 2e-04 | |
| pfam05316 | 350 | pfam05316, VAR1, Mitochondrial ribosomal protein ( | 3e-04 | |
| pfam07655 | 95 | pfam07655, Secretin_N_2, Secretin N-terminal domai | 5e-04 | |
| pfam07655 | 95 | pfam07655, Secretin_N_2, Secretin N-terminal domai | 8e-04 | |
| pfam07655 | 95 | pfam07655, Secretin_N_2, Secretin N-terminal domai | 8e-04 | |
| PTZ00470 | 522 | PTZ00470, PTZ00470, glycoside hydrolase family 47 | 0.001 | |
| pfam05316 | 350 | pfam05316, VAR1, Mitochondrial ribosomal protein ( | 0.001 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.001 | |
| PTZ00470 | 522 | PTZ00470, PTZ00470, glycoside hydrolase family 47 | 0.002 | |
| pfam07655 | 95 | pfam07655, Secretin_N_2, Secretin N-terminal domai | 0.002 | |
| PRK13914 | 481 | PRK13914, PRK13914, invasion associated secreted e | 0.003 |
| >gnl|CDD|222604 pfam14222, MOR2-PAG1_N, Cell morphogenesis N-terminal | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-57
Identities = 62/171 (36%), Positives = 100/171 (58%), Gaps = 5/171 (2%)
Query: 717 ERRDLAVEFVFCLILIEVLKQLPFHPGHDNLVTYIETVAFKHFKYREGIQNDPNATNIH- 775
ERR L ++ C +LIE++KQ P +++ +E + F K + Q +++ +
Sbjct: 2 ERRSLVSIYILCRVLIEIVKQSPLESLTEDMAEKLEEIVFGQLKTADPEQ--ISSSPLRL 59
Query: 776 TVADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKMV 835
+L+AE+LGVL++ RF SV RF++EL++LR KE + I L+ GM++ R+K
Sbjct: 60 ANWNLFAELLGVLSEIRFTSVSDRFIAELEKLR-KEDSPDAESKIELLIRGMRYLRLKTY 118
Query: 836 PIEEFEASFQFMQECAQYFTDV-KDKDVKHALAGLFVEILVPVAATVKNEV 885
P E FE S FMQ A+ F++ +KD+KHA + E+L+P+AA EV
Sbjct: 119 PEEAFEESADFMQSLAKLFSNAHGNKDLKHAYCEVLEELLLPLAAKATAEV 169
|
This family is the conserved N-terminal region of proteins that are involved in cell morphogenesis. Length = 538 |
| >gnl|CDD|222604 pfam14222, MOR2-PAG1_N, Cell morphogenesis N-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|218335 pfam04934, Med6, MED6 mediator sub complex component | Back alignment and domain information |
|---|
| >gnl|CDD|222604 pfam14222, MOR2-PAG1_N, Cell morphogenesis N-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|227428 COG5097, MED6, RNA polymerase II transcriptional regulation mediator [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1) | Back alignment and domain information |
|---|
| >gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1) | Back alignment and domain information |
|---|
| >gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1) | Back alignment and domain information |
|---|
| >gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|218552 pfam05316, VAR1, Mitochondrial ribosomal protein (VAR1) | Back alignment and domain information |
|---|
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2056 | |||
| KOG1825|consensus | 2206 | 100.0 | ||
| PF14222 | 552 | MOR2-PAG1_N: Cell morphogenesis N-terminal | 100.0 | |
| PF14228 | 1120 | MOR2-PAG1_mid: Cell morphogenesis central region | 100.0 | |
| KOG3169|consensus | 208 | 100.0 | ||
| PF04934 | 140 | Med6: MED6 mediator sub complex component; InterPr | 100.0 | |
| COG5097 | 210 | MED6 RNA polymerase II transcriptional regulation | 99.97 | |
| KOG1825|consensus | 2206 | 99.62 | ||
| PF14222 | 552 | MOR2-PAG1_N: Cell morphogenesis N-terminal | 99.08 |
| >KOG1825|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-132 Score=1280.29 Aligned_cols=1108 Identities=22% Similarity=0.248 Sum_probs=920.0
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhcCC-CCccchhhccCCCchHHHHHHHHhcccccccchhhHHHHHHHHHhhc
Q psy7128 532 NNVRPGEYVMRSLFADFTAQAEKKLDQVLAEP-QEKPLSKVLQRGEDPVFDQLLIAFGSVAEHCLPSILRALFAWYERQM 610 (2056)
Q Consensus 532 ~~~tPgEYALh~LFt~F~~~AErKI~~~l~~p-lE~pLskiL~~G~Dp~FDqLL~SLGsIAe~~pKpvIDsmM~WRKsKs 610 (2056)
.+..||||++|++|.+|...+|+|+..+.+.| .|+++.+++|+|+||+||++|.+|+++|+|||+|+|+++|+|||++.
T Consensus 35 ~~~~~~~~~~~~~fl~~~~~~Erkl~~v~~~~~~E~~~~~llqrg~Dp~fD~viqsL~~la~~~p~pvl~al~~Wrk~~~ 114 (2206)
T KOG1825|consen 35 LAEHPGEYSGKASFLNFETLAERKLPLVRRLPVTEQPQTELLQRGEDPAFDQVIQSLAMIARHKPVPVLEALLRWRKSEQ 114 (2206)
T ss_pred HHhcCchHHHHHHHHHHHHHHhhcccccccccccchhHHHHHhcCCChhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 34689999999999999999999998888877 79999999999999999999999999999999999999999999982
Q ss_pred CcchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhcccccCCCCCccccCCCcccCCCCCCccccccCcc
Q psy7128 611 RPSVEAAANPHISSNNNNNNNNNNNNNNNNNNNNNNNNNNNPVVIFLDKAYKGPSHVAKSGRKCFGTESGPSKILMLRPF 690 (2056)
Q Consensus 611 e~s~e~ksn~~~s~nnNNNNNNNNNNnNNNNNNNnNNnNnns~~~~l~~~~~~~~~rr~~~tk~~~te~~~s~~~~~~~~ 690 (2056)
. + . +.+. +++ ..++
T Consensus 115 ~-s-----~-~~ss------------------------~~~----------------------------~ast------- 128 (2206)
T KOG1825|consen 115 T-S-----Q-NSSS------------------------GAN----------------------------SAST------- 128 (2206)
T ss_pred h-c-----c-cccC------------------------CCC----------------------------CCcc-------
Confidence 1 0 0 0000 000 0000
Q ss_pred cccccchhhhhhHHHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHhhcCCCC-CCchhHHHHHHHhhhcccccccCccCCC
Q psy7128 691 RRVQEHTVLHEQYFRLRTKEAETILQERRDLAVEFVFCLILIEVLKQLPFH-PGHDNLVTYIETVAFKHFKYREGIQNDP 769 (2056)
Q Consensus 691 ~~~~~~~~~~~q~f~L~~~~e~~~laERRsLasiYIfCrVLIEVl~Q~p~~-~l~ddLv~kLEnIaFkQfK~~D~~~~sp 769 (2056)
....++|||++++||||||||+||++|.|.+ +..+++.....+.||.+++|.++....+
T Consensus 129 --------------------~~r~l~erk~l~~iyi~c~vl~Ei~pqip~~~~~~~~l~~~vld~cv~~~~y~~~~l~vs 188 (2206)
T KOG1825|consen 129 --------------------FPRKLAERKSLISIYILCRVLVEICPQIPSNEKLWSELENDVLDECVFHQLYVSQVLYVS 188 (2206)
T ss_pred --------------------ccchhhhcchhhHHHHHHhhhccccccCCcchhhhhhHHHHHHHHHHHHHhhcccccccc
Confidence 1126899999999999999999999999998 7777777777778888888888877667
Q ss_pred CCchhHHHHHHHHhhhccccccccchhHHHHHHHHHhhhccCCCCcchhhHHHHhcccceeEeeccchHHHHHHHHHHHH
Q psy7128 770 NATNIHTVADLYAEVLGVLAQSRFQSVRKRFMSELKELRFKEPNTHTTQSIISLLMGMKFFRVKMVPIEEFEASFQFMQE 849 (2056)
Q Consensus 770 n~aN~~iVadLyAELLGvLSq~RF~sVsdRFi~eL~el~~~~~s~~~~~~i~~LI~GMRyLrIK~yP~E~fEeSadFMqs 849 (2056)
++.|.+.+||+|||++|+||++.|++|+|||++|+++++.+ .++..++++.+||+|||||||++||+|+||+|++||++
T Consensus 189 ~~~~~~~~~~~~aelvGvlS~~~f~av~~~f~ae~~~l~~~-~s~~~~~s~vsLI~gMRyLrl~~y~~~~~e~S~~F~~~ 267 (2206)
T KOG1825|consen 189 LVDLRLLLWDSFAELVGVLSRIYFVAVSDRFIAETERIDGK-ISPVAESSTVSLINGMRYLKLGVYPLEDFEASASFMQS 267 (2206)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHhhhhheeccccccchHHHHHHHHH
Confidence 89999999999999999999999999999999999999877 67767789999999999999999999999999999999
Q ss_pred HHHhhhhccchhHHHHHHHHHHHHhhhhhcccccccccccccccccccccccccccccccccccccccCCCccchhhccc
Q psy7128 850 CAQYFTDVKDKDVKHALAGLFVEILVPVAATVKNEVKFIPIVSSSQGKRRRVRGSESITLGLIDPLRASSNDDIHSECKQ 929 (2056)
Q Consensus 850 LAkfF~~shg~~VK~Aycevl~eLLLPVAa~ataEvN~Ppw~k~ve~iy~~~~~~~~~~~g~~~~l~~~~~~~~~~~~~~ 929 (2056)
|++||.++|++ ||||||+++++||+||||.+|+|+|+|.|...||+||..+..
T Consensus 268 l~~l~~~v~~~-~k~~~a~~~~elL~pl~a~~~~e~n~p~~~~~~e~l~~tt~~-------------------------- 320 (2206)
T KOG1825|consen 268 LSSLFLKVKDK-VKHALAGLLVELLLPLAAAVTDEVNIPAPPSVMETLYTTTLE-------------------------- 320 (2206)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccCCCcChHHHHHHHHHhHHH--------------------------
Confidence 99999999999 999999999999999999999999999888888888876644
Q ss_pred cCCCCCCCCCCcccccccccCCCCccccccCCCCcccccccccccccccccCccccchhhhhhhhhhhhhhHHHHHHhhh
Q psy7128 930 GLGLEPPTSRSDVQCINHCTTEEPDEMITGERKPRIDLFRTCVAAVPRLIPDAMTGGELVDLLSRLTLHMDEELRALAYQ 1009 (2056)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~k~p~~~~~~e~kpridlfrtcvaavprl~~d~m~~~~l~~~lsr~~~h~d~elr~l~~~ 1009 (2056)
. --..|+++..+|+...++|.
T Consensus 321 -----------------l------------------------------------------~~k~k~~l~~~p~~~s~lc~ 341 (2206)
T KOG1825|consen 321 -----------------L------------------------------------------VSKKKYWLSQFPLKTSLLCV 341 (2206)
T ss_pred -----------------H------------------------------------------hhccccceeeccceeccccC
Confidence 0 01356778888999999999
Q ss_pred ccccccccCCCcchhhhhhhhcccccccchhhhhhhccccccccccccCccCCCccccCCCCCCCCCCchhhhHhhhhcC
Q psy7128 1010 SLQTLVIDFPDWRHDVLAVFYFGTHDMTIDLQWIADRSASIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKG 1089 (2056)
Q Consensus 1010 slq~~~~~~~~Wr~~v~~~~~~~~~~~~~dlqwl~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~w~~~l~~~~~~~ 1089 (2056)
|.|++| ..+| ...| ..|++++ |+
T Consensus 342 s~k~~f--~~~w-~~~L----------------------------------------------------~~~~~~~--kn 364 (2206)
T KOG1825|consen 342 SPKSFF--LSNW-YSFL----------------------------------------------------VACLSNV--KN 364 (2206)
T ss_pred CcHHHH--HHHH-HHHH----------------------------------------------------HHHHHhc--cC
Confidence 999999 6777 1111 2677766 44
Q ss_pred cccccCccccccccchhhcccccccccccccccccccccccccccchhhHHHHHHHHHhhheeeccCCCChhHHHhHHHH
Q psy7128 1090 RVLTYCPSAVAQAWPIVYSRLHTLFPTIVPFLTTHSFTLISANSFICFPLAESLYRLLWVYMIRIKCESNSATQSRLQSI 1169 (2056)
Q Consensus 1090 ~~~~~c~~~~~~~w~~~~~r~~~l~~~idp~~~~~~~~li~~~~~~r~~~l~~l~rLlW~Yl~R~~~es~s~t~~rL~~i 1169 (2056)
+ +++++++++++||++|||++| |.+++|.|++..+
T Consensus 365 -~-----------------------------------------~~~~r~al~~L~rl~wvy~~r---~~~~~~~r~~~~~ 399 (2206)
T KOG1825|consen 365 -D-----------------------------------------PWMRRVALRSLSRLVWVYFIR---EMNDATHRSMSLD 399 (2206)
T ss_pred -C-----------------------------------------HHHHHHHHHHhHHhheeeccc---cccchhhHHHHHH
Confidence 3 478999999999999999999 8899999999999
Q ss_pred HhhccCCCCcccccCCCchhhhhhhhhhhccchhhhHHHHHHHHhhccCCCccc-ccCchhhHHHHHHHHHHHhhhhccC
Q psy7128 1170 VNSLFPKGSKAVVPRDTPLNIFVKIIQFIAQERLDFAMREIVFDLLSVGRPIKL-ILTPERMSIGLRAFLVVADSLQQKE 1248 (2056)
Q Consensus 1170 ~~~lfp~g~k~~~~~d~~l~~~v~ii~~i~~~~~df~~~~ii~~Ll~~~~~~k~-~l~pErm~igirAfl~i~~~l~~~~ 1248 (2056)
+-.+||+|.+.++++|.|.++|+++|++|++.++||+|++++|+.|.++.+++- .+++++|+||+|++++++++++|+.
T Consensus 400 ~~~~l~~g~~~~~~~s~p~nlf~~~l~~is~~~l~f~l~e~~l~~Lv~~~~l~~~~~~~~~enlg~~~~~~~~~~v~q~~ 479 (2206)
T KOG1825|consen 400 CLHRLLRGYLSVYKSSQPPNLFWLYLDLISQSQLLFVLREGMLTQLVQQDPLVRFSVNIAEENLGLAMNMMLLELVKQDL 479 (2206)
T ss_pred HHHHhcccccccccccCccHHHHHHHHHHhhHHHHHHHHHHhhHHHHhhCccccccccHHHHhhHHHHHHHHHHhHhhhc
Confidence 999999999999999999999999999999999999999999999999998887 6999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccccc-cchhHHHHHHHHHhhcccCCccccccccccccchhhhhccccchhhHHhhhhh-h
Q psy7128 1249 GEPPMPRTSGVLPSGNTLRVKKTY-LNKVSKTYLILLLFYRFDGGNCNNRDVNRGHSALYRDVCVLPSCETRVCRYLE-S 1326 (2056)
Q Consensus 1249 ~~Pp~P~~~~~~ps~~~~~v~~~~-l~~~~~~~~~~l~~~~~~g~~c~~~~~~~g~~~yy~~~~~~l~~~~~i~~~ld-~ 1326 (2056)
++|+||.+....++++..++++.+ .+...|+ +.|+.+|+.+||++++++ ++.|++.|| +
T Consensus 480 ~~~~~~~s~~~~~~~~~~~~~~~~~~s~~~T~----------------e~ak~~gi~~~lp~~~~a---~e~ilr~~~r~ 540 (2206)
T KOG1825|consen 480 PSEAKIKSLRALLALNMSPFSQLQGPSCDLTE----------------EIAKGHGIGQLLPKVKAA---IESILRSCHRT 540 (2206)
T ss_pred CCccccccccccccccceeccccccccCCchH----------------HHhhccCHHHHHHHHHHH---HHHHHHHHHHh
Confidence 999999999999999998887666 8888887 789999999999999998 999999999 9
Q ss_pred cCCCccccccccchhhHhHhh-------------------cCCCCCCCCCCee--ecCcccccChhHHHHHHHHh---hc
Q psy7128 1327 VGHPLRASSNDDIHSECKQVL-------------------GHAPLVLGPAPLV--LSPAPLVLDHAHLVLGHASL---VL 1382 (2056)
Q Consensus 1327 ~g~~l~~~~~~~~~~~~~~~~-------------------~~lP~~~~~~~li--L~~~t~hvd~~lr~~A~qsL---vv 1382 (2056)
+|++++.++.+. .|+++.++ ..+|+.|+.+++| ||+.++|+|+++|.+|+|+| ++
T Consensus 541 ~~~~l~~ss~~s-~k~~~~~i~~~~k~~~~lfk~~~~~ip~li~~~~~~~~ii~il~r~sihld~~lr~~sq~vL~~ll~ 619 (2206)
T KOG1825|consen 541 YSQALLSSSRTS-AKLDALGIVNKLKSQLSLFKSELKCIPYLIEEVGRSDKIIEILPRNSIHLDEGLRKMSQQVLNRLLR 619 (2206)
T ss_pred hhhhhccccccc-ccCchhhhccccccchhhHHHHHHhhhhhcccCcchhhHHHHHhhhheeecHHhhhccHHHHHHHHh
Confidence 999999888877 55554333 3388999999998 99999999999999999999 55
Q ss_pred cch----HHHHHhhhcc----cCcchhhchhHHHHHHhhcc----------c---C---C-----------------CCC
Q psy7128 1383 DNA----HLVFGHAHLV----LGHASLVLDNAHLVFGHAHS----------N---S---N-----------------LSN 1421 (2056)
Q Consensus 1383 ~~~----~V~~gfa~FI----~D~y~~l~D~~Lrl~lq~~~----------~---~---~-----------------~~~ 1421 (2056)
++| +|++||++|| +|.++++++.++++|+|..+ . + + ...
T Consensus 620 ~~~~~re~V~~s~~~fi~~~i~d~~~~l~~~sl~l~l~sL~~wk~~l~~~~ks~~~ses~~~~k~~~~~~~is~~~~~~~ 699 (2206)
T KOG1825|consen 620 KLPHRREYVLRSMANFILIEIPDEFALLIYLSLKLLLESLRFWKLCLTASRKSTDASESNKTAKKETAFTKLSFTQIADQ 699 (2206)
T ss_pred hcCchHHHHHhhhhHHHHhhcchhhhHHHHhhHHHHHHHHHHHHHHHhhhhccccchhhhhhhcchhhhcceeeeecccc
Confidence 666 8999999998 89999999999999977311 1 0 0 012
Q ss_pred CccchhhHhccceeEEeecCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccccccccccccccccCCcccccC
Q psy7128 1422 LTRSQVFHQVEGFALVMLCNVRLTPRRLSVHILREVKMLNKVLGLGLEPPTSRSDVQCIDHCTTDVMQCKTHTSETQCSY 1501 (2056)
Q Consensus 1422 l~~ssvl~~vEg~gLvfLCS~s~~vRr~AV~vLR~Vr~l~~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 1501 (2056)
+...++++.+|++|+++||+.+..+|++||.+|++|+.++..+|...
T Consensus 700 ~~t~s~~~~i~~~av~~L~~v~s~~r~~~v~~l~~ir~l~i~i~~~~--------------------------------- 746 (2206)
T KOG1825|consen 700 LATESPASGIDKFAVILLSSVDSLTRATAVLLLRKVRALRIDIRDLM--------------------------------- 746 (2206)
T ss_pred ccccchhhcccceeEEEeeccccchhHHHHHHHHHHHHHHHhhhhhh---------------------------------
Confidence 45667889999999999999999999999999999999999998654
Q ss_pred CCCCCcccchhhhhhhhhcccCCCCCCCCCCCCCccCCcchhhhhhccChhhhhccccccchhhhhhhcccccccchhhh
Q psy7128 1502 PTRGENVEQSSRLCTQELRNWIRPSEQPPWPSCSEHADQNVIDVIDKACPDILDQCMSQLTCADKTAALSASCIDLQWIA 1581 (2056)
Q Consensus 1502 ~~~~e~~~~s~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~vIDVle~~~~~Il~~~~~~l~~aer~~~l~~~~~DlqW~~ 1581 (2056)
.++-+.||+++++.+.++....|+...+ . +||..
T Consensus 747 -----------------------------------~d~~p~~d~~~~a~~~~~~~~~e~~~ad-~----------~~~~i 780 (2206)
T KOG1825|consen 747 -----------------------------------IDEHPDHDMKFEAEPSYHIDVLEHHGAD-I----------LQSLI 780 (2206)
T ss_pred -----------------------------------hhcchhHHHHHhhhhhhhHHHHHHhccc-c----------eeecc
Confidence 1233566666666666666655553221 1 34444
Q ss_pred cccc-cccccccccCCCCCCcceeccCCCCCCCchhhhhHHhhhhhcccccChHHHHHHHHHHHHHHhhhcccccccccc
Q psy7128 1582 DRSA-SIWTAGIHEDSNRNGSVLNLSPSCSAPDPWGFCLFQFLQKGRVLTYCPSAVAQAWPIVYSRLHTLFPTIGKKTSY 1660 (2056)
Q Consensus 1582 ~rs~-~~~~~g~~~~~~~~~~l~~L~~S~~~~D~W~~cL~~~l~~~~~~~~CP~AV~~ar~iV~~RL~~l~~~i~~~a~~ 1660 (2056)
+-+. +....-...+-.-...+-....+...+|+|++||+.+.++...++.||.+.+++|++...|...+.+..
T Consensus 781 ~~s~r~~~~~~~~~~i~sd~~~~~~~f~~~~k~kwg~~L~~~~~~~~l~~~c~~~~s~s~~ll~~~~~a~~~~~------ 854 (2206)
T KOG1825|consen 781 DDSARPSLLRLDSDTIPSDSTLWSIIFSRLDKNKWGLLLSELVKYAGLLKPCSVQESKSEILLRRAHSAPSEFG------ 854 (2206)
T ss_pred cCCccchhhcCCCCCCCCcceehhhhhhhhccchhhhhhHHHHHHhcCCCCcchhhhhhhHHHHHHhccchhcc------
Confidence 4331 000000000110111111112233347899999999999888899999999999999999999988888
Q ss_pred cchhhhhcccCCCCC-CCCCCcccccccCCCCCCC-----CCCCchhHHHHHHHHHHhhccccCCCCCC--CCCCCCCCC
Q psy7128 1661 CALTYYFLLSSLTDP-TPVSDNRASLLRSSAPPRK-----PVSERDSFLSLWRYLAIFSARVVPPVPYP--TPRCASPDL 1732 (2056)
Q Consensus 1661 ~~~~~~~~l~~~~dp-~p~~~~rasllrss~~~~~-----p~~~~d~~l~qWk~Yli~aC~~~p~~~~~--~~r~asP~~ 1732 (2056)
|| +|.++.++.++|-...+.. +..-.+..+-+|+.|++++|+.++.+... +.|..+|+.
T Consensus 855 -------------~~s~~q~d~~s~~~~~~~~~~~v~fk~~~~~~~~~v~~w~~yl~~~~~~~~~~~~s~~h~rs~~pt~ 921 (2206)
T KOG1825|consen 855 -------------GKSNPQNDLDSKLLRWLLYAMFVCFKPPDGLDEGSVASWRDYLHLIFGVLRFGSESGNHLRSNAPTI 921 (2206)
T ss_pred -------------CCCccccccchHHHhhhccccceecccccccchhhhhhhhhhHHHhhhccccccccccchhhcCccc
Confidence 45 4677787776664432222 23457999999999999999998876543 889888888
Q ss_pred CCCCCCCCCCcccCCCCcCCCCCCCCCCCCChHHHHHHHhccc-----ccCChhhHHHHHHHhcCCCHHHHHHHHHHHHH
Q psy7128 1733 SLSWSPENVGGERGGAGVENKPAPTASPPPSPTGLYKLLVPLL-----RCDTTDVRDAVVHALGNINSEALKDLMEELSV 1807 (2056)
Q Consensus 1733 ~~~s~p~s~~~~R~~~~~~~~~~~~~~~i~Sar~LFklvvPlL-----r~e~~~IRdAvV~ALGsIN~~ayr~LLEEL~~ 1807 (2056)
+..+ |++... ... .+.....++++-++++++.. .-...+|++..|++.|.+|.-+|+.+.++|..
T Consensus 922 ~~~s-~~~~fS--~~~-------~~~s~~tpi~s~~k~~i~~~~~~~~~~~~~~i~~~~v~~~~~~~~~vf~~~~~~l~~ 991 (2206)
T KOG1825|consen 922 SHTS-CEGMFS--EVA-------ISFSDETPIKSKIKKVIRRENVRVHVENIYRITEENVWPFMLARKPVFALLVLRLIE 991 (2206)
T ss_pred ccCC-ccceeh--hhh-------hhccccCccchHHHHHHhhhhHHHHHHhccccchhheeccccccccchhhhhhhhhh
Confidence 7654 554432 110 11223445566666666554 44588999999999999999999999999999
Q ss_pred --HHHHHHhhhcc-chhhhcchhhHHHHHHHHHHHhhccCccCCCCCCC---cchhHHHHHHHHHHHHHhcchhhhH--H
Q psy7128 1808 --YIREAVDRKTE-NMRRRRRRDALRLQLVRVFELIAEHGTFGACSPTM---PGLLSPLAEYVDGARLCLELEADKQ--I 1879 (2056)
Q Consensus 1808 --~v~EA~dRk~s-n~RRrrRrD~LRleI~hV~eltAe~gvf~~~~~~~---~~l~~~lveyIkd~R~fL~~E~d~D--~ 1879 (2056)
..+++..|+++ +-+++.|+|++|.++-++.+.++..|.|.+..... ..+...+++|..-.++-|+++.+++ .
T Consensus 992 r~~~r~sl~R~e~~~~~~~~r~dLl~~~i~~~~e~l~~~Se~l~~~ale~d~vql~~~~~~~~~~~~~lLes~~~r~ie~ 1071 (2206)
T KOG1825|consen 992 RSTRRNSLARSESFHIMAPLRYDLLSVLIFLDPEFLISKSEFLDDTALERDFVQLLALYVDLRSYFGQLLESDYRREIEH 1071 (2206)
T ss_pred cccchhhhhcchhhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 78899999987 78999999999999999999999887787765433 4578899999999999999988888 7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccccccCCH-HHHHHHHHHHHhhhcCCCCCccccccccccCCCCCCCCCChhhhhhhHH
Q psy7128 1880 LREIKAHFCNFVCKMIHSFPLESRQTLLKR-DLRRNLFSLFTSWAGQYGRNLNITQSYSVSMPNPPASNPGPEALKTSEE 1958 (2056)
Q Consensus 1880 lq~LR~hFc~lve~Li~~~~~~~~~~~f~~-elRksLF~Lf~~WcG~~g~~~~~~~rre~~mr~~~~s~r~~aa~e~e~~ 1958 (2056)
+...|.||.+....+|.+.+.....+.+++ ++|.++|.++..||+..++..+...+. .+..-+..
T Consensus 1072 ~t~~~~~fSk~a~~~i~~~~~~~~~~~~~~te~r~~l~~l~~~wc~~~a~~~~~~~~~--------------~~~~~~v~ 1137 (2206)
T KOG1825|consen 1072 PTTEQLNFSKRASCFISLDEWLGEGIEAPITELRNALAILLIGWCSELARDDNALKMS--------------RRVISQVL 1137 (2206)
T ss_pred hhhhccchHhhhHHHhccchhhcCCeechhhHHHHHHhhhhccccccccccccHHHHH--------------HHHHHHHH
Confidence 888999999999999999988888888888 999999999999998854333222111 12223666
Q ss_pred HHHHHHHHHHHHHhccCCCcCCCcccCCCcchHHHHHHHhcCCchhHHHHHHHHHHHHHHhCCCCchhHHHHHHhhcCCC
Q psy7128 1959 ELQLTSLSAMSAVLTCGPVFDPSTLLAEDGVLYPWLDMLLASSEEKTYQIGCQTVILLLECNPDMGPLLDWVVDRCYTAS 2038 (2056)
Q Consensus 1959 ~Lq~aAL~AMAAvLC~GPifd~~~~~~edG~ll~WID~If~S~s~r~~~igr~AL~nLL~~N~d~~~LLe~~IdrCYt~~ 2038 (2056)
+.+...+.+|.++|||||++++.+.+.++|++|+|++++|.+++..++++|++||+|||+.|+|...||+|||+|||+.+
T Consensus 1138 e~l~~~~~~~~~vl~c~d~~~p~~~l~~~e~l~~w~~~l~~s~~~tiv~L~~~~l~~LL~lN~en~~Lf~~~i~qCys~~ 1217 (2206)
T KOG1825|consen 1138 EYLIEPAPRVPFVLSCADPRTPSVSLFDGEGLLGWTEALFHSGNHTIVALAKLALKNLLLLNLENLVLFPAVIDQCYSSS 1217 (2206)
T ss_pred HHHHhhhcccccccccCccccCceecccchHHHHHHHHHhCCCCchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHhcCc
Confidence 77777888888899999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHhhcC
Q psy7128 2039 VQVADGCFLALATLFSAR 2056 (2056)
Q Consensus 2039 ~~vA~GcF~aLa~Vfs~r 2056 (2056)
..+|+|||.+|++||++|
T Consensus 1218 ~tiA~~yf~~L~~v~~~~ 1235 (2206)
T KOG1825|consen 1218 ATIASGYFSVLAEVYMRQ 1235 (2206)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 999999999999999976
|
|
| >PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal | Back alignment and domain information |
|---|
| >PF14228 MOR2-PAG1_mid: Cell morphogenesis central region | Back alignment and domain information |
|---|
| >KOG3169|consensus | Back alignment and domain information |
|---|
| >PF04934 Med6: MED6 mediator sub complex component; InterPro: IPR007018 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
| >COG5097 MED6 RNA polymerase II transcriptional regulation mediator [Transcription] | Back alignment and domain information |
|---|
| >KOG1825|consensus | Back alignment and domain information |
|---|
| >PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2056 | ||||
| 4gwp_G | 295 | Structure Of The Mediator Head Module From S. Cerev | 6e-10 | ||
| 3rj1_G | 295 | Architecture Of The Mediator Head Module Length = 2 | 2e-09 | ||
| 4h63_F | 183 | Structure Of The Schizosaccharomyces Pombe Mediator | 1e-08 | ||
| 4h61_A | 175 | Structure Of The Schizosaccharomyces Pombe Mediator | 1e-08 |
| >pdb|4GWP|G Chain G, Structure Of The Mediator Head Module From S. Cerevisiae Length = 295 | Back alignment and structure |
|
| >pdb|3RJ1|G Chain G, Architecture Of The Mediator Head Module Length = 295 | Back alignment and structure |
| >pdb|4H63|F Chain F, Structure Of The Schizosaccharomyces Pombe Mediator Head Module Length = 183 | Back alignment and structure |
| >pdb|4H61|A Chain A, Structure Of The Schizosaccharomyces Pombe Mediator Subunit Med6 Length = 175 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rj1_G Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae} Length = 295 | Back alignment and structure |
|---|
Score = 121 bits (303), Expect = 5e-30
Identities = 40/173 (23%), Positives = 63/173 (36%), Gaps = 14/173 (8%)
Query: 238 VLHVQEPILYVIRKQHRHSME--------QTTPIADYYIIAGVVYQAPDLASVISSRLLS 289
+ V+EP +VIRKQ R + + P+ DYYII +YQ+P + ++ SRL+S
Sbjct: 117 LSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQDYYIIGANIYQSPTIFKIVQSRLMS 176
Query: 290 TVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEPSSIFQRQRVDMLL 349
T +HL S E + L ++ P++G + T + V
Sbjct: 177 TSYHLNSTLESLYDLIEFQPSQGVHYKVPTDTSTTATAATN--GNNAGGGSNKSSVRPTG 234
Query: 350 SELTRHFPVPPVPQAPQQNTQGNSVPM----RRIENGYFLNVTTVFDNLLQPS 398
P + R NG T + D L+ S
Sbjct: 235 GANMATVPSTTNVNMTVNTMGTGGQTIDNGTGRTGNGNMGITTEMLDKLMVTS 287
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2056 | |||
| 4gwp_G | 295 | Mediator of RNA polymerase II transcription subun; | 100.0 | |
| 4h61_A | 175 | Mediator of RNA polymerase II transcription subun; | 100.0 |
| >4gwp_G Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae S288C} PDB: 3rj1_G 4gwq_G | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=408.30 Aligned_cols=202 Identities=23% Similarity=0.239 Sum_probs=120.5
Q ss_pred CCceEeeccccccCCCccccccccCCCCCCCccccccccCccccccchhhHHHhHHhhcccc------------------
Q psy7128 149 DSSVTVLPWAGGQRGGRAATCGTAADSGNNVRPGEYVMRSLFADFTAQAEKKLDQVLAEPQV------------------ 210 (2056)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aleYFa~SPFYDrtSNNe~~~NqvL~~qQ~------------------ 210 (2056)
|..-|+-|.+++++| + ++ || +||||++||||||+||||++++|.+.++..
T Consensus 7 dEiqWr~P~wiq~~g-L--------~s-~N--VLdYFa~SPFyDktSNNevlrmQ~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (295)
T 4gwp_G 7 DELQWKSPEWIQVFG-L--------RT-EN--VLDYFAESPFFDKTSNNQVIKMQRQFSQLNDPNAAVNMTQNIMTLPDG 74 (295)
T ss_dssp SCCBCCSTTTTTCCS-S--------TH-HH--HHHHHHHSCCCSHHHHHHHHHHHCCSCCCCCSCC--------------
T ss_pred cceeecCHHHHHhcC-C--------Cc-ch--HHHHhhcCCccccccchHHHHHHHHhccccccccchhccccccccccc
Confidence 568899999999986 6 55 33 779999999999999977777776543211
Q ss_pred -----------------cccccccccccccchhhccccceeEEEEEEecCCceEEEEEeeecCCC--------ccceeee
Q psy7128 211 -----------------QIISKYVFHTRTMSFAIFHTMLYLCLWVLHVQEPILYVIRKQHRHSME--------QTTPIAD 265 (2056)
Q Consensus 211 -----------------q~~~~~~~~~~~e~~~~L~~M~GiEy~l~h~qEP~LfVIrKQ~R~sp~--------~v~pLa~ 265 (2056)
++..++..+..++ ++|++|+||||+|+|++||+|||||||+|++|+ +++||++
T Consensus 75 ~~~~~~~~~~~~~~~r~~i~~~~~~~~~~e--~~L~~m~GiEyvl~~~~eP~lwVIrKQ~R~s~~~~~~~~~~ev~pLa~ 152 (295)
T 4gwp_G 75 KNGNLEEEFAYVDPARRQILFKYPMYMQLE--EELMKLDGTEYVLSSVREPDFWVIRKQRRTNNSGVGSAKGPEIIPLQD 152 (295)
T ss_dssp --------CCCCCCHHHHHHCCCSTHHHHH--HHHHHHSCEEETTEEECSSEEEEEEETTEEEEEEEEECCCTTCCCEEE
T ss_pred cccchhhccccccchhhhhhhhcchhhhhH--HHHhhCCCeEEEEeecCCCceEEEEeeeccCCcccccccCcceeEeEE
Confidence 1122233333333 369999999999999999999999999999874 8999999
Q ss_pred EEEecCeEecCCChhHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCccccCCCCCCCCccchhhhhccCCCchHHHHHH
Q psy7128 266 YYIIAGVVYQAPDLASVISSRLLSTVHHLQSAFEEVNSLSKYNPNKGYSWDSKMLPQGKDTVKKEIIKEEPSSIFQRQRV 345 (2056)
Q Consensus 266 YYII~GnIYQAP~l~sVlsSRLlsa~~~L~~af~~~~s~~~f~Ps~Gy~w~~k~~~~~~~~~kk~~~~e~~~~~fQ~~Rv 345 (2056)
||||||+|||||++++||+|||++++++|+++|+.++++++|+|++||+|.++..+..+ ..+......+.+.+|+.++
T Consensus 153 YYIig~~IYqAPsl~~Vl~sRlls~~~~L~~a~~~~~~~~~f~Ps~G~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~ 230 (295)
T 4gwp_G 153 YYIIGANIYQSPTIFKIVQSRLMSTSYHLNSTLESLYDLIEFQPSQGVHYKVPTDTSTT--ATAATNGNNAGGGSNKSSV 230 (295)
T ss_dssp EEEEEETTEEECCCTTHHHHHHHHHHHHHHHHHHHHTCCC----------------------------------------
T ss_pred EEEECCEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHccCcccCCCCccccCCCCCccc--cccccCCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999876543322 2222334567889999999
Q ss_pred HHHHHHHHhhCCCCCCCCCCC
Q psy7128 346 DMLLSELTRHFPVPPVPQAPQ 366 (2056)
Q Consensus 346 D~LL~~L~~kfP~~~~~~~~~ 366 (2056)
+.....+.+++|.+.++....
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~ 251 (295)
T 4gwp_G 231 RPTGGANMATVPSTTNVNMTV 251 (295)
T ss_dssp ---------------------
T ss_pred CCccccccccCCCCCCccccc
Confidence 999999999999876654433
|
| >4h61_A Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 2.70A {Schizosaccharomyces pombe} PDB: 4h63_F | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00