Psyllid ID: psy7151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKII
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccEEccccccccccccEEEEEcccccHHHHccccEEEEccccccccccccEEEEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHccccccccEEEEEEEccccHHHHHHHHHcccEEEEEcHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHcccccHHHEccccccccccccccHHccccccEEEEEccccccccccccccEEEEEHHHHccHHHcEEEEEccccEEccHcHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHccccEEEEEEcccHccccHHHHHHHHHHcEEEEcHHHHHHHHc
Coil and Loop (DISEMBL)
meelkldpnqtllcqgtlrpdliESASHLASNKADvikthhndsPLIRALREqgkvieplkdfhkdelrlyglqfhpevdltnegRTMLKNFLFDVcgltgnftLKSREEELIKYVKETVGNMKVLVRKLgldlgltpevvmrhpfpgpglAIRVICGeeryiekdysETQVLVKIIVEYDQMFKKII
Flexible Loop (DISEMBL)
meelkldpnqtllCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPevvmrhpfpgpgLAIRVICGEERYiekdysetqvLVKIIVEYDQMFKKII
Low Complexity Region (SEG)
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKII
Disordered region (IsUnstruct)
************LCQGTL******************I*******PLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFK***
Disordered Region (DISOPRED)
*E*LKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKII
Disordered Region (DISEMBL)
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKII
Disordered Region (DISPRO)
****KLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKII
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKKII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q3THK7	693	GMP synthase [glutamine-h	yes	N/A	0.414	0.112	0.658	6e-23
Q5RA96	693	GMP synthase [glutamine-h	yes	N/A	0.329	0.089	0.714	7e-23
Q4V7C6	693	GMP synthase [glutamine-h	yes	N/A	0.414	0.112	0.658	7e-23
P49915	693	GMP synthase [glutamine-h	yes	N/A	0.329	0.089	0.714	8e-23
Q09580	745	Probable GMP synthase [gl	yes	N/A	0.377	0.095	0.652	2e-20
P32073	718	GMP synthase [glutamine-h	yes	N/A	0.361	0.094	0.611	1e-19
C3KUC5	510	GMP synthase [glutamine-h	yes	N/A	0.452	0.166	0.453	8e-14
A7GIN0	510	GMP synthase [glutamine-h	yes	N/A	0.452	0.166	0.430	7e-13
B1IFD1	510	GMP synthase [glutamine-h	yes	N/A	0.452	0.166	0.430	7e-13
B1L1J7	510	GMP synthase [glutamine-h	yes	N/A	0.329	0.121	0.5	7e-13

>sp|Q3THK7|GUAA_MOUSE GMP synthase [glutamine-hydrolyzing] OS=Mus musculus GN=Gmps PE=1 SV=2

 Score =  107 bits (266), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 64/82 (78%), Gaps = 4/82 (4%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query: 63  FHKDELRLYGLQFHPEVDLTNE 84
           FHKDE+R+ G     E+DL  E
Sbjct: 414 FHKDEVRILGR----ELDLPEE 431

Involved in the de novo synthesis of guanine nucleotides which are not only essential for DNA and RNA synthesis, but also provide GTP, which is involved in a number of cellular processes important for cell division.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2

>sp|Q5RA96|GUAA_PONAB GMP synthase [glutamine-hydrolyzing] OS=Pongo abelii GN=GMPS PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query: 63  FHKDELRLYG 72
           FHKDE+R+ G
Sbjct: 414 FHKDEVRILG 423

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|Q4V7C6|GUAA_RAT GMP synthase [glutamine-hydrolyzing] OS=Rattus norvegicus GN=Gmps PE=1 SV=1

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 64/82 (78%), Gaps = 4/82 (4%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query: 63  FHKDELRLYGLQFHPEVDLTNE 84
           FHKDE+R+ G     E+DL  E
Sbjct: 414 FHKDEVRILGR----ELDLPEE 431

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|P49915|GUAA_HUMAN GMP synthase [glutamine-hydrolyzing] OS=Homo sapiens GN=GMPS PE=1 SV=1

 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 354 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query: 63  FHKDELRLYG 72
           FHKDE+R+ G
Sbjct: 414 FHKDEVRILG 423

Involved in the de novo synthesis of guanine nucleotides which are not only essential for DNA and RNA synthesis, but also provide GTP, which is involved in a number of cellular processes important for cell division.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|Q09580|GUAA_CAEEL Probable GMP synthase [glutamine-hydrolyzing] OS=Caenorhabditis elegans GN=M106.4 PE=2 SV=3

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 58/72 (80%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           M++L ++ ++  L QGTLRPDLIESAS LAS  AD IKTHHND+ L+R LR+ GKV+EPL
Sbjct: 378 MKDLNINHDEYFLAQGTLRPDLIESASALASGHADTIKTHHNDTFLVRELRKLGKVVEPL 437

Query: 61  KDFHKDELRLYG 72
           KDFHKDE+R  G
Sbjct: 438 KDFHKDEVRELG 449

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|P32073|GUAA_DICDI GMP synthase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=guaA PE=1 SV=2

 Score = 95.9 bits (237), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 55/72 (76%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           +++L L P    L QGTLRPDLIES+S   S  ADVIKTHHND+ L+R LR+ G+V+EPL
Sbjct: 374 VKKLGLQPEDVYLAQGTLRPDLIESSSKTVSGVADVIKTHHNDTELVRILRDSGRVVEPL 433

Query: 61  KDFHKDELRLYG 72
           KD+HKDE+R  G
Sbjct: 434 KDYHKDEVRELG 445

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|C3KUC5|GUAA_CLOB6 GMP synthase [glutamine-hydrolyzing] OS=Clostridium botulinum (strain 657 / Type Ba4) GN=guaA PE=3 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P       E +LYG+QFHPEV+ T  G+ MLKNFLF+VC L G++T+ S  E+ IK +KE
Sbjct: 152 PCAAMENAEKKLYGVQFHPEVEHTLFGKKMLKNFLFNVCNLKGDWTMSSFAEQQIKAIKE 211

Query: 119 TVGNMKVLVR-KLGLDLGLTPEVVMR 143
            VGN KV+     G+D  +   +V +
Sbjct: 212 KVGNKKVICALSGGVDSSVAAVIVHK 237

Catalyzes the synthesis of GMP from XMP.

Clostridium botulinum (strain 657 / Type Ba4) (taxid: 515621)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|A7GIN0|GUAA_CLOBL GMP synthase [glutamine-hydrolyzing] OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=guaA PE=3 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P       E +LYG+QFHPEV+ T  G+ MLKNFLF+VC L G++++ S  E+ IK +KE
Sbjct: 152 PCAAMENAEKKLYGVQFHPEVEHTLFGKKMLKNFLFNVCNLKGDWSMSSFAEQQIKAIKE 211

Query: 119 TVGNMKVLVR-KLGLDLGLTPEVVMR 143
            VG+ KV+     G+D  +   +V +
Sbjct: 212 KVGDKKVICALSGGVDSSVAAVIVHK 237

Catalyzes the synthesis of GMP from XMP.

Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) (taxid: 441772)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|B1IFD1|GUAA_CLOBK GMP synthase [glutamine-hydrolyzing] OS=Clostridium botulinum (strain Okra / Type B1) GN=guaA PE=3 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P       E +LYG+QFHPEV+ T  G+ MLKNFLF+VC L G++++ S  E+ IK +KE
Sbjct: 152 PCAAMENAEKKLYGVQFHPEVEHTLFGKKMLKNFLFNVCNLKGDWSMSSFAEQQIKAIKE 211

Query: 119 TVGNMKVLVR-KLGLDLGLTPEVVMR 143
            VG+ KV+     G+D  +   +V +
Sbjct: 212 KVGDKKVICALSGGVDSSVAAVIVHK 237

Catalyzes the synthesis of GMP from XMP.

Clostridium botulinum (strain Okra / Type B1) (taxid: 498213)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

>sp|B1L1J7|GUAA_CLOBM GMP synthase [glutamine-hydrolyzing] OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=guaA PE=3 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%)

Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P       E +LYG+QFHPEV+ T  G+ MLKNFLF+VC L G++++ S  E+ IK +KE
Sbjct: 152 PCAAMENAEKKLYGVQFHPEVEHTLFGKKMLKNFLFNVCNLKGDWSMSSFAEQQIKAIKE 211

Query: 119 TVGNMKVL 126
            VG+ KV+
Sbjct: 212 KVGDKKVI 219

Catalyzes the synthesis of GMP from XMP.

Clostridium botulinum (strain Loch Maree / Type A3) (taxid: 498214)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
270012865	687	hypothetical protein TcasGA2_TC030725 [T	0.664	0.181	0.473	3e-34
189240082	748	PREDICTED: similar to gmp synthase [Trib	0.664	0.167	0.473	3e-34
195388470	684	GJ19601 [Drosophila virilis] gi|19414936	0.675	0.185	0.451	3e-32
344237456	1159	GMP synthase [glutamine-hydrolyzing] [Cr	0.664	0.107	0.451	1e-31
242013853	685	GMP synthase, putative [Pediculus humanu	0.675	0.185	0.462	2e-30
380022489	716	PREDICTED: GMP synthase [glutamine-hydro	0.675	0.177	0.435	4e-30
380022491	718	PREDICTED: GMP synthase [glutamine-hydro	0.675	0.176	0.435	4e-30
66522082	718	PREDICTED: GMP synthase [glutamine-hydro	0.675	0.176	0.435	4e-30
345480532	718	PREDICTED: GMP synthase [glutamine-hydro	0.675	0.176	0.446	5e-30
307213208	718	GMP synthase [glutamine-hydrolyzing] [Ha	0.675	0.176	0.440	5e-30

>gi|270012865|gb|EFA09313.1| hypothetical protein TcasGA2_TC030725 [Tribolium castaneum]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 105/188 (55%), Gaps = 63/188 (33%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + +L L P + +L QGTLRPDLIESAS L S+KAD IKTHHNDS L+R LR         
Sbjct: 346 ISDLNLKPEEVVLAQGTLRPDLIESASALVSSKADTIKTHHNDSELVRKLR--------- 396

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTM--LKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
                                 +EGR +  LK+F  D                       
Sbjct: 397 ----------------------SEGRVVEPLKDFHKDE---------------------- 412

Query: 119 TVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIV 178
                   VR LG DLGLTPE+VMRHPFPGPGLAIRV+C EE Y+E+D+SETQVLVKIIV
Sbjct: 413 --------VRALGRDLGLTPELVMRHPFPGPGLAIRVLCAEEPYMERDFSETQVLVKIIV 464

Query: 179 EYDQMFKK 186
           E+DQM +K
Sbjct: 465 EFDQMLQK 472

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240082|ref|XP_001812886.1| PREDICTED: similar to gmp synthase [Tribolium castaneum]

 Score =  150 bits (378), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 105/188 (55%), Gaps = 63/188 (33%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + +L L P + +L QGTLRPDLIESAS L S+KAD IKTHHNDS L+R LR         
Sbjct: 407 ISDLNLKPEEVVLAQGTLRPDLIESASALVSSKADTIKTHHNDSELVRKLR--------- 457

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTM--LKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
                                 +EGR +  LK+F  D                       
Sbjct: 458 ----------------------SEGRVVEPLKDFHKDE---------------------- 473

Query: 119 TVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIV 178
                   VR LG DLGLTPE+VMRHPFPGPGLAIRV+C EE Y+E+D+SETQVLVKIIV
Sbjct: 474 --------VRALGRDLGLTPELVMRHPFPGPGLAIRVLCAEEPYMERDFSETQVLVKIIV 525

Query: 179 EYDQMFKK 186
           E+DQM +K
Sbjct: 526 EFDQMLQK 533

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388470|ref|XP_002052903.1| GJ19601 [Drosophila virilis] gi|194149360|gb|EDW65058.1| GJ19601 [Drosophila virilis]

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 101/186 (54%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + ELKL P + LL QGTLRPDLIESAS++ S  A+ IKTHHND+ LIR LR  G+V+EPL
Sbjct: 341 VAELKLKPEEVLLAQGTLRPDLIESASNMVSTNAETIKTHHNDTDLIRELRNAGRVVEPL 400

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
            DFHKDE+R          DL N+                                    
Sbjct: 401 CDFHKDEVR----------DLGND------------------------------------ 414

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                    LGL   L    V R PFPGPGLAIRV+C EE Y+EKDYSETQV+V++IV+Y
Sbjct: 415 ---------LGLPAEL----VERQPFPGPGLAIRVLCAEEAYMEKDYSETQVIVRVIVDY 461

Query: 181 DQMFKK 186
               +K
Sbjct: 462 KNKLQK 467

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344237456|gb|EGV93559.1| GMP synthase [glutamine-hydrolyzing] [Cricetulus griseus]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/184 (45%), Positives = 100/184 (54%), Gaps = 59/184 (32%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
           FHKDE+R+ G     E+DL                            EEL+         
Sbjct: 414 FHKDEVRILGR----ELDL---------------------------PEELVS-------- 434

Query: 123 MKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQ 182
                               RHPFPGPGLAIRVIC EE YI KD+ ET  ++KI+ ++  
Sbjct: 435 --------------------RHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSA 474

Query: 183 MFKK 186
             KK
Sbjct: 475 SVKK 478

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

>gi|242013853|ref|XP_002427615.1| GMP synthase, putative [Pediculus humanus corporis] gi|212512030|gb|EEB14877.1| GMP synthase, putative [Pediculus humanus corporis]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 101/186 (54%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + EL L P++  L QGTLRPDLIESAS LAS+KA VIKTHHND+ L+R            
Sbjct: 344 ISELNLRPDEVFLGQGTLRPDLIESASVLASDKAVVIKTHHNDTELVR------------ 391

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
                 +LR  G    P           LK+F  D                         
Sbjct: 392 ------QLREAGRVVEP-----------LKDFHKDE------------------------ 410

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                 VR LG DLGL  ++VMRHPFPGPGLAIRVIC EE YI++D+SETQV+VKIIVEY
Sbjct: 411 ------VRALGRDLGLPTDLVMRHPFPGPGLAIRVICAEEPYIQRDFSETQVIVKIIVEY 464

Query: 181 DQMFKK 186
           +QM  K
Sbjct: 465 EQMLLK 470

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022489|ref|XP_003695076.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 1 [Apis florea]

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 98/186 (52%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           M E+ L P +  L QGTLRPDLIESAS LAS KAD IKTHHNDS L+RA           
Sbjct: 371 MAEMGLKPEEVFLGQGTLRPDLIESASALASGKADAIKTHHNDSELVRA----------- 419

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
                  LR  G    P           LK+F  D                         
Sbjct: 420 -------LRAQGHVVEP-----------LKDFHKDE------------------------ 437

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                 VR+LG DLGL   +V RHPFPGPGLA+R++C +E Y++KD+SETQV+VKI+ EY
Sbjct: 438 ------VRQLGCDLGLPASLVARHPFPGPGLAVRILCADEPYMDKDFSETQVIVKIMAEY 491

Query: 181 DQMFKK 186
           +QM +K
Sbjct: 492 EQMLQK 497

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|380022491|ref|XP_003695077.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 2 [Apis florea]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 98/186 (52%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           M E+ L P +  L QGTLRPDLIESAS LAS KAD IKTHHNDS L+RA           
Sbjct: 373 MAEMGLKPEEVFLGQGTLRPDLIESASALASGKADAIKTHHNDSELVRA----------- 421

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
                  LR  G    P           LK+F  D                         
Sbjct: 422 -------LRAQGHVVEP-----------LKDFHKDE------------------------ 439

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                 VR+LG DLGL   +V RHPFPGPGLA+R++C +E Y++KD+SETQV+VKI+ EY
Sbjct: 440 ------VRQLGCDLGLPASLVARHPFPGPGLAVRILCADEPYMDKDFSETQVIVKIMAEY 493

Query: 181 DQMFKK 186
           +QM +K
Sbjct: 494 EQMLQK 499

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|66522082|ref|XP_393336.2| PREDICTED: GMP synthase [glutamine-hydrolyzing] [Apis mellifera]

 Score =  136 bits (342), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 81/186 (43%), Positives = 98/186 (52%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           M E+ L P +  L QGTLRPDLIESAS LAS KAD IKTHHNDS L+RA           
Sbjct: 373 MAEMGLKPEEVFLGQGTLRPDLIESASALASGKADAIKTHHNDSELVRA----------- 421

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
                  LR  G    P           LK+F  D                         
Sbjct: 422 -------LRAQGHVVEP-----------LKDFHKDE------------------------ 439

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                 VR+LG DLGL   +V RHPFPGPGLA+R++C +E Y++KD+SETQV+VKI+ EY
Sbjct: 440 ------VRQLGCDLGLPASLVARHPFPGPGLAVRILCADEPYMDKDFSETQVIVKIMAEY 493

Query: 181 DQMFKK 186
           +QM +K
Sbjct: 494 EQMLQK 499

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|345480532|ref|XP_003424167.1| PREDICTED: GMP synthase [glutamine-hydrolyzing]-like isoform 2 [Nasonia vitripennis]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 98/186 (52%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + EL L P +  L QGTLRPDLIESAS LAS KAD IKTHHNDS L+R            
Sbjct: 373 IAELGLKPEEVFLGQGTLRPDLIESASSLASGKADAIKTHHNDSELVR------------ 420

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
                 ELR  G    P           LK+F  D                         
Sbjct: 421 ------ELRAKGRVIEP-----------LKDFHKDE------------------------ 439

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                 VR+LG DLGL   +V RHPFPGPGLAIR+IC EE ++++D+SET+VLVKII EY
Sbjct: 440 ------VRQLGCDLGLPAPLVQRHPFPGPGLAIRIICAEEPFMDRDFSETRVLVKIIAEY 493

Query: 181 DQMFKK 186
           +QM +K
Sbjct: 494 EQMLQK 499

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|307213208|gb|EFN88703.1| GMP synthase [glutamine-hydrolyzing] [Harpegnathos saltator]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 82/186 (44%), Positives = 97/186 (52%), Gaps = 59/186 (31%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           M E+ L P    L QGTLRPDLIESAS L S KADVIKTHHNDS L+R            
Sbjct: 373 MAEMGLKPEDVFLGQGTLRPDLIESASALVSGKADVIKTHHNDSELVRV----------- 421

Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
                  LR  G    P           LK+F  D                         
Sbjct: 422 -------LRAQGHVVEP-----------LKDFHKDE------------------------ 439

Query: 121 GNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEY 180
                 VR+LG DLGL   +V+RHPFPGPGLA+R++C +E YIEKD+SETQV+VKI+ EY
Sbjct: 440 ------VRQLGCDLGLPTSLVVRHPFPGPGLAVRILCADEPYIEKDFSETQVIVKIMAEY 493

Query: 181 DQMFKK 186
           +QM +K
Sbjct: 494 EQMLQK 499

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
ZFIN|ZDB-GENE-040426-1503	692	gmps "guanine monphosphate syn	0.404	0.109	0.701	6.7e-40
FB|FBgn0000239	720	bur "burgundy" [Drosophila mel	0.372	0.097	0.657	1.1e-38
MGI|MGI:2448526	693	Gmps "guanine monophosphate sy	0.414	0.112	0.658	4.8e-22
RGD|1310063	693	Gmps "guanine monphosphate syn	0.414	0.112	0.658	4.8e-22
UNIPROTKB|Q4V7C6	693	Gmps "GMP synthase [glutamine-	0.414	0.112	0.658	4.8e-22
UNIPROTKB|F1NAQ8	693	GMPS "Uncharacterized protein"	0.404	0.109	0.688	4.8e-22
UNIPROTKB|F8W720	594	GMPS "GMP synthase [glutamine-	0.404	0.127	0.675	5.5e-22
UNIPROTKB|J9NTM1	674	GMPS "Uncharacterized protein"	0.404	0.112	0.675	7.4e-22
UNIPROTKB|P49915	693	GMPS "GMP synthase [glutamine-	0.404	0.109	0.675	7.8e-22
UNIPROTKB|F1MC86	694	GMPS "Uncharacterized protein"	0.404	0.109	0.675	7.9e-22

ZFIN|ZDB-GENE-040426-1503 gmps "guanine monphosphate synthetase" [Danio rerio (taxid:7955)]

 Score = 272 (100.8 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
 Identities = 54/77 (70%), Positives = 61/77 (79%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P    L QGTLRPDLIESASHLAS KA+VIKTHHND+ LIR LR++GKVIEPLKD
Sbjct:   353 EMNLKPEDVYLAQGTLRPDLIESASHLASGKAEVIKTHHNDTELIRKLRDEGKVIEPLKD 412

Query:    63 FHKDELRLYGLQFH-PE 78
             FHKDE+R  G +   PE
Sbjct:   413 FHKDEVRALGRELGLPE 429

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006177 "GMP biosynthetic process" evidence=IEA

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0000239 bur "burgundy" [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 46/70 (65%), Positives = 54/70 (77%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             ELKL P + +L QGTLRPDLIESAS + S  A+ IKTHHND+ LIR LR  G+V+EPL D
Sbjct:   343 ELKLKPEEVMLAQGTLRPDLIESASSMVSTNAETIKTHHNDTDLIRELRNAGRVVEPLCD 402

Query:    63 FHKDELRLYG 72
             FHKDE+R  G
Sbjct:   403 FHKDEVRDLG 412

GO:0003921 "GMP synthase activity" evidence=ISS

GO:0006177 "GMP biosynthetic process" evidence=IEA;ISS

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0043234 "protein complex" evidence=IPI

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0035800 "ubiquitin-specific protease activator activity" evidence=IDA

GO:2000152 "regulation of ubiquitin-specific protease activity" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0005700 "polytene chromosome" evidence=IDA

MGI|MGI:2448526 Gmps "guanine monophosphate synthetase" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 54/82 (65%), Positives = 64/82 (78%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query:    63 FHKDELRLYGLQFHPEVDLTNE 84
             FHKDE+R+ G     E+DL  E
Sbjct:   414 FHKDEVRILGR----ELDLPEE 431

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003921 "GMP synthase activity" evidence=ISO

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006177 "GMP biosynthetic process" evidence=ISO

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=ISO

RGD|1310063 Gmps "guanine monphosphate synthetase" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 54/82 (65%), Positives = 64/82 (78%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query:    63 FHKDELRLYGLQFHPEVDLTNE 84
             FHKDE+R+ G     E+DL  E
Sbjct:   414 FHKDEVRILGR----ELDLPEE 431

GO:0003921 "GMP synthase activity" evidence=IDA

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006177 "GMP biosynthetic process" evidence=IEA;IDA

GO:0006541 "glutamine metabolic process" evidence=IEP

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IDA

GO:0042493 "response to drug" evidence=IEP

UNIPROTKB|Q4V7C6 Gmps "GMP synthase [glutamine-hydrolyzing]" [Rattus norvegicus (taxid:10116)]

 Score = 266 (98.7 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 54/82 (65%), Positives = 64/82 (78%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   354 EMSLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query:    63 FHKDELRLYGLQFHPEVDLTNE 84
             FHKDE+R+ G     E+DL  E
Sbjct:   414 FHKDEVRILGR----ELDLPEE 431

GO:0016462 "pyrophosphatase activity" evidence=IEA

UNIPROTKB|F1NAQ8 GMPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 53/77 (68%), Positives = 62/77 (80%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA+VIKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   354 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAEVIKTHHNDTELIRKLREEGKVIEPLKD 413

Query:    63 FHKDELRLYGLQFH-PE 78
             FHKDE+R+ G +   PE
Sbjct:   414 FHKDEVRVLGRELGLPE 430

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006177 "GMP biosynthetic process" evidence=IEA

GO:0016462 "pyrophosphatase activity" evidence=IEA

UNIPROTKB|F8W720 GMPS "GMP synthase [glutamine-hydrolyzing]" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 52/77 (67%), Positives = 62/77 (80%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   255 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 314

Query:    63 FHKDELRLYGLQFH-PE 78
             FHKDE+R+ G +   PE
Sbjct:   315 FHKDEVRILGRELGLPE 331

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006177 "GMP biosynthetic process" evidence=IEA

GO:0016462 "pyrophosphatase activity" evidence=IEA

UNIPROTKB|J9NTM1 GMPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 264 (98.0 bits), Expect = 7.4e-22, P = 7.4e-22
 Identities = 52/77 (67%), Positives = 62/77 (80%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   351 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 410

Query:    63 FHKDELRLYGLQFH-PE 78
             FHKDE+R+ G +   PE
Sbjct:   411 FHKDEVRILGRELGLPE 427

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0006177 "GMP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA

UNIPROTKB|P49915 GMPS "GMP synthase [glutamine-hydrolyzing]" [Homo sapiens (taxid:9606)]

 Score = 264 (98.0 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 52/77 (67%), Positives = 62/77 (80%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   354 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 413

Query:    63 FHKDELRLYGLQFH-PE 78
             FHKDE+R+ G +   PE
Sbjct:   414 FHKDEVRILGRELGLPE 430

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0003921 "GMP synthase activity" evidence=TAS

GO:0009113 "purine nucleobase biosynthetic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006144 "purine nucleobase metabolic process" evidence=TAS

GO:0009168 "purine ribonucleoside monophosphate biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

UNIPROTKB|F1MC86 GMPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 264 (98.0 bits), Expect = 7.9e-22, P = 7.9e-22
 Identities = 52/77 (67%), Positives = 62/77 (80%)

Query:     3 ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
             E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct:   355 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 414

Query:    63 FHKDELRLYGLQFH-PE 78
             FHKDE+R+ G +   PE
Sbjct:   415 FHKDEVRILGRELGLPE 431

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0006177 "GMP biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003922 "GMP synthase (glutamine-hydrolyzing) activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4V7C6	GUAA_RAT	6, ., 3, ., 5, ., 2	0.6585	0.4148	0.1125	yes	N/A
Q3THK7	GUAA_MOUSE	6, ., 3, ., 5, ., 2	0.6585	0.4148	0.1125	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	LOW CONFIDENCE prediction!
3rd Layer	6.3.5.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
cd01997	295	cd01997, GMP_synthase_C, The C-terminal domain of	2e-21
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	1e-19
PLN02347	536	PLN02347, PLN02347, GMP synthetase	6e-14
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	8e-14
cd01997	295	cd01997, GMP_synthase_C, The C-terminal domain of	6e-13
PRK00074	511	PRK00074, guaA, GMP synthase; Reviewed	1e-12
COG0519	315	COG0519, GuaA, GMP synthase, PP-ATPase domain/subu	3e-11
TIGR00884	311	TIGR00884, guaA_Cterm, GMP synthase (glutamine-hyd	1e-10
COG0519	315	COG0519, GuaA, GMP synthase, PP-ATPase domain/subu	2e-10
TIGR00884	311	TIGR00884, guaA_Cterm, GMP synthase (glutamine-hyd	4e-10
TIGR00888	188	TIGR00888, guaA_Nterm, GMP synthase (glutamine-hyd	2e-09
cd01742	181	cd01742, GATase1_GMP_Synthase, Type 1 glutamine am	2e-09
PLN02347	536	PLN02347, PLN02347, GMP synthetase	5e-09
PRK05670	189	PRK05670, PRK05670, anthranilate synthase componen	9e-08
PLN02347	536	PLN02347, PLN02347, GMP synthetase	1e-07
COG0518	198	COG0518, GuaA, GMP synthase - Glutamine amidotrans	2e-07
PRK00919	307	PRK00919, PRK00919, GMP synthase subunit B; Valida	3e-07
PRK00919	307	PRK00919, PRK00919, GMP synthase subunit B; Valida	6e-07
COG0512	191	COG0512, PabA, Anthranilate/para-aminobenzoate syn	1e-06
cd01743	184	cd01743, GATase1_Anthranilate_Synthase, Type 1 glu	2e-06
PRK00758	184	PRK00758, PRK00758, GMP synthase subunit A; Valida	2e-06
pfam00117	186	pfam00117, GATase, Glutamine amidotransferase clas	7e-06
PRK14607	534	PRK14607, PRK14607, bifunctional glutamine amidotr	2e-05
CHL00101	190	CHL00101, trpG, anthranilate synthase component 2	2e-05
PRK07765	214	PRK07765, PRK07765, para-aminobenzoate synthase co	4e-05
PRK07649	195	PRK07649, PRK07649, para-aminobenzoate/anthranilat	7e-04
PLN02335	222	PLN02335, PLN02335, anthranilate synthase	0.001

>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase

 Score = 88.7 bits (221), Expect = 2e-21
 Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 7/75 (9%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
            ++L L      L QGTL PD+IES S   S  AD IK+HHN   L      + K+IEPL
Sbjct: 95  AKKLGLA---EYLAQGTLYPDVIESGSGKGS--ADTIKSHHNVGGLPE--DMKLKLIEPL 147

Query: 61  KDFHKDELRLYGLQF 75
           +D  KDE+R  G + 
Sbjct: 148 RDLFKDEVRELGREL 162

It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes. Length = 295

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 85.1 bits (212), Expect = 1e-19
 Identities = 31/70 (44%), Positives = 50/70 (71%), Gaps = 3/70 (4%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
              +E + YG+QFHPEV  T +G+ +L+NF+FD+CG  G++T+++  EE I+ ++E VG+
Sbjct: 156 IANEERKFYGVQFHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGD 215

Query: 123 MKVLVRKLGL 132
            KV+   LGL
Sbjct: 216 KKVI---LGL 222

Length = 511

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 68.6 bits (168), Expect = 6e-14
 Identities = 27/55 (49%), Positives = 40/55 (72%)

Query: 67  ELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVG 121
           E R+YGLQ+HPEV  + +G   L++FLFDVCG+T ++ ++   EE I+ +K TVG
Sbjct: 173 ERRIYGLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVG 227

Length = 536

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 68.2 bits (168), Expect = 8e-14
 Identities = 25/33 (75%), Positives = 29/33 (87%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VRKLGL+LGL  E+V RHPFPGPGLAIR++ GE
Sbjct: 370 VRKLGLELGLPEEIVYRHPFPGPGLAIRIL-GE 401

Length = 511

>gnl|CDD|238955 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase

 Score = 64.8 bits (159), Expect = 6e-13
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEER 161
           VR+LG +LGL  E+V RHPFPGPGLA+R++     
Sbjct: 155 VRELGRELGLPEEIVERHPFPGPGLAVRILGEVTE 189

It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes. Length = 295

>gnl|CDD|234614 PRK00074, guaA, GMP synthase; Reviewed

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 32/75 (42%), Positives = 43/75 (57%), Gaps = 9/75 (12%)

Query: 2   EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEP 59
           EE K       L QGTL PD+IES     + KA  IK+HHN    +  L E  + K++EP
Sbjct: 309 EEAKKLGGVKFLAQGTLYPDVIESGG---TKKAATIKSHHN----VGGLPEDMKLKLVEP 361

Query: 60  LKDFHKDELRLYGLQ 74
           L++  KDE+R  GL+
Sbjct: 362 LRELFKDEVRKLGLE 376

Length = 511

>gnl|CDD|223593 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 22/33 (66%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VR+LG +LGL  E+V RHPFPGPGLA+R++ GE
Sbjct: 174 VRELGRELGLPEEIVYRHPFPGPGLAVRIL-GE 205

Length = 315

>gnl|CDD|233169 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 6/61 (9%)

Query: 13  LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
           L QGT+ PD+IESA+      A VIK+HHN   L   ++   K++EPL++  KDE+R  G
Sbjct: 121 LAQGTIYPDVIESAA----GTAHVIKSHHNVGGLPEDMKL--KLVEPLRELFKDEVRKLG 174

Query: 73  L 73
            
Sbjct: 175 K 175

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 311

>gnl|CDD|223593 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 6/62 (9%)

Query: 13  LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
           L QGT+ PD+IES +     KA  IK+HHN   L   +  + K++EPL++  KDE+R  G
Sbjct: 125 LAQGTIYPDVIESGT----GKAGTIKSHHNVGGLPEDM--KLKLVEPLRELFKDEVRELG 178

Query: 73  LQ 74
            +
Sbjct: 179 RE 180

Length = 315

>gnl|CDD|233169 TIGR00884, guaA_Cterm, GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit

 Score = 57.3 bits (139), Expect = 4e-10
 Identities = 24/33 (72%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VRKLG +LGL  E+V RHPFPGPGLA+RV+ GE
Sbjct: 170 VRKLGKELGLPEEIVWRHPFPGPGLAVRVL-GE 201

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 311

>gnl|CDD|129966 TIGR00888, guaA_Nterm, GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 67  ELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           E  +YG+QFHPEV  T  G  +L+NF++DVCG
Sbjct: 155 EKPIYGVQFHPEVTHTEYGNELLENFVYDVCG 186

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 188

>gnl|CDD|153213 cd01742, GATase1_GMP_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 16/27 (59%), Positives = 22/27 (81%)

Query: 67  ELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           E ++YG+QFHPEV  T +G+ +LKNFL
Sbjct: 155 EKKIYGVQFHPEVTHTEKGKEILKNFL 181

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site. Length = 181

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 31/73 (42%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNK--ADVIKTHHNDSPLIRALREQGKVIEPL 60
           E KL      L QGTL PD+IES     S +  +  IK+HHN   L + +  + K+IEPL
Sbjct: 329 EQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDM--KLKLIEPL 386

Query: 61  KDFHKDELRLYGL 73
           K   KDE+R  G 
Sbjct: 387 KLLFKDEVRKLGR 399

Length = 536

>gnl|CDD|235552 PRK05670, PRK05670, anthranilate synthase component II; Provisional

 Score = 49.4 bits (119), Expect = 9e-08
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
               EL +YG+QFHPE  LT  G  +L+NFL
Sbjct: 155 VRHKELPIYGVQFHPESILTEHGHKLLENFL 185

Length = 189

>gnl|CDD|215197 PLN02347, PLN02347, GMP synthetase

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
           VRKLG  LG+    + RHPFPGPGLA+RV+
Sbjct: 394 VRKLGRLLGVPEAFLKRHPFPGPGLAVRVL 423

Length = 536

>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 65  KDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           +   R YG+QFHPEV     G  +L+NF  ++CG
Sbjct: 163 RYGKRAYGVQFHPEVTHEY-GEALLENFAHEICG 195

Length = 198

>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VR++   LGL  E+  R PFPGPGLA+R+I GE
Sbjct: 168 VREVARALGLPEEISERMPFPGPGLAVRII-GE 199

Length = 307

>gnl|CDD|179167 PRK00919, PRK00919, GMP synthase subunit B; Validated

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 14/70 (20%)

Query: 2   EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEP 59
           EE+  +     L QGT+ PD IES           IK+HHN    +  L E    K++EP
Sbjct: 112 EEVAKEIGAEYLVQGTIAPDWIESEGG--------IKSHHN----VGGLPEGMVLKIVEP 159

Query: 60  LKDFHKDELR 69
           L+D +KDE+R
Sbjct: 160 LRDLYKDEVR 169

Length = 307

>gnl|CDD|223586 COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
               +L +YG+QFHPE  LT  G  +L+NFL
Sbjct: 158 VRHKKLPIYGVQFHPESILTEYGHRILENFL 188

Length = 191

>gnl|CDD|153214 cd01743, GATase1_Anthranilate_Synthase, Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 13/55 (23%)

Query: 39  THHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           T   +  +I ALR            H+D L +YG+QFHPE  LT  G  +L+NFL
Sbjct: 143 TASTEDGVIMALR------------HRD-LPIYGVQFHPESILTEYGLRLLENFL 184

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the presence of phosphoribosyl-anthranilate transferase (PRTase) activity. PRTase catalyses the second step in tryptophan biosynthesis and results in the addition of 5-phosphoribosyl-1-pyrophosphate to anthranilate to create N-5'-phosphoribosyl-anthranilate. In E.coli, the first step in the conversion of chorismate to PABA involves two proteins: PabA and PabB which co-operate to transfer the amide nitrogen of glutamine to chorismate forming 4-amino-4 deoxychorismate (ADC). PabA acts as a glutamine amidotransferase, supplying an amino group to PabB, which carries out the amination reaction. A third protein PabC then mediates elimination of pyruvate and aromatization to give PABA. Several organisms have bipartite proteins containing fused domains homologous to PabA and PabB commonly called PABA synthases. These hybrid PABA synthases may produce ADC and not PABA. Length = 184

>gnl|CDD|179112 PRK00758, PRK00758, GMP synthase subunit A; Validated

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           HK+   +YG+QFHPEV  T  G  + KNFL ++CG
Sbjct: 150 HKE-KPIYGVQFHPEVAHTEYGEEIFKNFL-EICG 182

Length = 184

>gnl|CDD|215729 pfam00117, GATase, Glutamine amidotransferase class-I

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 66  DELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96
            E  ++G+QFHPE  LT  G  +L NF   +
Sbjct: 156 KENPIFGVQFHPESSLTPGGPELLFNFFIKL 186

Length = 186

>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           HK E  ++G+QFHPE  LT EG+ +LKNFL
Sbjct: 158 HK-EHPIFGVQFHPESILTEEGKRILKNFL 186

Length = 534

>gnl|CDD|214365 CHL00101, trpG, anthranilate synthase component 2

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           HK    L G+QFHPE  LT  G+ +L+NFL
Sbjct: 157 HKKYKMLRGIQFHPESLLTTHGQQILRNFL 186

Length = 190

>gnl|CDD|181107 PRK07765, PRK07765, para-aminobenzoate synthase component II; Provisional

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 14/72 (19%)

Query: 39  THHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           T   DS +I A+R            H+ EL ++G+QFHPE  LT  G  ML N+L  VCG
Sbjct: 148 TARTDSGVIMAVR------------HR-ELPIHGVQFHPESVLTEGGHRMLANWL-TVCG 193

Query: 99  LTGNFTLKSREE 110
              +  L  R E
Sbjct: 194 WAPDEALVRRLE 205

Length = 214

>gnl|CDD|181066 PRK07649, PRK07649, para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           HK  L + G+QFHPE  +T+ G+ +L+NF+
Sbjct: 157 HK-TLPIEGVQFHPESIMTSHGKELLQNFI 185

Length = 195

>gnl|CDD|177969 PLN02335, PLN02335, anthranilate synthase

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           H+    + G+QFHPE  +T EG+T+++NF+
Sbjct: 181 HRKYKHIQGVQFHPESIITTEGKTIVRNFI 210

Length = 222

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
PLN02347	536	GMP synthetase	99.94
PRK00074	511	guaA GMP synthase; Reviewed	99.93
KOG1622|consensus	552		99.93
COG0512	191	PabA Anthranilate/para-aminobenzoate synthases com	99.86
PRK09522	531	bifunctional glutamine amidotransferase/anthranila	99.68
KOG0026|consensus	223		99.66
PRK07765	214	para-aminobenzoate synthase component II; Provisio	99.64
PRK08007	187	para-aminobenzoate synthase component II; Provisio	99.58
PLN02889	918	oxo-acid-lyase/anthranilate synthase	99.56
TIGR00566	188	trpG_papA glutamine amidotransferase of anthranila	99.51
PRK07649	195	para-aminobenzoate/anthranilate synthase glutamine	99.48
PRK06774	191	para-aminobenzoate synthase component II; Provisio	99.47
PRK08857	193	para-aminobenzoate synthase component II; Provisio	99.46
TIGR00888	188	guaA_Nterm GMP synthase (glutamine-hydrolyzing), N	99.42
PRK05637	208	anthranilate synthase component II; Provisional	99.41
CHL00101	190	trpG anthranilate synthase component 2	99.4
PRK06895	190	putative anthranilate synthase component II; Provi	99.39
KOG1224|consensus	767		99.37
PRK14607	534	bifunctional glutamine amidotransferase/anthranila	99.3
PLN02335	222	anthranilate synthase	99.3
KOG1622|consensus	552		99.29
PRK05670	189	anthranilate synthase component II; Provisional	99.24
TIGR01815	717	TrpE-clade3 anthranilate synthase, alpha proteobac	99.22
PRK00758	184	GMP synthase subunit A; Validated	99.22
TIGR01823	742	PabB-fungal aminodeoxychorismate synthase, fungal	99.21
cd01743	184	GATase1_Anthranilate_Synthase Type 1 glutamine ami	99.21
COG0519	315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	99.2
cd01742	181	GATase1_GMP_Synthase Type 1 glutamine amidotransfe	99.19
COG0519	315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	99.16
PRK13566	720	anthranilate synthase; Provisional	99.13
COG0518	198	GuaA GMP synthase - Glutamine amidotransferase dom	99.13
PRK11366	254	puuD gamma-glutamyl-gamma-aminobutyrate hydrolase;	99.06
cd01745	189	GATase1_2 Subgroup of proteins having the Type 1 g	99.03
cd01748	198	GATase1_IGP_Synthase Type 1 glutamine amidotransfe	99.01
cd01744	178	GATase1_CPSase Small chain of the glutamine-depend	99.0
CHL00188	210	hisH imidazole glycerol phosphate synthase subunit	98.97
PRK12564	360	carbamoyl phosphate synthase small subunit; Review	98.86
PF00117	192	GATase: Glutamine amidotransferase class-I; InterP	98.85
PRK13181	199	hisH imidazole glycerol phosphate synthase subunit	98.83
COG2071	243	Predicted glutamine amidotransferases [General fun	98.8
PRK14004	210	hisH imidazole glycerol phosphate synthase subunit	98.8
PRK12838	354	carbamoyl phosphate synthase small subunit; Review	98.79
TIGR01855	196	IMP_synth_hisH imidazole glycerol phosphate syntha	98.79
PRK13146	209	hisH imidazole glycerol phosphate synthase subunit	98.78
PRK13152	201	hisH imidazole glycerol phosphate synthase subunit	98.77
PRK13141	205	hisH imidazole glycerol phosphate synthase subunit	98.72
TIGR01368	358	CPSaseIIsmall carbamoyl-phosphate synthase, small	98.7
PRK00768	268	nadE NAD synthetase; Reviewed	98.61
PRK13170	196	hisH imidazole glycerol phosphate synthase subunit	98.6
PTZ00323	294	NAD+ synthase; Provisional	98.57
PF02540	242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	98.54
COG0171	268	NadE NAD synthase [Coenzyme metabolism]	98.48
PRK13143	200	hisH imidazole glycerol phosphate synthase subunit	98.46
CHL00197	382	carA carbamoyl-phosphate synthase arginine-specifi	98.45
COG0118	204	HisH Glutamine amidotransferase [Amino acid transp	98.42
TIGR01737	227	FGAM_synth_I phosphoribosylformylglycinamidine syn	98.39
PRK00919	307	GMP synthase subunit B; Validated	98.27
PLN02347	536	GMP synthetase	98.25
PF07722	217	Peptidase_C26: Peptidase C26; InterPro: IPR011697	98.25
cd01741	188	GATase1_1 Subgroup of proteins having the Type 1 g	98.23
PRK13525	189	glutamine amidotransferase subunit PdxT; Provision	98.2
PLN02771	415	carbamoyl-phosphate synthase (glutamine-hydrolyzin	98.2
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.13
PRK13527	200	glutamine amidotransferase subunit PdxT; Provision	98.11
cd01746	235	GATase1_CTP_Synthase Type 1 glutamine amidotransfe	98.08
cd00553	248	NAD_synthase NAD+ synthase is a homodimer, which c	98.07
PRK13142	192	hisH imidazole glycerol phosphate synthase subunit	98.06
PRK13980	265	NAD synthetase; Provisional	98.03
cd01747	273	GATase1_Glutamyl_Hydrolase Type 1 glutamine amidot	97.98
PRK05380	533	pyrG CTP synthetase; Validated	97.95
TIGR00884	311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	97.88
PRK09065	237	glutamine amidotransferase; Provisional	97.82
PRK00876	326	nadE NAD synthetase; Reviewed	97.81
PRK06186	229	hypothetical protein; Validated	97.8
PRK06490	239	glutamine amidotransferase; Provisional	97.78
PRK13981	540	NAD synthetase; Provisional	97.77
TIGR00337	525	PyrG CTP synthase. CTP synthase is involved in pyr	97.68
PLN02327	557	CTP synthase	97.59
TIGR03800	184	PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, gl	97.54
PRK05665	240	amidotransferase; Provisional	97.51
PRK08250	235	glutamine amidotransferase; Provisional	97.47
TIGR00552	250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	97.45
PRK03619	219	phosphoribosylformylglycinamidine synthase I; Prov	97.35
PRK02628	679	nadE NAD synthetase; Reviewed	97.34
PRK07053	234	glutamine amidotransferase; Provisional	97.23
PRK07567	242	glutamine amidotransferase; Provisional	97.2
TIGR00884	311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	97.07
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	97.03
COG0505	368	CarA Carbamoylphosphate synthase small subunit [Am	97.02
cd01749	183	GATase1_PB Glutamine Amidotransferase (GATase_I) i	96.85
cd01997	295	GMP_synthase_C The C-terminal domain of GMP synthe	96.79
PLN02832	248	glutamine amidotransferase subunit of pyridoxal 5'	96.56
TIGR03573	343	WbuX N-acetyl sugar amidotransferase. This enzyme	95.89
KOG0370|consensus	1435		95.66
KOG1559|consensus	340		94.78
TIGR00268	252	conserved hypothetical protein TIGR00268. The N-te	94.78
COG0482	356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	94.7
COG1606	269	ATP-utilizing enzymes of the PP-loop superfamily [	94.64
PRK00919	307	GMP synthase subunit B; Validated	94.54
PF03054	356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	94.23
cd01997	295	GMP_synthase_C The C-terminal domain of GMP synthe	94.04
KOG2805|consensus	377		93.57
cd01996	154	Alpha_ANH_like_III This is a subfamily of Adenine	93.56
PRK14665	360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	93.5
cd01712	177	ThiI ThiI is required for thiazole synthesis in th	93.17
PRK00074	511	guaA GMP synthase; Reviewed	93.02
KOG0623|consensus	541		92.72
PRK14664	362	tRNA-specific 2-thiouridylase MnmA; Provisional	92.46
cd01991	269	Asn_Synthase_B_C The C-terminal domain of Asparagi	91.81
PRK13795	636	hypothetical protein; Provisional	91.2
cd01986	103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	90.96
TIGR00364	201	exsB protein. This protein family is represented b	90.95
PRK10696	258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	90.93
PF00733	255	Asn_synthase: Asparagine synthase; InterPro: IPR00	90.74
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	90.71
COG0037	298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	90.53
PRK05253	301	sulfate adenylyltransferase subunit 2; Provisional	90.19
PRK08349	198	hypothetical protein; Validated	89.17
cd01998	349	tRNA_Me_trans tRNA methyl transferase. This family	89.16
cd01993	185	Alpha_ANH_like_II This is a subfamily of Adenine n	88.97
COG0504	533	PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide	88.97
PRK00143	346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	88.91
TIGR00420	352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	88.77
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	88.57
PRK01565	394	thiamine biosynthesis protein ThiI; Provisional	88.53
cd01992	185	PP-ATPase N-terminal domain of predicted ATPase of	87.93
cd01995	169	ExsB ExsB is a transcription regulator related pro	87.74
PTZ00077	586	asparagine synthetase-like protein; Provisional	87.55
TIGR00342	371	thiazole biosynthesis/tRNA modification protein Th	87.44
cd01990	202	Alpha_ANH_like_I This is a subfamily of Adenine nu	87.4
cd01713	173	PAPS_reductase This domain is found in phosphoaden	86.88
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	86.63
PRK13794	479	hypothetical protein; Provisional	86.59
PRK08384	381	thiamine biosynthesis protein ThiI; Provisional	86.42
PRK10660	436	tilS tRNA(Ile)-lysidine synthetase; Provisional	85.9
PRK11106	231	queuosine biosynthesis protein QueC; Provisional	85.44
PRK09431	554	asnB asparagine synthetase B; Provisional	85.27
PRK14561	194	hypothetical protein; Provisional	85.26
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	85.26
PRK13820	394	argininosuccinate synthase; Provisional	83.9
PLN00200	404	argininosuccinate synthase; Provisional	83.42
PRK04527	400	argininosuccinate synthase; Provisional	83.3
PRK00509	399	argininosuccinate synthase; Provisional	83.27
PRK08576	438	hypothetical protein; Provisional	82.91
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	81.94
COG1365	255	Predicted ATPase (PP-loop superfamily) [General fu	81.33
TIGR00032	394	argG argininosuccinate synthase. argG in bacteria,	81.15

>PLN02347 GMP synthetase

Probab=99.94  E-value=1.9e-27  Score=222.80  Aligned_cols=137  Identities=26%  Similarity=0.391  Sum_probs=111.8

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeeccccccccccc-------------------cceecc-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE-------------------QGKVIE-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~-------------------~s~vi~-----pi~Ai~~~~~~i~   71 (188)
                      +.++|+.|.+.+.+.||.....  .+.+.+||+++|.                   ++.+++     +++|+++.++++|
T Consensus       100 a~alGG~V~~~~~~e~G~~~v~--i~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~lP~g~~vlA~s~~~~iaai~~~~~~i~  177 (536)
T PLN02347        100 VQKLGGEVKPGEKQEYGRMEIR--VVCGSQLFGDLPSGETQTVWMSHGDEAVKLPEGFEVVAKSVQGAVVAIENRERRIY  177 (536)
T ss_pred             HHHcCCEEEecCCcccceEEEE--EcCCChhhhcCCCCceEEEEEEEEEEeeeCCCCCEEEEEeCCCcEEEEEECCCCEE
Confidence            3468999999988889987643  2445556666642                   222222     4789998889999


Q ss_pred             EEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhC-CCcEEEEeeccccCCChhhHhhcCC---C
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVG-NMKVLVRKLGLDLGLTPEVVMRHPF---P  147 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg-~~kVi~~~~GlSGGvDSavva~~~~---p  147 (188)
                      |+|||||+.+|+.|.+||+||+..+|+|+++|+|++++++.++.||++++ +++|++   |+||||||+|+|.++.   .
T Consensus       178 GvQFHPE~~~t~~G~~iL~NFl~~ic~~~~~~~~~~~~~~~i~~i~~~~~~~~~vvv---alSGGVDSsvla~l~~~alG  254 (536)
T PLN02347        178 GLQYHPEVTHSPKGMETLRHFLFDVCGVTADWKMQDVLEEQIELIKATVGPDEHVIC---ALSGGVDSTVAATLVHKAIG  254 (536)
T ss_pred             EEEccCCCCccchHHHHHHHHHHHHhCcCCCcCcchHHHHHHHHHHHHhccCCeEEE---EecCChhHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999 567888   9999999999994443   3


Q ss_pred             CCceEEEEec
Q psy7151         148 GPGLAIRVIC  157 (188)
Q Consensus       148 ~~~L~v~~~~  157 (188)
                      ++.+++-+..
T Consensus       255 ~~v~av~id~  264 (536)
T PLN02347        255 DRLHCVFVDN  264 (536)
T ss_pred             CcEEEEEEeC
Confidence            5677777653

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.93  E-value=2.9e-26  Score=213.58  Aligned_cols=136  Identities=32%  Similarity=0.536  Sum_probs=107.0

Q ss_pred             eecCCeEEecCcccCCccee-----------------EEeeeccccccccccccceecc-----cccccccccccEEEEe
Q psy7151          17 TLRPDLIESASHLASNKADV-----------------IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~-----------------V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQ   74 (188)
                      .++||.+.+.+.+.+|.+..                 +++.|++.  +..+|.++.+++     +++|+++.+.++||+|
T Consensus        90 ~~lGG~V~~~~~~e~G~~~i~i~~~~~Lf~~l~~~~~v~~~H~d~--V~~lp~g~~vlA~s~~~~v~ai~~~~~~i~GvQ  167 (511)
T PRK00074         90 HQLGGKVERAGKREYGRAELEVDNDSPLFKGLPEEQDVWMSHGDK--VTELPEGFKVIASTENCPIAAIANEERKFYGVQ  167 (511)
T ss_pred             HHhCCeEEecCCcccceEEEEEcCCChhhhcCCCceEEEEECCeE--EEecCCCcEEEEEeCCCCEEEEEeCCCCEEEEe
Confidence            35778888777666775433                 22233333  334444444433     5889998888999999


Q ss_pred             ecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC---CCCce
Q psy7151          75 FHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF---PGPGL  151 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~---p~~~L  151 (188)
                      ||||+.+|+.|.+||+||+..||+|+++|+|++++++.+++||++++++++++   |+|||+||+|++..+.   ..+.+
T Consensus       168 FHPE~~~t~~G~~il~nFl~~i~~~~~~~~~~~~~~~~~~~l~~~v~~~~vlv---a~SGGvDS~vll~ll~~~lg~~v~  244 (511)
T PRK00074        168 FHPEVTHTPQGKKLLENFVFDICGCKGDWTMENFIEEAIEEIREQVGDKKVIL---GLSGGVDSSVAAVLLHKAIGDQLT  244 (511)
T ss_pred             CCCCcCCchhHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhcCCCcEEE---EeCCCccHHHHHHHHHHHhCCceE
Confidence            99999999999999999999999999999999999999999999999999988   9999999999994433   34567


Q ss_pred             EEEEec
Q psy7151         152 AIRVIC  157 (188)
Q Consensus       152 ~v~~~~  157 (188)
                      ++.+..
T Consensus       245 av~vd~  250 (511)
T PRK00074        245 CVFVDH  250 (511)
T ss_pred             EEEEeC
Confidence            776653

>KOG1622|consensus

Probab=99.93  E-value=9.4e-26  Score=205.46  Aligned_cols=131  Identities=41%  Similarity=0.668  Sum_probs=116.8

Q ss_pred             EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEE  111 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~  111 (188)
                      |+..|.++  +.++|.++.+++     |++++.+..+++||+|||||+.+|+.|+++++||+..||+|.+||+|+++.++
T Consensus       142 VlltHgds--l~~v~~g~kv~a~s~n~~va~i~~e~kkiyglqfhpEV~~t~~g~~ll~nFl~~vc~~~~n~tmenre~e  219 (552)
T KOG1622|consen  142 VLLTHGDS--LSKVPEGFKVVAFSGNKPVAGILNELKKIYGLQFHPEVTLTPNGKELLKNFLFDVCGCSGNFTMENREEE  219 (552)
T ss_pred             eeeccccc--hhhccccceeEEeecCcceeeehhhhhhhhcCCCCCcccccCchhHHHHHHHHHHcCCccCcchhhhhHH
Confidence            55567777  778888888775     58899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEeeccccCCChhhHh----hcCCCCCceEEEEecCCchhhhhhhhh--hhhHHH
Q psy7151         112 LIKYVKETVGNMKVLVRKLGLDLGLTPEVVM----RHPFPGPGLAIRVICGEERYIEKDYSE--TQVLVK  175 (188)
Q Consensus       112 iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva----~~~~p~~~L~v~~~~~~~~~~~~~~~~--~~~~~~  175 (188)
                      .|.|||+.||+.+|++   .+||||||+|+|    +++.|++..++.   .+|+++|+.+++  ...|++
T Consensus       220 ~I~~i~k~vG~~~Vl~---~vSGgvdStV~a~Ll~~alg~~R~~ai~---vdNG~mrk~Ea~~V~~tl~~  283 (552)
T KOG1622|consen  220 CINEIRKWVGDYKVLV---AVSGGVDSTVCAALLRRALGPDRVHAIH---VDNGFMRKKEAEQVEKTLVY  283 (552)
T ss_pred             HHHHHHHHhcccceEE---EecCCchHHHHHHHHHHhhCCCceEEEE---ecccchhhhHHHHHHHHHHH
Confidence            9999999999999999   999999999999    677788888876   689999999998  344444

>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.86  E-value=8.5e-23  Score=169.12  Aligned_cols=79  Identities=30%  Similarity=0.459  Sum_probs=72.3

Q ss_pred             eeeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceeccc------------------cccccccccc
Q psy7151          15 QGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIEP------------------LKDFHKDELR   69 (188)
Q Consensus        15 ~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p------------------i~Ai~~~~~~   69 (188)
                      .|.+||+.|.++++|+|||+|.+  +|+.+++|+++|       |||+++.+                  +||++|++.|
T Consensus        87 i~~~fGg~V~~a~~~~HGK~s~i--~h~g~~iF~glp~~f~v~RYHSLvv~~~~lP~~l~vtA~~~d~~~IMai~h~~~p  164 (191)
T COG0512          87 IAEAFGGKVVRAKEPMHGKTSII--THDGSGLFAGLPNPFTVTRYHSLVVDPETLPEELEVTAESEDGGVIMAVRHKKLP  164 (191)
T ss_pred             HHHHhCCEEEecCCCcCCeeeee--ecCCcccccCCCCCCEEEeeEEEEecCCCCCCceEEEEEeCCCCEEEEEeeCCCC
Confidence            46799999999999999999977  788899999998       88988642                  8899999999


Q ss_pred             EEEEeecccccCChhhHHHHHHHHHH
Q psy7151          70 LYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        70 i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +|||||||||+.|+.|.+|++||+..
T Consensus       165 i~gvQFHPESilT~~G~~il~Nfl~~  190 (191)
T COG0512         165 IYGVQFHPESILTEYGHRILENFLRL  190 (191)
T ss_pred             EEEEecCCccccccchHHHHHHHHhh
Confidence            99999999999999999999999964

>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.68  E-value=5.4e-17  Score=152.35  Aligned_cols=96  Identities=26%  Similarity=0.300  Sum_probs=81.7

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceecc--------------cccccccccccEEEEe
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIE--------------PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~--------------pi~Ai~~~~~~i~GVQ   74 (188)
                      +.+||+.|.+.+++.||+++.+  .|.+..+|.++|       ||++.+.              .++|+++.++++||||
T Consensus        91 a~a~GG~V~~~~~~~~G~~~~i--~~~~~~lf~~~~~~~~v~~~Hs~~v~~lP~~l~vlA~sd~~v~ai~~~~~~i~GVQ  168 (531)
T PRK09522         91 VEAYGGYVGQAGEILHGKASSI--EHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHDADRVCGFQ  168 (531)
T ss_pred             HHhcCCEEEeCCceeeeeEEEE--eecCCccccCCCCCcEEEEehheecccCCCCcEEEEecCCCEEEEEECCCCEEEEE
Confidence            4689999999999999999888  577777888775       6665542              2678999888999999


Q ss_pred             ecccccCChhhHHHHHHHHH-HhhCCCCCcccchHHHHHH
Q psy7151          75 FHPEVDLTNEGRTMLKNFLF-DVCGLTGNFTLKSREEELI  113 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~-~i~~~~~~W~~~~~ie~iI  113 (188)
                      ||||+++|++|.+||+||+. .+|+|+++|+|.++++++.
T Consensus       169 FHPEs~~T~~G~~il~NFl~~~~~~~~~~~~~~~~l~~~~  208 (531)
T PRK09522        169 FHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLY  208 (531)
T ss_pred             ecCccccCcchHHHHHHHHHHHhhcCCCCCCHHHHHHHhh
Confidence            99999999999999999996 5689999999988887764

>KOG0026|consensus

Probab=99.66  E-value=2.8e-17  Score=134.48  Aligned_cols=85  Identities=29%  Similarity=0.484  Sum_probs=73.6

Q ss_pred             eeEeeeecCCeEEecC-cccCCcceeEEeeecc---cccccccc-------ccceecc----c--------------ccc
Q psy7151          12 LLCQGTLRPDLIESAS-HLASNKADVIKTHHND---SPLIRALR-------EQGKVIE----P--------------LKD   62 (188)
Q Consensus        12 ~~~~g~~~g~~I~~~~-~~~HGk~~~V~s~H~~---~~Lf~~lp-------~~s~vi~----p--------------i~A   62 (188)
                      +-|.+.+||+.|.+++ +++|||+|.|  +|+.   .++|+++|       |||++..    |              +||
T Consensus       102 lQCi~e~fGGkv~~a~~~i~HGK~S~i--~~D~~~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMg  179 (223)
T KOG0026|consen  102 LQCIGEAFGGKIVRSPFGVMHGKSSMV--HYDEKGEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMA  179 (223)
T ss_pred             hhhhhhhhCcEEeccCcceeecccccc--ccCCccccccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEe
Confidence            3478899999999999 9999999999  6776   68999998       7777643    1              788


Q ss_pred             ccccccc-EEEEeecccccCChhhHHHHHHHHHHhhC
Q psy7151          63 FHKDELR-LYGLQFHPEVDLTNEGRTMLKNFLFDVCG   98 (188)
Q Consensus        63 i~~~~~~-i~GVQFHPE~~~t~~G~~il~nFl~~i~~   98 (188)
                      .+|+.+. +-|||||||++.|++|+.+++||+....+
T Consensus       180 aRHkKY~~ieGVQfHPESIlteeGk~~irNflni~~~  216 (223)
T KOG0026|consen  180 ARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIVEK  216 (223)
T ss_pred             eeccccccccceeecchhhhhhhhHHHHHHHHHhccc
Confidence            9998876 99999999999999999999999987643

>PRK07765 para-aminobenzoate synthase component II; Provisional

Probab=99.64  E-value=1.9e-16  Score=132.81  Aligned_cols=96  Identities=30%  Similarity=0.470  Sum_probs=75.1

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------------------ccceecc-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------------------EQGKVIE-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------------------~~s~vi~-----pi~Ai~~~~~~i~   71 (188)
                      +.++|+.|.+.+.+.||.+..+  .|...++|.+++                   ++..+++     +++|+++.++++|
T Consensus        90 a~a~GG~v~~~~~~~~g~~~~v--~~~~~~~~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~vqa~~~~~~~i~  167 (214)
T PRK07765         90 GVAFGATVDRAPELLHGKTSSV--HHTGVGVLAGLPDPFTATRYHSLTILPETLPAELEVTARTDSGVIMAVRHRELPIH  167 (214)
T ss_pred             HHHhCCEEeeCCCCccCceeEE--EECCCccccCCCCccEEEecchheEecccCCCceEEEEEcCCCcEEEEEeCCCCEE
Confidence            4689999999988889987766  344444454443                   3323222     3789998888899


Q ss_pred             EEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIK  114 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~  114 (188)
                      |||||||+++|+.|.++++||+ .+|+++++|++.+++++.++
T Consensus       168 gvQfHPE~~~t~~g~~~l~~f~-~~~~~~~~~~~~~~~~~~~~  209 (214)
T PRK07765        168 GVQFHPESVLTEGGHRMLANWL-TVCGWAPDEALVRRLENEVA  209 (214)
T ss_pred             EEeeCCCcccCcchHHHHHHHH-HHhccccchhhcccccchhh
Confidence            9999999999999999999999 68999999999998776543

>PRK08007 para-aminobenzoate synthase component II; Provisional

Probab=99.58  E-value=1.9e-15  Score=124.01  Aligned_cols=77  Identities=29%  Similarity=0.450  Sum_probs=64.1

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceecc-----------------cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIE-----------------PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~-----------------pi~Ai~~~~~~i~   71 (188)
                      +.+||+.|.+.+.+.||+++.+  .|...++|++++       +|++.+.                 +++|+++.+.++|
T Consensus        86 a~a~Gg~v~~~~~~~~g~~~~v--~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~~~~~~i~a~~~~~~~i~  163 (187)
T PRK08007         86 AQAFGGKVVRAAKVMHGKTSPI--THNGEGVFRGLANPLTVTRYHSLVVEPDSLPACFEVTAWSETREIMGIRHRQWDLE  163 (187)
T ss_pred             HHHcCCEEEeCCCcccCCceEE--EECCCCcccCCCCCcEEEEcchhEEccCCCCCCeEEEEEeCCCcEEEEEeCCCCEE
Confidence            5689999999999999998887  566666776664       4554331                 3779999888999


Q ss_pred             EEeecccccCChhhHHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      |||||||+++|+.|.+||+||++
T Consensus       164 GvQfHPE~~~t~~G~~il~nFl~  186 (187)
T PRK08007        164 GVQFHPESILSEQGHQLLANFLH  186 (187)
T ss_pred             EEEeCCcccCCcchHHHHHHHhh
Confidence            99999999999999999999985

>PLN02889 oxo-acid-lyase/anthranilate synthase

Probab=99.56  E-value=2.6e-15  Score=147.95  Aligned_cols=80  Identities=30%  Similarity=0.349  Sum_probs=70.5

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-----------ccceecc--------------------------
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------EQGKVIE--------------------------   58 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------~~s~vi~--------------------------   58 (188)
                      +.+||+.|.+++.++||+++.|  .|...+||+++|           |||+++.                          
T Consensus       176 ~~~~Gg~V~~~~~~~HG~~s~I--~h~~~~lF~glp~~~~~~f~v~RYHSL~v~~~~lP~~L~~~A~t~~~~~~~~~~~~  253 (918)
T PLN02889        176 GYVHGARIVHAPEPVHGRLSEI--EHNGCRLFDDIPSGRNSGFKVVRYHSLVIDAESLPKELVPIAWTSSSDTLSFLESQ  253 (918)
T ss_pred             HHhcCceEEeCCCceeeeeeeE--eecCchhhcCCCcCCCCCceEEeCCCcccccCCCCCceEEEEEECCCccccccccc
Confidence            5789999999999999999999  688888888775           7887651                          


Q ss_pred             --------------------------------------------cccccccccccEEEEeecccccCChhhHHHHHHHHH
Q psy7151          59 --------------------------------------------PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        59 --------------------------------------------pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                                                                  -+||++|.++|+||||||||+++|++|.+||+||+.
T Consensus       254 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~~GVQfHPESi~t~~G~~l~~nF~~  333 (918)
T PLN02889        254 KSGLVPDAYESQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPHYGLQFHPESIATCYGRQIFKNFRE  333 (918)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccCCCCeeEEEEECCCceEEEEeCCccccCchhHHHHHHHHH
Confidence                                                        278999999999999999999999999999999998


Q ss_pred             Hhh
Q psy7151          95 DVC   97 (188)
Q Consensus        95 ~i~   97 (188)
                      ...
T Consensus       334 ~~~  336 (918)
T PLN02889        334 ITQ  336 (918)
T ss_pred             HHH
Confidence            554

>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase

Probab=99.51  E-value=1.4e-14  Score=118.85  Aligned_cols=77  Identities=30%  Similarity=0.468  Sum_probs=60.3

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c------cccccccccccE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E------PLKDFHKDELRL   70 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~------pi~Ai~~~~~~i   70 (188)
                      +.++|+.|.+.+.+.||.++.|  .+.+++++.+++       +|++.+            +      .++|+++.++++
T Consensus        86 ~~~~GG~v~~~~~~~~g~~~~v--~~~~~~~~~~l~~~~~v~~~H~~~v~~~~l~~~~~v~a~s~~~~~v~a~~~~~~~i  163 (188)
T TIGR00566        86 GQAFGGDVVRANTVMHGKTSEI--EHNGAGIFRGLFNPLTATRYHSLVVEPETLPTCFPVTAWEEENIEIMAIRHRDLPL  163 (188)
T ss_pred             HHHcCCEEeeCCCccccceEEE--EECCCccccCCCCCcEEEEcccceEecccCCCceEEEEEcCCCCEEEEEEeCCCCE
Confidence            4679999999999999988777  455544555543       333322            1      477889888899


Q ss_pred             EEEeecccccCChhhHHHHHHHHH
Q psy7151          71 YGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        71 ~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      ||||||||+.+|+.|.+||+||+.
T Consensus       164 ~gvQfHPE~~~t~~G~~il~nfl~  187 (188)
T TIGR00566       164 EGVQFHPESILSEQGHQLLANFLH  187 (188)
T ss_pred             EEEEeCCCccCCcccHHHHHHHHh
Confidence            999999999999999999999985

This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.

>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated

Probab=99.48  E-value=4.7e-14  Score=116.81  Aligned_cols=80  Identities=21%  Similarity=0.438  Sum_probs=64.1

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~   71 (188)
                      +.++|+.|.+.+.+.||....+  .+.+..||+++|       +|++.+            +     +++|+++.++++|
T Consensus        86 a~~lGg~V~~~~~~~~G~~~~i--~~~~~~lf~~~~~~~~v~~~H~~~v~~~~lp~~~~~~a~s~~~~v~a~~~~~~~i~  163 (195)
T PRK07649         86 AQVFGGEVVRAERLMHGKTSLM--HHDGKTIFSDIPNPFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMAIRHKTLPIE  163 (195)
T ss_pred             HHHcCCEEeeCCCcccCCeEEE--EECCChhhcCCCCCCEEEEechheEecccCCCCeEEEEEcCCCcEEEEEECCCCEE
Confidence            4678999999999999998777  455566777765       343322            1     3778998888999


Q ss_pred             EEeecccccCChhhHHHHHHHHHHhh
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFDVC   97 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~i~   97 (188)
                      |+|||||+.+|+.|..||+||+....
T Consensus       164 gvQFHPE~~~t~~g~~il~nfl~~~~  189 (195)
T PRK07649        164 GVQFHPESIMTSHGKELLQNFIRKYS  189 (195)
T ss_pred             EEEECCCCCCCccHHHHHHHHHHHhH
Confidence            99999999999999999999997553

>PRK06774 para-aminobenzoate synthase component II; Provisional

Probab=99.47  E-value=4.5e-14  Score=115.65  Aligned_cols=77  Identities=30%  Similarity=0.455  Sum_probs=58.8

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c---------ccccccccc
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E---------PLKDFHKDE   67 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~---------pi~Ai~~~~   67 (188)
                      +.+||+.|.+.+++.||....+  .|.+..||++++       +|++.+            +         .++|+++++
T Consensus        86 a~~~GG~v~~~~~~~~G~~~~~--~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~~d~~~~~i~~~~~~~  163 (191)
T PRK06774         86 GQAFGARVVRARQVMHGKTSAI--CHSGQGVFRGLNQPLTVTRYHSLVIAADSLPGCFELTAWSERGGEMDEIMGIRHRT  163 (191)
T ss_pred             HHHhCCEEEeCCcceecceEEE--EecCchhhcCCCCCcEEEEeCcceeeccCCCCCeEEEEEeCCCCCcceEEEEEeCC
Confidence            4578999999988889987766  455555666654       444333            1         134567777


Q ss_pred             ccEEEEeecccccCChhhHHHHHHHHH
Q psy7151          68 LRLYGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        68 ~~i~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      .++||||||||+.+|+.|.+||+||+.
T Consensus       164 ~~i~GvQfHPE~~~~~~G~~i~~nf~~  190 (191)
T PRK06774        164 LPLEGVQFHPESILSEQGHQLLDNFLK  190 (191)
T ss_pred             CCEEEEEECCCcCCCccHHHHHHHHhh
Confidence            799999999999999999999999985

>PRK08857 para-aminobenzoate synthase component II; Provisional

Probab=99.46  E-value=7.6e-14  Score=114.72  Aligned_cols=78  Identities=24%  Similarity=0.390  Sum_probs=59.1

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------------------ccceecc----------cccccccc
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------------------EQGKVIE----------PLKDFHKD   66 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------------------~~s~vi~----------pi~Ai~~~   66 (188)
                      +.++|+.|.+.+.+.||.+..+  .|.+..+|.+++                   .++.+++          .++|+++.
T Consensus        86 a~a~Gg~v~~~~~~~~G~~~~~--~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~v~a~s~~~~~~~~~i~~~~~~  163 (193)
T PRK08857         86 AQVFGGQVVRARQVMHGKTSPI--RHTGRSVFKGLNNPLTVTRYHSLVVKNDTLPECFELTAWTELEDGSMDEIMGFQHK  163 (193)
T ss_pred             HHHhCCEEEeCCCceeCceEEE--EECCCcccccCCCccEEEEccEEEEEcCCCCCCeEEEEEecCcCCCcceEEEEEeC
Confidence            4678999999999999986555  344445565443                   3333321          25677788


Q ss_pred             cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      ++|+||||||||+.+|+.|++||+||+..
T Consensus       164 ~~pi~gvQfHPE~~~t~~g~~i~~nFl~~  192 (193)
T PRK08857        164 TLPIEAVQFHPESIKTEQGHQLLANFLAR  192 (193)
T ss_pred             CCCEEEEeeCCCcCCCcchHHHHHHHHhh
Confidence            88999999999999999999999999964

>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit

Probab=99.42  E-value=3.6e-13  Score=109.76  Aligned_cols=82  Identities=34%  Similarity=0.571  Sum_probs=59.5

Q ss_pred             eecCCeEEecCcccCCcceeEEeeeccccccccc-----------------cccceecc-----cccccccccccEEEEe
Q psy7151          17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-----------------REQGKVIE-----PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-----------------p~~s~vi~-----pi~Ai~~~~~~i~GVQ   74 (188)
                      .++|+.+.+.+.+.+|.....  ...+..||.++                 |.+..+++     +++|+++.+.++||+|
T Consensus        85 ~~lgg~v~~~~~~~~g~~~v~--~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~vla~~~~~~v~a~~~~~~~~~g~Q  162 (188)
T TIGR00888        85 KQLGGEVGRAEKREYGKAELE--ILDEDDLFRGLPDESTVWMSHGDKVKELPEGFKVLATSDNCPVAAMAHEEKPIYGVQ  162 (188)
T ss_pred             HhcCceEecCCCccceeEEEE--EecCCHhhcCCCCCcEEEeEccceeecCCCCCEEEEECCCCCeEEEEECCCCEEEEe
Confidence            457888888877777754332  12233445444                 33333322     4788888877999999


Q ss_pred             ecccccCChhhHHHHHHHHHHhhCCC
Q psy7151          75 FHPEVDLTNEGRTMLKNFLFDVCGLT  100 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~~i~~~~  100 (188)
                      ||||+.+++.|.+||+||+...|+|+
T Consensus       163 fHPE~~~~~~g~~i~~~f~~~~~~~~  188 (188)
T TIGR00888       163 FHPEVTHTEYGNELLENFVYDVCGCE  188 (188)
T ss_pred             eCCccCCChhhHHHHHHHHHHhhCCC
Confidence            99999999999999999999899986

separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.

>PRK05637 anthranilate synthase component II; Provisional

Probab=99.41  E-value=2.4e-13  Score=113.85  Aligned_cols=60  Identities=20%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             eeEEeeeccccccccccccceecc--------cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          35 DVIKTHHNDSPLIRALREQGKVIE--------PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        35 ~~V~s~H~~~~Lf~~lp~~s~vi~--------pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ..|+++|++.  +..+|+++.+++        .++|+++.++++||||||||+.+|++|.+||+||+..+
T Consensus       138 ~~V~~~H~~~--v~~lp~~~~vlA~s~~~~~~v~~a~~~~~~~~~GvQfHPE~~~T~~G~~il~nfl~~~  205 (208)
T PRK05637        138 VPIARYHSLG--CVVAPDGMESLGTCSSEIGPVIMAAETTDGKAIGLQFHPESVLSPTGPIILSRCVEQL  205 (208)
T ss_pred             eEEEEechhh--hhcCCCCeEEEEEecCCCCCEEEEEEECCCCEEEEEeCCccCcCCCHHHHHHHHHHHH
Confidence            3455555555  555666655543        14677888889999999999999999999999999764

>CHL00101 trpG anthranilate synthase component 2

Probab=99.40  E-value=2.9e-13  Score=111.12  Aligned_cols=77  Identities=31%  Similarity=0.440  Sum_probs=59.5

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccce------------ecc-----ccccccccccc-E
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGK------------VIE-----PLKDFHKDELR-L   70 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~------------vi~-----pi~Ai~~~~~~-i   70 (188)
                      +.++|+.|.+.+.+.||....+  .+....+|.++|       +|++            +++     +++|+++.+++ +
T Consensus        86 a~~~Gg~V~~~~~~~~g~~~~~--~~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~vla~s~~~~v~a~~~~~~~~i  163 (190)
T CHL00101         86 GYLFGGKIIKAPKPMHGKTSKI--YHNHDDLFQGLPNPFTATRYHSLIIDPLNLPSPLEITAWTEDGLIMACRHKKYKML  163 (190)
T ss_pred             HHHhCCEEEECCCcccCceeeE--eeCCcHhhccCCCceEEEcchhheeecccCCCceEEEEEcCCCcEEEEEeCCCCCE
Confidence            4579999999999999988766  334444665544       2322            221     36788888888 9


Q ss_pred             EEEeecccccCChhhHHHHHHHHH
Q psy7151          71 YGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        71 ~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      ||||||||+.+|++|.+||+||+.
T Consensus       164 ~gvQfHPE~~~~~~g~~l~~nf~~  187 (190)
T CHL00101        164 RGIQFHPESLLTTHGQQILRNFLS  187 (190)
T ss_pred             EEEEeCCccCCChhHHHHHHHHHh
Confidence            999999999999999999999986

>PRK06895 putative anthranilate synthase component II; Provisional

Probab=99.39  E-value=4e-13  Score=110.06  Aligned_cols=78  Identities=22%  Similarity=0.409  Sum_probs=61.9

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceecc-----------------cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVIE-----------------PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~-----------------pi~Ai~~~~~~i~   71 (188)
                      +.++|+.|.+.+.+.||....++. ..++.||+++|       +|++.+.                 .++|+++.++|+|
T Consensus        86 a~~~Gg~V~~~~~~~~g~~~~v~~-~~~~~l~~~~~~~~~v~~~Hs~~v~~~~lp~~l~~~a~~~~~~i~a~~~~~~pi~  164 (190)
T PRK06895         86 CEFFGGELYNLNNVRHGQQRPLKV-RSNSPLFDGLPEEFNIGLYHSWAVSEENFPTPLEITAVCDENVVMAMQHKTLPIY  164 (190)
T ss_pred             HHHhCCeEeecCCCccCceEEEEE-CCCChhhhcCCCceEEEcchhheecccccCCCeEEEEECCCCcEEEEEECCCCEE
Confidence            456899999988889999877743 34566888776       3433331                 2668888888899


Q ss_pred             EEeecccccCChhhHHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      |+|||||+..|+.|.+||+||+.
T Consensus       165 GvQFHPE~~~~~~g~~il~nf~~  187 (190)
T PRK06895        165 GVQFHPESYISEFGEQILRNWLA  187 (190)
T ss_pred             EEEeCCCcCCCcchHHHHHHHHh
Confidence            99999999999999999999985

>KOG1224|consensus

Probab=99.37  E-value=2.6e-13  Score=126.69  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=69.9

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-----------ccceeccc-------------------cccccc
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------EQGKVIEP-------------------LKDFHK   65 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------~~s~vi~p-------------------i~Ai~~   65 (188)
                      |.+.|+.|+.+.+|.||+.+.+  +|+++.+|.++|           |||+++.+                   +|++.+
T Consensus       109 ~l~hGA~v~~~n~p~HGrvs~i--~~~~~~~f~gi~sg~~~~fK~~RYHSL~in~~pid~l~il~t~~ddng~ilMsi~~  186 (767)
T KOG1224|consen  109 GLVHGAHVVHANEPVHGRVSGI--EHDGNILFSGIPSGRNSDFKVVRYHSLIINSLPIDLLPILWTIYDDNGHILMSIMH  186 (767)
T ss_pred             hhhcccceecCCCcccceeeeE--EecCcEEEccCCCCCcccceeEEeEEEEecCCchhhhcceeEeecCCceEEEEeec
Confidence            6788999999999999999999  888887777776           88888652                   678888


Q ss_pred             ccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      +.+|.||+|||||++.|+.|.+||+||++.-
T Consensus       187 ~~fPhfG~qyHPES~~s~~g~~lfkNFl~lt  217 (767)
T KOG1224|consen  187 SSFPHFGLQYHPESIASTYGSQLFKNFLDLT  217 (767)
T ss_pred             cCCCccceeeChHHhhhhhhHHHHHHHHHhh
Confidence            9999999999999999999999999999743

>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional

Probab=99.30  E-value=3.8e-12  Score=119.66  Aligned_cols=92  Identities=32%  Similarity=0.447  Sum_probs=70.0

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~   71 (188)
                      +.+||+.|.+.+...||.+..+  .+.+.++|.++|       +|++.+            +     +++|+++.++++|
T Consensus        87 a~a~Gg~V~~~~~~~~G~~~~v--~~~~~~lf~~~~~~~~v~~~Hs~~v~~~~lp~~~~vlA~s~d~~i~a~~~~~~pi~  164 (534)
T PRK14607         87 GYAFGGKIVHAKRILHGKTSPI--DHNGKGLFRGIPNPTVATRYHSLVVEEASLPECLEVTAKSDDGEIMGIRHKEHPIF  164 (534)
T ss_pred             HHHcCCeEecCCccccCCceeE--EECCCcchhcCCCCcEEeeccchheecccCCCCeEEEEEcCCCCEEEEEECCCCEE
Confidence            4578999999999999998877  455566676654       333321            1     3789999888999


Q ss_pred             EEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEEL  112 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~i  112 (188)
                      |||||||+.+|+.|..||+||+....   ..+++.++++++
T Consensus       165 GvQFHPE~~~t~~g~~i~~nFl~~~~---~~~~~~~~i~~l  202 (534)
T PRK14607        165 GVQFHPESILTEEGKRILKNFLNYQR---EEIDIKSYLKKL  202 (534)
T ss_pred             EEEeCCCCCCChhHHHHHHHHHHHhh---ccCCHHHHHHHh
Confidence            99999999999999999999998533   355666666554

>PLN02335 anthranilate synthase

Probab=99.30  E-value=4.2e-12  Score=107.16  Aligned_cols=81  Identities=23%  Similarity=0.387  Sum_probs=59.8

Q ss_pred             eeecCCeEEecCc-ccCCcceeEEeee-cccccccccc-------ccceec-------------c-----cccccccccc
Q psy7151          16 GTLRPDLIESASH-LASNKADVIKTHH-NDSPLIRALR-------EQGKVI-------------E-----PLKDFHKDEL   68 (188)
Q Consensus        16 g~~~g~~I~~~~~-~~HGk~~~V~s~H-~~~~Lf~~lp-------~~s~vi-------------~-----pi~Ai~~~~~   68 (188)
                      +.++|+.+.+.+. +.||....+.... .+..||.++|       +|++.+             +     .++|+++.+.
T Consensus       105 a~alGg~v~~~~~~~~~G~~~~v~~~~~~~~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~  184 (222)
T PLN02335        105 GEAFGGKIVRSPFGVMHGKSSPVHYDEKGEEGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKY  184 (222)
T ss_pred             HHHhCCEEEeCCCccccCceeeeEECCCCCChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCC
Confidence            3578999999875 5799888773211 1235777765       333322             1     3778998876


Q ss_pred             c-EEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          69 R-LYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        69 ~-i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      + +||||||||+.+|++|..||+||+..+
T Consensus       185 ~~i~GvQfHPE~~~~~~g~~i~~nF~~~~  213 (222)
T PLN02335        185 KHIQGVQFHPESIITTEGKTIVRNFIKII  213 (222)
T ss_pred             CCEEEEEeCCCCCCChhHHHHHHHHHHHH
Confidence            6 999999999999999999999999754

>KOG1622|consensus

Probab=99.29  E-value=6.3e-13  Score=122.05  Aligned_cols=123  Identities=56%  Similarity=0.883  Sum_probs=105.5

Q ss_pred             ccCCCCCCCe--eeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccc
Q psy7151           2 EELKLDPNQT--LLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEV   79 (188)
Q Consensus         2 ~~~~~~~~~~--~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~   79 (188)
                      ++++..++++  +++|||+|++.|++++....|++.++|++|++.+|.+.+..-..+++|+..+...+.           
T Consensus       327 ~~l~~k~~~~~~flaQgtL~Pd~ieS~s~~g~~~a~tIKThhn~~~L~r~lrklgK~ieplk~~~kDEv-----------  395 (552)
T KOG1622|consen  327 SELNKKHGEKESFLAQGTLRPDLIESASVYGSGHAETIKTHHNDTGLIRDLRKLGKVIEPLKDFHKDEV-----------  395 (552)
T ss_pred             HHhhhccCccceeeecccccchhhhhccccCCchhhhhhcccccchHHHHHHHhcccCchhHHHHHHHH-----------
Confidence            5677888888  999999999999999988888999999999999999988665577777766554332           


Q ss_pred             cCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCC
Q psy7151          80 DLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE  159 (188)
Q Consensus        80 ~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~  159 (188)
                                                                      +.+|--.|++-.++.|+|||||+|++|++|..
T Consensus       396 ------------------------------------------------r~lgk~lGlp~~Lv~rhPfpGPgLaIRvL~~~  427 (552)
T KOG1622|consen  396 ------------------------------------------------RELGKDLGLPESLVPRHPFPGPGLAIRVLCAV  427 (552)
T ss_pred             ------------------------------------------------HHhhhhcCCchhhhccCCCCCCCeEEEEeecc
Confidence                                                            66688889999999999999999999999988


Q ss_pred             chhhhhhhhhhhhHHHHHhhhhhhhhh
Q psy7151         160 ERYIEKDYSETQVLVKIIVEYDQMFKK  186 (188)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (188)
                      +..   ++++.+.+++....|.+.++|
T Consensus       428 ~~~---~~~~~~ii~~~~~~f~~~i~~  451 (552)
T KOG1622|consen  428 TAR---DLPQLEIIRKVDRIFIKSIRK  451 (552)
T ss_pred             ccc---cchHHHHHHHHHHHHHHHhcc
Confidence            766   888999999999999888763

>PRK05670 anthranilate synthase component II; Provisional

Probab=99.24  E-value=1.4e-11  Score=100.69  Aligned_cols=78  Identities=31%  Similarity=0.465  Sum_probs=58.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeeccccccccc-------------------cccceecc-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-------------------REQGKVIE-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-------------------p~~s~vi~-----pi~Ai~~~~~~i~   71 (188)
                      +.++|+.|.+.+.+.||.+..+.  +....+|+++                   |.+..+++     +++|+++.+.++|
T Consensus        86 a~alGg~v~~~~~~~~g~~~~v~--~~~~~l~~~~~~~~~v~~~H~~~v~~~~lp~~~~~la~s~~~~i~a~~~~~~~~~  163 (189)
T PRK05670         86 GEAFGGKVVRAKEIMHGKTSPIE--HDGSGIFAGLPNPFTVTRYHSLVVDRESLPDCLEVTAWTDDGEIMGVRHKELPIY  163 (189)
T ss_pred             HHHhCCEEEecCCcccCceeEEE--eCCCchhccCCCCcEEEcchhheeccccCCCceEEEEEeCCCcEEEEEECCCCEE
Confidence            35689999999888899776663  3444455444                   33322222     4788988878999


Q ss_pred             EEeecccccCChhhHHHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      |+|||||+..+++|..||+||++.
T Consensus       164 gvQfHPE~~~~~~g~~i~~~F~~~  187 (189)
T PRK05670        164 GVQFHPESILTEHGHKLLENFLEL  187 (189)
T ss_pred             EEeeCCCcCCCcchHHHHHHHHHh
Confidence            999999999999999999999974

>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade

Probab=99.22  E-value=1.3e-11  Score=119.84  Aligned_cols=83  Identities=19%  Similarity=0.205  Sum_probs=64.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~   71 (188)
                      +.+||+.|.+.+.+.||+.+.|.. .....||.++|       +|++.+            +     +++|+++.+.++|
T Consensus       602 a~a~GG~V~~~~~p~~G~~~~V~~-~~~~~Lf~~lp~~~~v~~~HS~~~~~~~LP~~~~vlA~s~d~~v~Ai~~~~~~i~  680 (717)
T TIGR01815       602 VEAFGGALDVLPEPVHGKASRIRV-LGPDALFAGLPERLTVGRYHSLFARRDRLPAELTVTAESADGLIMAIEHRRLPLA  680 (717)
T ss_pred             hhhhCCEEEECCCCeeCcceEEEE-CCCChhhhcCCCCCEEEEECCCCcccccCCCCeEEEEEeCCCcEEEEEECCCCEE
Confidence            456899999999999998877743 23345777776       555422            1     3778999888999


Q ss_pred             EEeecccccCChh---hHHHHHHHHHHhhCC
Q psy7151          72 GLQFHPEVDLTNE---GRTMLKNFLFDVCGL   99 (188)
Q Consensus        72 GVQFHPE~~~t~~---G~~il~nFl~~i~~~   99 (188)
                      |||||||+.+|+.   |.+||+||+..+|+-
T Consensus       681 GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~~  711 (717)
T TIGR01815       681 AVQFHPESIMTLDGGAGLAMIGNVVDRLAAG  711 (717)
T ss_pred             EEEeCCeeCCccCchhHHHHHHHHHHHHhhc
Confidence            9999999998864   799999999999853

This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.

>PRK00758 GMP synthase subunit A; Validated

Probab=99.22  E-value=1.7e-11  Score=99.60  Aligned_cols=77  Identities=22%  Similarity=0.341  Sum_probs=55.4

Q ss_pred             eecCCeEEecCcccCCcceeEEeeecccccccccc-----------------ccceecc-----cccccccccccEEEEe
Q psy7151          17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------------EQGKVIE-----PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------------~~s~vi~-----pi~Ai~~~~~~i~GVQ   74 (188)
                      .++|+.|.+.+.+.+|.....  ......+|.++|                 .+..+++     +++|+++.+.++||+|
T Consensus        82 ~a~Gg~v~~~~~~~~g~~~i~--~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~v~a~~~~~~~~~g~Q  159 (184)
T PRK00758         82 KAFGGEVGRGEYGEYALVEVE--ILDEDDILKGLPPEIRVWASHADEVKELPDGFEILARSDICEVEAMKHKEKPIYGVQ  159 (184)
T ss_pred             HhcCcEEecCCCceeeeEEEE--EcCCChhhhCCCCCcEEEeehhhhhhhCCCCCEEEEECCCCCEEEEEECCCCEEEEE
Confidence            467899998888888865433  122334555554                 3322222     3778888777899999


Q ss_pred             ecccccCChhhHHHHHHHHHH
Q psy7151          75 FHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~~   95 (188)
                      ||||+..++.|++||+||+..
T Consensus       160 fHPE~~~~~~g~~l~~~f~~~  180 (184)
T PRK00758        160 FHPEVAHTEYGEEIFKNFLEI  180 (184)
T ss_pred             cCCccCCCchHHHHHHHHHHH
Confidence            999999999999999999953

>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade

Probab=99.21  E-value=1.6e-11  Score=119.53  Aligned_cols=80  Identities=19%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc------ccceecc-------------------cccccccccccE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR------EQGKVIE-------------------PLKDFHKDELRL   70 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp------~~s~vi~-------------------pi~Ai~~~~~~i   70 (188)
                      +.++|+.|.+.+.+.||..+.|  .|...++|.+++      +|++.+.                   .+||+++.++|+
T Consensus       100 a~a~GG~v~~~~~~~hG~~~~v--~~~~~~lf~gl~~~~v~~~Hs~~v~~~~~~~l~~~~~a~~~~~~~i~ai~h~~~pi  177 (742)
T TIGR01823       100 CLAQGADISRLPTPKHGQVYEM--HTNDAAIFCGLFSVKSTRYHSLYANPEGIDTLLPLCLTEDEEGIILMSAQTKKKPW  177 (742)
T ss_pred             HhhcCCEEEECCCCCcCeEEEE--EECCccccCCCCCCceeEEEEEEccCCCCCcceEEEEEEcCCCCeEEEEEEcCCce
Confidence            4679999999999999998888  566666777664      5554331                   267899999999


Q ss_pred             EEEeecccccCChhh-HHHHHHHHHHhh
Q psy7151          71 YGLQFHPEVDLTNEG-RTMLKNFLFDVC   97 (188)
Q Consensus        71 ~GVQFHPE~~~t~~G-~~il~nFl~~i~   97 (188)
                      ||||||||+.+|+.| ..||+||+....
T Consensus       178 ~GVQFHPE~~~s~~g~~~Lf~nFl~~~~  205 (742)
T TIGR01823       178 FGVQYHPESCCSELGSGKLVSNFLKLAF  205 (742)
T ss_pred             EEEEeCcccCCCCccHHHHHHHHHHHHH
Confidence            999999999999986 999999997644

This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.

>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase

Probab=99.21  E-value=1.9e-11  Score=99.16  Aligned_cols=76  Identities=32%  Similarity=0.485  Sum_probs=57.8

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeeccccccccccc-------ccee------------c-----ccccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE-------QGKV------------I-----EPLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~-------~s~v------------i-----~pi~Ai~~~~~~i~   71 (188)
                      +.++|+.+.+.+...||....+  ...+.++|+++|.       |++.            +     ++++|+++.++++|
T Consensus        85 a~~~Gg~v~~~~~~~~g~~~~v--~~~~~~~~~~~~~~~~~~~~H~~~v~~~~~~~~~~~la~~~~~~v~a~~~~~~~i~  162 (184)
T cd01743          85 AEAFGGKVVRAPEPMHGKTSEI--HHDGSGLFKGLPQPFTVGRYHSLVVDPDPLPDLLEVTASTEDGVIMALRHRDLPIY  162 (184)
T ss_pred             HHHhCCEEEeCCCCCcCceeEE--EECCCccccCCCCCcEEEeCcEEEEecCCCCceEEEEEeCCCCeEEEEEeCCCCEE
Confidence            3568999999988888876666  3345566666651       2211            1     14789998888999


Q ss_pred             EEeecccccCChhhHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFL   93 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl   93 (188)
                      |+|||||+..++.|.+||+||+
T Consensus       163 gvQfHPE~~~~~~g~~l~~~f~  184 (184)
T cd01743         163 GVQFHPESILTEYGLRLLENFL  184 (184)
T ss_pred             EEeeCCCcCCCcchHHHHHhhC
Confidence            9999999999999999999995

Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]

Probab=99.20  E-value=9.3e-12  Score=108.80  Aligned_cols=101  Identities=45%  Similarity=0.762  Sum_probs=76.5

Q ss_pred             CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151          10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML   89 (188)
Q Consensus        10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il   89 (188)
                      .-+|+|||+|+|.||+.    -|++..|+|||+-.+|-+.+.  +..++|+.-+.                         
T Consensus       122 ~~~LaQGTiYpDvIES~----~g~~~~IKSHHNVGGLP~~m~--lkLvEPLr~Lf-------------------------  170 (315)
T COG0519         122 AEFLAQGTIYPDVIESG----TGKAGTIKSHHNVGGLPEDMK--LKLVEPLRELF-------------------------  170 (315)
T ss_pred             cceEEecccccceeeec----CCCCCccccccccCCCccccc--eeeeHHHHHHh-------------------------
Confidence            66899999999999998    566789999888665444442  44555554322                         


Q ss_pred             HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCchhhhhhhhh
Q psy7151          90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSE  169 (188)
Q Consensus        90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~~~~~~~  169 (188)
                                                 |+.|       +.+|...|++..++.|+|||||+||+|+++.=++.-.+...+
T Consensus       171 ---------------------------KDEV-------R~lg~~LGlp~~iv~RhPFPGPGLaiRilGevt~Ekl~ilR~  216 (315)
T COG0519         171 ---------------------------KDEV-------RELGRELGLPEEIVYRHPFPGPGLAVRILGEVTREKLEILRE  216 (315)
T ss_pred             ---------------------------HHHH-------HHHHHHhCCCHHHhccCCCCCCCeEEEeecccCHHHHHHHHH
Confidence                                       2223       667999999999999999999999999998777666666666


Q ss_pred             hhhHHH
Q psy7151         170 TQVLVK  175 (188)
Q Consensus       170 ~~~~~~  175 (188)
                      .+.|+.
T Consensus       217 Ad~I~~  222 (315)
T COG0519         217 ADAIVE  222 (315)
T ss_pred             HhHHHH
Confidence            666553

>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase

Probab=99.19  E-value=2e-11  Score=98.26  Aligned_cols=74  Identities=38%  Similarity=0.614  Sum_probs=54.2

Q ss_pred             ecCCeEEecCcccCCcceeEEeeecccccccccc-----------------ccceecc-----cccccccccccEEEEee
Q psy7151          18 LRPDLIESASHLASNKADVIKTHHNDSPLIRALR-----------------EQGKVIE-----PLKDFHKDELRLYGLQF   75 (188)
Q Consensus        18 ~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-----------------~~s~vi~-----pi~Ai~~~~~~i~GVQF   75 (188)
                      ++|+.|.+.+.+.+|.....  ......+|+++|                 .+..+++     +++|+++.+.++||+||
T Consensus        86 ~~gg~v~~~~~~~~G~~~v~--~~~~~~l~~~~~~~~~~~~~H~~~v~~l~~~~~~la~~~~~~i~a~~~~~~~~~g~Qf  163 (181)
T cd01742          86 ALGGKVERGDKREYGKAEIE--IDDSSPLFEGLPDEQTVWMSHGDEVVKLPEGFKVIASSDNCPVAAIANEEKKIYGVQF  163 (181)
T ss_pred             hcCCeEEeCCCCcceEEEEE--ecCCChhhcCCCCceEEEcchhhhhhhcCCCcEEEEeCCCCCEEEEEeCCCcEEEEEc
Confidence            67889988888888865542  223444566554                 2222221     47789888779999999


Q ss_pred             cccccCChhhHHHHHHHH
Q psy7151          76 HPEVDLTNEGRTMLKNFL   93 (188)
Q Consensus        76 HPE~~~t~~G~~il~nFl   93 (188)
                      |||+..++.|+.||+||+
T Consensus       164 HPE~~~~~~g~~ll~~f~  181 (181)
T cd01742         164 HPEVTHTEKGKEILKNFL  181 (181)
T ss_pred             CCccccCcChHHHHHhhC
Confidence            999999999999999995

Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]

Probab=99.16  E-value=1.3e-11  Score=107.99  Aligned_cols=63  Identities=24%  Similarity=0.372  Sum_probs=51.0

Q ss_pred             CcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEec--CCchhhhhhhhh
Q psy7151         102 NFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVIC--GEERYIEKDYSE  169 (188)
Q Consensus       102 ~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~--~~~~~~~~~~~~  169 (188)
                      +|+|++|++++++.||++||+++|++   |+||||||+|+|.++++  .+|-++.|  .|++.+|++|.+
T Consensus         1 ~w~~~~~ie~~i~~ir~~vg~~kvi~---alSGGVDSsv~a~L~~~--AiGd~l~cvfVD~GLlR~~E~e   65 (315)
T COG0519           1 MWTMENFIEEAIEEIREQVGDGKVIL---ALSGGVDSSVAAVLAHR--AIGDQLTCVFVDHGLLRKGEAE   65 (315)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCceEEE---EecCCCcHHHHHHHHHH--HhhcceEEEEecCCcccCCcHH
Confidence            69999999999999999999999999   99999999999977765  34444444  455666655554

>PRK13566 anthranilate synthase; Provisional

Probab=99.13  E-value=6.4e-11  Score=115.01  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=62.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccc-------ccceec------------c-----cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGKVI------------E-----PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi------------~-----pi~Ai~~~~~~i~   71 (188)
                      +.++|+.+.+.+.+.||+.+.|.. ..++.||+++|       +|++.+            +     +++|+++.+.++|
T Consensus       612 a~alGG~V~~~~~~~~G~~~~V~v-~~~~~Lf~~lp~~~~v~~~Hs~~v~~~~Lp~~~~vlA~s~dg~V~ai~~~~~pi~  690 (720)
T PRK13566        612 VEAFGGELGQLAYPMHGKPSRIRV-RGPGRLFSGLPEEFTVGRYHSLFADPETLPDELLVTAETEDGVIMAIEHKTLPVA  690 (720)
T ss_pred             HHHcCCEEEECCCCccCCceEEEE-CCCCchhhcCCCCCEEEEecceeEeeccCCCceEEEEEeCCCcEEEEEECCCCEE
Confidence            457899999999999999888854 23446777665       444322            1     3789999888999


Q ss_pred             EEeecccccCC---hhhHHHHHHHHHHh
Q psy7151          72 GLQFHPEVDLT---NEGRTMLKNFLFDV   96 (188)
Q Consensus        72 GVQFHPE~~~t---~~G~~il~nFl~~i   96 (188)
                      |||||||+.+|   +.|.+||+||+..+
T Consensus       691 GVQFHPE~i~t~~~~~G~~ii~nfl~~~  718 (720)
T PRK13566        691 AVQFHPESIMTLGGDVGLRIIENVVRLL  718 (720)
T ss_pred             EEeccCeeCCcCCchhHHHHHHHHHHHh
Confidence            99999999988   56999999999764

>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]

Probab=99.13  E-value=3.7e-11  Score=100.34  Aligned_cols=81  Identities=28%  Similarity=0.484  Sum_probs=61.7

Q ss_pred             eecCCeEEecCcccCCcce-------------------eEEeeeccccccccccccceecc-----cccccccccccEEE
Q psy7151          17 TLRPDLIESASHLASNKAD-------------------VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYG   72 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~-------------------~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~G   72 (188)
                      .++|+.|++++....|.+.                   .|+.+|.|.  |..+|+++.+++     |+.|+.+. +++||
T Consensus        94 ~~lGg~V~~~~~~E~G~~~v~~~~~~~~l~~gl~~~~~~v~~sH~D~--v~~lP~g~~vlA~s~~cp~qa~~~~-~~~~g  170 (198)
T COG0518          94 KALGGKVERGPKREIGWTPVELTEGDDPLFAGLPDLFTTVFMSHGDT--VVELPEGAVVLASSETCPNQAFRYG-KRAYG  170 (198)
T ss_pred             HHhCCEEeccCCCccceEEEEEecCccccccCCccccCccccchhCc--cccCCCCCEEEecCCCChhhheecC-CcEEE
Confidence            4677788777654455332                   244445555  666777776654     68899988 89999


Q ss_pred             EeecccccCChhhHHHHHHHHHHhhCCCC
Q psy7151          73 LQFHPEVDLTNEGRTMLKNFLFDVCGLTG  101 (188)
Q Consensus        73 VQFHPE~~~t~~G~~il~nFl~~i~~~~~  101 (188)
                      +|||||+.+ +.|+++++||...+|++++
T Consensus       171 vQFHpEv~~-~~~~~~l~nf~~~i~~~~~  198 (198)
T COG0518         171 VQFHPEVTH-EYGEALLENFAHEICGEEP  198 (198)
T ss_pred             EeeeeEEeH-HHHHHHHHHhhhhhcccCC
Confidence            999999999 9999999999999998763

>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional

Probab=99.06  E-value=8.1e-11  Score=101.18  Aligned_cols=61  Identities=15%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             eeEEeeeccccccccccccceecc-----ccccccccccc-EEEEeecccccCChhh--HHHHHHHHHHhh
Q psy7151          35 DVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELR-LYGLQFHPEVDLTNEG--RTMLKNFLFDVC   97 (188)
Q Consensus        35 ~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~-i~GVQFHPE~~~t~~G--~~il~nFl~~i~   97 (188)
                      ..|||+|++.  ++.+|+++.+++     .++|+++.+.+ ++|||||||+..++++  +.||+||+....
T Consensus       177 ~~Vns~H~q~--V~~l~~gl~v~A~s~dg~ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~  245 (254)
T PRK11366        177 FWVNSLHGQG--AKVVSPRLRVEARSPDGLVEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQ  245 (254)
T ss_pred             EEeehHHHHH--HhhcccceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHH
Confidence            3588889988  889998888765     48999998776 4999999999998888  899999997553

>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=99.03  E-value=1.3e-10  Score=95.31  Aligned_cols=67  Identities=15%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             eecCCeEEecCcccCCcceeEEeeeccccccccccccceecc-----ccccccccc-ccEEEEeecccccCC--hhhHHH
Q psy7151          17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDE-LRLYGLQFHPEVDLT--NEGRTM   88 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~-~~i~GVQFHPE~~~t--~~G~~i   88 (188)
                      .++|+.|.+.+        .++++|++.  +..+|++..+.+     +++|+++.+ .++||+|||||+..+  +.|++|
T Consensus       115 ~~~Gg~v~~~~--------~v~~~H~~~--v~~~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~~~~~i  184 (189)
T cd01745         115 VALGGTLYQDI--------RVNSLHHQA--IKRLADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDPDSLKL  184 (189)
T ss_pred             HHhCCeEEcCC--------ceechHHHH--HhhcCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCchHhHH
Confidence            46788887665        788889888  788887766654     588999987 799999999999998  899999


Q ss_pred             HHHHH
Q psy7151          89 LKNFL   93 (188)
Q Consensus        89 l~nFl   93 (188)
                      |+||+
T Consensus       185 f~~f~  189 (189)
T cd01745         185 FEAFV  189 (189)
T ss_pred             HHHhC
Confidence            99994

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS)

Probab=99.01  E-value=3.3e-10  Score=93.02  Aligned_cols=72  Identities=24%  Similarity=0.346  Sum_probs=51.3

Q ss_pred             cCCeEEecCc------ccCCcceeEEeeecccccccccc-------ccceeccc--------------ccccccccccEE
Q psy7151          19 RPDLIESASH------LASNKADVIKTHHNDSPLIRALR-------EQGKVIEP--------------LKDFHKDELRLY   71 (188)
Q Consensus        19 ~g~~I~~~~~------~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p--------------i~Ai~~~~~~i~   71 (188)
                      |++.+.+.++      +.+|.....  .+.++.||+++|       +|++.+.+              .++..+..+++|
T Consensus       100 ~~g~v~~~~~~~~~~~~~~G~~~v~--~~~~~~lf~~l~~~~~v~~~Hs~~v~~~~~~~~la~s~~~~~~~~~~~~~~i~  177 (198)
T cd01748         100 IPGKVVRFPASEGLKVPHMGWNQLE--ITKESPLFKGIPDGSYFYFVHSYYAPPDDPDYILATTDYGGKFPAAVEKDNIF  177 (198)
T ss_pred             cceEEEECCCCCCceEEEeccceEE--ECCCChhhhCCCCCCeEEEEeEEEEecCCcceEEEEecCCCeEEEEEEcCCEE
Confidence            7889988775      477887654  355667888876       44444321              112223456899


Q ss_pred             EEeecccccCChhhHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFL   93 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl   93 (188)
                      |+|||||+. ++.|++||+||+
T Consensus       178 GvQFHPE~~-~~~g~~~~~nf~  198 (198)
T cd01748         178 GTQFHPEKS-GKAGLKLLKNFL  198 (198)
T ss_pred             EEECCCccc-cHhHHHHHHhhC
Confidence            999999998 679999999995

Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II

Probab=99.00  E-value=3.1e-10  Score=92.11  Aligned_cols=76  Identities=14%  Similarity=0.251  Sum_probs=55.9

Q ss_pred             eeecCCeEEecCcccCCcceeE-----------Eeeeccccccc--cccccceecc------cccccccccccEEEEeec
Q psy7151          16 GTLRPDLIESASHLASNKADVI-----------KTHHNDSPLIR--ALREQGKVIE------PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V-----------~s~H~~~~Lf~--~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH   76 (188)
                      +.+||+.+.+.+...||+.+.+           +++|++.  ++  .+|.++.+++      .++|+++.+.++||+|||
T Consensus        83 ~~~~Gg~v~~~~~~~~g~~~~v~~~~~~~~~~v~~~H~~~--v~~~~lp~~~~v~a~s~~~~~i~a~~~~~~~i~GvQfH  160 (178)
T cd01744          83 ALALGAKTYKMKFGHRGSNHPVKDLITGRVYITSQNHGYA--VDPDSLPGGLEVTHVNLNDGTVEGIRHKDLPVFSVQFH  160 (178)
T ss_pred             HHHcCCceecCCCCCCCCceeeEEcCCCCcEEEEcCceEE--EcccccCCceEEEEEECCCCcEEEEEECCCCeEEEeeC
Confidence            4578898888776667765443           3346655  43  5777665543      278999988899999999


Q ss_pred             ccccCCh-hhHHHHHHHH
Q psy7151          77 PEVDLTN-EGRTMLKNFL   93 (188)
Q Consensus        77 PE~~~t~-~G~~il~nFl   93 (188)
                      ||+..++ ....||++|+
T Consensus       161 PE~~~~~~~~~~lf~~f~  178 (178)
T cd01744         161 PEASPGPHDTEYLFDEFL  178 (178)
T ss_pred             CCCCCCCCCchHhHhhhC
Confidence            9998875 5678999995

This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is

>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional

Probab=98.97  E-value=7.2e-10  Score=93.06  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=28.4

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      ++|++.  .++||+|||||++ ++.|.+||+||+.+
T Consensus       177 v~a~~~--~~i~GvQFHPE~s-~~~G~~il~nfl~~  209 (210)
T CHL00188        177 VAAIEY--DNIFAMQFHPEKS-GEFGLWLLREFMKK  209 (210)
T ss_pred             EEEEec--CCEEEEecCCccc-cHhHHHHHHHHHhh
Confidence            456664  5999999999999 99999999999964

>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed

Probab=98.86  E-value=2.4e-09  Score=96.72  Aligned_cols=78  Identities=13%  Similarity=0.198  Sum_probs=57.9

Q ss_pred             eeecCCeEEecCcccCCcceeEE----------e-eeccccccc--cccccceecc------cccccccccccEEEEeec
Q psy7151          16 GTLRPDLIESASHLASNKADVIK----------T-HHNDSPLIR--ALREQGKVIE------PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~----------s-~H~~~~Lf~--~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH   76 (188)
                      +.++|+.+.+++...||..+.++          + +|+..  ++  .+|.++.+.+      .++|+++.++|+||||||
T Consensus       262 a~a~Gg~v~kl~~gh~G~~~pv~~~~~~~~~its~~H~~~--V~~~~lp~~l~v~a~~~~Dg~iegi~~~~~pi~gVQfH  339 (360)
T PRK12564        262 ALALGAKTYKMKFGHRGANHPVKDLETGKVEITSQNHGFA--VDEDSLPANLEVTHVNLNDGTVEGLRHKDLPAFSVQYH  339 (360)
T ss_pred             HHHhCCcEeccCCCccCCceeeEECCCCcEEEEecCcccE--EcccccCCceEEEEEeCCCCcEEEEEECCCCEEEEEeC
Confidence            46789999988877777655442          2 35544  43  5666554432      378999999999999999


Q ss_pred             ccccCChh-hHHHHHHHHHH
Q psy7151          77 PEVDLTNE-GRTMLKNFLFD   95 (188)
Q Consensus        77 PE~~~t~~-G~~il~nFl~~   95 (188)
                      ||+..++. +..||++|+..
T Consensus       340 PE~~~gp~d~~~lF~~F~~~  359 (360)
T PRK12564        340 PEASPGPHDSAYLFDEFVEL  359 (360)
T ss_pred             CcCCCCCCCHHHHHHHHHHh
Confidence            99988765 88999999964

>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []

Probab=98.85  E-value=2.1e-09  Score=87.00  Aligned_cols=79  Identities=24%  Similarity=0.425  Sum_probs=52.8

Q ss_pred             eeecCCeEEecC-cccCCcceeEEeeeccccccccc--------------------cccceecc------cccccccccc
Q psy7151          16 GTLRPDLIESAS-HLASNKADVIKTHHNDSPLIRAL--------------------REQGKVIE------PLKDFHKDEL   68 (188)
Q Consensus        16 g~~~g~~I~~~~-~~~HGk~~~V~s~H~~~~Lf~~l--------------------p~~s~vi~------pi~Ai~~~~~   68 (188)
                      +.++|+.|.+.+ .+.+|....+... ....+|.++                    |.++.+++      +++|+.+.+.
T Consensus        86 a~~~G~~v~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~  164 (192)
T PF00117_consen   86 AHALGGKVVPSPEKPHHGGNIPISET-PEDPLFYGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDN  164 (192)
T ss_dssp             HHHTTHEEEEEESEEEEEEEEEEEEE-EEHGGGTTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTT
T ss_pred             HHhcCCcccccccccccccccccccc-cccccccccccccccccccceeeeccccccccccccccccccccccccccccc
Confidence            346777777776 5666655555221 112334444                    43333321      3667888777


Q ss_pred             cEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          69 RLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        69 ~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      ++||+|||||...+..|..+|+||+.+
T Consensus       165 ~i~g~QfHPE~~~~~~~~~~l~nf~~~  191 (192)
T PF00117_consen  165 PIYGVQFHPEFSSSPGGPQLLKNFFLK  191 (192)
T ss_dssp             SEEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred             EEEEEecCCcCCCCCCcchhhhheeEe
Confidence            899999999999999999999999854

The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....

>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.83  E-value=4.1e-09  Score=86.81  Aligned_cols=73  Identities=22%  Similarity=0.260  Sum_probs=46.9

Q ss_pred             cCCeEEecCc-----ccCCcceeEEeeecccccccccc-------ccceeccc--------------ccccccccccEEE
Q psy7151          19 RPDLIESASH-----LASNKADVIKTHHNDSPLIRALR-------EQGKVIEP--------------LKDFHKDELRLYG   72 (188)
Q Consensus        19 ~g~~I~~~~~-----~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p--------------i~Ai~~~~~~i~G   72 (188)
                      +|+.+.+.+.     +.+|.....  .+.++.||+++|       +|++.+.+              ..+.....+++||
T Consensus       100 l~~~v~~~~~~~~~~~~~G~~~v~--~~~~~~lf~~l~~~~~~~~~Hs~~v~~~~~~~~lA~s~~~~~~~~~~~~~~i~G  177 (199)
T PRK13181        100 IPGDVKRFRSEPLKVPQMGWNSVK--PLKESPLFKGIEEGSYFYFVHSYYVPCEDPEDVLATTEYGVPFCSAVAKDNIYA  177 (199)
T ss_pred             EEEEEEEcCCCCCCCCccCccccc--cCCCChhHcCCCCCCEEEEeCeeEeccCCcccEEEEEcCCCEEEEEEECCCEEE
Confidence            6677887653     466765443  234566787776       33333211              1111122468999


Q ss_pred             EeecccccCChhhHHHHHHHHH
Q psy7151          73 LQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        73 VQFHPE~~~t~~G~~il~nFl~   94 (188)
                      +|||||+. ++.|+.||+||+.
T Consensus       178 vQFHPE~~-~~~g~~ll~nfl~  198 (199)
T PRK13181        178 VQFHPEKS-GKAGLKLLKNFAE  198 (199)
T ss_pred             EECCCccC-CHHHHHHHHHHHh
Confidence            99999988 6899999999985

>COG2071 Predicted glutamine amidotransferases [General function prediction only]

Probab=98.80  E-value=2.9e-09  Score=91.44  Aligned_cols=65  Identities=15%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             cCCcc-eeEEeeeccccccccccccceecc-----ccccccccc-ccEEEEeecccccCCh--hhHHHHHHHHHHh
Q psy7151          30 ASNKA-DVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDE-LRLYGLQFHPEVDLTN--EGRTMLKNFLFDV   96 (188)
Q Consensus        30 ~HGk~-~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~-~~i~GVQFHPE~~~t~--~G~~il~nFl~~i   96 (188)
                      ..|+. ..|||+|+|+  ++.|++++.+.+     -++|++++. .++.|||||||.....  .-++||+.|....
T Consensus       165 i~g~~~~~VNS~HhQa--Ik~La~~L~V~A~a~DG~VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~  238 (243)
T COG2071         165 ILGESEFMVNSFHHQA--IKKLAPGLVVEARAPDGTVEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNAC  238 (243)
T ss_pred             hcCccceeecchHHHH--HHHhCCCcEEEEECCCCcEEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHH
Confidence            35655 7999999999  999999998876     389999985 6899999999998654  4599999998754

>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.80  E-value=7.8e-09  Score=86.84  Aligned_cols=29  Identities=34%  Similarity=0.655  Sum_probs=26.0

Q ss_pred             ccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      .+.++||+|||||+.+ ++|.+||+||+..
T Consensus       181 ~~~~i~GvQFHPE~s~-~~G~~iL~nfl~~  209 (210)
T PRK14004        181 EKENIFGTQFHPEKSH-THGLKLLENFIEF  209 (210)
T ss_pred             ecCCEEEEeCCcccCc-hhHHHHHHHHHhh
Confidence            3578999999999999 6999999999964

>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed

Probab=98.79  E-value=7.8e-09  Score=93.25  Aligned_cols=79  Identities=14%  Similarity=0.155  Sum_probs=56.2

Q ss_pred             eeecCCeEEecCcccCCcceeEEe-----------eeccccccc--ccccc-ceecc------cccccccccccEEEEee
Q psy7151          16 GTLRPDLIESASHLASNKADVIKT-----------HHNDSPLIR--ALREQ-GKVIE------PLKDFHKDELRLYGLQF   75 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s-----------~H~~~~Lf~--~lp~~-s~vi~------pi~Ai~~~~~~i~GVQF   75 (188)
                      +.++|+.+.+++...||..+.|+.           +|+..  ++  .++.. ..+.+      .++|+++.++|+|||||
T Consensus       251 a~a~Gg~v~kl~~gh~G~~hpV~~~~~~~~~~ts~~H~~a--V~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~pi~gVQf  328 (354)
T PRK12838        251 ALALGADTEKLPFGHRGANHPVIDLTTGRVWMTSQNHGYV--VDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKPVLSVQF  328 (354)
T ss_pred             HHHhCCEEecCCCCccCCceEEEECCCCeEEEeccchheE--ecccccCCCCcEEEEEECCCCeEEEEEECCCCEEEEEe
Confidence            458899999988778888776632           23332  21  13322 22221      27899999999999999


Q ss_pred             cccccCCh-hhHHHHHHHHHHh
Q psy7151          76 HPEVDLTN-EGRTMLKNFLFDV   96 (188)
Q Consensus        76 HPE~~~t~-~G~~il~nFl~~i   96 (188)
                      |||+..++ ++..||++|++.+
T Consensus       329 HPE~~~gp~d~~~lF~~F~~~~  350 (354)
T PRK12838        329 HPEAHPGPHDAEYIFDEFLEMM  350 (354)
T ss_pred             CCCCCCCCccHHHHHHHHHHHH
Confidence            99998765 5889999999765

>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit

Probab=98.79  E-value=8.4e-09  Score=85.08  Aligned_cols=73  Identities=21%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             cCCeEEecC---cccCCcceeEEeeecccccccccc-------ccceeccc-------------ccccccccccEEEEee
Q psy7151          19 RPDLIESAS---HLASNKADVIKTHHNDSPLIRALR-------EQGKVIEP-------------LKDFHKDELRLYGLQF   75 (188)
Q Consensus        19 ~g~~I~~~~---~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~p-------------i~Ai~~~~~~i~GVQF   75 (188)
                      +|+.+.+.+   .+.+|.....  .+.+++||+++|       +|++.+.+             ..+.....+++||+||
T Consensus       100 ~~~~v~~~~~~~~~~~g~~~~~--~~~~~~l~~~l~~~~~v~~~Hs~~v~~~~~~~~a~~~~g~~~~~~~~~~~i~GvQF  177 (196)
T TIGR01855       100 IKGNVVKLEARKVPHMGWNEVH--PVKESPLLNGIDEGAYFYFVHSYYAVCEEEAVLAYADYGEKFPAAVQKGNIFGTQF  177 (196)
T ss_pred             eeEEEEECCCCCCCcccCeeee--eCCCChHHhCCCCCCEEEEECeeEecCCCCcEEEEEcCCcEEEEEEecCCEEEEEC
Confidence            678888775   3355544332  244556777766       44443321             1112334468999999


Q ss_pred             cccccCChhhHHHHHHHHH
Q psy7151          76 HPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        76 HPE~~~t~~G~~il~nFl~   94 (188)
                      |||+. ++.|.+|++||++
T Consensus       178 HPE~~-~~~g~~ll~~f~~  195 (196)
T TIGR01855       178 HPEKS-GKTGLKLLENFLE  195 (196)
T ss_pred             CCccC-cHhHHHHHHHHHh
Confidence            99988 5899999999985

This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.

>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.78  E-value=8.1e-09  Score=86.22  Aligned_cols=28  Identities=39%  Similarity=0.652  Sum_probs=25.3

Q ss_pred             cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      ..++||||||||++ ++.|.+||+||+..
T Consensus       180 ~~~i~GvQFHPE~s-~~~G~~ll~nfl~~  207 (209)
T PRK13146        180 RDNLFATQFHPEKS-QDAGLALLRNFLAW  207 (209)
T ss_pred             cCCEEEEEcCCccc-HHHHHHHHHHHHhh
Confidence            46899999999998 78999999999864

>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.77  E-value=1.2e-08  Score=84.42  Aligned_cols=72  Identities=18%  Similarity=0.304  Sum_probs=49.4

Q ss_pred             cCCeEEecC-----cccCCcceeEEeeecccccccccc-------ccceecc----------c-----ccccccccccEE
Q psy7151          19 RPDLIESAS-----HLASNKADVIKTHHNDSPLIRALR-------EQGKVIE----------P-----LKDFHKDELRLY   71 (188)
Q Consensus        19 ~g~~I~~~~-----~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~----------p-----i~Ai~~~~~~i~   71 (188)
                      +++.+.+.+     .+.|+....|+. ..++.||+++|       +||+.+.          +     +++++  ..++|
T Consensus       102 ~~g~v~~~~~~~~~~~~~~g~~~v~~-~~~~~l~~~l~~~~~~~~vHS~~v~~~~~~v~a~~~~g~~~~~a~~--~~~i~  178 (201)
T PRK13152        102 IEGEVVKFEEDLNLKIPHMGWNELEI-LKQSPLYQGIPEKSDFYFVHSFYVKCKDEFVSAKAQYGHKFVASLQ--KDNIF  178 (201)
T ss_pred             ccEEEEECCCCCCCcCCccCeEEEEE-CCCChhhhCCCCCCeEEEEcccEeecCCCcEEEEECCCCEEEEEEe--cCCEE
Confidence            457777654     245887888853 45667888876       3343331          1     22444  46899


Q ss_pred             EEeecccccCChhhHHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      |+|||||++ ++.|.+||+||++
T Consensus       179 GvQFHPE~~-~~~g~~ll~~Fl~  200 (201)
T PRK13152        179 ATQFHPEKS-QNLGLKLLENFAR  200 (201)
T ss_pred             EEeCCCeec-ChhhHHHHHHHHh
Confidence            999999998 5699999999985

>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.72  E-value=2e-08  Score=82.95  Aligned_cols=74  Identities=20%  Similarity=0.329  Sum_probs=47.9

Q ss_pred             cCCeEEecCc-----ccCCcceeEEeeecccccccccc-------ccceecc---------------cccccccccccEE
Q psy7151          19 RPDLIESASH-----LASNKADVIKTHHNDSPLIRALR-------EQGKVIE---------------PLKDFHKDELRLY   71 (188)
Q Consensus        19 ~g~~I~~~~~-----~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~vi~---------------pi~Ai~~~~~~i~   71 (188)
                      +++.+.+.+.     +.|.....+.. +.++.||+.+|       +|++.+.               +++++.. ..++|
T Consensus       101 l~g~v~~~~~~~~~~~~~~g~~~i~~-~~~~~l~~~l~~~~~v~~~Hs~~v~~~~~~~v~a~~~~~~~~~a~~~-~~~i~  178 (205)
T PRK13141        101 LPGRVRRFPPEEGLKVPHMGWNQLEL-KKESPLLKGIPDGAYVYFVHSYYADPCDEEYVAATTDYGVEFPAAVG-KDNVF  178 (205)
T ss_pred             EEEEEEEcCCCCCCcccEecCcccee-CCCChhhhCCCCCCEEEEECeeEeccCCcCeEEEEEeCCcEEEEEEe-cCCEE
Confidence            6778887752     23433334432 34666787776       3333321               2445543 46899


Q ss_pred             EEeecccccCChhhHHHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      |||||||+.. +.|++||+||+..
T Consensus       179 GvQfHPE~~~-~~g~~l~~~fl~~  201 (205)
T PRK13141        179 GAQFHPEKSG-DVGLKILKNFVEM  201 (205)
T ss_pred             EEeCCCccch-HHHHHHHHHHHHH
Confidence            9999999975 7999999999864

>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit

Probab=98.70  E-value=1.9e-08  Score=90.87  Aligned_cols=79  Identities=13%  Similarity=0.214  Sum_probs=56.1

Q ss_pred             eeecCCeEEecCcccCCcceeEE----------e-eeccccccc--ccc-ccceecc------cccccccccccEEEEee
Q psy7151          16 GTLRPDLIESASHLASNKADVIK----------T-HHNDSPLIR--ALR-EQGKVIE------PLKDFHKDELRLYGLQF   75 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~----------s-~H~~~~Lf~--~lp-~~s~vi~------pi~Ai~~~~~~i~GVQF   75 (188)
                      +.+||+.+.+++...||..+.|+          + +|+..  ++  .+| .++.+.+      .++|++|+++|+|||||
T Consensus       257 a~a~Gg~v~kl~~gh~G~nhpV~~~~~~~v~itsqnH~~a--V~~~~l~~~~l~vta~~~nDg~Vegi~h~~~pi~gVQf  334 (358)
T TIGR01368       257 ALAFGAKTYKMKFGHRGGNHPVKDLITGRVEITSQNHGYA--VDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLPVFSVQY  334 (358)
T ss_pred             HHHhCCceeccCcCcCCCceeeEECCCCcEEEeecCCCcE--EcccccCCCceEEEEEECCCCcEEEEEECCCCEEEEEE
Confidence            46789988888777777665542          1 25444  32  344 3344432      28899999999999999


Q ss_pred             cccccCChh-hHHHHHHHHHHh
Q psy7151          76 HPEVDLTNE-GRTMLKNFLFDV   96 (188)
Q Consensus        76 HPE~~~t~~-G~~il~nFl~~i   96 (188)
                      |||+...+. ...||++|+..+
T Consensus       335 HPE~~~gp~d~~~lF~~F~~~~  356 (358)
T TIGR01368       335 HPEASPGPHDTEYLFDEFIDLI  356 (358)
T ss_pred             CCCCCCCCCChHHHHHHHHHHh
Confidence            999987764 577999999654

This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.

>PRK00768 nadE NAD synthetase; Reviewed

Probab=98.61  E-value=2.1e-08  Score=87.43  Aligned_cols=69  Identities=13%  Similarity=0.210  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh---cCCC-CC---------ceE
Q psy7151          86 RTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR---HPFP-GP---------GLA  152 (188)
Q Consensus        86 ~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~---~~~p-~~---------~L~  152 (188)
                      ++|++.|     +..++++++..++.++.|||+++...+..+.++|+|||+||+|+|.   .+++ .+         .++
T Consensus         4 ~~~~~~~-----~~~~~~~~~~~~~~i~~~L~~~l~~~g~~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~   78 (268)
T PRK00768          4 QEIIAEL-----GVKPTIDPEEEIRRRVDFLKDYLKKSGLKSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIA   78 (268)
T ss_pred             HHHHHHH-----CCCCCCCHHHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEE
Confidence            4555555     4566789999999999999999998888888889999999999994   4443 33         799


Q ss_pred             EEEecCC
Q psy7151         153 IRVICGE  159 (188)
Q Consensus       153 v~~~~~~  159 (188)
                      +.||..+
T Consensus        79 l~mP~~~   85 (268)
T PRK00768         79 VRLPYGV   85 (268)
T ss_pred             EECCCCC
Confidence            9999643

>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.60  E-value=6.8e-08  Score=79.86  Aligned_cols=27  Identities=44%  Similarity=0.789  Sum_probs=24.3

Q ss_pred             cccEEEEeecccccCChhhHHHHHHHHH
Q psy7151          67 ELRLYGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      ..++||+|||||+. ++.|.+||+||++
T Consensus       169 ~~~i~G~QFHPE~~-~~~G~~~l~nfl~  195 (196)
T PRK13170        169 KDNFFGVQFHPERS-GAAGAQLLKNFLE  195 (196)
T ss_pred             cCCEEEEECCCCCc-ccccHHHHHHHhh
Confidence            46899999999999 5899999999984

>PTZ00323 NAD+ synthase; Provisional

Probab=98.57  E-value=5e-08  Score=86.07  Aligned_cols=64  Identities=9%  Similarity=0.004  Sum_probs=47.8

Q ss_pred             CCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhc---CC-C-----CCceEEEEecCCch
Q psy7151          98 GLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRH---PF-P-----GPGLAIRVICGEER  161 (188)
Q Consensus        98 ~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~---~~-p-----~~~L~v~~~~~~~~  161 (188)
                      +..++|+++++++..+.+||+++...+.-+.++|+||||||+|+|..   ++ +     ...+|+.+|..+++
T Consensus        19 ~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~   91 (294)
T PTZ00323         19 RRKRAFNPAAWIEKKCAKLNEYMRRCGLKGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSA   91 (294)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCH
Confidence            56899999999999999999987653333344499999999999932   22 2     23778888865443

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6

Probab=98.54  E-value=2.2e-08  Score=85.74  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh----hcCCCCCceEEEEec
Q psy7151         108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM----RHPFPGPGLAIRVIC  157 (188)
Q Consensus       108 ~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva----~~~~p~~~L~v~~~~  157 (188)
                      +++.++.|||+++.+.+..+.++|+||||||+|+|    ++..|++.+|+.||.
T Consensus         1 ~~~~l~~~L~~~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~   54 (242)
T PF02540_consen    1 VIEALVDFLRDYVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPS   54 (242)
T ss_dssp             -HHHHHHHHHHHHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEES
T ss_pred             CHHHHHHHHHHHHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhcccccccccc
Confidence            47889999999988554444445999999999999    334478999999994

3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....

>COG0171 NadE NAD synthase [Coenzyme metabolism]

Probab=98.48  E-value=9e-08  Score=83.55  Aligned_cols=69  Identities=19%  Similarity=0.230  Sum_probs=53.4

Q ss_pred             cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh----cCC----CCCceEEEEecCC-chhhhhhhhhhh
Q psy7151         103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR----HPF----PGPGLAIRVICGE-ERYIEKDYSETQ  171 (188)
Q Consensus       103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~----~~~----p~~~L~v~~~~~~-~~~~~~~~~~~~  171 (188)
                      -+.++.++.++.|||+++.+.+..+.|+|+|||+||++++.    +..    +.+.++++||... ...+.+|-.++.
T Consensus         3 ~d~~~~~~~~~~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~   80 (268)
T COG0171           3 IDLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLA   80 (268)
T ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHH
Confidence            45778899999999999998877777789999999999982    332    3569999999775 555555554433

>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.46  E-value=3.1e-07  Score=76.00  Aligned_cols=28  Identities=36%  Similarity=0.616  Sum_probs=24.5

Q ss_pred             cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      ..++||+|||||+. ++.|.+||+||+..
T Consensus       170 ~~~~~gvQfHPE~~-~~~g~~i~~~f~~~  197 (200)
T PRK13143        170 NDNVFGTQFHPEKS-GETGLKILENFVEL  197 (200)
T ss_pred             cCCEEEEeCCCccc-hHHHHHHHHHHHHH
Confidence            35999999999997 57999999999864

>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional

Probab=98.45  E-value=1.8e-07  Score=85.29  Aligned_cols=37  Identities=14%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             ccccccccccEEEEeecccccCChhh-HHHHHHHHHHh
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEG-RTMLKNFLFDV   96 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G-~~il~nFl~~i   96 (188)
                      ++|++|.++|+||||||||+..++.+ ..||++|+..+
T Consensus       337 vegi~h~~~pi~gVQFHPE~~~gp~d~~~lf~~Fv~~~  374 (382)
T CHL00197        337 VAGISHSPKPYFSVQYHPEASPGPHDADYLFEYFIEII  374 (382)
T ss_pred             EEEEEECCCCcEEEeeCCCCCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999987775 56999999754

>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]

Probab=98.42  E-value=4.1e-07  Score=76.46  Aligned_cols=75  Identities=24%  Similarity=0.354  Sum_probs=47.7

Q ss_pred             ecCCeEEecCcc----cCCcceeEEeeeccccccccccc-------cceeccc----------------ccccccccccE
Q psy7151          18 LRPDLIESASHL----ASNKADVIKTHHNDSPLIRALRE-------QGKVIEP----------------LKDFHKDELRL   70 (188)
Q Consensus        18 ~~g~~I~~~~~~----~HGk~~~V~s~H~~~~Lf~~lp~-------~s~vi~p----------------i~Ai~~~~~~i   70 (188)
                      .+++.++|.+..    -|=--.++... .++.||+++++       ||+.+.|                .+|+.+  .++
T Consensus       102 ~i~G~V~r~~~~~~kvPHMGWN~l~~~-~~~~l~~gi~~~~~~YFVHSY~~~~~~~~~v~~~~~YG~~f~AaV~k--~N~  178 (204)
T COG0118         102 LIPGKVVRFPAEDLKVPHMGWNQVEFV-RGHPLFKGIPDGAYFYFVHSYYVPPGNPETVVATTDYGEPFPAAVAK--DNV  178 (204)
T ss_pred             eecceEEEcCCCCCCCCccccceeecc-CCChhhcCCCCCCEEEEEEEEeecCCCCceEEEeccCCCeeEEEEEe--CCE
Confidence            355666666532    23222333222 46789999986       3444331                234543  499


Q ss_pred             EEEeecccccCChhhHHHHHHHHHHh
Q psy7151          71 YGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        71 ~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      +|+|||||++. ..|.+||+||+..+
T Consensus       179 ~g~QFHPEKSg-~~Gl~lL~NFl~~~  203 (204)
T COG0118         179 FGTQFHPEKSG-KAGLKLLKNFLEWI  203 (204)
T ss_pred             EEEecCcccch-HHHHHHHHHHHhhc
Confidence            99999999974 68999999999653

>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I

Probab=98.39  E-value=1.9e-07  Score=78.96  Aligned_cols=36  Identities=14%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             ccccccccccEEEEeeccccc-----CChhhHHHHHHHHHH
Q psy7151          60 LKDFHKDELRLYGLQFHPEVD-----LTNEGRTMLKNFLFD   95 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~-----~t~~G~~il~nFl~~   95 (188)
                      ++++.+.+.+++|+|||||+.     +|++|+.||+||+..
T Consensus       186 i~~i~~~~~~~~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~  226 (227)
T TIGR01737       186 IAGIVNERGNVLGMMPHPERASEKLLGGDDGLKLFESLVEW  226 (227)
T ss_pred             HcccCCCCCCEEEEecCchhhcccccCCcccHHHHHHHHhh
Confidence            789999999999999999999     799999999999864

In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.

>PRK00919 GMP synthase subunit B; Validated

Probab=98.27  E-value=5e-07  Score=80.19  Aligned_cols=42  Identities=21%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCC
Q psy7151         103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFP  147 (188)
Q Consensus       103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p  147 (188)
                      ++|++|+++.++.||++++++++++   |+|||+||++++..+..
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~~kVlV---a~SGGVDSsvla~la~~   43 (307)
T PRK00919          2 VDPEKFIEEAIEEIREEIGDGKAII---ALSGGVDSSVAAVLAHR   43 (307)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCEEE---EecCCHHHHHHHHHHHH
Confidence            5799999999999999999999999   99999999999965543

>PLN02347 GMP synthetase

Probab=98.25  E-value=6.6e-07  Score=84.73  Aligned_cols=93  Identities=49%  Similarity=0.760  Sum_probs=65.6

Q ss_pred             CCCCCeeeEeeeecCCeEEecCcccC--CcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCCh
Q psy7151           6 LDPNQTLLCQGTLRPDLIESASHLAS--NKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTN   83 (188)
Q Consensus         6 ~~~~~~~~~~g~~~g~~I~~~~~~~H--Gk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~   83 (188)
                      ++.+..+++|||.|+|.+++...|-.  +.++.|+|||+..+|-+..-  +.++.|+.-+.+.+                
T Consensus       332 ~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~~~~~--~~ii~PL~~l~K~e----------------  393 (536)
T PLN02347        332 LGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLPKDMK--LKLIEPLKLLFKDE----------------  393 (536)
T ss_pred             hCCCCcEEccCCcccccccccCCCCCccccccceeeecccccChHHHH--CccccchhhCcHHH----------------
Confidence            34455799999999999997655533  34889999887654433322  34566665433211                


Q ss_pred             hhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCC
Q psy7151          84 EGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE  159 (188)
Q Consensus        84 ~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~  159 (188)
                                                      +           +.+|...|++..++.++|||+|+|++|+.|..
T Consensus       394 --------------------------------V-----------R~la~~lgl~~~~~~~~p~p~p~La~Ri~g~~  426 (536)
T PLN02347        394 --------------------------------V-----------RKLGRLLGVPEAFLKRHPFPGPGLAVRVLGDV  426 (536)
T ss_pred             --------------------------------H-----------HHHHHHcCCCHHHhcCCCcCCCCEEeeeCCcc
Confidence                                            1           44466778999999999999999999997654

>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.25  E-value=5.9e-07  Score=75.51  Aligned_cols=44  Identities=23%  Similarity=0.463  Sum_probs=35.8

Q ss_pred             cceeEEeeeccccccccccccceecc-----cccccccccc--cEEEEeeccc
Q psy7151          33 KADVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDEL--RLYGLQFHPE   78 (188)
Q Consensus        33 k~~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~--~i~GVQFHPE   78 (188)
                      ....|||+|+++  ++.++.++.+++     -++|++..+.  +++|||||||
T Consensus       167 ~~~~vns~Hhq~--v~~l~~~l~v~A~s~Dg~iEaie~~~~~~~~~GvQwHPE  217 (217)
T PF07722_consen  167 EEIEVNSFHHQA--VKPLGEGLRVTARSPDGVIEAIESPEHKYPILGVQWHPE  217 (217)
T ss_dssp             CTEEEEEEECEE--ECCHHCCEEEEEEECTSSEEEEEECCESS-EEEESS-CC
T ss_pred             Ccceeecchhhh--hhccCCCceEEEEecCCcEEEEEEcCCCCCEEEEEeCCC
Confidence            456899999999  999999988876     2788888873  6999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.

>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain

Probab=98.23  E-value=1e-06  Score=71.37  Aligned_cols=47  Identities=36%  Similarity=0.641  Sum_probs=32.6

Q ss_pred             EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL   93 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl   93 (188)
                      ++.+|++.  +..+|.+..+++     +++|+... .++||+|||||       .+|++||+
T Consensus       137 v~~~H~~~--v~~lp~~~~~la~~~~~~v~~~~~~-~~~~g~QfHPE-------~~~~~~f~  188 (188)
T cd01741         137 VFHWHGDT--VVELPPGAVLLASSEACPNQAFRYG-DRALGLQFHPE-------ERLLRNFL  188 (188)
T ss_pred             EEEEeccC--hhhCCCCCEEeecCCCCCcceEEec-CCEEEEccCch-------HHHHhhhC
Confidence            33345444  455565554443     47777765 69999999999       89999984

This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine

>PRK13525 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.20  E-value=2.4e-06  Score=70.32  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=40.2

Q ss_pred             ceeEEeeeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          34 ADVIKTHHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        34 ~~~V~s~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      ...++..|++.  +..+|++..+.+    ...++..  .++||+|||||....   ..||+||+..
T Consensus       128 ~~~~~~~H~d~--v~~lp~~~~vlA~~~~~~~~~~~--~~~~g~QfHPE~~~~---~~~~~~f~~~  186 (189)
T PRK13525        128 PFPAVFIRAPY--IEEVGPGVEVLATVGGRIVAVRQ--GNILATSFHPELTDD---TRVHRYFLEM  186 (189)
T ss_pred             CeEEEEEeCce--eeccCCCcEEEEEcCCEEEEEEe--CCEEEEEeCCccCCC---chHHHHHHHH
Confidence            45566668777  888898876654    1334443  589999999999754   7999999754

>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)

Probab=98.20  E-value=1e-06  Score=81.21  Aligned_cols=67  Identities=16%  Similarity=0.167  Sum_probs=47.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeeccccc-----------c--ccccccceecc------cccccccccccEEEEeec
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPL-----------I--RALREQGKVIE------PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~L-----------f--~~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH   76 (188)
                      +.++|+.+.+++...||..+.|+  +...+.           +  ..+|.+..+..      .++|+++.++++||||||
T Consensus       324 a~AlGGkv~K~~~Gh~G~n~pV~--~~~~~~v~itsqnHg~aVd~~sLp~~~~vt~~nlnDgtvegi~~~~~pi~gVQFH  401 (415)
T PLN02771        324 GQALGGKTFKMKFGHHGGNHPVR--NNRTGRVEISAQNHNYAVDPASLPEGVEVTHVNLNDGSCAGLAFPALNVMSLQYH  401 (415)
T ss_pred             HHhcCCeEEECCCCcccceEEEE--ECCCCCEEEEecCHHHhhccccCCCceEEEEEeCCCCcEEEEEECCCCEEEEEcC
Confidence            56889999999999999888773  222111           1  24444433322      378999999999999999


Q ss_pred             ccccCChh
Q psy7151          77 PEVDLTNE   84 (188)
Q Consensus        77 PE~~~t~~   84 (188)
                      ||+...+.
T Consensus       402 PEa~pgp~  409 (415)
T PLN02771        402 PEASPGPH  409 (415)
T ss_pred             CCCCCCCC
Confidence            99986654

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.13  E-value=3.9e-06  Score=79.62  Aligned_cols=36  Identities=28%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHHhhC
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG   98 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~   98 (188)
                      ++|+++  .++||+|||||+.. +.|..||+||+..+|.
T Consensus       177 IaAI~~--gnI~GVQFHPE~s~-~~G~~L~~nFl~~~~~  212 (538)
T PLN02617        177 IASVRK--GNVHAVQFHPEKSG-ATGLSILRRFLEPKSS  212 (538)
T ss_pred             EEEEEe--CCEEEEEcCCccCc-hhHHHHHHHHHHhhhh
Confidence            456665  48999999999987 7999999999998885

>PRK13527 glutamine amidotransferase subunit PdxT; Provisional

Probab=98.11  E-value=4.1e-06  Score=69.15  Aligned_cols=50  Identities=18%  Similarity=0.264  Sum_probs=34.2

Q ss_pred             eeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          40 HHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        40 ~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      +|++.  +..+|++..+.+    ..+|++  ..++||+|||||....   ..|++||+..+
T Consensus       144 ~H~~~--v~~lp~~~~~la~~~~~~~a~~--~~~~~g~QfHPE~~~~---~~l~~~f~~~~  197 (200)
T PRK13527        144 IRAPA--ITKVGGDVEVLAKLDDRIVAVE--QGNVLATAFHPELTDD---TRIHEYFLKKV  197 (200)
T ss_pred             Ecccc--ccccCCCeEEEEEECCEEEEEE--ECCEEEEEeCCCCCCC---CHHHHHHHHHH
Confidence            45454  556666655543    133554  3589999999997644   89999999764

>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase

Probab=98.08  E-value=1.9e-06  Score=73.62  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             eeEEeeecccc---ccccc-cccceecc------cccccccccccEE-EEeecccccCCh-hhHHHHHHHH
Q psy7151          35 DVIKTHHNDSP---LIRAL-REQGKVIE------PLKDFHKDELRLY-GLQFHPEVDLTN-EGRTMLKNFL   93 (188)
Q Consensus        35 ~~V~s~H~~~~---Lf~~l-p~~s~vi~------pi~Ai~~~~~~i~-GVQFHPE~~~t~-~G~~il~nFl   93 (188)
                      ..+|++|++.-   -++.+ ..++.+++      .++|++.++.++| |||||||....+ ....||++|+
T Consensus       165 ~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~~lF~~fv  235 (235)
T cd01746         165 VEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPHPLFVGFV  235 (235)
T ss_pred             EEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCccHHHHHhC
Confidence            47888888750   12333 45555543      3789998888877 999999987543 3577888884

Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)

Probab=98.07  E-value=2e-06  Score=73.26  Aligned_cols=56  Identities=16%  Similarity=0.173  Sum_probs=42.2

Q ss_pred             ccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh---cCCC-CCceEEEEecCC
Q psy7151         104 TLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR---HPFP-GPGLAIRVICGE  159 (188)
Q Consensus       104 ~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~---~~~p-~~~L~v~~~~~~  159 (188)
                      +.+.+++.++.|||+++...+.-..++|+|||+||++++.   .+++ .+.+++.||...
T Consensus         2 ~~~~~~~~l~~~l~~~~~~~~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~   61 (248)
T cd00553           2 DLEEIINALVLFLRDYLRKSGFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRY   61 (248)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCC
Confidence            3567889999999999975433334449999999999983   3343 789999998653

The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .

>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional

Probab=98.06  E-value=2.8e-06  Score=70.81  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=25.0

Q ss_pred             cccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          67 ELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        67 ~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +.++||+|||||.++ +.|.+||+||++.
T Consensus       160 ~~n~~g~QFHPEkS~-~~G~~ll~nf~~~  187 (192)
T PRK13142        160 FNNYIGIQFHPEKSG-TYGLQILRQAIQG  187 (192)
T ss_pred             cCCEEEEecCcccCc-HhHHHHHHHHHhc
Confidence            369999999999976 8999999999864

>PRK13980 NAD synthetase; Provisional

Probab=98.03  E-value=4.5e-06  Score=71.99  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=43.2

Q ss_pred             cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC---C-CCCceEEEEecC
Q psy7151         103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP---F-PGPGLAIRVICG  158 (188)
Q Consensus       103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~---~-p~~~L~v~~~~~  158 (188)
                      .+++...+.++.|||+++.+.+.-..++|+|||+||++++..+   + +.+.+++.++..
T Consensus         8 ~~~~~~~~~l~~~l~~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~   67 (265)
T PRK13980          8 LDYEKVREIIVDFIREEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSS   67 (265)
T ss_pred             cCHHHHHHHHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCC
Confidence            4677889999999999999754333444999999999998322   3 467899999864

>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase

Probab=97.98  E-value=1.2e-05  Score=70.12  Aligned_cols=83  Identities=18%  Similarity=0.246  Sum_probs=50.9

Q ss_pred             ecCCe-EEecCcccCCcceeEEeeec--ccccccccc---------------ccceecc---------------------
Q psy7151          18 LRPDL-IESASHLASNKADVIKTHHN--DSPLIRALR---------------EQGKVIE---------------------   58 (188)
Q Consensus        18 ~~g~~-I~~~~~~~HGk~~~V~s~H~--~~~Lf~~lp---------------~~s~vi~---------------------   58 (188)
                      ++|+. ..+.+...||.+..++..-.  ++.||+++|               +|++.+.                     
T Consensus       108 ~~gg~~~~~~~~~~~~~~~~l~~t~~~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~  187 (273)
T cd01747         108 LTSGETLLLEATEATNSALPLNFTEDALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTND  187 (273)
T ss_pred             HhCCCccccCCCccccceEEEEEccccccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEe
Confidence            34554 33356678998888853211  355787775               3444331                     


Q ss_pred             ------cccccccccccEEEEeecccccCChhh--------------HHHHHHHHHHhhCCC
Q psy7151          59 ------PLKDFHKDELRLYGLQFHPEVDLTNEG--------------RTMLKNFLFDVCGLT  100 (188)
Q Consensus        59 ------pi~Ai~~~~~~i~GVQFHPE~~~t~~G--------------~~il~nFl~~i~~~~  100 (188)
                            -++++++.+.|+||+|||||+...+-+              -+-+.||+..-|+..
T Consensus       188 d~~g~~fis~ie~~~~pi~gvQFHPEks~few~~~~~~~hs~~ai~~~q~~a~ffv~e~r~n  249 (273)
T cd01747         188 DWNGVEFISTVEAYKYPIYGVQWHPEKNAFEWKKSSSIPHSEEAIRLTQYFANFFVNEARKS  249 (273)
T ss_pred             cCCCceEEEEEEecCCceEEEecCCCcccccccccCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence                  036788877899999999997644433              234566666555543

Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.

>PRK05380 pyrG CTP synthetase; Validated

Probab=97.95  E-value=4.4e-06  Score=79.04  Aligned_cols=63  Identities=11%  Similarity=0.144  Sum_probs=45.1

Q ss_pred             CCcceeEEeeeccccccccccccceecc------cccccccccccE-EEEeecccccCCh-hhHHHHHHHHHHhh
Q psy7151          31 SNKADVIKTHHNDSPLIRALREQGKVIE------PLKDFHKDELRL-YGLQFHPEVDLTN-EGRTMLKNFLFDVC   97 (188)
Q Consensus        31 HGk~~~V~s~H~~~~Lf~~lp~~s~vi~------pi~Ai~~~~~~i-~GVQFHPE~~~t~-~G~~il~nFl~~i~   97 (188)
                      |-+-..||+.|++.  ++..  ++.+.+      -++|++.++.++ .|||||||....+ .+..||++|+....
T Consensus       457 hrHryeVNs~h~qa--l~~~--GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~  527 (533)
T PRK05380        457 HRHRYEVNNKYREQ--LEKA--GLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAAL  527 (533)
T ss_pred             cccceecCHHHHHH--Hhhc--CeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHH
Confidence            44455788888877  5543  344432      278999887765 5999999987654 57899999997654

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit

Probab=97.88  E-value=6.4e-06  Score=73.12  Aligned_cols=47  Identities=23%  Similarity=0.266  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCC---CCceEEEEe
Q psy7151         107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFP---GPGLAIRVI  156 (188)
Q Consensus       107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p---~~~L~v~~~  156 (188)
                      +|+++.+++||++++++++++   |+|||+||+|++..+..   .+.+++-+.
T Consensus         1 ~~~~~~~~~l~~~v~~~kVvV---alSGGVDSsvla~ll~~~~G~~v~av~vd   50 (311)
T TIGR00884         1 NFIEEAVEEIREQVGDAKVII---ALSGGVDSSVAAVLAHRAIGDRLTCVFVD   50 (311)
T ss_pred             ChHHHHHHHHHHHhCCCcEEE---EecCChHHHHHHHHHHHHhCCCEEEEEEe
Confidence            478999999999999999988   99999999999954432   456666554

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit

>PRK09065 glutamine amidotransferase; Provisional

Probab=97.82  E-value=2.1e-05  Score=66.99  Aligned_cols=30  Identities=30%  Similarity=0.687  Sum_probs=20.9

Q ss_pred             cccccccccccEEEEeecccccCChhhHHHHHHHHH
Q psy7151          59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        59 pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      +++|+++. .++||+|||||..     ..++++++.
T Consensus       169 ~iqa~~~~-~~i~gvQfHPE~~-----~~~~~~~~~  198 (237)
T PRK09065        169 PHQAFRYG-PHAWGVQFHPEFT-----AHIMRAYLR  198 (237)
T ss_pred             CeeEEEeC-CCEEEEEeCCcCC-----HHHHHHHHH
Confidence            46788775 3799999999974     344455443

>PRK00876 nadE NAD synthetase; Reviewed

Probab=97.81  E-value=2.3e-05  Score=70.17  Aligned_cols=57  Identities=14%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             CcccchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHhhcC----CCCCceEEEEecC
Q psy7151         102 NFTLKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVMRHP----FPGPGLAIRVICG  158 (188)
Q Consensus       102 ~W~~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~~~----~p~~~L~v~~~~~  158 (188)
                      +.+++..++.+.+|||++|+. .+.-..++|+|||+||+++|.++    .+.+++++.+|..
T Consensus         9 ~~~~~~~~e~i~~~l~~~V~~~~~~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~   70 (326)
T PRK00876          9 KIDAAAEAERIRAAIREQVRGTLRRRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPER   70 (326)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCC
Confidence            356777889999999999886 22223334999999999999432    3467899999853

>PRK06186 hypothetical protein; Validated

Probab=97.80  E-value=1.3e-05  Score=68.68  Aligned_cols=58  Identities=10%  Similarity=0.126  Sum_probs=41.5

Q ss_pred             eeEEeeeccccccccccccceecc-----cccccccccc-cEEEEeecccccCC-hhhHHHHHHHHHHh
Q psy7151          35 DVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDEL-RLYGLQFHPEVDLT-NEGRTMLKNFLFDV   96 (188)
Q Consensus        35 ~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~-~i~GVQFHPE~~~t-~~G~~il~nFl~~i   96 (188)
                      ..||+.|+|.  ++  ..++.+++     -++|++.++. .+.|||||||-... .....||+.|+...
T Consensus       162 yeVNs~h~q~--i~--~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~~~~~~LF~~Fv~aa  226 (229)
T PRK06186        162 YGVNPEFVAA--LE--SGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALAGRPPPLVRAFLRAA  226 (229)
T ss_pred             EEECHHHHHH--Hh--cCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCCCCCCHHHHHHHHHH
Confidence            4588877777  54  44555543     2889997764 57999999998653 34468999999754

>PRK06490 glutamine amidotransferase; Provisional

Probab=97.78  E-value=4.4e-05  Score=65.27  Aligned_cols=49  Identities=29%  Similarity=0.575  Sum_probs=32.9

Q ss_pred             EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      +...|++.   ..+|.+..+.+     +++|+++. .++||+|||||+.     ..++++|+.
T Consensus       138 ~~~~H~d~---~~lP~~~~~LA~s~~~~~qa~~~~-~~v~g~QfHPE~~-----~~~~~~~i~  191 (239)
T PRK06490        138 VYHWHREG---FDLPAGAELLATGDDFPNQAFRYG-DNAWGLQFHPEVT-----RAMMHRWVV  191 (239)
T ss_pred             EEEECCcc---ccCCCCCEEEEeCCCCCeEEEEeC-CCEEEEeeCccCC-----HHHHHHHHH
Confidence            33335554   35777765543     57888874 4799999999997     466666664

>PRK13981 NAD synthetase; Provisional

Probab=97.77  E-value=2e-05  Score=74.06  Aligned_cols=53  Identities=15%  Similarity=0.043  Sum_probs=43.0

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC----CCCCceEEEEecC
Q psy7151         106 KSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP----FPGPGLAIRVICG  158 (188)
Q Consensus       106 ~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~----~p~~~L~v~~~~~  158 (188)
                      +.+.+.++.|||+++.+.+.-..++|+|||+||+|+|.++    .+++++++.||..
T Consensus       261 ~~~~~~l~~~l~~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~  317 (540)
T PRK13981        261 AEDYRALVLGLRDYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSR  317 (540)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCC
Confidence            5688999999999998765555566999999999999432    4578999999964

>TIGR00337 PyrG CTP synthase

Probab=97.68  E-value=2.6e-05  Score=73.86  Aligned_cols=60  Identities=12%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             CCcceeEEeeeccccccccccccceecc------cccccccccccEE-EEeecccccCCh-hhHHHHHHHHH
Q psy7151          31 SNKADVIKTHHNDSPLIRALREQGKVIE------PLKDFHKDELRLY-GLQFHPEVDLTN-EGRTMLKNFLF   94 (188)
Q Consensus        31 HGk~~~V~s~H~~~~Lf~~lp~~s~vi~------pi~Ai~~~~~~i~-GVQFHPE~~~t~-~G~~il~nFl~   94 (188)
                      |-+-..||+.|++.  ++.  .+..+++      .++|++.++.|++ |||||||....+ ....||+.|+.
T Consensus       457 hrHry~VNs~h~q~--l~~--~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~  524 (525)
T TIGR00337       457 HRHRYEVNNEYREQ--LEN--KGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVK  524 (525)
T ss_pred             ccceEEECHHHHHh--hhh--CCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHh
Confidence            33445688877776  443  3344432      3889998877765 999999987543 46789999984

CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).

>PLN02327 CTP synthase

Probab=97.59  E-value=5.5e-05  Score=72.01  Aligned_cols=66  Identities=14%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             CCcceeEEeeec-------ccccccccc-ccceecc------cccccccccccEE-EEeecccccCC-hhhHHHHHHHHH
Q psy7151          31 SNKADVIKTHHN-------DSPLIRALR-EQGKVIE------PLKDFHKDELRLY-GLQFHPEVDLT-NEGRTMLKNFLF   94 (188)
Q Consensus        31 HGk~~~V~s~H~-------~~~Lf~~lp-~~s~vi~------pi~Ai~~~~~~i~-GVQFHPE~~~t-~~G~~il~nFl~   94 (188)
                      .|+...||++|+       +.  ++.+. .+..+++      .++++++++.+++ |||||||.+.. .....+|..|+.
T Consensus       467 Yg~~~~VnerHrHRYeVN~q~--v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~  544 (557)
T PLN02327        467 YGNVSFVDERHRHRYEVNPEM--VPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIA  544 (557)
T ss_pred             hCCccceeeeeccccccCHHH--HHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHH
Confidence            455556888877       44  55552 4444443      2789988887776 99999998754 345789999997


Q ss_pred             HhhC
Q psy7151          95 DVCG   98 (188)
Q Consensus        95 ~i~~   98 (188)
                      ...+
T Consensus       545 Aa~~  548 (557)
T PLN02327        545 AASG  548 (557)
T ss_pred             HHHH
Confidence            6543

>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2

Probab=97.54  E-value=8.4e-05  Score=61.11  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=30.5

Q ss_pred             cccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHH
Q psy7151          47 IRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL   93 (188)
Q Consensus        47 f~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl   93 (188)
                      +..+|++..+++    .+.|++  .+++||+|||||+...   ..+++.|+
T Consensus       138 v~~lp~~~~vla~~~~~~~a~~--~~~~~gvQfHPE~~~~---~~~~~~f~  183 (184)
T TIGR03800       138 IVSVGNGVEILAKVGNRIVAVR--QGNILVSSFHPELTDD---HRVHEYFL  183 (184)
T ss_pred             cccCCCCeEEEEEeCCeeEEEE--eCCEEEEEeCCccCCC---chHHHHhh
Confidence            677888877665    244664  3479999999998632   38888887

Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.

>PRK05665 amidotransferase; Provisional

Probab=97.51  E-value=0.00017  Score=61.82  Aligned_cols=43  Identities=30%  Similarity=0.442  Sum_probs=30.4

Q ss_pred             eEEeeeccccccccccccceecc-----cccccccccccEEEEeecccccC
Q psy7151          36 VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDL   81 (188)
Q Consensus        36 ~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~   81 (188)
                      .+...|.+.  +..||++..+.+     ++.|++. ..++||+|||||...
T Consensus       143 ~~~~~H~D~--V~~LP~ga~~La~s~~~~~q~~~~-~~~~~g~QfHPE~~~  190 (240)
T PRK05665        143 TLLISHQDQ--VTALPEGATVIASSDFCPFAAYHI-GDQVLCFQGHPEFVH  190 (240)
T ss_pred             EEEEEcCCe--eeeCCCCcEEEEeCCCCcEEEEEe-CCCEEEEecCCcCcH
Confidence            344456666  778888766543     5677764 358999999999864

>PRK08250 glutamine amidotransferase; Provisional

Probab=97.47  E-value=0.0001  Score=62.79  Aligned_cols=64  Identities=22%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeec-ccccccccc----------------ccceecc-----cccccccccccEEEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHN-DSPLIRALR----------------EQGKVIE-----PLKDFHKDELRLYGL   73 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~-~~~Lf~~lp----------------~~s~vi~-----pi~Ai~~~~~~i~GV   73 (188)
                      +.+|||.|.+.+...+|....-.+.+. +.++|.++|                ++..+.+     +..|+... .++||+
T Consensus        98 a~alGg~V~~~~~~e~G~~~v~lt~~g~~d~l~~~~~~~~~v~~~H~d~~~lP~~a~~LA~s~~~~~qa~~~~-~~~~g~  176 (235)
T PRK08250         98 GEALGAKYEHSPEKEIGYFPITLTEAGLKDPLLSHFGSTLTVGHWHNDMPGLTDQAKVLATSEGCPRQIVQYS-NLVYGF  176 (235)
T ss_pred             HHHhCceeccCCCCceeEEEEEEccccccCchhhcCCCCcEEEEEecceecCCCCCEEEECCCCCCceEEEeC-CCEEEE
Confidence            567899999888777776432111111 123555554                3322221     35566543 479999


Q ss_pred             eeccccc
Q psy7151          74 QFHPEVD   80 (188)
Q Consensus        74 QFHPE~~   80 (188)
                      |||||..
T Consensus       177 QfHPE~~  183 (235)
T PRK08250        177 QCHMEFT  183 (235)
T ss_pred             eecCcCC
Confidence            9999975

>TIGR00552 nadE NAD+ synthetase

Probab=97.45  E-value=0.00013  Score=62.26  Aligned_cols=48  Identities=21%  Similarity=0.236  Sum_probs=34.4

Q ss_pred             chHHHHHHHHHHHHhCC---CcEEEEeeccccCCChhhHhhcC---CCCCceEEEEe
Q psy7151         106 KSREEELIKYVKETVGN---MKVLVRKLGLDLGLTPEVVMRHP---FPGPGLAIRVI  156 (188)
Q Consensus       106 ~~~ie~iI~~IRe~Vg~---~kVi~~~~GlSGGvDSavva~~~---~p~~~L~v~~~  156 (188)
                      ...++++.++||+.|..   ++|++   |+|||+||++++.++   ++...+++.++
T Consensus         3 ~~~~~~l~~~l~~~v~~~~~~~V~v---glSGGiDSsvla~l~~~~~~~~~~~~~~~   56 (250)
T TIGR00552         3 IKYVEEIEDFLRGYVQKSGAKGVVL---GLSGGIDSAVVAALCVEALGEQNHALLLP   56 (250)
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCEEE---ECCCcHHHHHHHHHHHHhhCCceEEEEEC
Confidence            35678888899998875   45555   999999999998432   33256666654

NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.

>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional

Probab=97.35  E-value=0.00015  Score=61.18  Aligned_cols=35  Identities=17%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             ccccccccccEEEEeecccccC-----ChhhHHHHHHHHH
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDL-----TNEGRTMLKNFLF   94 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~-----t~~G~~il~nFl~   94 (188)
                      ++++.+++.+++|+|||||+..     +..|..||+||+.
T Consensus       179 ia~i~~~~~~~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~  218 (219)
T PRK03619        179 IAGIVNEKGNVLGMMPHPERAVEPLLGSTDGLKLFESLLK  218 (219)
T ss_pred             hcccCCCCCCEEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence            7788877789999999999984     4689999999984

>PRK02628 nadE NAD synthetase; Reviewed

Probab=97.34  E-value=0.00014  Score=70.52  Aligned_cols=53  Identities=9%  Similarity=-0.049  Sum_probs=40.8

Q ss_pred             chHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh---hcC----C--CCCceEEEEecC
Q psy7151         106 KSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM---RHP----F--PGPGLAIRVICG  158 (188)
Q Consensus       106 ~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva---~~~----~--p~~~L~v~~~~~  158 (188)
                      +.+.+.++.++++++...+.-..++|||||+||+|++   ..+    .  +.+.+|+.||+.
T Consensus       342 ~~~~~~~v~~l~~~~~~~~~~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~  403 (679)
T PRK02628        342 YEAYNIQVSGLAQRLRATGLKKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGF  403 (679)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCC
Confidence            5577888999999998655555556999999999876   222    2  578999999974

>PRK07053 glutamine amidotransferase; Provisional

Probab=97.23  E-value=0.00028  Score=60.15  Aligned_cols=32  Identities=28%  Similarity=0.404  Sum_probs=21.6

Q ss_pred             cccccceecc-----cccccccccccEEEEeecccccC
Q psy7151          49 ALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDL   81 (188)
Q Consensus        49 ~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~   81 (188)
                      .+|++....+     +..|+.. ..++||+|||||...
T Consensus       146 ~lP~ga~~La~s~~~~~qaf~~-g~~~~g~QfHpE~~~  182 (234)
T PRK07053        146 DLPEGATLLASTPACRHQAFAW-GNHVLALQFHPEARE  182 (234)
T ss_pred             ecCCCCEEEEcCCCCCeeEEEe-CCCEEEEeeCccCCH
Confidence            4666654433     3556654 358999999999864

>PRK07567 glutamine amidotransferase; Provisional

Probab=97.20  E-value=0.0003  Score=60.21  Aligned_cols=34  Identities=32%  Similarity=0.615  Sum_probs=23.5

Q ss_pred             cccccccceecc-----cccccccccccEEEEeecccccC
Q psy7151          47 IRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDL   81 (188)
Q Consensus        47 f~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~   81 (188)
                      +..+|.+..+.+     +++|+++. .++||+|||||...
T Consensus       156 V~~lp~~~~vlA~s~~~~vqa~~~~-~~~~gvQfHPE~~~  194 (242)
T PRK07567        156 VSALPPGAVLLATSPTCPVQMFRVG-ENVYATQFHPELDA  194 (242)
T ss_pred             hhhCCCCCEEEEeCCCCCEEEEEeC-CCEEEEEeCCcCCH
Confidence            445555554433     47788764 47999999999864

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit

Probab=97.07  E-value=0.0003  Score=62.53  Aligned_cols=83  Identities=57%  Similarity=0.935  Sum_probs=57.8

Q ss_pred             CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151          10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML   89 (188)
Q Consensus        10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il   89 (188)
                      ..++++||.++|.++..+    |.+..++++|+-.++-...  ...++.|+.-+...+                      
T Consensus       118 ~~~la~Gt~~dD~~Es~~----G~~~~iks~~~~~gl~~~~--~~~ii~PL~~l~K~E----------------------  169 (311)
T TIGR00884       118 AEYLAQGTIYPDVIESAA----GTAHVIKSHHNVGGLPEDM--KLKLVEPLRELFKDE----------------------  169 (311)
T ss_pred             CCEEEECCCChhhhhhcc----ChhHhhhccCccccCChhh--cCceEEEcccCcHHH----------------------
Confidence            458999999999998764    6666787766533222111  133566665433221                      


Q ss_pred             HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEec
Q psy7151          90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVIC  157 (188)
Q Consensus        90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~  157 (188)
                                                |           +.+|...|++..++.++|||+|+|++|++|
T Consensus       170 --------------------------V-----------r~la~~lgLp~~~~~~~Pf~~p~La~Ri~g  200 (311)
T TIGR00884       170 --------------------------V-----------RKLGKELGLPEEIVWRHPFPGPGLAVRVLG  200 (311)
T ss_pred             --------------------------H-----------HHHHHHcCCCHHHhhCCCCCCCceEeeeec
Confidence                                      1           334677789999999999999999999987

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=97.03  E-value=0.00043  Score=67.67  Aligned_cols=37  Identities=11%  Similarity=-0.095  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151         107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~  143 (188)
                      .+....+-||++++...+..+.++|||||+||+++|.
T Consensus       330 ei~~~~~~~L~d~l~~~g~~g~vlglSGGiDSa~~a~  366 (700)
T PLN02339        330 EIALGPACWLWDYLRRSGASGFLLPLSGGADSSSVAA  366 (700)
T ss_pred             HHHHHHHHHHHHHHHHhCCCeEEEEccCCHHHHHHHH
Confidence            4666668899999987777777779999999999663

>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]

Probab=97.02  E-value=0.00078  Score=61.15  Aligned_cols=83  Identities=16%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEee---------eccccccc--cccccceec------ccccccccccccEEEEeeccc
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTH---------HNDSPLIR--ALREQGKVI------EPLKDFHKDELRLYGLQFHPE   78 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~---------H~~~~Lf~--~lp~~s~vi------~pi~Ai~~~~~~i~GVQFHPE   78 (188)
                      +.++|+...++..=-||-...|+-.         ++..--++  .++....+.      ..+++++|++.|++.||||||
T Consensus       264 alA~Ga~T~KmkFGHrG~NhPV~dl~tgrv~ITSQNHGyaVd~~s~~~~~~vth~nlnDgTvEGi~h~~~P~fSVQ~HPE  343 (368)
T COG0505         264 ALALGAKTYKMKFGHRGANHPVKDLDTGRVYITSQNHGYAVDEDSLVETLKVTHVNLNDGTVEGIRHKDLPAFSVQYHPE  343 (368)
T ss_pred             HHhcCCceeecccCCCCCCcCcccccCCeEEEEecCCceecChhhcCCCceeEEEeCCCCCccceecCCCceEEEccCCC
Confidence            5678888888876667755555311         11100000  111111111      137899999999999999999


Q ss_pred             ccCCh-hhHHHHHHHHHHhhC
Q psy7151          79 VDLTN-EGRTMLKNFLFDVCG   98 (188)
Q Consensus        79 ~~~t~-~G~~il~nFl~~i~~   98 (188)
                      ..--+ +-.-+|..|+..+..
T Consensus       344 AsPGPhDt~ylFd~Fi~~~~~  364 (368)
T COG0505         344 ASPGPHDTRYLFDEFIELMEA  364 (368)
T ss_pred             CCCCCcccHHHHHHHHHHHHH
Confidence            97544 346788888876543

>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis

Probab=96.85  E-value=0.0017  Score=52.91  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             eeccccccccccccceeccc----ccccccccccEEEEeecccccCChhhHHHHHHHH
Q psy7151          40 HHNDSPLIRALREQGKVIEP----LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFL   93 (188)
Q Consensus        40 ~H~~~~Lf~~lp~~s~vi~p----i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl   93 (188)
                      .|.+.  +..+|++..+.+.    ..|++.  +++||+|||||...   ...++++|+
T Consensus       133 ~h~~~--v~~~p~~~~~la~~~~~~~a~~~--~~~~g~qfHPE~~~---~~~~~~~f~  183 (183)
T cd01749         133 IRAPV--IEEVGPGVEVLAEYDGKIVAVRQ--GNVLATSFHPELTD---DTRIHEYFL  183 (183)
T ss_pred             EECcE--EEEcCCCcEEEEecCCEEEEEEE--CCEEEEEcCCccCC---CcchhhhhC
Confidence            46665  8888887766541    235553  47999999999863   236666663

Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase

Probab=96.79  E-value=0.00087  Score=59.25  Aligned_cols=89  Identities=53%  Similarity=0.827  Sum_probs=57.9

Q ss_pred             CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151          10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML   89 (188)
Q Consensus        10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il   89 (188)
                      ...+++|+.++|.++..+  .-+.+..++++|+-.++-..  ....++.|+.-+...                       
T Consensus       101 ~~~Ia~Gh~~dD~~Es~~--~~~~~~~IKs~~n~~Gl~a~--~~~~vi~PL~~l~K~-----------------------  153 (295)
T cd01997         101 AEYLAQGTLYPDVIESGS--GKGSADTIKSHHNVGGLPED--MKLKLIEPLRDLFKD-----------------------  153 (295)
T ss_pred             CCEEEECCcccchhhhcc--cccccccccccccccccchH--hhCCcccccccCcHH-----------------------
Confidence            458999999999998765  22235667765543322111  223456665543321                       


Q ss_pred             HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCch
Q psy7151          90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEER  161 (188)
Q Consensus        90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~  161 (188)
                                               +|           +.+|..-|++...+.++|||+|+|++|++|.-++
T Consensus       154 -------------------------EV-----------R~lar~lGLp~~~~~~~Pfp~p~La~Ri~g~it~  189 (295)
T cd01997         154 -------------------------EV-----------RELGRELGLPEEIVERHPFPGPGLAVRILGEVTE  189 (295)
T ss_pred             -------------------------HH-----------HHHHHHcCCCchhhCCCCCCCCcceeEEecCCCH
Confidence                                     12           3346667899999999999999999999874343

It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.

>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex

Probab=96.56  E-value=0.002  Score=55.85  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=23.1

Q ss_pred             ccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          68 LRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        68 ~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      .+++|.|||||.+...   +|.+||+..+
T Consensus       189 gnvlatqFHPEls~d~---rih~~Fl~~~  214 (248)
T PLN02832        189 GNLLATAFHPELTADT---RWHSYFVKMV  214 (248)
T ss_pred             CCEEEEEccCccCCcc---HHHHHHHHHH
Confidence            6999999999998765   9999999765

>TIGR03573 WbuX N-acetyl sugar amidotransferase

Probab=95.89  E-value=0.0084  Score=53.73  Aligned_cols=55  Identities=16%  Similarity=0.183  Sum_probs=38.1

Q ss_pred             CCCCcccc-hHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHhhc---CCCCCceEEEEe
Q psy7151          99 LTGNFTLK-SREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVMRH---PFPGPGLAIRVI  156 (188)
Q Consensus        99 ~~~~W~~~-~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~~---~~p~~~L~v~~~  156 (188)
                      -+.+|+.. +-.+++++++|+.-+. -.+++   |+|||+||++++..   .+..+.|++.+.
T Consensus        34 ~~~~~~~~~~~l~~l~~~~k~~~~~~yD~iV---~lSGGkDSs~la~ll~~~~gl~~l~vt~~   93 (343)
T TIGR03573        34 SKIDWDEREKELEELVDKIKKKGGGRYDCII---GVSGGKDSTYQAHVLKKKLGLNPLLVTVD   93 (343)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCCCCCEEE---ECCCCHHHHHHHHHHHHHhCCceEEEEEC
Confidence            34688654 4678888899887543 34666   99999999999832   233456777664

This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an

>KOG0370|consensus

Probab=95.66  E-value=0.0051  Score=62.03  Aligned_cols=68  Identities=18%  Similarity=0.133  Sum_probs=48.4

Q ss_pred             ccccccccccEEEEeecccccCChhh-HHHHHHHHHHhhCCCCCcccchHHHH-HHHHHHHHhCCCcEEE
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEG-RTMLKNFLFDVCGLTGNFTLKSREEE-LIKYVKETVGNMKVLV  127 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G-~~il~nFl~~i~~~~~~W~~~~~ie~-iI~~IRe~Vg~~kVi~  127 (188)
                      =+++.|.++|++.+|||||..-.+.- .-+|..|++.+-+....-+.+.++++ .+..+|.++....+++
T Consensus       315 NEGI~Hss~P~fSvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~tAs~~~t~~~~~~~~~~~~kVlvlG  384 (1435)
T KOG0370|consen  315 NEGIMHSSKPFFSVQFHPEATPGPHDTEYLFDVFIELVKKSKSTPTASAFITEPAKAAPRVEVKKVLVLG  384 (1435)
T ss_pred             CceEecCCCCceeeecCCcCCCCCcchHHHHHHHHHHHHHHhcCCcccccccccccccccccccEEEEEc
Confidence            35788889999999999999876654 78899999988877666666666532 2344565555444444

>KOG1559|consensus

Probab=94.78  E-value=0.033  Score=48.95  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=17.5

Q ss_pred             ccccccccccEEEEeeccccc
Q psy7151          60 LKDFHKDELRLYGLQFHPEVD   80 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~   80 (188)
                      +..++...+|++|+|||||..
T Consensus       251 vSTv~~~kYPvtgfQWHPEKn  271 (340)
T KOG1559|consen  251 VSTVESKKYPVTGFQWHPEKN  271 (340)
T ss_pred             EEeecceeccceeeeecCccC
Confidence            446777778999999999985

>TIGR00268 conserved hypothetical protein TIGR00268

Probab=94.78  E-value=0.024  Score=48.51  Aligned_cols=39  Identities=21%  Similarity=0.236  Sum_probs=25.6

Q ss_pred             HHHHhCC-CcEEEEeeccccCCChhhHhhcCC--CCCceEEEEec
Q psy7151         116 VKETVGN-MKVLVRKLGLDLGLTPEVVMRHPF--PGPGLAIRVIC  157 (188)
Q Consensus       116 IRe~Vg~-~kVi~~~~GlSGGvDSavva~~~~--p~~~L~v~~~~  157 (188)
                      +++.+.+ +++++   ++|||+||++++..+.  ..+.+++.+..
T Consensus         5 l~~~l~~~~~vlV---a~SGGvDSs~ll~la~~~g~~v~av~~~~   46 (252)
T TIGR00268         5 LRNFLKEFKKVLI---AYSGGVDSSLLAAVCSDAGTEVLAITVVS   46 (252)
T ss_pred             HHHHHHhcCCEEE---EecCcHHHHHHHHHHHHhCCCEEEEEecC
Confidence            3444443 55666   9999999999995443  23566776653

The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]

Probab=94.70  E-value=0.012  Score=53.51  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=24.5

Q ss_pred             CCcEEEEeeccccCCChhhHhhcCCC--CCceEEEEecCC
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVICGE  159 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~~~  159 (188)
                      ..+|++   |+||||||+|+|.++-.  =.+.|+-|=..+
T Consensus         3 ~~kV~v---~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~   39 (356)
T COG0482           3 KKKVLV---GMSGGVDSSVAAYLLKEQGYEVIGLFMKNWD   39 (356)
T ss_pred             CcEEEE---EccCCHHHHHHHHHHHHcCCeEEEEEEEeec
Confidence            356777   99999999999943332  236777776544

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]

Probab=94.64  E-value=0.049  Score=47.75  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=27.0

Q ss_pred             HHHHHHhCCC-cEEEEeeccccCCChhhHhhcCCC---CCceEEEEe
Q psy7151         114 KYVKETVGNM-KVLVRKLGLDLGLTPEVVMRHPFP---GPGLAIRVI  156 (188)
Q Consensus       114 ~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~~~~p---~~~L~v~~~  156 (188)
                      +.++..+++. +++.   +-|||+||+++|..+..   ++++++-+.
T Consensus         8 ~~l~~~ik~~~kv~v---AfSGGvDSslLa~la~~~lG~~v~AvTv~   51 (269)
T COG1606           8 ERLKKAIKEKKKVVV---AFSGGVDSSLLAKLAKEALGDNVVAVTVD   51 (269)
T ss_pred             HHHHHHHhhcCeEEE---EecCCccHHHHHHHHHHHhccceEEEEEe
Confidence            3444444444 5655   99999999999965532   677777653

>PRK00919 GMP synthase subunit B; Validated

Probab=94.54  E-value=0.032  Score=49.74  Aligned_cols=28  Identities=54%  Similarity=0.992  Sum_probs=24.8

Q ss_pred             eccccCCChhhHhhcCCCCCceEEEEec
Q psy7151         130 LGLDLGLTPEVVMRHPFPGPGLAIRVIC  157 (188)
Q Consensus       130 ~GlSGGvDSavva~~~~p~~~L~v~~~~  157 (188)
                      +|..-|++...+.|+|||+|+|+.|+++
T Consensus       171 la~~lGLp~~~~~r~p~~~pcLa~Ri~g  198 (307)
T PRK00919        171 VARALGLPEEISERMPFPGPGLAVRIIG  198 (307)
T ss_pred             HHHHcCCChhhhCCCCCCCCceeEEeec
Confidence            4667789999999999999999999975

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34

Probab=94.23  E-value=0.012  Score=53.51  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=19.6

Q ss_pred             cEEEEeeccccCCChhhHhhcCCC--CCceEEEEecCC
Q psy7151         124 KVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVICGE  159 (188)
Q Consensus       124 kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~~~  159 (188)
                      +|++   |+||||||+|+|.++-.  -.+.|+-|-..+
T Consensus         2 kV~v---amSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~   36 (356)
T PF03054_consen    2 KVLV---AMSGGVDSSVAAALLKEQGYDVIGVTMRNWD   36 (356)
T ss_dssp             EEEE---E--SSHHHHHHHHHHHHCT-EEEEEEEE-SS
T ss_pred             eEEE---EccCCHHHHHHHHHHHhhcccceEEEEEEec
Confidence            4555   99999999999943321  236777776544

; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase

Probab=94.04  E-value=0.02  Score=50.73  Aligned_cols=27  Identities=19%  Similarity=0.057  Sum_probs=18.6

Q ss_pred             eeccccCCChhhHhhcCCC---CCceEEEE
Q psy7151         129 KLGLDLGLTPEVVMRHPFP---GPGLAIRV  155 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p---~~~L~v~~  155 (188)
                      ++|+|||+||++++..+..   .+.+++-+
T Consensus         3 lVa~SGGVDSsvla~ll~~~lG~~v~aV~v   32 (295)
T cd01997           3 ILALSGGVDSTVAAVLLHKAIGDRLTCVFV   32 (295)
T ss_pred             EEEEcCChHHHHHHHHHHHHhCCcEEEEEe
Confidence            3499999999999954443   23455544

It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.

>KOG2805|consensus

Probab=93.57  E-value=0.044  Score=49.49  Aligned_cols=32  Identities=16%  Similarity=0.071  Sum_probs=23.1

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEec
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVIC  157 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~  157 (188)
                      .+|++   |+||||||+|+|+++..  -++.|+-|-.
T Consensus         6 ~~Vvv---amSgGVDSsVaa~Ll~~~g~~v~gv~M~n   39 (377)
T KOG2805|consen    6 DRVVV---AMSGGVDSSVAARLLAARGYNVTGVFMKN   39 (377)
T ss_pred             ceEEE---EecCCchHHHHHHHHHhcCCCeeEEeeec
Confidence            34555   99999999999964432  2477787764

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=93.56  E-value=0.073  Score=41.37  Aligned_cols=28  Identities=18%  Similarity=0.040  Sum_probs=18.8

Q ss_pred             eeccccCCChhhHhhcCC---CCCceEEEEe
Q psy7151         129 KLGLDLGLTPEVVMRHPF---PGPGLAIRVI  156 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~---p~~~L~v~~~  156 (188)
                      ++++|||+||++++..+.   +.+.+++-+.
T Consensus         5 ~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~   35 (154)
T cd01996           5 IIGVSGGKDSSYALYLLKEKYGLNPLAVTVD   35 (154)
T ss_pred             EEECCCchhHHHHHHHHHHHhCCceEEEEeC
Confidence            459999999999994432   2245555543

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional

Probab=93.50  E-value=0.062  Score=48.82  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=22.1

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      ++|++   |+|||+||+|+|.++-.  -.+.++.|.
T Consensus         6 ~kVlV---alSGGVDSsvaa~LL~~~G~~V~~v~~~   38 (360)
T PRK14665          6 KRVLL---GMSGGTDSSVAAMLLLEAGYEVTGVTFR   38 (360)
T ss_pred             CEEEE---EEcCCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            45666   99999999999954432  246677664

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway

Probab=93.17  E-value=0.072  Score=42.64  Aligned_cols=27  Identities=15%  Similarity=-0.080  Sum_probs=18.0

Q ss_pred             eeccccCCChhhHhhcCCC--CCceEEEE
Q psy7151         129 KLGLDLGLTPEVVMRHPFP--GPGLAIRV  155 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p--~~~L~v~~  155 (188)
                      ++++|||+||++++..+..  .+..++.+
T Consensus         3 lv~~SGG~DS~~la~ll~~~g~~v~av~~   31 (177)
T cd01712           3 LALLSGGIDSPVAAWLLMKRGIEVDALHF   31 (177)
T ss_pred             EEEecCChhHHHHHHHHHHcCCeEEEEEE
Confidence            4599999999999944433  23444444

It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.

>PRK00074 guaA GMP synthase; Reviewed

Probab=93.02  E-value=0.079  Score=50.13  Aligned_cols=29  Identities=69%  Similarity=1.300  Sum_probs=25.0

Q ss_pred             eccccCCChhhHhhcCCCCCceEEEEecC
Q psy7151         130 LGLDLGLTPEVVMRHPFPGPGLAIRVICG  158 (188)
Q Consensus       130 ~GlSGGvDSavva~~~~p~~~L~v~~~~~  158 (188)
                      ++..-|++...+.++|||+|+|++|++|.
T Consensus       373 ~a~~~gLp~~~~~~~p~p~~~la~Ri~g~  401 (511)
T PRK00074        373 LGLELGLPEEIVYRHPFPGPGLAIRILGE  401 (511)
T ss_pred             HHHHcCCCHHHhCCCCCCCCceeeEEecc
Confidence            35556799999999999999999999873

>KOG0623|consensus

Probab=92.72  E-value=0.093  Score=48.18  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=26.8

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +.|+..  .+++++|||||.+. +.|...+++||..
T Consensus       175 i~ai~k--nN~~AtQFHPEKSG-~aGL~vl~~FL~~  207 (541)
T KOG0623|consen  175 ISAIRK--NNVHATQFHPEKSG-EAGLSVLRRFLHQ  207 (541)
T ss_pred             HHHHhc--CceeeEeccccccc-chhHHHHHHHHhc
Confidence            556653  58999999999964 5799999999974

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional

Probab=92.46  E-value=0.074  Score=48.44  Aligned_cols=32  Identities=16%  Similarity=0.126  Sum_probs=22.2

Q ss_pred             CcEEEEeeccccCCChhhHhhcCC--CCCceEEEEec
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPF--PGPGLAIRVIC  157 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~--p~~~L~v~~~~  157 (188)
                      ++|++   |+|||+||++++..+-  .-..+++.|..
T Consensus         6 ~kVlV---a~SGGvDSsv~a~lL~~~G~eV~av~~~~   39 (362)
T PRK14664          6 KRVLV---GMSGGIDSTATCLMLQEQGYEIVGVTMRV   39 (362)
T ss_pred             CEEEE---EEeCCHHHHHHHHHHHHcCCcEEEEEecC
Confidence            46666   9999999999884322  23467777653

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B

Probab=91.81  E-value=0.26  Score=41.34  Aligned_cols=19  Identities=32%  Similarity=0.289  Sum_probs=15.5

Q ss_pred             CCcEEEEeeccccCCChhhHhh
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva~  143 (188)
                      +..|.+   .+|||+||++++.
T Consensus        15 ~~~v~~---~LSGGlDSs~va~   33 (269)
T cd01991          15 DVPVGV---LLSGGLDSSLVAA   33 (269)
T ss_pred             CCceEE---eecccHHHHHHHH
Confidence            455666   9999999999993

This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .

>PRK13795 hypothetical protein; Provisional

Probab=91.20  E-value=0.26  Score=47.85  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=30.2

Q ss_pred             ccchHHHHHHHHHHHHhCC--CcEEEEeeccccCCChhhHhh
Q psy7151         104 TLKSREEELIKYVKETVGN--MKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       104 ~~~~~ie~iI~~IRe~Vg~--~kVi~~~~GlSGGvDSavva~  143 (188)
                      .++.++++++++||+.+..  .++.+   +.|||.||+|++.
T Consensus       223 ~l~~~~~~ai~~Ir~~~~~~~~~v~V---a~SGGKDS~vll~  261 (636)
T PRK13795        223 HLEEKEKEAVNFIRGVAEKYNLPVSV---SFSGGKDSLVVLD  261 (636)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEE---EecCcHHHHHHHH
Confidence            4567888999999998863  45666   9999999999993

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases

Probab=90.96  E-value=0.086  Score=38.62  Aligned_cols=15  Identities=13%  Similarity=0.127  Sum_probs=13.3

Q ss_pred             eeccccCCChhhHhh
Q psy7151         129 KLGLDLGLTPEVVMR  143 (188)
Q Consensus       129 ~~GlSGGvDSavva~  143 (188)
                      ++++|||+||++++.
T Consensus         2 ~v~~SGG~DS~~ll~   16 (103)
T cd01986           2 LVAFSGGKDSSVAAA   16 (103)
T ss_pred             EEEEeCcHHHHHHHH
Confidence            469999999999994

The domain forms a apha/beta/apha fold which binds to Adenosine group..

>TIGR00364 exsB protein

Probab=90.95  E-value=0.096  Score=42.91  Aligned_cols=29  Identities=14%  Similarity=-0.103  Sum_probs=19.6

Q ss_pred             eeccccCCChhhHhhcCCC--CCceEEEEec
Q psy7151         129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVIC  157 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~~  157 (188)
                      ++++|||+||++++..+..  .+..++.+..
T Consensus         2 vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~   32 (201)
T TIGR00364         2 VVVLSGGQDSTTCLAIAKDEGYEVHAITFDY   32 (201)
T ss_pred             EEEeccHHHHHHHHHHHHHcCCcEEEEEEEC
Confidence            4699999999999943322  2456666553

This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional

Probab=90.93  E-value=0.19  Score=42.99  Aligned_cols=19  Identities=21%  Similarity=0.253  Sum_probs=15.7

Q ss_pred             CCcEEEEeeccccCCChhhHhh
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva~  143 (188)
                      .+++++   |+|||+||++++.
T Consensus        29 ~~kilV---a~SGG~DS~~LL~   47 (258)
T PRK10696         29 GDRVMV---CLSGGKDSYTLLD   47 (258)
T ss_pred             CCEEEE---EecCCHHHHHHHH
Confidence            456777   9999999999883

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)

Probab=90.74  E-value=0.21  Score=40.89  Aligned_cols=33  Identities=18%  Similarity=0.144  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhC-CCcEEEEeeccccCCChhhHhh
Q psy7151         108 REEELIKYVKETVG-NMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       108 ~ie~iI~~IRe~Vg-~~kVi~~~~GlSGGvDSavva~  143 (188)
                      +-+.+.+-|++.+. +..+.+   -+|||+||+.++.
T Consensus         2 ~r~~l~~av~~rl~~~~~i~~---~LSGGlDSs~i~~   35 (255)
T PF00733_consen    2 LRELLEEAVARRLRSDKPIGI---LLSGGLDSSAIAA   35 (255)
T ss_dssp             HHHHHHHHHHHHCGCTSEEEE---E--SSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEE---ECCCChhHHHHHH
Confidence            34555666777765 556666   8999999999993

Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=90.71  E-value=0.14  Score=41.06  Aligned_cols=15  Identities=7%  Similarity=0.228  Sum_probs=13.1

Q ss_pred             eeccccCCChhhHhh
Q psy7151         129 KLGLDLGLTPEVVMR  143 (188)
Q Consensus       129 ~~GlSGGvDSavva~  143 (188)
                      ++|+|||+||++++.
T Consensus         3 ~va~SGG~DS~~ll~   17 (189)
T TIGR02432         3 LVAVSGGVDSMALLH   17 (189)
T ss_pred             EEEeCCCHHHHHHHH
Confidence            349999999999994

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]

Probab=90.53  E-value=0.3  Score=41.83  Aligned_cols=20  Identities=20%  Similarity=0.253  Sum_probs=16.2

Q ss_pred             CcEEEEeeccccCCChhhHhhcC
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~  145 (188)
                      .++++   |+|||.||+++...+
T Consensus        22 ~~ilV---avSGGkDS~~ll~~L   41 (298)
T COG0037          22 YKILV---AVSGGKDSLALLHLL   41 (298)
T ss_pred             CeEEE---EeCCChHHHHHHHHH
Confidence            56666   999999999999433

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional

Probab=90.19  E-value=0.37  Score=42.82  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             cchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHh
Q psy7151         105 LKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       105 ~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva  142 (188)
                      ++....+.+..||+.+.+ ++++.   +.|||.||+|+.
T Consensus         9 L~~le~esi~iLrea~~~f~~~vv---~~SGGKDS~VLL   44 (301)
T PRK05253          9 LDQLEAESIHILREVAAEFENPVM---LYSIGKDSSVML   44 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEE---EecCCHHHHHHH
Confidence            455667778888887775 45555   999999999988

>PRK08349 hypothetical protein; Validated

Probab=89.17  E-value=0.2  Score=41.13  Aligned_cols=17  Identities=18%  Similarity=0.086  Sum_probs=13.8

Q ss_pred             eeccccCCChhhHhhcC
Q psy7151         129 KLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~  145 (188)
                      ++++|||+||+|++..+
T Consensus         4 vvllSGG~DS~v~~~~l   20 (198)
T PRK08349          4 VALLSSGIDSPVAIYLM   20 (198)
T ss_pred             EEEccCChhHHHHHHHH
Confidence            34999999999999433

>cd01998 tRNA_Me_trans tRNA methyl transferase

Probab=89.16  E-value=0.17  Score=45.50  Aligned_cols=28  Identities=7%  Similarity=-0.026  Sum_probs=19.3

Q ss_pred             eeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      ++++|||+||+++|..+-.  -...++.|-
T Consensus         3 lValSGGvDSsvla~lL~~~g~~v~~v~i~   32 (349)
T cd01998           3 VVAMSGGVDSSVAAALLKEQGYEVIGVFMK   32 (349)
T ss_pred             EEEecCCHHHHHHHHHHHHcCCcEEEEEEe
Confidence            3599999999999953322  245666654

This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=88.97  E-value=0.18  Score=39.88  Aligned_cols=14  Identities=21%  Similarity=0.249  Sum_probs=12.6

Q ss_pred             eeccccCCChhhHh
Q psy7151         129 KLGLDLGLTPEVVM  142 (188)
Q Consensus       129 ~~GlSGGvDSavva  142 (188)
                      ++++|||+||++++
T Consensus         3 ~v~~SGG~DS~~ll   16 (185)
T cd01993           3 LVALSGGKDSLVLL   16 (185)
T ss_pred             EEEeCCCHHHHHHH
Confidence            45999999999998

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]

Probab=88.97  E-value=0.22  Score=47.28  Aligned_cols=39  Identities=15%  Similarity=0.234  Sum_probs=30.3

Q ss_pred             cccccccccc-EEEEeecccccCCh-hhHHHHHHHHHHhhC
Q psy7151          60 LKDFHKDELR-LYGLQFHPEVDLTN-EGRTMLKNFLFDVCG   98 (188)
Q Consensus        60 i~Ai~~~~~~-i~GVQFHPE~~~t~-~G~~il~nFl~~i~~   98 (188)
                      ++++|..+.| +.|+|||||-...+ .+.-+|..|+....+
T Consensus       488 vEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~  528 (533)
T COG0504         488 VEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALE  528 (533)
T ss_pred             EEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHH
Confidence            6677777655 68999999997665 578899999876544

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed

Probab=88.91  E-value=0.15  Score=45.88  Aligned_cols=27  Identities=11%  Similarity=0.069  Sum_probs=18.4

Q ss_pred             eccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         130 LGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       130 ~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      +++|||+||++++..+-.  -...++-|-
T Consensus         5 ValSGGvDSsvla~lL~~~G~~V~~v~~~   33 (346)
T PRK00143          5 VGMSGGVDSSVAAALLKEQGYEVIGVFMK   33 (346)
T ss_pred             EEecCCHHHHHHHHHHHHcCCcEEEEEEe
Confidence            499999999999944322  135565554

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Probab=88.77  E-value=0.15  Score=46.02  Aligned_cols=28  Identities=14%  Similarity=0.020  Sum_probs=20.4

Q ss_pred             eeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      ++|+|||+||+|+|.++..  -.++++.|.
T Consensus         4 lValSGGvDSsv~a~lL~~~G~~V~~v~~~   33 (352)
T TIGR00420         4 IVGLSGGVDSSVSAYLLKQQGYEVVGVFMK   33 (352)
T ss_pred             EEEEeCCHHHHHHHHHHHHcCCeEEEEEEE
Confidence            3499999999999954332  257777774

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=88.57  E-value=0.23  Score=39.98  Aligned_cols=14  Identities=7%  Similarity=0.138  Sum_probs=10.6

Q ss_pred             eeccccCCChhhHh
Q psy7151         129 KLGLDLGLTPEVVM  142 (188)
Q Consensus       129 ~~GlSGGvDSavva  142 (188)
                      ++|+|||+||.+++
T Consensus         3 ~va~SGG~DS~~Ll   16 (182)
T PF01171_consen    3 LVAVSGGKDSMALL   16 (182)
T ss_dssp             EEE--SSHHHHHHH
T ss_pred             EEEEcCCHHHHHHH
Confidence            45999999999998

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>PRK01565 thiamine biosynthesis protein ThiI; Provisional

Probab=88.53  E-value=0.24  Score=45.24  Aligned_cols=26  Identities=23%  Similarity=0.151  Sum_probs=17.6

Q ss_pred             eccccCCChhhHhhcCCC-C-CceEEEE
Q psy7151         130 LGLDLGLTPEVVMRHPFP-G-PGLAIRV  155 (188)
Q Consensus       130 ~GlSGGvDSavva~~~~p-~-~~L~v~~  155 (188)
                      +++|||+||+|++..+.. | +..++.+
T Consensus       181 vllSGGiDS~vaa~l~~k~G~~v~av~~  208 (394)
T PRK01565        181 LLLSGGIDSPVAGYLAMKRGVEIEAVHF  208 (394)
T ss_pred             EEECCChhHHHHHHHHHHCCCEEEEEEE
Confidence            489999999999955433 1 2344554

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]

Probab=87.93  E-value=0.22  Score=39.57  Aligned_cols=17  Identities=6%  Similarity=0.040  Sum_probs=13.9

Q ss_pred             eeccccCCChhhHhhcC
Q psy7151         129 KLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~  145 (188)
                      ++++|||+||++++..+
T Consensus         3 ~v~~SGG~DS~vl~~l~   19 (185)
T cd01992           3 LVAVSGGPDSMALLHLL   19 (185)
T ss_pred             EEEeCCCHHHHHHHHHH
Confidence            45999999999999433

This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.

>cd01995 ExsB ExsB is a transcription regulator related protein

Probab=87.74  E-value=0.23  Score=39.27  Aligned_cols=28  Identities=14%  Similarity=-0.044  Sum_probs=17.9

Q ss_pred             eeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         129 KLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      ++++|||+||++++..+.+  .+..++.+.
T Consensus         3 lv~~SGG~DS~~~~~~~~~~~~~v~~~~~~   32 (169)
T cd01995           3 VVLLSGGLDSTTCLAWAKKEGYEVHALSFD   32 (169)
T ss_pred             EEEecCcHHHHHHHHHHHHcCCcEEEEEEE
Confidence            3499999999999943332  134445443

It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=87.55  E-value=0.45  Score=45.90  Aligned_cols=33  Identities=21%  Similarity=0.116  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151         108 REEELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       108 ~ie~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~  143 (188)
                      +.+.+.+.+|.++..+ .+-+   -||||+||+++|.
T Consensus       222 lr~~L~~AV~~rl~sdvpvGv---~LSGGLDSSlIaa  255 (586)
T PTZ00077        222 IREALEAAVRKRLMGDVPFGL---FLSGGLDSSIVAA  255 (586)
T ss_pred             HHHHHHHHHHHHhcCCCceEE---EecCCchHHHHHH
Confidence            3444455566655543 3444   7999999999984

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI

Probab=87.44  E-value=0.32  Score=44.09  Aligned_cols=27  Identities=15%  Similarity=0.046  Sum_probs=18.0

Q ss_pred             eccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         130 LGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       130 ~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      +++|||+||+|++..+-.  -+..++.+.
T Consensus       177 vllSGGiDS~vaa~ll~krG~~V~av~~~  205 (371)
T TIGR00342       177 ALLSGGIDSPVAAFMMMKRGCRVVAVHFF  205 (371)
T ss_pred             EEecCCchHHHHHHHHHHcCCeEEEEEEe
Confidence            599999999999943322  134555543

The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=87.40  E-value=0.22  Score=40.58  Aligned_cols=28  Identities=11%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             eeccccCCChhhHhhcCC---CCCceEEEEe
Q psy7151         129 KLGLDLGLTPEVVMRHPF---PGPGLAIRVI  156 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~---p~~~L~v~~~  156 (188)
                      ++++|||+||++++..+.   .....++-+.
T Consensus         2 vva~SGG~DS~~ll~ll~~~~~~~v~~v~vd   32 (202)
T cd01990           2 AVAFSGGVDSTLLLKAAVDALGDRVLAVTAT   32 (202)
T ss_pred             EEEccCCHHHHHHHHHHHHHhCCcEEEEEeC
Confidence            469999999999994332   2246666554

Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase

Probab=86.88  E-value=0.3  Score=37.32  Aligned_cols=15  Identities=13%  Similarity=0.268  Sum_probs=13.1

Q ss_pred             eeccccCCChhhHhh
Q psy7151         129 KLGLDLGLTPEVVMR  143 (188)
Q Consensus       129 ~~GlSGGvDSavva~  143 (188)
                      +++.|||.||++++.
T Consensus         3 ~v~~SGGkDS~~ll~   17 (173)
T cd01713           3 VVSFSGGKDSTVLLH   17 (173)
T ss_pred             EEEecCChHHHHHHH
Confidence            459999999999993

PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=86.63  E-value=0.68  Score=42.79  Aligned_cols=13  Identities=31%  Similarity=0.279  Sum_probs=11.8

Q ss_pred             ccccCCChhhHhh
Q psy7151         131 GLDLGLTPEVVMR  143 (188)
Q Consensus       131 GlSGGvDSavva~  143 (188)
                      .+|||+||++++.
T Consensus       259 ~LSGGlDSs~iaa  271 (467)
T TIGR01536       259 LLSGGLDSSLVAA  271 (467)
T ss_pred             EecCChhHHHHHH
Confidence            8999999999983

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>PRK13794 hypothetical protein; Provisional

Probab=86.59  E-value=0.48  Score=44.63  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=28.3

Q ss_pred             cchHHHHHHHHHHHHhC--CCcEEEEeeccccCCChhhHhh
Q psy7151         105 LKSREEELIKYVKETVG--NMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       105 ~~~~ie~iI~~IRe~Vg--~~kVi~~~~GlSGGvDSavva~  143 (188)
                      ++.+..+.++.||+.+.  ...+++   +.|||.||+++..
T Consensus       228 l~~~~~~a~~~i~~~~~~~~~~v~v---s~SGGKDS~v~L~  265 (479)
T PRK13794        228 LDKYERNSIGFIRNTAEKINKPVTV---AYSGGKDSLATLL  265 (479)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCEEE---EecchHHHHHHHH
Confidence            45677888999999876  345666   9999999999773

>PRK08384 thiamine biosynthesis protein ThiI; Provisional

Probab=86.42  E-value=0.35  Score=44.41  Aligned_cols=20  Identities=25%  Similarity=0.090  Sum_probs=15.3

Q ss_pred             CcEEEEeeccccCCChhhHhhcC
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~  145 (188)
                      .++++   ++|||+||.|+|..+
T Consensus       181 gkvlv---llSGGiDSpVAa~ll  200 (381)
T PRK08384        181 GKVVA---LLSGGIDSPVAAFLM  200 (381)
T ss_pred             CcEEE---EEeCChHHHHHHHHH
Confidence            34555   999999999999433

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional

Probab=85.90  E-value=0.82  Score=42.42  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             HHHHHHhCC-CcEEEEeeccccCCChhhHhh
Q psy7151         114 KYVKETVGN-MKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       114 ~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~  143 (188)
                      ..+++.+.+ +++++   |+|||+||.++..
T Consensus         6 ~~l~~~l~~~~~ilv---avSGG~DS~~Ll~   33 (436)
T PRK10660          6 LTLNRQLLTSRQILV---AFSGGLDSTVLLH   33 (436)
T ss_pred             HHHHHhcCCCCeEEE---EecCCHHHHHHHH
Confidence            445555554 56666   9999999999884

>PRK11106 queuosine biosynthesis protein QueC; Provisional

Probab=85.44  E-value=0.57  Score=40.13  Aligned_cols=29  Identities=7%  Similarity=0.056  Sum_probs=19.9

Q ss_pred             eccccCCChhhHhhcCCCC--CceEEEEecC
Q psy7151         130 LGLDLGLTPEVVMRHPFPG--PGLAIRVICG  158 (188)
Q Consensus       130 ~GlSGGvDSavva~~~~p~--~~L~v~~~~~  158 (188)
                      +.+|||+||++++..+...  .++++-+-.+
T Consensus         6 Vl~SGG~DSt~~l~~a~~~~~~v~alt~dyg   36 (231)
T PRK11106          6 VVFSGGQDSTTCLIQALQQYDEVHCVTFDYG   36 (231)
T ss_pred             EEeeCcHHHHHHHHHHHhcCCeEEEEEEEeC
Confidence            4999999999999654432  4556555433

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=85.27  E-value=0.81  Score=43.82  Aligned_cols=31  Identities=23%  Similarity=0.134  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151         110 EELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       110 e~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~  143 (188)
                      +.+.+-+|.+...+ .+-+   -||||+||+++|.
T Consensus       214 ~~L~~aV~~rl~sdvpvGv---~LSGGLDSSlIaa  245 (554)
T PRK09431        214 DALEAAVKKRLMSDVPYGV---LLSGGLDSSLISA  245 (554)
T ss_pred             HHHHHHHHHHhcCCCceEE---EcCCCccHHHHHH
Confidence            33344455544433 3333   6899999999983

>PRK14561 hypothetical protein; Provisional

Probab=85.26  E-value=0.31  Score=40.22  Aligned_cols=17  Identities=6%  Similarity=-0.113  Sum_probs=13.9

Q ss_pred             eeccccCCChhhHhhcC
Q psy7151         129 KLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~  145 (188)
                      ++++|||+||++++..+
T Consensus         4 ~ValSGG~DSslll~~l   20 (194)
T PRK14561          4 GVLFSGGKDSSLAAILL   20 (194)
T ss_pred             EEEEechHHHHHHHHHH
Confidence            34999999999999543

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=85.26  E-value=0.71  Score=44.51  Aligned_cols=33  Identities=24%  Similarity=0.102  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151         108 REEELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       108 ~ie~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~  143 (188)
                      +.+.+.+-++.++..+ .+-+   -+|||+||+++|.
T Consensus       210 lr~~L~~aV~~rl~sdvpvgv---~LSGGLDSSlIaa  243 (578)
T PLN02549        210 LREAFEKAVIKRLMTDVPFGV---LLSGGLDSSLVAS  243 (578)
T ss_pred             HHHHHHHHHHHHhccCCceeE---eecCCccHHHHHH
Confidence            4444455566655433 3444   7999999999984

>PRK13820 argininosuccinate synthase; Provisional

Probab=83.90  E-value=0.61  Score=43.06  Aligned_cols=31  Identities=19%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             cEEEEeeccccCCChhhHhhcCCC----CCceEEEEec
Q psy7151         124 KVLVRKLGLDLGLTPEVVMRHPFP----GPGLAIRVIC  157 (188)
Q Consensus       124 kVi~~~~GlSGGvDSavva~~~~p----~~~L~v~~~~  157 (188)
                      +|++   ++|||+||++++..+..    +..+++.+..
T Consensus         4 kVvv---A~SGGvDSsvll~lL~e~~g~~~Viav~vd~   38 (394)
T PRK13820          4 KVVL---AYSGGLDTSVCVPLLKEKYGYDEVITVTVDV   38 (394)
T ss_pred             eEEE---EEeCcHHHHHHHHHHHHhcCCCEEEEEEEEC
Confidence            4555   99999999999954422    2466666543

>PLN00200 argininosuccinate synthase; Provisional

Probab=83.42  E-value=0.76  Score=42.61  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             cEEEEeeccccCCChhhHhhcCCCC---CceEEEEe
Q psy7151         124 KVLVRKLGLDLGLTPEVVMRHPFPG---PGLAIRVI  156 (188)
Q Consensus       124 kVi~~~~GlSGGvDSavva~~~~p~---~~L~v~~~  156 (188)
                      +|++   ++|||+||++++..+...   .++++-+-
T Consensus         7 kVvv---a~SGGlDSsvla~~L~e~~G~eViav~id   39 (404)
T PLN00200          7 KVVL---AYSGGLDTSVILKWLRENYGCEVVCFTAD   39 (404)
T ss_pred             eEEE---EEeCCHHHHHHHHHHHHhhCCeEEEEEEE
Confidence            5555   999999999999554332   35555543

>PRK04527 argininosuccinate synthase; Provisional

Probab=83.30  E-value=0.5  Score=43.77  Aligned_cols=31  Identities=6%  Similarity=-0.026  Sum_probs=20.9

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      ++|++   ++|||+||+++++.+..  ..++++-+-
T Consensus         3 ~kVvV---A~SGGvDSSvla~~l~e~G~~Viavt~d   35 (400)
T PRK04527          3 KDIVL---AFSGGLDTSFCIPYLQERGYAVHTVFAD   35 (400)
T ss_pred             CcEEE---EEcCChHHHHHHHHHHHcCCcEEEEEEE
Confidence            35555   99999999999954322  245665553

>PRK00509 argininosuccinate synthase; Provisional

Probab=83.27  E-value=0.79  Score=42.43  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=22.2

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC---CCceEEEEecC
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP---GPGLAIRVICG  158 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p---~~~L~v~~~~~  158 (188)
                      ++|++   ++|||+||++++..+..   ..++++-+-.+
T Consensus         3 ~kVvv---a~SGGlDSsvla~~l~e~lG~eViavt~d~G   38 (399)
T PRK00509          3 KKVVL---AYSGGLDTSVIIKWLKETYGCEVIAFTADVG   38 (399)
T ss_pred             CeEEE---EEcCCHHHHHHHHHHHHhhCCeEEEEEEecC
Confidence            34555   99999999999954432   24666655444

>PRK08576 hypothetical protein; Provisional

Probab=82.91  E-value=0.84  Score=42.74  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151         108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       108 ~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~  143 (188)
                      +.+...++|++.- +.++++   +.|||.||++++.
T Consensus       221 ~e~~~~~~Lr~~~-~~rVvV---afSGGKDStvLL~  252 (438)
T PRK08576        221 FEKASIKFLRKFE-EWTVIV---PWSGGKDSTAALL  252 (438)
T ss_pred             HHHHHHHHHHHcC-CCCEEE---EEcChHHHHHHHH
Confidence            3344455666654 346666   9999999999883

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=81.94  E-value=1.4  Score=42.44  Aligned_cols=13  Identities=23%  Similarity=0.217  Sum_probs=11.5

Q ss_pred             ccccCCChhhHhh
Q psy7151         131 GLDLGLTPEVVMR  143 (188)
Q Consensus       131 GlSGGvDSavva~  143 (188)
                      -||||+||+++|.
T Consensus       264 ~LSGGlDSs~Iaa  276 (628)
T TIGR03108       264 FLSGGVDSSAVVA  276 (628)
T ss_pred             eecCCccHHHHHH
Confidence            6999999998873

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]

Probab=81.33  E-value=1.1  Score=38.65  Aligned_cols=26  Identities=12%  Similarity=0.240  Sum_probs=17.9

Q ss_pred             HHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151         114 KYVKETVGNMKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       114 ~~IRe~Vg~~kVi~~~~GlSGGvDSavva  142 (188)
                      +|-|..+.+-++.+   +.|||+||+.++
T Consensus        52 ef~r~~id~~kiaV---A~SGG~DSsas~   77 (255)
T COG1365          52 EFERIKIDKPKIAV---AYSGGVDSSASA   77 (255)
T ss_pred             hcccCCCCCceEEE---EecCCcchHHHH
Confidence            34444444444444   999999999988

>TIGR00032 argG argininosuccinate synthase

Probab=81.15  E-value=0.99  Score=41.64  Aligned_cols=27  Identities=19%  Similarity=0.143  Sum_probs=18.0

Q ss_pred             eeccccCCChhhHhhcCCCC--CceEEEE
Q psy7151         129 KLGLDLGLTPEVVMRHPFPG--PGLAIRV  155 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~~p~--~~L~v~~  155 (188)
                      ++++|||+||++++..+...  .++++.+
T Consensus         3 vla~SGGlDSsvll~~l~e~g~~V~av~i   31 (394)
T TIGR00032         3 VLAYSGGLDTSVCLKWLREKGYEVIAYTA   31 (394)
T ss_pred             EEEEcCCHHHHHHHHHHHHcCCEEEEEEE
Confidence            45999999999999544321  3445444

argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
2vxo_A	697	Human Gmp Synthetase In Complex With Xmp Length = 6		5e-24
2vxo_A	697	Human Gmp Synthetase In Complex With Xmp Length = 6		4e-15
2vpi_A	218	Human Gmp Synthetase - Glutaminase Domain Length =		2e-09
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		7e-09
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		7e-08
1gpm_A	525	Escherichia Coli Gmp Synthetase Complexed With Amp		3e-06
3tqi_A	527	Structure Of The Gmp Synthase (Guaa) From Coxiella		4e-08
3uow_A	556	Crystal Structure Of Pf10_0123, A Gmp Synthetase Fr		7e-08
3uow_A	556	Crystal Structure Of Pf10_0123, A Gmp Synthetase Fr		3e-05
2ywc_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		1e-06
2ywc_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		1e-04
2ywb_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		1e-06
2ywb_A	503	Crystal Structure Of Gmp Synthetase From Thermus Th		1e-04
2dpl_A	308	Crystal Structure Of The Gmp Synthase From Pyrococc		1e-05
1wl8_A	189	Crystal Structure Of Ph1346 Protein From Pyrococcus		4e-04
2d7j_A	209	Crystal Structure Analysis Of Glutamine Amidotransf		5e-04

>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp Length = 697

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 59/70 (84%)
Query: 3   ELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD 62
           E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPLKD
Sbjct: 358 EMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKD 417
Query: 63  FHKDELRLYG 72
           FHKDE+R+ G
Sbjct: 418 FHKDEVRILG 427

>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp Length = 697

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 33  KADVIKTHHNDS-----PLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRT 87
           K +V+   H DS        + +   G ++  + +  K   +LYG QFHPEV LT  G+ 
Sbjct: 149 KEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESK---KLYGAQFHPEVGLTENGKV 205
Query: 88  MLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLV 127
           +LKNFL+D+ G +G FT+++RE E I+ +KE VG  KVLV
Sbjct: 206 ILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLV 245

>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain Length = 218

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 33  KADVIKTHHNDS-----PLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRT 87
           K +V+   H DS        + +   G ++  + +  K   +LYG QFHPEV LT  G+ 
Sbjct: 144 KEEVVLLTHGDSVDKVADGFKVVARSGNIVAGIANESK---KLYGAQFHPEVGLTENGKV 200
Query: 88  MLKNFLFDVCGLTGNFTL 105
           +LKNFL+D+ G +G FT+
Sbjct: 201 ILKNFLYDIAGCSGTFTV 218

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 4/80 (5%)
Query: 2   EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLK 61
           E LKL+ +   L QGT+ PD+IESA+  A+ KA VIK+HHN   L + ++    ++EPLK
Sbjct: 322 EALKLE-DVKWLAQGTIYPDVIESAAS-ATGKAHVIKSHHNVGGLPKEMKM--GLVEPLK 377
Query: 62  DFHKDELRLYGLQFHPEVDL 81
           +  KDE+R  GL+     D+
Sbjct: 378 ELFKDEVRKIGLELGLPYDM 397

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P      +E R YG+QFHPEV  T +G  ML+ F+ D+C     +T     ++ +  ++E
Sbjct: 164 PFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIRE 223
Query: 119 TVGNMKVLVRKLGLDLGLTPEV 140
            VG+ KV+   LGL  G+   V
Sbjct: 224 QVGDDKVI---LGLSGGVDSSV 242

>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And Pyrophosphate Length = 525

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 34/43 (79%), Gaps = 4/43 (9%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSE 169
           VRK+GL+LGL  +++ RHPFPGPGL +RV+ GE   ++K+Y +
Sbjct: 384 VRKIGLELGLPYDMLYRHPFPGPGLGVRVL-GE---VKKEYCD 422

>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella Burnetii Length = 527

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 58  EPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVK 117
            PL      + R +GLQFHPEV  T +G  +L +F+  +C    N+T K   E+ I+ ++
Sbjct: 166 SPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQ 225
Query: 118 ETVGNMKVLVR-KLGLDLGLTPEVVMR 143
           E VG  +V+V    G+D  +T  +V +
Sbjct: 226 EKVGKEQVIVGLSGGVDSAVTATLVHK 252

>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From Plasmodium Falciparum Length = 556

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           +  + +D N+T L QGTL PD+IES    + N +D IKTHHN   L + L+   K+ EP 
Sbjct: 352 VNNIDIDINKTFLLQGTLYPDIIESKC--SKNLSDTIKTHHNVGGLPKNLK--FKLFEPF 407
Query: 61  KDFHKDELRLYGLQFHPEVDLTN 83
           K   KD+++    + +   ++TN
Sbjct: 408 KYLFKDDVKTLSRELNLPEEITN 430

>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From Plasmodium Falciparum Length = 556

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
           V+ L  +L L  E+  RHPFPGPGLAIRVI
Sbjct: 415 VKTLSRELNLPEEITNRHPFPGPGLAIRVI 444

>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P+      + R YG+QFHPEV  T +G  +L+NFL ++ G+  ++T +   EEL++ V+E
Sbjct: 147 PVAAIASPDGRAYGVQFHPEVAHTPKGXQILENFL-ELAGVKRDWTPEHVLEELLREVRE 205
Query: 119 TVGNMKVLV 127
             G  +VL+
Sbjct: 206 RAGKDRVLL 214

>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus In Complex With Xmp Length = 503

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
           VR+L L LGL   + +RHPFPGPGLA+RV+
Sbjct: 362 VRELALLLGLPDTLRLRHPFPGPGLAVRVL 391

>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKE 118
           P+      + R YG+QFHPEV  T +G  +L+NFL ++ G+  ++T +   EEL++ V+E
Sbjct: 147 PVAAIASPDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRE 205
Query: 119 TVGNMKVLV 127
             G  +VL+
Sbjct: 206 RAGKDRVLL 214

>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus Thermophilus Length = 503

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVI 156
           VR+L L LGL   + +RHPFPGPGLA+RV+
Sbjct: 362 VRELALLLGLPDTLRLRHPFPGPGLAVRVL 391

>pdb|2DPL|A Chain A, Crystal Structure Of The Gmp Synthase From Pyrococcus Horikoshii Ot3 Length = 308

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 58/157 (36%), Gaps = 71/157 (45%)
Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
            EE+        L QGT+ PD IES           IK+HHN   L   L    K+IEPL
Sbjct: 112 FEEVAKKIGAEYLIQGTIAPDWIESQGK--------IKSHHNVGGLPEKL--NLKLIEPL 161
Query: 61  KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETV 120
           +D +KDE+R                                         EL K+     
Sbjct: 162 RDLYKDEVR-----------------------------------------ELAKF----- 175
Query: 121 GNMKVLVRKLGLDLGLTPE-VVMRHPFPGPGLAIRVI 156
                    LGL     PE +  R PFPGPGLA+RVI
Sbjct: 176 ---------LGL-----PEKIYNRMPFPGPGLAVRVI 198

>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus Horikoshii Length = 189

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           P++    +EL +YG+QFHPEV  T +G  +L+NF   +CG
Sbjct: 149 PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 187

>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase From Pyrococcus Horikoshii Ot3 Length = 209

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           P++    +EL +YG+QFHPEV  T +G  +L+NF   +CG
Sbjct: 169 PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	5e-30
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	2e-26
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	3e-19
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	5e-20
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	2e-13
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	3e-11
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	6e-20
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	2e-13
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	6e-11
3uow_A	556	GMP synthetase; structural genomics consortium, SG	1e-19
3uow_A	556	GMP synthetase; structural genomics consortium, SG	1e-13
3uow_A	556	GMP synthetase; structural genomics consortium, SG	5e-13
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	9e-18
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	2e-13
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	4e-11
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	5e-16
2a9v_A	212	GMP synthase; structural genomics, joint center fo	9e-13
2dpl_A	308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	1e-12
2dpl_A	308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	1e-09
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	7e-09
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	6e-08
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	2e-07

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score =  114 bits (288), Expect = 5e-30
 Identities = 50/74 (67%), Positives = 61/74 (82%)

Query: 1   MEELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPL 60
           + E+ L P +  L QGTLRPDLIESAS +AS KA++IKTHHND+ LIR LRE+GKVIEPL
Sbjct: 356 IGEMNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPL 415

Query: 61  KDFHKDELRLYGLQ 74
           KDFHKDE+R+ G +
Sbjct: 416 KDFHKDEVRILGRE 429

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score =  104 bits (261), Expect = 2e-26
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 66  DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKV 125
           +  +LYG QFHPEV LT  G+ +LKNFL+D+ G +G FT+++RE E I+ +KE VG  KV
Sbjct: 184 ESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKV 243

Query: 126 LV 127
           LV
Sbjct: 244 LV 245

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens} Length = 697

 Score = 83.5 bits (207), Expect = 3e-19
 Identities = 36/60 (60%), Positives = 44/60 (73%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLVKIIVEYDQMFKK 186
           VR LG +LGL  E+V RHPFPGPGLAIRVIC EE YI KD+ ET  ++KI+ ++    KK
Sbjct: 423 VRILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYICKDFPETNNILKIVADFSASVKK 482

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 85.6 bits (213), Expect = 5e-20
 Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
               + R +GLQFHPEV  T +G  +L +F+  +C    N+T K   E+ I+ ++E VG 
Sbjct: 171 MADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIEDSIRDIQEKVGK 230

Query: 123 MKVLVRKLGL 132
            +V+   +GL
Sbjct: 231 EQVI---VGL 237

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 23/33 (69%), Positives = 29/33 (87%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VRKLGL+LGL  +++ RHPFPGPGLAIR++ GE
Sbjct: 386 VRKLGLELGLPADLIYRHPFPGPGLAIRIL-GE 417

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii} Length = 527

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 3/62 (4%)

Query: 13  LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
           L QGT+ PD+IESA    + K  +IKTHHN   L   +  + K+IEPL++  KDE+R  G
Sbjct: 334 LGQGTIYPDVIESAKT-KTGKGHIIKTHHNVGGLPLNM--ELKLIEPLRELFKDEVRKLG 390

Query: 73  LQ 74
           L+
Sbjct: 391 LE 392

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 85.6 bits (213), Expect = 6e-20
 Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
              +E R YG+QFHPEV  T +G  ML+ F+ D+C     +T     ++ +  ++E VG+
Sbjct: 168 MANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAVARIREQVGD 227

Query: 123 MKVLVRKLGL 132
            KV+   LGL
Sbjct: 228 DKVI---LGL 234

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 21/33 (63%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VRK+GL+LGL  +++ RHPFPGPGL +RV+ GE
Sbjct: 384 VRKIGLELGLPYDMLYRHPFPGPGLGVRVL-GE 415

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1 Length = 525

 Score = 59.4 bits (145), Expect = 6e-11
 Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 15/68 (22%)

Query: 13  LCQGTLRPDLIESASHLASNKADVIKTHHN------DSPLIRALREQGKVIEPLKDFHKD 66
           L QGT+ PD+IESA+  A+ KA VIK+HHN      +  +         ++EPLK+  KD
Sbjct: 332 LAQGTIYPDVIESAAS-ATGKAHVIKSHHNVGGLPKEMKM--------GLVEPLKELFKD 382

Query: 67  ELRLYGLQ 74
           E+R  GL+
Sbjct: 383 EVRKIGLE 390

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 84.6 bits (210), Expect = 1e-19
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 66  DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKV 125
            E  +YG+Q+HPEV  + +G  M  NF +++C     F      E  +K +++   +  V
Sbjct: 199 KEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRYHELELKNIEKYKHDHYV 258

Query: 126 LVRKLGL 132
           +     +
Sbjct: 259 I---AAM 262

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           V+ L  +L L  E+  RHPFPGPGLAIRVI GE
Sbjct: 415 VKTLSRELNLPEEITNRHPFPGPGLAIRVI-GE 446

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum} Length = 556

 Score = 65.3 bits (160), Expect = 5e-13
 Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 4/73 (5%)

Query: 2   EELKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLK 61
             + +D N+T L QGTL PD+IES    + N +D IKTHHN   L + L  + K+ EP K
Sbjct: 353 NNIDIDINKTFLLQGTLYPDIIESKC--SKNLSDTIKTHHNVGGLPKNL--KFKLFEPFK 408

Query: 62  DFHKDELRLYGLQ 74
              KD+++    +
Sbjct: 409 YLFKDDVKTLSRE 421

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 79.0 bits (196), Expect = 9e-18
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN 122
               + R YG+QFHPEV  T +G  +L+NFL ++ G+  ++T +   EEL++ V+E  G 
Sbjct: 151 IASPDGRAYGVQFHPEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRERAGK 209

Query: 123 MKVLVRKLGL 132
            +VL   L +
Sbjct: 210 DRVL---LAV 216

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 66.3 bits (163), Expect = 2e-13
 Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VR+L L LGL   + +RHPFPGPGLA+RV+ GE
Sbjct: 362 VRELALLLGLPDTLRLRHPFPGPGLAVRVL-GE 393

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A* Length = 503

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 5/62 (8%)

Query: 13  LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYG 72
           L QGTL PD+IESA     + A  IK+HHN   L   L  + +++EP +   KDE+R   
Sbjct: 312 LAQGTLYPDVIESAG---GHGAAKIKSHHNVGGLPEDL--EFELLEPFRLLFKDEVRELA 366

Query: 73  LQ 74
           L 
Sbjct: 367 LL 368

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens} Length = 218

 Score = 71.8 bits (177), Expect = 5e-16
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 66  DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFT 104
           +  +LYG QFHPEV LT  G+ +LKNFL+D+ G +G FT
Sbjct: 179 ESKKLYGAQFHPEVGLTENGKVILKNFLYDIAGCSGTFT 217

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1 Length = 212

 Score = 62.9 bits (154), Expect = 9e-13
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 66  DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKS 107
               +Y  QFHPEV+ T  GR + +NF+  +C        ++
Sbjct: 169 KTRPIYATQFHPEVEHTQYGRDIFRNFI-GICASYREIQKEN 209

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Length = 308

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 1/33 (3%)

Query: 127 VRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGE 159
           VR+L   LGL  ++  R PFPGPGLA+RVI GE
Sbjct: 169 VRELAKFLGLPEKIYNRMPFPGPGLAVRVI-GE 200

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A Length = 308

 Score = 55.2 bits (134), Expect = 1e-09
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 14/64 (21%)

Query: 13  LCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE--QGKVIEPLKDFHKDELRL 70
           L QGT+ PD IES           IK+HHN    +  L E    K+IEPL+D +KDE+R 
Sbjct: 124 LIQGTIAPDWIESQG--------KIKSHHN----VGGLPEKLNLKLIEPLRDLYKDEVRE 171

Query: 71  YGLQ 74
               
Sbjct: 172 LAKF 175

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A Length = 189

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 59  PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG 98
           P++    +EL +YG+QFHPEV  T +G  +L+NF   +CG
Sbjct: 149 PIEAMKHEELPIYGVQFHPEVAHTEKGEEILRNFA-KLCG 187

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B* Length = 192

 Score = 49.4 bits (119), Expect = 6e-08
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           H    R+ G QFHPE  LT +G  +L+  L
Sbjct: 158 HD-ADRVCGFQFHPESILTTQGARLLEQTL 186

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1 Length = 195

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 64  HKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
           H+ E  +YG+QFHPE   T+ G  +L NFL
Sbjct: 164 HE-EYPIYGVQFHPESVGTSLGYKILYNFL 192

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	99.93
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.92
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.92
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.91
3uow_A	556	GMP synthetase; structural genomics consortium, SG	99.9
2vpi_A	218	GMP synthase; guanine monophosphate synthetase, ph	99.52
2a9v_A	212	GMP synthase; structural genomics, joint center fo	99.3
1i1q_B	192	Anthranilate synthase component II; tryptophan bio	99.29
1qdl_B	195	Protein (anthranilate synthase (TRPG-SUBUNIT)); tr	99.14
1wl8_A	189	GMP synthase [glutamine-hydrolyzing] subunit A; tr	99.13
4gud_A	211	Imidazole glycerol phosphate synthase subunit His;	99.05
3r75_A	645	Anthranilate/para-aminobenzoate synthases compone;	99.05
3fij_A	254	LIN1909 protein; 11172J, uncharacterized protein,	98.93
2v4u_A	289	CTP synthase 2; pyrimidine biosynthesis, glutamine	98.84
3d54_D	213	Phosphoribosylformylglycinamidine synthase 1; alph	98.81
3q4g_A	279	NH(3)-dependent NAD(+) synthetase; structural geno	98.77
2w7t_A	273	CTP synthetase, putative cytidine triphosphate syn	98.77
1a9x_B	379	Carbamoyl phosphate synthetase (small chain); amid	98.68
1gpw_B	201	Amidotransferase HISH; lyase/transferase, complex	98.63
1wxi_A	275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	98.6
2ywj_A	186	Glutamine amidotransferase subunit PDXT; uncharact	98.57
1kqp_A	271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	98.47
1l9x_A	315	Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCO	98.46
3dpi_A	285	NAD+ synthetase; ssgcid, decode, structural genomi	98.39
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	98.37
3fiu_A	249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	98.31
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	98.24
3m3p_A	250	Glutamine amido transferase; structural genomics,	98.23
3l7n_A	236	Putative uncharacterized protein; glutamine amidot	98.13
1ka9_H	200	Imidazole glycerol phosphtate synthase; riken stru	98.11
1o1y_A	239	Conserved hypothetical protein TM1158; flavodoxin-	98.09
2dpl_A	308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	98.0
2nv0_A	196	Glutamine amidotransferase subunit PDXT; 3-layer(A	97.99
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	97.99
2e18_A	257	NH(3)-dependent NAD(+) synthetase; ligase, structu	97.97
3p52_A	249	NH(3)-dependent NAD(+) synthetase; structural geno	97.97
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.94
1xng_A	268	NH(3)-dependent NAD(+) synthetase; amidotransferas	97.9
2ywd_A	191	Glutamine amidotransferase subunit PDXT; pyridoxin	97.86
1q7r_A	219	Predicted amidotransferase; structural genomics, Y	97.86
2iss_D	208	Glutamine amidotransferase subunit PDXT; (beta/alp	97.81
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	97.74
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	97.53
2abw_A	227	PDX2 protein, glutaminase; PLP-synthase, vitamin B	97.24
3uow_A	556	GMP synthetase; structural genomics consortium, SG	96.84
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	96.8
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	96.79
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	96.53
1wy5_A	317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	94.24
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	92.33
1sur_A	215	PAPS reductase; assimilatory sulfate reduction, 3-	91.65
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	91.51
3bl5_A	219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	91.47
2der_A	380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	91.46
2pg3_A	232	Queuosine biosynthesis protein QUEC; YP_049261.1,	89.66
2hma_A	376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	89.26
3k32_A	203	Uncharacterized protein MJ0690; predicted subunit	87.29
2c5s_A	413	THII, probable thiamine biosynthesis protein THII;	87.02
2o8v_A	252	Phosphoadenosine phosphosulfate reductase; disulfi	86.41
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	86.32
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	86.08
1vl2_A	421	Argininosuccinate synthase; TM1780, structural gen	85.35
1ni5_A	433	Putative cell cycle protein MESJ; structural genom	84.25
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	84.2
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	83.76
3a2k_A	464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	83.5
2vdj_A	301	Homoserine O-succinyltransferase; methionine biosy	82.36
2h2w_A	312	Homoserine O-succinyltransferase; TM0881, (EC 2.3.	81.76

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=99.93  E-value=4.4e-26  Score=210.89  Aligned_cols=117  Identities=28%  Similarity=0.447  Sum_probs=97.5

Q ss_pred             EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEE  111 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~  111 (188)
                      ++++|++.  +..+|+++.+++     +++|+++.++++||+|||||+.+|+.|.+||+||+..+|+|+++|+|++++++
T Consensus       139 v~~~H~~~--V~~lp~g~~v~A~s~~~~i~ai~~~~~~i~gvQFHPE~~~~~~g~~ll~nF~~~i~~~~~~~~~~~~~~~  216 (525)
T 1gpm_A          139 VWMSHGDK--VTAIPSDFITVASTESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDD  216 (525)
T ss_dssp             EEEEECSE--EEECCTTCEEEEECSSCSCSEEEETTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCCCCCHHHHHHH
T ss_pred             EEEEccce--eeeCCCCCEEEEECCCCCEEEEEECCCCEEEEecCCCCCcchhHHHHHHHHHHhhhhccccchHHHHHHh
Confidence            44445554  455555555543     58899998889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC---CCCceEEEEecC
Q psy7151         112 LIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF---PGPGLAIRVICG  158 (188)
Q Consensus       112 iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~---p~~~L~v~~~~~  158 (188)
                      ++++||++++++++++   |+|||+||+|++.++.   ..+..++.++..
T Consensus       217 ~~~~ir~~v~~~~vvv---alSGGvDSsv~a~ll~~a~G~~v~av~v~~g  263 (525)
T 1gpm_A          217 AVARIREQVGDDKVIL---GLSGGVDSSVTAMLLHRAIGKNLTCVFVDNG  263 (525)
T ss_dssp             HHHHHHHHHTTCEEEE---ECCSSHHHHHHHHHHHHHHGGGEEEEEEECS
T ss_pred             hhhhhhhhhcccceEE---EecCCCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            9999999999998888   9999999999994332   246777877654

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.92  E-value=3.8e-26  Score=211.50  Aligned_cols=114  Identities=30%  Similarity=0.471  Sum_probs=95.3

Q ss_pred             EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhhCCCCCcccchHHHH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEE  111 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~  111 (188)
                      ++++|++.  +..+|+++.+++     +++|+++.++++||+|||||+.+|+.|.+||+||+..+|+|+++|+|++++++
T Consensus       142 v~~~H~d~--v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~GvQFHPE~~~t~~G~~ll~nF~~~i~~~~~~w~~~~~~~~  219 (527)
T 3tqi_A          142 VWMSHGDI--VSELPPGFEATACTDNSPLAAMADFKRRFFGLQFHPEVTHTPQGHRILAHFVIHICQCIPNWTTKHIIED  219 (527)
T ss_dssp             EEEESSSC--BCSCCTTCEEEEEETTEEEEEEECSSSCEEEESBCSSSTTSTTHHHHHHHHHHTTSCCCCCCCSHHHHHH
T ss_pred             EEEEcccc--hhccCCCCEEEEEeCCCcEEEEEcCCCCEEEEEeccccccccccchhhhhhhhhcccccchhhHHHHHHH
Confidence            44455555  556666655543     58899988889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC---CCCceEEEE
Q psy7151         112 LIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF---PGPGLAIRV  155 (188)
Q Consensus       112 iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~---p~~~L~v~~  155 (188)
                      .+++||++++++++++   |+|||+||+|++.++.   ..+..++.+
T Consensus       220 ~i~~i~~~v~~~kvlv---alSGGvDSsvla~ll~~~~G~~v~av~v  263 (527)
T 3tqi_A          220 SIRDIQEKVGKEQVIV---GLSGGVDSAVTATLVHKAIGDQLVCVLV  263 (527)
T ss_dssp             HHHHHHHHHTTSCEEE---ECTTTHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred             HHHHHHHhcCCCeEEE---EEecCcCHHHHHHHHHHHhCCeEEEEEe
Confidence            9999999999999988   9999999999994332   234455554

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.92  E-value=1.2e-25  Score=206.85  Aligned_cols=134  Identities=28%  Similarity=0.380  Sum_probs=103.9

Q ss_pred             ecCCeEEecCcccCCcce----------------eEEeeeccccccccccccceecc-----cccccccccccEEEEeec
Q psy7151          18 LRPDLIESASHLASNKAD----------------VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        18 ~~g~~I~~~~~~~HGk~~----------------~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFH   76 (188)
                      ++|+.+.+.+.+.+|...                .++++|++.  +..+|+++.+++     +++|+++.++++||+|||
T Consensus        87 ~~GG~v~~~~~~e~G~~~v~~~~~~l~~~~~~~~~v~~~H~~~--v~~lp~g~~v~A~s~~~~i~ai~~~~~~~~gvQFH  164 (503)
T 2ywb_A           87 ELGGRVERAGRAEYGKALLTRHEGPLFRGLEGEVQVWMSHQDA--VTAPPPGWRVVAETEENPVAAIASPDGRAYGVQFH  164 (503)
T ss_dssp             TTTCEEECC---CEEEEECSEECSGGGTTCCSCCEEEEECSCE--EEECCTTCEEEEECSSCSCSEEECTTSSEEEESBC
T ss_pred             HhCCeEeeCCCCccceEEEEecCcHHhhcCCCccEEEEECCCc--cccCCCCCEEEEEECCCCEEEEEeCCCCEEEEecC
Confidence            467777776656666433                344445554  455555555543     588999988899999999


Q ss_pred             ccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC--CCCceEEE
Q psy7151          77 PEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF--PGPGLAIR  154 (188)
Q Consensus        77 PE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~--p~~~L~v~  154 (188)
                      ||+.+|+.|.+||+||+ .+|+|+++|+|++++++++++||++++++++++   |+|||+||+|++.++.  ..+..++.
T Consensus       165 PE~~~~~~g~~ll~~F~-~~~~~~~~~~~~~~~~~~i~~ir~~~~~~kvvv---alSGGvDSsvla~ll~~~g~~v~av~  240 (503)
T 2ywb_A          165 PEVAHTPKGMQILENFL-ELAGVKRDWTPEHVLEELLREVRERAGKDRVLL---AVSGGVDSSTLALLLAKAGVDHLAVF  240 (503)
T ss_dssp             TTSTTSTTHHHHHHHHH-HHTTCCCCCCHHHHHHHHHHHHHHHHTTSEEEE---EECSSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCcccccccHHHHHHHH-HHhhhhccccchhhhHHHHHhhhhhccCccEEE---EecCCcchHHHHHHHHHcCCeEEEEE
Confidence            99999999999999999 999999999999999999999999999989888   9999999999994332  24455666


Q ss_pred             Eec
Q psy7151         155 VIC  157 (188)
Q Consensus       155 ~~~  157 (188)
                      +..
T Consensus       241 vd~  243 (503)
T 2ywb_A          241 VDH  243 (503)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            553

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=99.91  E-value=2.1e-25  Score=213.04  Aligned_cols=137  Identities=33%  Similarity=0.497  Sum_probs=104.7

Q ss_pred             ecCCeEEecCcccCCccee-----------------EEeeeccccccccccccceecc----cccccccccccEEEEeec
Q psy7151          18 LRPDLIESASHLASNKADV-----------------IKTHHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        18 ~~g~~I~~~~~~~HGk~~~-----------------V~s~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFH   76 (188)
                      ++|+.+.+.+...||....                 ++++|++.  +..+|+++.+++    +++|+++.++++||+|||
T Consensus       117 ~lGG~v~~~~~~e~G~~~v~~~~~~~Lf~~l~~~~~v~~~H~~~--V~~lp~g~~vlA~s~~~i~ai~~~~~~i~GvQFH  194 (697)
T 2vxo_A          117 VFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDS--VDKVADGFKVVARSGNIVAGIANESKKLYGAQFH  194 (697)
T ss_dssp             HTTCCBCC-------CEEEEECTTSGGGTTCCSEEEECCCSSCC--BSSCCTTCEEEEEETTEEEEEEETTTTEEEESSC
T ss_pred             HhCCeEeecCCCccceEEEEecCCChhhhcCCccCcceeecccc--eecCCCCeEEEEEeCCceEEEEeCCCCEEEEEec
Confidence            5788888777777775322                 33333333  344444444433    478999988999999999


Q ss_pred             ccccCChhhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhc----CCCCCceE
Q psy7151          77 PEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRH----PFPGPGLA  152 (188)
Q Consensus        77 PE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~----~~p~~~L~  152 (188)
                      ||+.+|+.|..||+||+..+|+|+++|+|++++++++++||++++++++++   |+|||+||+|+|.+    ..+.+..+
T Consensus       195 PE~~~t~~g~~ll~nFl~~i~~~~~~~~~~~~~~~~i~~Ir~~v~~~~vvv---~lSGGvDSsVla~Ll~~alG~~~V~a  271 (697)
T 2vxo_A          195 PEVGLTENGKVILKNFLYDIAGCSGTFTVQNRELECIREIKERVGTSKVLV---LLSGGVDSTVCTALLNRALNQEQVIA  271 (697)
T ss_dssp             TTSSSSTTHHHHHHHHHTTTTCCCSCCCHHHHHHHHHHHHHHHHTTCEEEE---ECCSSHHHHHHHHHHHHHSCGGGEEE
T ss_pred             ccCCCCccchhhhhhhhhccccccccchhhHHHHHHHHHHHHHhcccceEE---EccCchHHHHHHHHHHHhcCCceEEE
Confidence            999999999999999999999999999999999999999999999989888   99999999999933    23467889


Q ss_pred             EEEecCC
Q psy7151         153 IRVICGE  159 (188)
Q Consensus       153 v~~~~~~  159 (188)
                      +.|+...
T Consensus       272 V~vd~g~  278 (697)
T 2vxo_A          272 VHIDNGF  278 (697)
T ss_dssp             EEEECSC
T ss_pred             EEecccc
Confidence            9988643

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=99.90  E-value=3.7e-25  Score=206.35  Aligned_cols=118  Identities=21%  Similarity=0.354  Sum_probs=101.8

Q ss_pred             ceeEEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhhCCCCCcccchH
Q psy7151          34 ADVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSR  108 (188)
Q Consensus        34 ~~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~  108 (188)
                      ...++++|++.  +..+|+++.+++     +++|+++.++++||+|||||+.+|+.|.+||+||+..+|+|+++|+|+++
T Consensus       164 ~~~v~~~H~d~--V~~lp~g~~vlA~s~~~~i~ai~~~~~~i~GvQFHPE~~~~~~G~~ll~nFl~~i~g~~~~~~~~~~  241 (556)
T 3uow_A          164 ITTVWMNHNDE--VTKIPENFYLVSSSENCLICSIYNKEYNIYGVQYHPEVYESLDGELMFYNFAYNICKCKKQFDPIRY  241 (556)
T ss_dssp             EEEEEEEEEEE--EEECCTTCEEEEEETTEEEEEEEETTTTEEEESSCTTSTTSTTHHHHHHHHHTTTTCCCC-CCHHHH
T ss_pred             ceEEEEEccce--eeccCCCcEEEEEeCCCCEEEEEECCCCEEEEEcCCCCCccccchHHHHHHHHHhhccccccccccc
Confidence            45677778887  788888877664     58999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhC-CCcEEEEeeccccCCChhhHhhcC---CCCCceEEEEec
Q psy7151         109 EEELIKYVKETVG-NMKVLVRKLGLDLGLTPEVVMRHP---FPGPGLAIRVIC  157 (188)
Q Consensus       109 ie~iI~~IRe~Vg-~~kVi~~~~GlSGGvDSavva~~~---~p~~~L~v~~~~  157 (188)
                      +++.+++||++ + +++|++   |+||||||+|+|.++   +..+..++.+..
T Consensus       242 ~~~~i~~ir~~-g~~~~vvv---alSGGvDSsv~a~ll~~~~G~~v~~v~vd~  290 (556)
T 3uow_A          242 HELELKNIEKY-KHDHYVIA---AMSGGIDSTVAAAYTHKIFKERFFGIFIDN  290 (556)
T ss_dssp             HHHHHHHHGGG-TTTCEEEE---ECCSSHHHHHHHHHHHHHHGGGEEEEEEEC
T ss_pred             cccceeeeeec-CCCceEEE---EcccCCCHHHHHHHHHHHhCCeEEEEEEec
Confidence            99999999999 8 778888   999999999999443   235677777764

>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}

Probab=99.52  E-value=5.9e-15  Score=122.22  Aligned_cols=86  Identities=34%  Similarity=0.595  Sum_probs=63.3

Q ss_pred             ecCCeEEecCcccCCcce-----------------eEEeeeccccccccccccceecc----cccccccccccEEEEeec
Q psy7151          18 LRPDLIESASHLASNKAD-----------------VIKTHHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        18 ~~g~~I~~~~~~~HGk~~-----------------~V~s~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFH   76 (188)
                      ++|+.+.+.+.+.+|...                 .++++|++.  +..+|+++.+++    .++|+++.+.++||+|||
T Consensus       112 ~~GG~v~~~~~~~~G~~~v~~~~~~~l~~~l~~~~~v~~~H~~~--v~~l~~~~~vlA~s~~~i~ai~~~~~~i~gvQfH  189 (218)
T 2vpi_A          112 VFGGTVHKKSVREDGVFNISVDNTCSLFRGLQKEEVVLLTHGDS--VDKVADGFKVVARSGNIVAGIANESKKLYGAQFH  189 (218)
T ss_dssp             HTTCCEEEEEECSCEEEEEEECTTSGGGTTCCSEEEEEECSEEE--ESSCCTTCEEEEEETTEEEEEEETTTTEEEESSC
T ss_pred             HhCCceEeCCCCcccEEEEEEccCChhHhcCCCCcEEeehhhhH--hhhcCCCCEEEEEcCCeEEEEEECCCCEEEEEcC
Confidence            577777777665566422                 233334444  444444444332    478898877899999999


Q ss_pred             ccccCChhhHHHHHHHHHHhhCCCCCccc
Q psy7151          77 PEVDLTNEGRTMLKNFLFDVCGLTGNFTL  105 (188)
Q Consensus        77 PE~~~t~~G~~il~nFl~~i~~~~~~W~~  105 (188)
                      ||+..++.|.+||+||+..+|+|+++|+|
T Consensus       190 PE~~~~~~g~~l~~~F~~~~~~~~~~w~~  218 (218)
T 2vpi_A          190 PEVGLTENGKVILKNFLYDIAGCSGTFTV  218 (218)
T ss_dssp             TTSTTSTTHHHHHHHHHTTTTCCCCCCCC
T ss_pred             CCCCCChhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999889999999996

>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1

Probab=99.30  E-value=4.8e-13  Score=109.87  Aligned_cols=69  Identities=28%  Similarity=0.495  Sum_probs=50.6

Q ss_pred             EEeeeccccccccccccceecc-----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhhCCCCCcccchH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSR  108 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~~W~~~~~  108 (188)
                      +++.|++.  ++.+|.+..+++     +++|+++.+.+++|+|||||+..++.|..||+||+. +|+....|++++|
T Consensus       137 v~~~H~~~--v~~l~~~~~vlA~s~d~~i~ai~~~~~~i~gvQfHPE~~~~~~g~~l~~~F~~-~~~~~~~~~~~~~  210 (212)
T 2a9v_A          137 VWENHNDE--IINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIG-ICASYREIQKENF  210 (212)
T ss_dssp             EEEEEEEE--EESCCTTEEEEEECSSCSCSEEEESSSSEEEESSCTTSTTSTTHHHHHHHHHH-HHHHHHHHHHC--
T ss_pred             EEeEhhhh--HhhCCCCcEEEEEeCCCCEEEEEECCCCEEEEEeCCCCCCCccHHHHHHHHHH-HHHHhhhccHhhc
Confidence            44445444  445555544433     478999877799999999999999999999999998 5666677888776

>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*

Probab=99.29  E-value=2e-12  Score=103.94  Aligned_cols=78  Identities=24%  Similarity=0.339  Sum_probs=54.3

Q ss_pred             eecCCeEEecCcccCCcceeEEeeecccccccccc-------ccce----------ecc----cccccccccccEEEEee
Q psy7151          17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRALR-------EQGK----------VIE----PLKDFHKDELRLYGLQF   75 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp-------~~s~----------vi~----pi~Ai~~~~~~i~GVQF   75 (188)
                      .++|+.+.+.+.+.||++..+  .+.+..+|++++       +|+.          +++    .++|+++.+.++||+||
T Consensus        91 ~~~Gg~v~~~~~~~~g~~~~~--~~~~~~l~~~~~~~~~v~~~H~~~v~~lp~~~~v~a~~~~~~~ai~~~~~~~~gvQf  168 (192)
T 1i1q_B           91 EAYGGYVGQAGEILHGKATSI--EHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHDADRVCGFQF  168 (192)
T ss_dssp             HHTSCCCCC---CCSSEEEEE--EECCCGGGTTSCSSEEEEECCC---CCCCTTCEEEEEETTEEEEEEETTTTEEEESS
T ss_pred             HHhCCEEEeCCCcEecceeEE--ecCCChHHhcCCCCcEEEechhhHhhhCCCccEEEECCCCcEEEEEECCCCEEEEEc
Confidence            356777776666778876655  344455666554       2322          221    26788887789999999


Q ss_pred             cccccCChhhHHHHHHHHHHh
Q psy7151          76 HPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        76 HPE~~~t~~G~~il~nFl~~i   96 (188)
                      |||+.+++.|.+||+||+..+
T Consensus       169 HPE~~~~~~g~~il~nf~~~~  189 (192)
T 1i1q_B          169 HPESILTTQGARLLEQTLAWA  189 (192)
T ss_dssp             BTTSTTCTTHHHHHHHHHHHH
T ss_pred             cCcccCCcccHHHHHHHHHHH
Confidence            999999999999999999764

>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1

Probab=99.14  E-value=2.3e-11  Score=98.09  Aligned_cols=75  Identities=31%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             ecCCeEEecCcccCCcceeEEeee-ccc--ccccccc-----------------ccceecc------cccccccccccEE
Q psy7151          18 LRPDLIESASHLASNKADVIKTHH-NDS--PLIRALR-----------------EQGKVIE------PLKDFHKDELRLY   71 (188)
Q Consensus        18 ~~g~~I~~~~~~~HGk~~~V~s~H-~~~--~Lf~~lp-----------------~~s~vi~------pi~Ai~~~~~~i~   71 (188)
                      ++|+.+.+.+...||....+  .+ .++  .||++++                 ++..+++      +++|+++.+.++|
T Consensus        93 ~~gg~v~~~~~~~~g~~~~v--~~~~~~~~~l~~~~~~~~~v~~~H~~~v~~l~~~~~vla~s~~~g~i~a~~~~~~~~~  170 (195)
T 1qdl_B           93 AFGAKIRRARKVFHGKISNI--ILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIY  170 (195)
T ss_dssp             HTTCEEEEEEEEEEEEEEEE--EECCSSCCSTTTTCCSEEEEEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESSSSEE
T ss_pred             HhCCEEeccCCCcCCCceEE--EECCCCHhHHHhcCCCceEEeccccchhhhCCCCcEEEEEECCCCcEEEEEeCCCCEE
Confidence            46777766665666655544  22 223  4554443                 3332221      3778888777899


Q ss_pred             EEeecccccCChhhHHHHHHHHH
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLF   94 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~   94 (188)
                      |+|||||+..++.|..||+||+.
T Consensus       171 gvQfHPE~~~~~~g~~l~~~f~~  193 (195)
T 1qdl_B          171 GVQFHPESVGTSLGYKILYNFLN  193 (195)
T ss_dssp             EESSBTTSTTCTTHHHHHHHHHH
T ss_pred             EEecCCCCCCCccHHHHHHHHHh
Confidence            99999999999999999999996

>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A

Probab=99.13  E-value=4.8e-11  Score=95.36  Aligned_cols=77  Identities=23%  Similarity=0.463  Sum_probs=53.0

Q ss_pred             eecCCeEEecCcccCCcceeEEeeeccccccccc-----------------cccceecc-----cccccccccccEEEEe
Q psy7151          17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-----------------REQGKVIE-----PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-----------------p~~s~vi~-----pi~Ai~~~~~~i~GVQ   74 (188)
                      .++|+.+.+.+.+.||.....  .+..+.+|+++                 |.+..+++     +++|+++.+.+++|+|
T Consensus        87 ~~~gg~v~~~~~~~~G~~~~~--~~~~~~l~~~~~~~~~~~~~h~~~v~~l~~~~~vla~s~~g~i~a~~~~~~~~~gvQ  164 (189)
T 1wl8_A           87 KFFGGKVGRGEKAEYSLVEIE--IIDEXEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQ  164 (189)
T ss_dssp             HHHTCEEEECSCCSCEEEEEE--ESCC--CCTTSCSEEEEEECCSEEEEECCTTEEEEEEESSCSCSEEEESSSCEEEES
T ss_pred             HHhCCceecCCCcccCceeEE--EecCchHHhCCCCceEEEEEeeeehhhCCCCcEEEEEcCCCCEEEEEeCCceEEEEe
Confidence            457888887776777765443  12233344443                 33333322     4788988777899999


Q ss_pred             ecccccCChhhHHHHHHHHHH
Q psy7151          75 FHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~~   95 (188)
                      ||||+..++.|.+||+||+..
T Consensus       165 fHPE~~~~~~g~~l~~~f~~~  185 (189)
T 1wl8_A          165 FHPEVAHTEKGEEILRNFAKL  185 (189)
T ss_dssp             SCTTSTTSTTHHHHHHHHHHH
T ss_pred             cCCCcCCCcchHHHHHHHHHH
Confidence            999999999999999999974

>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}

Probab=99.05  E-value=7.5e-11  Score=95.44  Aligned_cols=31  Identities=39%  Similarity=0.760  Sum_probs=25.7

Q ss_pred             ccccEEEEeecccccCChhhHHHHHHHHHHhhC
Q psy7151          66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG   98 (188)
Q Consensus        66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~   98 (188)
                      .++++||+|||||++ ++.|.+||+||++ +|+
T Consensus       175 ~~~~v~GvQFHPE~s-~~~G~~ll~nFl~-~~g  205 (211)
T 4gud_A          175 QAGNYYGVQFHPERS-SKAGARLIQNFLE-LRG  205 (211)
T ss_dssp             EETTEEEESSCGGGS-HHHHHHHHHHHHH-C--
T ss_pred             eCCCEEEEEccCEec-CccHHHHHHHHHH-Hhc
Confidence            346999999999986 8999999999995 565

>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*

Probab=99.05  E-value=9.2e-11  Score=111.26  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=61.7

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeeccccccccc-----------------cccceecc-----cccccccccccEEEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-----------------REQGKVIE-----PLKDFHKDELRLYGL   73 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-----------------p~~s~vi~-----pi~Ai~~~~~~i~GV   73 (188)
                      +.+||+.|.+.+.+.||+.+.+  .+....++.++                 |+++.+++     +++|+++.  ++|||
T Consensus       535 a~alGG~V~~~~~~~~G~~~~i--~~~~~~l~~~~~~~~~v~~~h~~~~~~lp~g~~v~A~s~dg~i~Ai~~~--~~~GV  610 (645)
T 3r75_A          535 NAILGIPLVRREVPNQGIQVEI--DLFGQRERVGFYNTYVAQTVRDEMDVDGVGTVAISRDPRTGEVHALRGP--TFSSM  610 (645)
T ss_dssp             HHHTTCCEEEEEEEEEEEEEEE--EETTEEEEEEEEEEEEEBCSCSEEEETTTEEEEEEECTTTCBEEEEEET--TEEEE
T ss_pred             HHHhCCEEEcCCCcccccceEE--eeecCcceecCCCcEEEEEehhhccccCCCCeEEEEEcCCCcEEEEEcC--CEEEE
Confidence            3578999999999999988776  33344444433                 33333332     47889875  57999


Q ss_pred             eecccccCChhhHHHHHHHHHHhhCCCCCcc
Q psy7151          74 QFHPEVDLTNEGRTMLKNFLFDVCGLTGNFT  104 (188)
Q Consensus        74 QFHPE~~~t~~G~~il~nFl~~i~~~~~~W~  104 (188)
                      |||||+++|+.|..||+||+..+...++.|+
T Consensus       611 QFHPE~~~t~~G~~Ll~nFl~~~~~~~~~~~  641 (645)
T 3r75_A          611 QFHAESVLTVDGPRILGEAITHAIRREKRMT  641 (645)
T ss_dssp             SSBTTSTTCTTHHHHHHHHHHHHTTTTC---
T ss_pred             EeCCeecCCcchHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999998876665543

>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}

Probab=98.93  E-value=7.8e-10  Score=92.95  Aligned_cols=62  Identities=19%  Similarity=0.331  Sum_probs=49.5

Q ss_pred             ceeEEeeeccccccccccccceecc-----cccccccc-ccc-EEEEeecccccCC--hhhHHHHHHHHHHhh
Q psy7151          34 ADVIKTHHNDSPLIRALREQGKVIE-----PLKDFHKD-ELR-LYGLQFHPEVDLT--NEGRTMLKNFLFDVC   97 (188)
Q Consensus        34 ~~~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~-~~~-i~GVQFHPE~~~t--~~G~~il~nFl~~i~   97 (188)
                      ...++++|++.  ++.+|+++.+++     .++|+++. +.+ ++|||||||.+.+  +.|..||+||+..+.
T Consensus       171 ~~~v~~~H~~~--v~~l~~g~~v~a~s~dg~ieai~~~~~~~~~~gvQfHPE~~~~~~~~~~~lf~~Fv~~~~  241 (254)
T 3fij_A          171 KKLVNSLHHQF--IKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESK  241 (254)
T ss_dssp             TEEECCBCSCE--ESSCCSSEEEEEEETTCCEEEEEESSCSSCEEEESSCGGGTGGGCHHHHHHHHHHHHHHH
T ss_pred             cEEEEEeccch--hhccCCCcEEEEEeCCCcEEEEEecCCCCeEEEEEcCCccCCCCCchHHHHHHHHHHHHH
Confidence            44577778877  777887766654     48899988 776 9999999999986  789999999996543

>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A

Probab=98.84  E-value=1.1e-09  Score=94.02  Aligned_cols=71  Identities=15%  Similarity=0.290  Sum_probs=55.2

Q ss_pred             CcceeEEeeec-------ccccccccc-ccceecc-----c-ccccccccccEE-EEeecccccCChh-hHHHHHHHHHH
Q psy7151          32 NKADVIKTHHN-------DSPLIRALR-EQGKVIE-----P-LKDFHKDELRLY-GLQFHPEVDLTNE-GRTMLKNFLFD   95 (188)
Q Consensus        32 Gk~~~V~s~H~-------~~~Lf~~lp-~~s~vi~-----p-i~Ai~~~~~~i~-GVQFHPE~~~t~~-G~~il~nFl~~   95 (188)
                      |+...|+++|+       +.  ++.+| .++.+++     . ++|+++.+.+++ |||||||+..++. +..||+||+..
T Consensus       196 ~~~~~v~~~H~H~y~vn~~~--v~~l~~~g~~v~A~s~dg~~ieaie~~~~p~~lGvQfHPE~~~~~~~~~~lf~~Fv~~  273 (289)
T 2v4u_A          196 GDVPFIEERHRHRFEVNPNL--IKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLA  273 (289)
T ss_dssp             TSCSEEEEEEEECEEECGGG--SGGGTTSSEEEEEEETTSCSEEEEEESSSSCEEEESSBGGGGCBTTBCCHHHHHHHHH
T ss_pred             CCCceEEEecccccccCHHH--HHhcccCCeEEEEEcCCCCeEEEEEcCCCCeEEEEECCCCCCCCCCchHHHHHHHHHH
Confidence            33346777765       55  78888 7766654     3 899999877765 9999999998765 79999999999


Q ss_pred             hhCCCCCcc
Q psy7151          96 VCGLTGNFT  104 (188)
Q Consensus        96 i~~~~~~W~  104 (188)
                      ++++..+|.
T Consensus       274 ~~~~~~~~~  282 (289)
T 2v4u_A          274 ATGNLNAYL  282 (289)
T ss_dssp             HHTCHHHHH
T ss_pred             HHhhhhhhh
Confidence            988877654

>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}

Probab=98.81  E-value=1.9e-09  Score=86.73  Aligned_cols=38  Identities=18%  Similarity=0.419  Sum_probs=32.2

Q ss_pred             cccccccccccEEEEeecccccC-----ChhhHHHHHHHHHHh
Q psy7151          59 PLKDFHKDELRLYGLQFHPEVDL-----TNEGRTMLKNFLFDV   96 (188)
Q Consensus        59 pi~Ai~~~~~~i~GVQFHPE~~~-----t~~G~~il~nFl~~i   96 (188)
                      +++|+++.+.++||||||||++.     ++.|.+||+||+..+
T Consensus       169 ~i~a~~~~~~~~~gvQfHPE~~~~~~~~~~~g~~l~~~f~~~~  211 (213)
T 3d54_D          169 RIAGVLNESGNVFGLMPHPERAVEELIGGEDGKKVFQSILNYL  211 (213)
T ss_dssp             GEEEEECSSSCEEEECSCSTTTTSTTTTCSTTSHHHHHHHHHC
T ss_pred             ceeEEEcCCCCEEEEeCCHHHhcCHhhhcCccHHHHHHHHHHh
Confidence            36677776779999999999987     689999999999753

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0

Probab=98.77  E-value=1.1e-09  Score=94.43  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=55.6

Q ss_pred             HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhc---CC----------CCCceEEEEe
Q psy7151          90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRH---PF----------PGPGLAIRVI  156 (188)
Q Consensus        90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~---~~----------p~~~L~v~~~  156 (188)
                      +.=+...|++.++|++++.++.++.|||+++...+....++|+|||+||++++..   ++          .-+.+++.||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p   84 (279)
T 3q4g_A            5 EHKIREEMRVLPSIDPQFEIERRVAFIKRKLTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLP   84 (279)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECC
T ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEec
Confidence            3445688999999999999999999999999865544555599999999999853   32          1268999999


Q ss_pred             cC
Q psy7151         157 CG  158 (188)
Q Consensus       157 ~~  158 (188)
                      ..
T Consensus        85 ~~   86 (279)
T 3q4g_A           85 YG   86 (279)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}

Probab=98.77  E-value=3.9e-09  Score=89.94  Aligned_cols=71  Identities=17%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             ceeEEeeec-------cccccccc-cccceec----------ccccccccccccE-EEEeecccccCChh-hHHHHHHHH
Q psy7151          34 ADVIKTHHN-------DSPLIRAL-REQGKVI----------EPLKDFHKDELRL-YGLQFHPEVDLTNE-GRTMLKNFL   93 (188)
Q Consensus        34 ~~~V~s~H~-------~~~Lf~~l-p~~s~vi----------~pi~Ai~~~~~~i-~GVQFHPE~~~t~~-G~~il~nFl   93 (188)
                      ...++++|+       +.  ++.+ |.++.++          ..++|+++.+.++ +|||||||++.++. +..||+||+
T Consensus       174 ~~~v~~~H~Hsy~v~~~~--v~~l~~~g~~v~A~s~d~~~~g~~ieaie~~~~p~~~GvQfHPE~~~~~~~~~~l~~~Fv  251 (273)
T 2w7t_A          174 SNIVVERHRHRYEVNTAY--FEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTPMDPAPTYLSFM  251 (273)
T ss_dssp             CSEEEEEEEECCEECGGG--HHHHHHTTCEEEEESCTTCCTTCCEEEEECTTSSSEEEESSCGGGSCBTTBCCHHHHHHH
T ss_pred             CceEEeecccccccCHHH--HHhhccCCcEEEEEcCCcCCCCCeEEEEEcCCCCeEEEEeCCCCcCCCCCchHHHHHHHH
Confidence            456777654       33  4455 5555442          1578999887775 59999999998876 599999999


Q ss_pred             HHhhCCCCCcccc
Q psy7151          94 FDVCGLTGNFTLK  106 (188)
Q Consensus        94 ~~i~~~~~~W~~~  106 (188)
                      ..+.+...+|..+
T Consensus       252 ~~~~~~~~~~~~~  264 (273)
T 2w7t_A          252 AAAAKKDYVWPQK  264 (273)
T ss_dssp             HHHHTCCCCCCSS
T ss_pred             HHHHHHHHhhhhc
Confidence            9988877777643

>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*

Probab=98.68  E-value=6.7e-09  Score=93.04  Aligned_cols=79  Identities=11%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             eeecCCeEEecCcccCCcceeE-----------Eeeeccccccc--cccccceecc------cccccccccccEEEEeec
Q psy7151          16 GTLRPDLIESASHLASNKADVI-----------KTHHNDSPLIR--ALREQGKVIE------PLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V-----------~s~H~~~~Lf~--~lp~~s~vi~------pi~Ai~~~~~~i~GVQFH   76 (188)
                      +.++|+.+.+.+...||..+.+           ...|+..  ++  .+|.+..+.+      .++|+++.++++||||||
T Consensus       275 a~A~GG~v~k~~~gh~g~n~pv~~~~~g~v~its~~H~~a--V~~~~Lp~~~~v~a~s~~Dg~ieai~~~~~pi~gVQFH  352 (379)
T 1a9x_B          275 ALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFA--VDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGN  352 (379)
T ss_dssp             HHHTTCCEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEE--ECSTTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSC
T ss_pred             HHHhCcEEEecccccccCceeeEecCCCcEEEEecCccce--EecccCCCCeEEEEEeCCCCcEEEEEECCCCEEEEEeC
Confidence            3467788877765555543332           1236555  44  3776655432      488999988899999999


Q ss_pred             ccccCCh-hhHHHHHHHHHHh
Q psy7151          77 PEVDLTN-EGRTMLKNFLFDV   96 (188)
Q Consensus        77 PE~~~t~-~G~~il~nFl~~i   96 (188)
                      ||...++ ++..||+||+..+
T Consensus       353 PE~~~~p~d~~~Lf~~Fl~~~  373 (379)
T 1a9x_B          353 PEASPGPHDAAPLFDHFIELI  373 (379)
T ss_dssp             TTCSSSCSTTTHHHHHHHHHH
T ss_pred             CcCCCCcccHHHHHHHHHHHH
Confidence            9999876 5799999999765

>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B

Probab=98.63  E-value=2.1e-08  Score=80.46  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=40.7

Q ss_pred             eeEEeeeccccccccccccceec-------ccccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          35 DVIKTHHNDSPLIRALREQGKVI-------EPLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        35 ~~V~s~H~~~~Lf~~lp~~s~vi-------~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ..++++|++.  +..+  +..++       .+++|+++.+ ++||+|||||++ ++.|.+||+||+..+
T Consensus       135 ~~v~~~H~~~--v~~~--~~~vla~s~~~g~~~~a~~~~~-~i~gvQfHPE~~-~~~~~~l~~~f~~~~  197 (201)
T 1gpw_B          135 GYYYFVHTYR--AVCE--EEHVLGTTEYDGEIFPSAVRKG-RILGFQFHPEKS-SKIGRKLLEKVIECS  197 (201)
T ss_dssp             EEEEEEESEE--EEEC--GGGEEEEEEETTEEEEEEEEET-TEEEESSCGGGS-HHHHHHHHHHHHHHS
T ss_pred             CeEEEECcce--eccC--CCEEEEEEccCCceEEEEEECC-CEEEEECCCccc-CHhHHHHHHHHHHHh
Confidence            3566678776  4433  22221       1477887755 899999999999 889999999999753

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*

Probab=98.60  E-value=6.3e-09  Score=89.06  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             hCCCCCcccchHHHHHHHHHHHHhCCCc-EEEEeeccccCCChhhHh---hcCCC-------C---CceEEEEecC
Q psy7151          97 CGLTGNFTLKSREEELIKYVKETVGNMK-VLVRKLGLDLGLTPEVVM---RHPFP-------G---PGLAIRVICG  158 (188)
Q Consensus        97 ~~~~~~W~~~~~ie~iI~~IRe~Vg~~k-Vi~~~~GlSGGvDSavva---~~~~p-------~---~~L~v~~~~~  158 (188)
                      -++.++|+++..++.++.|||+++...+ ....++|+||||||+|+|   +.++.       +   +++|+.||..
T Consensus        11 ~~~~~~~~~~~~i~~~~~~L~~~l~~~g~~~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~   86 (275)
T 1wxi_A           11 LGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYG   86 (275)
T ss_dssp             HTCCSCCCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSS
T ss_pred             hCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCC
Confidence            4899999999999999999999995433 223334999999999999   44331       1   6899999853

>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}

Probab=98.57  E-value=4.8e-08  Score=77.46  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=41.6

Q ss_pred             eEEeeeccccccccc-cccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          36 VIKTHHNDSPLIRAL-REQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        36 ~V~s~H~~~~Lf~~l-p~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      .+++.|++.  ++.+ |+++.+++    .++|+++  +++||+|||||.+.  .|.+||+||+..+
T Consensus       124 ~~~~~H~~~--v~~l~~~~~~v~a~sd~~~~a~~~--~~~~gvQfHPE~~~--~g~~l~~~F~~~~  183 (186)
T 2ywj_A          124 YGVFIRAPV--VDKILSDDVEVIARDGDKIVGVKQ--GKYMALSFHPELSE--DGYKVYKYFVENC  183 (186)
T ss_dssp             EEEESSCCE--EEEECCTTCEEEEEETTEEEEEEE--TTEEEESSCGGGST--THHHHHHHHHHHH
T ss_pred             EEEEEecce--eeecCCCCeEEEEEECCEEEEEee--CCEEEEECCCCcCC--chhHHHHHHHHHH
Confidence            345557776  6777 77766654    3678876  48999999999754  5999999999764

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A

Probab=98.47  E-value=9.6e-08  Score=81.30  Aligned_cols=58  Identities=14%  Similarity=0.197  Sum_probs=47.6

Q ss_pred             hCCCCCcccchHHHHHHHHHHHHhC---CCcEEEEeeccccCCChhhHh---hcCCC--------CCceEEEEec
Q psy7151          97 CGLTGNFTLKSREEELIKYVKETVG---NMKVLVRKLGLDLGLTPEVVM---RHPFP--------GPGLAIRVIC  157 (188)
Q Consensus        97 ~~~~~~W~~~~~ie~iI~~IRe~Vg---~~kVi~~~~GlSGGvDSavva---~~~~p--------~~~L~v~~~~  157 (188)
                      .++.++|+++..++.++.|||++|.   .++|++   |+||||||+|+|   +.+++        .+.+++.||.
T Consensus        10 ~~~~~~~~~~~~i~~~~~~L~d~v~~~g~~~vvv---gLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~   81 (271)
T 1kqp_A           10 LHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVL---GISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPH   81 (271)
T ss_dssp             HTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEE---ECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCS
T ss_pred             hCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEE---ECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCC
Confidence            4899999999999999999999994   456666   999999999996   33331        2688999884

>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1

Probab=98.46  E-value=4.6e-08  Score=84.92  Aligned_cols=62  Identities=19%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             eeccccccc--------cccccceecc-----c---ccccccccccEEEEeecccccCCh---------------hhHHH
Q psy7151          40 HHNDSPLIR--------ALREQGKVIE-----P---LKDFHKDELRLYGLQFHPEVDLTN---------------EGRTM   88 (188)
Q Consensus        40 ~H~~~~Lf~--------~lp~~s~vi~-----p---i~Ai~~~~~~i~GVQFHPE~~~t~---------------~G~~i   88 (188)
                      .|++.  ++        .+|.++.+++     .   ++++++.+.++||||||||+..|+               .|..|
T Consensus       191 ~H~~~--V~~~~~~~~~~l~~g~~v~A~s~dg~ve~i~~i~~~~~~i~GVQfHPE~~~~e~~~~~~~p~s~~a~~~~~~l  268 (315)
T 1l9x_A          191 FHKWS--LSVKNFTMNEKLKKFFNVLTTNTDGKIEFISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYL  268 (315)
T ss_dssp             EEEEE--CBHHHHHTCHHHHHHEEEEEEEESSSCEEEEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHH
T ss_pred             hhhhh--cCccccccccccCCCCEEEEEcCCCCEEEEEEeccCCCCEEEEEeCCCCCcccccccccCCccHHHHHHHHHH
Confidence            57776  55        5666665543     2   445577667899999999996521               47899


Q ss_pred             HHHHHHHhhCCCCCc
Q psy7151          89 LKNFLFDVCGLTGNF  103 (188)
Q Consensus        89 l~nFl~~i~~~~~~W  103 (188)
                      |++|+....+....|
T Consensus       269 f~~Fv~~a~~~~~~f  283 (315)
T 1l9x_A          269 AEFFVNEARKNNHHF  283 (315)
T ss_dssp             HHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHhccCCC
Confidence            999998765544434

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0

Probab=98.39  E-value=1e-07  Score=82.39  Aligned_cols=70  Identities=14%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh---hcC----CCC----CceEEEEecC
Q psy7151          90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM---RHP----FPG----PGLAIRVICG  158 (188)
Q Consensus        90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva---~~~----~p~----~~L~v~~~~~  158 (188)
                      +.=+-.-.+..+.++++..++.++.|||+++.+.+....++|+|||+||+|++   +.+    .++    ..+++.||..
T Consensus        11 ~~~i~~~~~~~~~~~~~~~i~~~v~~L~d~l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~   90 (285)
T 3dpi_A           11 RRAIAAELHVSPTFDARDEAERRIGFVADYLRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYG   90 (285)
T ss_dssp             HHHHHHHTTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCC
Confidence            33344567889999999999999999999998766555666999999999995   322    122    4789999864


Q ss_pred             C
Q psy7151         159 E  159 (188)
Q Consensus       159 ~  159 (188)
                      .
T Consensus        91 ~   91 (285)
T 3dpi_A           91 A   91 (285)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=98.37  E-value=5.8e-08  Score=90.40  Aligned_cols=58  Identities=14%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             eEEeeeccccccccccccceecc-----ccccccccccc-EEEEeecccccCCh-hhHHHHHHHHHHhh
Q psy7151          36 VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELR-LYGLQFHPEVDLTN-EGRTMLKNFLFDVC   97 (188)
Q Consensus        36 ~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~-i~GVQFHPE~~~t~-~G~~il~nFl~~i~   97 (188)
                      .||+.|++.  ++  +.++.+++     .++|+++++.| ++|||||||...++ .+..||+||+....
T Consensus       469 eVNs~h~q~--l~--~~GL~vsA~s~DG~IEAIE~~~~pf~vGVQfHPE~~~~p~~~~~LF~~Fv~Aa~  533 (535)
T 3nva_A          469 EVNPKYVDI--LE--DAGLVVSGISENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA  533 (535)
T ss_dssp             EECHHHHHH--HH--HTTCEEEEECTTCCEEEEECTTSSCEEEESSCGGGGCCSSSCCHHHHHHHHHHT
T ss_pred             eechHHHhh--cc--cCCeEEEEEeCCCCEEEEEeCCCCcEEEEEeCCEecCCCCChhHHHHHHHHHHH
Confidence            455555555  33  34555544     38999999887 69999999999876 48999999997643

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}

Probab=98.31  E-value=2.5e-07  Score=77.94  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhh---cCCCCCceEEEEecC
Q psy7151         101 GNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMR---HPFPGPGLAIRVICG  158 (188)
Q Consensus       101 ~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~---~~~p~~~L~v~~~~~  158 (188)
                      ++++++..++.++.|||++|...+.-..++|+|||+||++++.   ..+++. +++.|+..
T Consensus         5 ~~~~~~~~~~~l~~~l~~~v~~~~~~~vvv~lSGGiDSsv~a~l~~~~~~~~-~av~~~~~   64 (249)
T 3fiu_A            5 KDFSPKEYSQKLVNWLSDSCMNYPAEGFVIGLSGGIDSAVAASLAVKTGLPT-TALILPSD   64 (249)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHTTTCSEEEEECCSSHHHHHHHHHHHHTTSCE-EEEECCCT
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4689999999999999999975543334449999999999993   344544 48888854

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=98.24  E-value=1.6e-07  Score=87.73  Aligned_cols=38  Identities=21%  Similarity=0.367  Sum_probs=33.8

Q ss_pred             cccccccccccEE-EEeecccccCChh-hHHHHHHHHHHh
Q psy7151          59 PLKDFHKDELRLY-GLQFHPEVDLTNE-GRTMLKNFLFDV   96 (188)
Q Consensus        59 pi~Ai~~~~~~i~-GVQFHPE~~~t~~-G~~il~nFl~~i   96 (188)
                      .++|+++.+.|+| |||||||+..++. |..||+||+..+
T Consensus       497 ~VEaie~~~~p~flGVQFHPE~~~~p~~g~~LF~~Fv~aa  536 (545)
T 1s1m_A          497 LVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA  536 (545)
T ss_dssp             CEEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHH
T ss_pred             ceEEEEeCCCCEEEEEeCCCCCCCCCCChHHHHHHHHHHH
Confidence            4889999988887 9999999998886 899999999764

>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*

Probab=98.23  E-value=2.9e-07  Score=77.73  Aligned_cols=76  Identities=12%  Similarity=0.057  Sum_probs=49.6

Q ss_pred             eecCCeEEecCcccCCcce-------------------eEEeeeccccccccccccceecc-----cccccccccccEEE
Q psy7151          17 TLRPDLIESASHLASNKAD-------------------VIKTHHNDSPLIRALREQGKVIE-----PLKDFHKDELRLYG   72 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~-------------------~V~s~H~~~~Lf~~lp~~s~vi~-----pi~Ai~~~~~~i~G   72 (188)
                      .++|+.|.+.+.+.+|...                   .++++|++.  + .+|++..+++     +++|+++.+ ++||
T Consensus        97 ~~lGG~V~~~~~~e~G~~~v~~~~~~~~~~l~g~~~~~~v~~~H~~~--v-~lp~~~~vlA~s~~~~~~a~~~~~-~~~G  172 (250)
T 3m3p_A           97 KAMGGEVTDSPHAEIGWVRAWPQHVPQALEWLGTWDELELFEWHYQT--F-SIPPGAVHILRSEHCANQAYVLDD-LHIG  172 (250)
T ss_dssp             HHTTCCEEEEEEEEEEEEEEEECSSHHHHHHHSCSSCEEEEEEEEEE--E-CCCTTEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             HHhCCEEEeCCCCceeeEEEEEecCCCCcccccCCCccEEEEEccce--e-ecCCCCEEEEEeCCCCEEEEEECC-eeEE
Confidence            4678888877766666432                   234445544  3 4555554433     578888765 6999


Q ss_pred             EeecccccCChhhHHHHHHHHHHhh
Q psy7151          73 LQFHPEVDLTNEGRTMLKNFLFDVC   97 (188)
Q Consensus        73 VQFHPE~~~t~~G~~il~nFl~~i~   97 (188)
                      ||||||+. .+.+..++++|-..+.
T Consensus       173 vQfHPE~~-~~~~~~~l~~~~~~l~  196 (250)
T 3m3p_A          173 FQCHIEMQ-AHMVREWCSISPEELK  196 (250)
T ss_dssp             ESSCTTCC-HHHHHHHHHHCGGGST
T ss_pred             EEeCCcCC-HHHHHHHHHhhHHHHh
Confidence            99999985 3456777777765554

>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}

Probab=98.13  E-value=9.1e-07  Score=73.18  Aligned_cols=74  Identities=11%  Similarity=0.130  Sum_probs=47.2

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeec--cccccccccc----------------cceecc-----cccccccccccEEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHN--DSPLIRALRE----------------QGKVIE-----PLKDFHKDELRLYG   72 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~--~~~Lf~~lp~----------------~s~vi~-----pi~Ai~~~~~~i~G   72 (188)
                      +.++|+.+.+.+.+.+|... |.....  .++||+++|.                +..+++     +++|+.+. .++||
T Consensus        98 ~~~~Gg~v~~~~~~~~G~~~-v~~~~~~~~~~l~~~~~~~~~v~~~H~~~~~lp~~~~vla~s~~~~~~a~~~~-~~v~g  175 (236)
T 3l7n_A           98 GVAYGADYLHSPKKEIGNYL-ISLTEAGKMDSYLSDFSDDLLVGHWHGDMPGLPDKAQVLAISQGCPRQIIKFG-PKQYA  175 (236)
T ss_dssp             HHHTTCCCEEEEEEEEEEEE-EEECTTGGGCGGGTTSCSEEEEEEEEEEECCCCTTCEEEEECSSCSCSEEEEE-TTEEE
T ss_pred             HHHhCCEEecCCCceeeeEE-EEEccCcccChHHhcCCCCcEEEEecCCcccCCChheEEEECCCCCEEEEEEC-CCEEE
Confidence            34678888887777777543 321111  2446665552                222221     36677765 48999


Q ss_pred             EeecccccCChhhHHHHHHHHHHh
Q psy7151          73 LQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        73 VQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      +|||||..     ..+++||+...
T Consensus       176 vQfHPE~~-----~~~~~~~~~~~  194 (236)
T 3l7n_A          176 FQCHLEFT-----PELVAALIAQE  194 (236)
T ss_dssp             ESSBSSCC-----HHHHHHHHHHC
T ss_pred             EEeCCCCC-----HHHHHHHHHhh
Confidence            99999996     78999998753

>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1

Probab=98.11  E-value=7.2e-07  Score=71.64  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=26.9

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHH---HHHHHH
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTML---KNFLFD   95 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il---~nFl~~   95 (188)
                      ++++.+.+ ++||+|||||++. +.|.+||   +||+..
T Consensus       163 ~~~~~~~~-~i~gvQfHPE~~~-~~g~~l~~~~~~F~~~  199 (200)
T 1ka9_H          163 FTALLAKE-NLLAPQFHPEKSG-KAGLAFLALARRYFEV  199 (200)
T ss_dssp             EEEEEECS-SEEEESSCTTSSH-HHHHHHHHHHHHHC--
T ss_pred             EEEEEeeC-CEEEEecCCCcCc-cchhHHHHHHHHHHhh
Confidence            45555544 8999999999996 8999999   999853

>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1

Probab=98.09  E-value=1.4e-06  Score=72.43  Aligned_cols=30  Identities=30%  Similarity=0.416  Sum_probs=23.9

Q ss_pred             cccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          59 PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        59 pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +++|+++.+  +||+|||||+..     .+++||+..
T Consensus       170 ~iea~~~~~--i~gvQfHPE~~~-----~~~~~~~~~  199 (239)
T 1o1y_A          170 ENQGFVYGK--AVGLQFHIEVGA-----RTMKRWIEA  199 (239)
T ss_dssp             SCSEEEETT--EEEESSBSSCCH-----HHHHHHHHH
T ss_pred             CEEEEEECC--EEEEEeCccCCH-----HHHHHHHHH
Confidence            377888753  999999999953     489999864

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A

Probab=98.00  E-value=2.2e-06  Score=74.05  Aligned_cols=51  Identities=22%  Similarity=0.225  Sum_probs=41.7

Q ss_pred             cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCC---CCCceEEEEe
Q psy7151         103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPF---PGPGLAIRVI  156 (188)
Q Consensus       103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~---p~~~L~v~~~  156 (188)
                      |+|++++++++++||++++++++++   ++|||+||++++..+.   ..+..++.+.
T Consensus         1 ~~~~~~~~~~~~~ir~~v~~~kvlv---alSGGvDSsvla~ll~~~~g~~v~av~vd   54 (308)
T 2dpl_A            1 MDWGRFVEEKVREIRETVGDSKAII---ALSGGVDSSTAAVLAHKAIGDRLHAVFVN   54 (308)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTSCEEE---ECCSSHHHHHHHHHHHHHHGGGEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCEEE---EEeChHHHHHHHHHHHHhhCCCEEEEEEc
Confidence            6899999999999999999989988   9999999999994332   2345566554

>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*

Probab=97.99  E-value=5.2e-06  Score=66.13  Aligned_cols=56  Identities=18%  Similarity=0.148  Sum_probs=38.5

Q ss_pred             ceeEEeeeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          34 ADVIKTHHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        34 ~~~V~s~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ...+++.|++.  ++.+|++..+.+    .++|+++  .+++|+|||||...+   ..+++||+..+
T Consensus       128 ~~~~~~~h~~~--v~~~~~~~~v~a~~d~~~~a~~~--~~~~gvQfHPE~~~~---~~l~~~fl~~~  187 (196)
T 2nv0_A          128 PFTGVFIRAPH--ILEAGENVEVLSEHNGRIVAAKQ--GQFLGCSFHPELTED---HRVTQLFVEMV  187 (196)
T ss_dssp             CEEEEEESCCE--EEEECTTCEEEEEETTEEEEEEE--TTEEEESSCTTSSSC---CHHHHHHHHHH
T ss_pred             ceEEEEEecce--ecccCCCcEEEEEECCEEEEEEE--CCEEEEEECCccCCc---hHHHHHHHHHH
Confidence            33455557665  666666655443    2567765  589999999998654   48999999754

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=97.99  E-value=1.7e-06  Score=80.86  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=34.2

Q ss_pred             cccccccccccEE-EEeecccccCChh-hHHHHHHHHHHhh
Q psy7151          59 PLKDFHKDELRLY-GLQFHPEVDLTNE-GRTMLKNFLFDVC   97 (188)
Q Consensus        59 pi~Ai~~~~~~i~-GVQFHPE~~~t~~-G~~il~nFl~~i~   97 (188)
                      .++|+++.+.|+| |||||||...++. |..||+||+..+.
T Consensus       504 ~VeaIe~~~~p~fvGVQFHPE~~~~p~~g~~LF~~Fv~aa~  544 (550)
T 1vco_A          504 LVEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAAL  544 (550)
T ss_dssp             CEEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCEEEEEEeCCccCCCCCChHHHHHHHHHHHH
Confidence            4789999888988 9999999998875 9999999997643

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}

Probab=97.97  E-value=4.6e-06  Score=69.66  Aligned_cols=55  Identities=18%  Similarity=0.243  Sum_probs=44.6

Q ss_pred             CCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC----CCCCceEEEEecCC
Q psy7151         101 GNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP----FPGPGLAIRVICGE  159 (188)
Q Consensus       101 ~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~----~p~~~L~v~~~~~~  159 (188)
                      +..+++.+++.++++||++ +.+++++   |+|||+||++++..+    .+.+.+++.|+...
T Consensus         2 ~~~~~~~~~~~l~~~i~~~-~~~~vvv---~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~   60 (257)
T 2e18_A            2 RILDYDKVIERILEFIREK-GNNGVVI---GISGGVDSATVAYLATKALGKEKVLGLIMPYFE   60 (257)
T ss_dssp             CEECHHHHHHHHHHHHHHH-CTTCEEE---ECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSC
T ss_pred             CcCCHHHHHHHHHHHHHHh-CCCcEEE---EecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            3467889999999999999 7788888   999999999998322    23578899988654

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0

Probab=97.97  E-value=2.4e-06  Score=71.98  Aligned_cols=56  Identities=18%  Similarity=0.235  Sum_probs=44.1

Q ss_pred             cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhc---CCCCCceEEEEecC
Q psy7151         103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRH---PFPGPGLAIRVICG  158 (188)
Q Consensus       103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~---~~p~~~L~v~~~~~  158 (188)
                      .+++...+.++.|||+++...+.-..++|+|||+||++++..   .+..+.+++.|+..
T Consensus         4 ~~~~~~~~~l~~~l~d~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~   62 (249)
T 3p52_A            4 MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQ   62 (249)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCSEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSC
T ss_pred             cCHHHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            467889999999999999875544445599999999999932   23467899998864

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.94  E-value=4.5e-06  Score=77.62  Aligned_cols=34  Identities=29%  Similarity=0.567  Sum_probs=27.8

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ++|++.  .++||+|||||.+ .+.|.+||+||+..-
T Consensus       182 i~ai~~--~~i~GvQFHPE~s-~~~g~~l~~~Fl~~~  215 (555)
T 1jvn_A          182 IAAVNK--NNIFATQFHPEKS-GKAGLNVIENFLKQQ  215 (555)
T ss_dssp             EEEEEE--TTEEEESSBGGGS-HHHHHHHHHHHHTTC
T ss_pred             EEEEEe--CCEEEEEeCcEec-ChhHHHHHHHHHhcc
Confidence            567773  5899999999975 367999999999753

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A

Probab=97.90  E-value=1.9e-06  Score=72.54  Aligned_cols=54  Identities=22%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             CcccchHHHHHHHHHHHHhCC---CcEEEEeeccccCCChhhHhhc---CCCCCceEEEEecC
Q psy7151         102 NFTLKSREEELIKYVKETVGN---MKVLVRKLGLDLGLTPEVVMRH---PFPGPGLAIRVICG  158 (188)
Q Consensus       102 ~W~~~~~ie~iI~~IRe~Vg~---~kVi~~~~GlSGGvDSavva~~---~~p~~~L~v~~~~~  158 (188)
                      +++++..++.++.+||+++..   +++++   |+|||+||++++..   +++.+.+++.|+..
T Consensus         2 ~~~~~~~~~~l~~~l~~~v~~~~~~~vvv---~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~   61 (268)
T 1xng_A            2 QKDYQKLIVYLCDFLEKEVQKRGFKKVVY---GLSGGLDSAVVGVLCQKVFKENAHALLMPSS   61 (268)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTTCCCEEE---ECCSSHHHHHHHHHHHHHHGGGEEEEECCCS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhCCCCEEE---EccCcHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            356788999999999999863   45666   99999999999832   23456889998865

>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.86  E-value=1.3e-05  Score=63.19  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             cccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          47 IRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        47 f~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +..+|++..+.+    .++|+++.  ++||+|||||...  ++ .|++||+..
T Consensus       141 v~~l~~~~~~~a~~~~~~~a~~~~--~~~gvQfHPE~~~--~~-~l~~~f~~~  188 (191)
T 2ywd_A          141 FRRLGEGVEVLARLGDLPVLVRQG--KVLASSFHPELTE--DP-RLHRYFLEL  188 (191)
T ss_dssp             EEEECTTCEEEEEETTEEEEEEET--TEEEESSCGGGSS--CC-HHHHHHHHH
T ss_pred             eeccCCCcEEEEEECCEEEEEEEC--CEEEEEeCCCCCC--Cc-HHHHHHHHH
Confidence            445555544432    36788764  6999999999754  34 999999965

>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1

Probab=97.86  E-value=8e-06  Score=66.62  Aligned_cols=50  Identities=20%  Similarity=0.286  Sum_probs=35.4

Q ss_pred             eeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          40 HHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        40 ~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      .|++.  ++.+|++..+.+    .++|+++  .+++|+|||||...+   ..+++||+..+
T Consensus       156 ~h~~~--v~~l~~~~~v~a~sdg~~ea~~~--~~i~GvQfHPE~~~~---~~l~~~fl~~~  209 (219)
T 1q7r_A          156 IRAPH--IVEAGDGVDVLATYNDRIVAARQ--GQFLGCSFHPELTDD---HRLMQYFLNMV  209 (219)
T ss_dssp             SSCCE--EEEECTTCEEEEEETTEEEEEEE--TTEEEESSCGGGSSC---CHHHHHHHHHH
T ss_pred             Eecce--eeccCCCcEEEEEcCCEEEEEEE--CCEEEEEECcccCCC---HHHHHHHHHHH
Confidence            35554  556666555433    3667776  589999999999753   58999999764

>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}

Probab=97.81  E-value=1.5e-05  Score=64.45  Aligned_cols=52  Identities=13%  Similarity=0.089  Sum_probs=34.7

Q ss_pred             EEeeeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          37 IKTHHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        37 V~s~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +++.|++.  ++.+|++..+.+    .++|+++  .++||+|||||...++   .+++||+..
T Consensus       151 ~~~~h~~~--v~~~~~~~~v~a~~d~~~~a~~~--~~i~GvQfHPE~~~~~---~l~~~fl~~  206 (208)
T 2iss_D          151 AIFIRAPR--IVETGKNVEILATYDYDPVLVKE--GNILACTFHPELTDDL---RLHRYFLEM  206 (208)
T ss_dssp             EEESSCCE--EEEECSSCEEEEEETTEEEEEEE--TTEEEESSCGGGSSCC---HHHHHHHTT
T ss_pred             EEEEeCcc--cccCCCCcEEEEEECCEEEEEEE--CCEEEEEeCCCcCCcH---HHHHHHHHH
Confidence            33345444  444555544433    3667765  4899999999997653   899999853

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=97.74  E-value=6.8e-06  Score=76.60  Aligned_cols=55  Identities=11%  Similarity=0.009  Sum_probs=41.3

Q ss_pred             cchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcC----CCCCceEEEEecCC
Q psy7151         105 LKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHP----FPGPGLAIRVICGE  159 (188)
Q Consensus       105 ~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~----~p~~~L~v~~~~~~  159 (188)
                      .+++.+.++.+||+++...+....++|+||||||+|+|.++    .+.+.+++-|+...
T Consensus       306 ~~~~~~~~~~~l~~~~~~~g~~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~  364 (590)
T 3n05_A          306 DEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKY  364 (590)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCC
Confidence            46788999999999996543222333999999999999432    34688999998643

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=97.53  E-value=1.8e-05  Score=73.84  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh----hcCCCCCceEEEEecCC
Q psy7151         107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM----RHPFPGPGLAIRVICGE  159 (188)
Q Consensus       107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva----~~~~p~~~L~v~~~~~~  159 (188)
                      ++.+.++-++|+++...+..+.++|||||+||++++    .+..+++++++.||+..
T Consensus       282 ~~~~a~~~gl~dy~~k~g~~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~  338 (565)
T 4f4h_A          282 QVYRALVLGVRDYIGKNGFPGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRY  338 (565)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccc
Confidence            455677889999999877777777999999999988    45568999999999844

>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G

Probab=97.24  E-value=0.00014  Score=59.26  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=25.2

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ++|++.  .+++|+|||||...+   .+|++||+..+
T Consensus       182 ~~a~~~--~~v~gvQfHPE~~~~---~~l~~~Fl~~~  213 (227)
T 2abw_A          182 IAAVEQ--NNCLGTVFHPELLPH---TAFQQYFYEKV  213 (227)
T ss_dssp             EEEEEE--TTEEEESSCGGGSSC---CHHHHHHHHHH
T ss_pred             eEEEEE--CCEEEEEECCeeCCC---cHHHHHHHHHH
Confidence            346654  589999999999865   39999999764

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=96.84  E-value=0.00012  Score=68.10  Aligned_cols=89  Identities=52%  Similarity=0.786  Sum_probs=52.8

Q ss_pred             CeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCChhhHHHH
Q psy7151          10 QTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTNEGRTML   89 (188)
Q Consensus        10 ~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il   89 (188)
                      ..++++||.|+|.++....  .|.+..++++|+-.++-...  ...++.|+..+.+.+                      
T Consensus       361 ~~~la~Gt~y~D~ies~~~--~g~~~~iks~~n~~gl~~~~--~~~li~PL~~l~K~E----------------------  414 (556)
T 3uow_A          361 KTFLLQGTLYPDIIESKCS--KNLSDTIKTHHNVGGLPKNL--KFKLFEPFKYLFKDD----------------------  414 (556)
T ss_dssp             GEEEECCCCHHHHHHHSCC---------------------C--CCEEECTTTTCCHHH----------------------
T ss_pred             ccccccCccChHHHhhccc--ccccceeccccccccccccc--ccceEeecccCcHHH----------------------
Confidence            3799999999999998763  36677888766644332221  344667776544321                      


Q ss_pred             HHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCch
Q psy7151          90 KNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEER  161 (188)
Q Consensus        90 ~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~  161 (188)
                                                |           +.+|...|++..++.++|||+|+|++|+||.=++
T Consensus       415 --------------------------V-----------r~la~~lGlp~~~~~r~P~p~p~la~Ri~g~it~  449 (556)
T 3uow_A          415 --------------------------V-----------KTLSRELNLPEEITNRHPFPGPGLAIRVIGEINK  449 (556)
T ss_dssp             --------------------------H-----------HHHHHTTTCCHHHHHCCCCCTTTTTTTBCSSCCH
T ss_pred             --------------------------H-----------HHHHHHcCCCHHHhCCCCCCCCCccccccCccCH
Confidence                                      1           4457888899999999999999999999974343

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=96.80  E-value=0.0002  Score=67.50  Aligned_cols=36  Identities=8%  Similarity=-0.109  Sum_probs=27.8

Q ss_pred             chHHHHHHHHHHHHhCC---CcEEEEeeccccCCChhhHhhc
Q psy7151         106 KSREEELIKYVKETVGN---MKVLVRKLGLDLGLTPEVVMRH  144 (188)
Q Consensus       106 ~~~ie~iI~~IRe~Vg~---~kVi~~~~GlSGGvDSavva~~  144 (188)
                      +.+...++.|||+++..   ++|++   |+||||||+|+|.+
T Consensus       284 ~~~~~~~~~~l~d~~~~~g~~~vvl---glSGGvDSsv~A~L  322 (634)
T 3ilv_A          284 FEFWEATSLGLFDYMRKSRSKGFVL---SLSGGADSSACAIM  322 (634)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSEEE---ECCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEE---EccCCHHHHHHHHH
Confidence            45666778999997764   45666   99999999998854

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=96.79  E-value=0.00033  Score=66.60  Aligned_cols=52  Identities=12%  Similarity=0.080  Sum_probs=34.3

Q ss_pred             hHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh---hcCC------CCCceEEEEecC
Q psy7151         107 SREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM---RHPF------PGPGLAIRVICG  158 (188)
Q Consensus       107 ~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva---~~~~------p~~~L~v~~~~~  158 (188)
                      +..+.++.+||+++...+....++|+||||||+|++   +.++      +++.+|+.||+.
T Consensus       343 ~~~~~~~~~l~~~l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~  403 (680)
T 3sdb_A          343 EAYNIQVSGLEQRLRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGF  403 (680)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC-
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCC
Confidence            445556677777666443333334999999999754   2222      468999999974

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=96.53  E-value=0.00012  Score=70.06  Aligned_cols=122  Identities=66%  Similarity=1.078  Sum_probs=82.8

Q ss_pred             CCCCCCCeeeEeeeecCCeEEecCcccCCcceeEEeeeccccccccccccceecccccccccccccEEEEeecccccCCh
Q psy7151           4 LKLDPNQTLLCQGTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKDFHKDELRLYGLQFHPEVDLTN   83 (188)
Q Consensus         4 ~~~~~~~~~~~~g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~vi~pi~Ai~~~~~~i~GVQFHPE~~~t~   83 (188)
                      ++.+.+..++++|+.++|.+++......|.+..++++|+..++...++....++.|+..+.+++                
T Consensus       359 ~g~~~~~~~LatG~~~~D~iEs~~~~l~~g~~~iks~~nv~g~~~~~~~~~~~i~PL~~L~K~E----------------  422 (697)
T 2vxo_A          359 MNLKPEEVFLAQGTLRPDLIESASLVASGKAELIKTHHNDTELIRKLREEGKVIEPLKDFHKDE----------------  422 (697)
T ss_dssp             TCCCTTSEEEECCCSSCCSBCCHHHHHHSCCCGGGSCCSSCHHHHHHHHTTCEECGGGGSCHHH----------------
T ss_pred             cCCCcccEEEEEeccChhhhhhhhhhhhcCccccccccccchhhHHhccCCEEEEecccCCHHH----------------
Confidence            4555557799999999999987653333445566666666655554444455677877654321                


Q ss_pred             hhHHHHHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhcCCCCCceEEEEecCCchhh
Q psy7151          84 EGRTMLKNFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRHPFPGPGLAIRVICGEERYI  163 (188)
Q Consensus        84 ~G~~il~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~  163 (188)
                                                      |           +.+|..-|++..++.+.|+|||+|++|+.+.++...
T Consensus       423 --------------------------------V-----------r~la~~lGlP~~i~~r~Ps~gpgL~~r~~~~de~~~  459 (697)
T 2vxo_A          423 --------------------------------V-----------RILGRELGLPEELVSRHPFPGPGLAIRVICAEEPYI  459 (697)
T ss_dssp             --------------------------------H-----------HHHHHHTTCCHHHHTCCCCCTTGGGGGBCCBSSCCC
T ss_pred             --------------------------------H-----------HHHHHHcCCCcceeeCCCCCCCccccCccccchhhh
Confidence                                            1           223556679999999999999999999877776665


Q ss_pred             hhhhhhhhhHHHHHhhhhhhh
Q psy7151         164 EKDYSETQVLVKIIVEYDQMF  184 (188)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~  184 (188)
                      ..++.++..+++-..++...+
T Consensus       460 g~~Y~~ld~iL~~~~~~~~el  480 (697)
T 2vxo_A          460 CKDFPETNNILKIVADFSASV  480 (697)
T ss_dssp             CTTHHHHHHHHHHHHTHHHHT
T ss_pred             cCCHHHHHHHHHHHhhhHHHH
Confidence            566777777776666554444

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*

Probab=94.24  E-value=0.058  Score=46.02  Aligned_cols=35  Identities=11%  Similarity=0.222  Sum_probs=26.3

Q ss_pred             cchHHHHHHHHHHHH--hC-CCcEEEEeeccccCCChhhHh
Q psy7151         105 LKSREEELIKYVKET--VG-NMKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       105 ~~~~ie~iI~~IRe~--Vg-~~kVi~~~~GlSGGvDSavva  142 (188)
                      |..+.+.+.++|+++  +. .+++++   |+|||+||++++
T Consensus         4 ~~~~~~~~~~~i~~~~l~~~~~~vlv---a~SGG~DS~~Ll   41 (317)
T 1wy5_A            4 ESRVIRKVLALQNDEKIFSGERRVLI---AFSGGVDSVVLT   41 (317)
T ss_dssp             HHHHHHHHHHHHHHHCSCSSCCEEEE---ECCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCEEEE---EecchHHHHHHH
Confidence            345667777888876  33 456776   999999999988

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=92.33  E-value=0.037  Score=50.74  Aligned_cols=34  Identities=18%  Similarity=0.119  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHHHhC-----CCcEEEEeeccccCCChhhHhh
Q psy7151         107 SREEELIKYVKETVG-----NMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       107 ~~ie~iI~~IRe~Vg-----~~kVi~~~~GlSGGvDSavva~  143 (188)
                      +.++++.+.+++.|.     +..+.+   ++|||+||+++|.
T Consensus       221 ~~~~~l~~~L~~aV~~rl~sd~~vgv---~LSGGlDSS~vaa  259 (513)
T 1jgt_A          221 EAVAAVRAALEKAVAQRVTPGDTPLV---VLSGGIDSSGVAA  259 (513)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCCEE---ECCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcEEE---ECCCcHHHHHHHH
Confidence            344444444444333     446666   9999999999984

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2

Probab=91.65  E-value=0.14  Score=40.79  Aligned_cols=18  Identities=11%  Similarity=0.307  Sum_probs=15.1

Q ss_pred             CcEEEEeeccccCCChhhHhh
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~  143 (188)
                      +++++   +.|||+||+++..
T Consensus        45 ~~v~V---a~SGGkDS~vLL~   62 (215)
T 1sur_A           45 GEYVL---SSSFGIQAAVSLH   62 (215)
T ss_dssp             SEEEE---ECCCCTTHHHHHH
T ss_pred             CCEEE---EecCCHHHHHHHH
Confidence            46666   9999999999983

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=91.51  E-value=0.063  Score=48.99  Aligned_cols=28  Identities=18%  Similarity=0.097  Sum_probs=18.9

Q ss_pred             HHHHHhC-CCcEEEEeeccccCCChhhHhhcC
Q psy7151         115 YVKETVG-NMKVLVRKLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       115 ~IRe~Vg-~~kVi~~~~GlSGGvDSavva~~~  145 (188)
                      -++.+.. +..+.+   .+|||+||+++|..+
T Consensus       230 aV~~rl~sd~~v~v---~LSGGlDSs~vaala  258 (503)
T 1q15_A          230 PLEDLAPRFDTVGI---PLSGGLDSSLVTALA  258 (503)
T ss_dssp             HHHHHGGGCSEEEE---ECCSSHHHHHHHHHH
T ss_pred             HHHHHHhCCCcEEE---ECCCCHHHHHHHHHH
Confidence            3444332 445666   999999999998433

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}

Probab=91.47  E-value=0.046  Score=43.16  Aligned_cols=32  Identities=9%  Similarity=0.030  Sum_probs=20.8

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEec
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVIC  157 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~  157 (188)
                      +++++   ++|||+||++++..+-.  .+..++.+..
T Consensus         4 ~~v~v---~lSGG~DS~~ll~ll~~~~~~v~~~~~~~   37 (219)
T 3bl5_A            4 EKAIV---VFSGGQDSTTCLLWALKEFEEVETVTFHY   37 (219)
T ss_dssp             CEEEE---ECCSSHHHHHHHHHHHHHCSEEEEEEEES
T ss_pred             CCEEE---EccCcHHHHHHHHHHHHcCCceEEEEEeC
Confidence            45665   99999999999833221  2355665543

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*

Probab=91.46  E-value=0.059  Score=47.72  Aligned_cols=31  Identities=19%  Similarity=0.092  Sum_probs=21.8

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      .+|++   |+|||+||++++.++-.  -.+.++.|.
T Consensus        18 ~kVvV---a~SGGvDSsv~a~lL~~~G~~V~~v~~~   50 (380)
T 2der_A           18 KKVIV---GMSGGVDSSVSAWLLQQQGYQVEGLFMK   50 (380)
T ss_dssp             CEEEE---ECCSCSTTHHHHHHHHTTCCEEEEEEEE
T ss_pred             CEEEE---EEEChHHHHHHHHHHHHcCCeEEEEEEE
Confidence            45666   99999999999944332  246666664

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1

Probab=89.66  E-value=0.083  Score=42.60  Aligned_cols=33  Identities=12%  Similarity=0.116  Sum_probs=21.2

Q ss_pred             CcEEEEeeccccCCChhhHhhcCCC--CCceEEEEecC
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVICG  158 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~~~  158 (188)
                      +++++   ++|||+||++++..+-.  .+..++.+..+
T Consensus         3 ~kvvv---~lSGG~DS~~~l~ll~~~~~~v~av~~~~g   37 (232)
T 2pg3_A            3 KRAVV---VFSGGQDSTTCLIQALQDYDDVHCITFDYG   37 (232)
T ss_dssp             CEEEE---ECCSSHHHHHHHHHHHHHCSEEEEEEEESS
T ss_pred             CCEEE---EecCcHHHHHHHHHHHHcCCCEEEEEEECC
Confidence            34555   99999999998832211  34566665543

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}

Probab=89.26  E-value=0.066  Score=47.24  Aligned_cols=33  Identities=18%  Similarity=0.067  Sum_probs=22.7

Q ss_pred             CcEEEEeeccccCCChhhHhhcCC--CCCceEEEEecC
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHPF--PGPGLAIRVICG  158 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~~--p~~~L~v~~~~~  158 (188)
                      .+|++   |+|||+||+|++.++-  .-.+.++.|...
T Consensus        10 ~kVlV---a~SGGvDSsv~a~lL~~~G~~V~~v~~~~~   44 (376)
T 2hma_A           10 TRVVV---GMSGGVDSSVTALLLKEQGYDVIGIFMKNW   44 (376)
T ss_dssp             SEEEE---ECCSSHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             CeEEE---EEeCHHHHHHHHHHHHHcCCcEEEEEEECC
Confidence            45666   9999999999994332  134667776543

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}

Probab=87.29  E-value=0.12  Score=41.27  Aligned_cols=18  Identities=17%  Similarity=0.004  Sum_probs=14.6

Q ss_pred             cEEEEeeccccCCChhhHhhc
Q psy7151         124 KVLVRKLGLDLGLTPEVVMRH  144 (188)
Q Consensus       124 kVi~~~~GlSGGvDSavva~~  144 (188)
                      ++++   ++|||+||++++..
T Consensus         8 kv~v---~~SGG~DS~~ll~l   25 (203)
T 3k32_A            8 DVHV---LFSGGKDSSLSAVI   25 (203)
T ss_dssp             EEEE---ECCCSHHHHHHHHH
T ss_pred             eEEE---EEECcHHHHHHHHH
Confidence            4555   99999999999843

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1

Probab=87.02  E-value=0.14  Score=45.58  Aligned_cols=16  Identities=19%  Similarity=0.127  Sum_probs=13.4

Q ss_pred             eccccCCChhhHhhcC
Q psy7151         130 LGLDLGLTPEVVMRHP  145 (188)
Q Consensus       130 ~GlSGGvDSavva~~~  145 (188)
                      +|+|||+||++++..+
T Consensus       192 valSGGvDS~vll~ll  207 (413)
T 2c5s_A          192 VLLSGGIDSPVAAYLT  207 (413)
T ss_dssp             EECCSSSHHHHHHHHH
T ss_pred             EEeCCCChHHHHHHHH
Confidence            4999999999999443

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=86.41  E-value=0.44  Score=39.25  Aligned_cols=28  Identities=7%  Similarity=0.253  Sum_probs=19.0

Q ss_pred             HHHHHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151         111 ELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       111 ~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva  142 (188)
                      ++++|.-+..+ +++++   +.|||+||+|+.
T Consensus        35 ~~l~~a~~~~~-~~v~v---a~SGG~DS~vLL   62 (252)
T 2o8v_A           35 GRVAWALDNLP-GEYVL---SSSFGIQAAVSL   62 (252)
T ss_dssp             HHHHHHHTTSC-SCEEE---ECCCSTTHHHHH
T ss_pred             HHHHHHHHHcC-CCEEE---EeCCCHHHHHHH
Confidence            34444444443 45666   999999999998

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=86.32  E-value=0.088  Score=48.29  Aligned_cols=44  Identities=36%  Similarity=0.735  Sum_probs=30.9

Q ss_pred             ccccCCChhhHhhcCCCCCceEEEEecCCchhhhhhhhhhhhHH
Q psy7151         131 GLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVLV  174 (188)
Q Consensus       131 GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~~~~~~~~~~~~  174 (188)
                      +..-|++..++.++|+++|.|++|+++.-++...+...+...++
T Consensus       388 a~~lglp~~i~~~~P~~~p~La~ri~g~~t~~~l~~~~~~d~~l  431 (525)
T 1gpm_A          388 GLELGLPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIF  431 (525)
T ss_dssp             HHHTTCCHHHHTSCCCCTTGGGGTBCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHhcccCCCCchhhcccccCCcCHHHHHHHHHHHHHH
Confidence            55567999999999999999999988744444444444444443

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=86.08  E-value=0.38  Score=44.40  Aligned_cols=33  Identities=21%  Similarity=0.180  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHHhC-CCcEEEEeeccccCCChhhHh
Q psy7151         107 SREEELIKYVKETVG-NMKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       107 ~~ie~iI~~IRe~Vg-~~kVi~~~~GlSGGvDSavva  142 (188)
                      .+.+.+.+-++.++. +..+.+   .+|||+||+++|
T Consensus       210 ~lr~~L~~aV~~rl~sdvpvgv---~LSGGlDSS~ia  243 (553)
T 1ct9_A          210 ELRQALEDSVKSHLMSDVPYGV---LLSGGLDSSIIS  243 (553)
T ss_dssp             HHHHHHHHHHHHHTCCSSCEEE---ECCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCceEE---eCCCCccHHHHH
Confidence            344444555666554 345665   899999999998

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1

Probab=85.35  E-value=0.17  Score=45.73  Aligned_cols=32  Identities=19%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             CCcEEEEeeccccCCChhhHhhcCCC--CCceEEEEe
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRVI  156 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~~  156 (188)
                      ..+|++   ++|||+||+|++..+-.  ..++|+-+-
T Consensus        14 ~~KVVV---A~SGGlDSSv~a~~Lke~G~eViavt~d   47 (421)
T 1vl2_A           14 KEKVVL---AYSGGLDTSVILKWLCEKGFDVIAYVAN   47 (421)
T ss_dssp             CCEEEE---ECCSSHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cCCEEE---EeCCcHHHHHHHHHHHHCCCeEEEEEEE
Confidence            345666   99999999999954322  234555543

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1

Probab=84.25  E-value=0.4  Score=42.82  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=18.9

Q ss_pred             HHHHHhCC-CcEEEEeeccccCCChhhHhh
Q psy7151         115 YVKETVGN-MKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       115 ~IRe~Vg~-~kVi~~~~GlSGGvDSavva~  143 (188)
                      .+++.+.. +++++   |+|||+||++++.
T Consensus         5 ~l~~~l~~~~~vlV---a~SGG~DS~~Ll~   31 (433)
T 1ni5_A            5 TLNRQLLTSRQILV---AFSGGLDSTVLLH   31 (433)
T ss_dssp             HHHHHHTTCSEEEE---ECCSBHHHHHHHH
T ss_pred             hHHHhcCCCCEEEE---EEcchHHHHHHHH
Confidence            34555553 45666   9999999999883

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=84.20  E-value=0.16  Score=46.23  Aligned_cols=43  Identities=37%  Similarity=0.604  Sum_probs=30.0

Q ss_pred             ccccCCChhhHhhcCCCCCceEEEEecCCchhhhhhhhhhhhH
Q psy7151         131 GLDLGLTPEVVMRHPFPGPGLAIRVICGEERYIEKDYSETQVL  173 (188)
Q Consensus       131 GlSGGvDSavva~~~~p~~~L~v~~~~~~~~~~~~~~~~~~~~  173 (188)
                      +..-|++...+.++|||+++|++|+|+.-+....+...+...+
T Consensus       366 a~~~glp~~i~~~~P~~~~~La~R~~g~~t~~~l~~~~~~d~~  408 (503)
T 2ywb_A          366 ALLLGLPDTLRLRHPFPGPGLAVRVLGEVTEERLEILRRADDI  408 (503)
T ss_dssp             HHHTTCCHHHHSCCCCCTTGGGGGBSSCCCHHHHHHHHHHHHH
T ss_pred             HHHcCCChhheecCCCCCcchhhhccccccHHHHHHHHHHHHH
Confidence            4556799999999999999999999864444333333333333

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=83.76  E-value=0.12  Score=47.40  Aligned_cols=30  Identities=57%  Similarity=1.175  Sum_probs=25.5

Q ss_pred             ccccCCChhhHhhcCCCCCceEEEEecCCc
Q psy7151         131 GLDLGLTPEVVMRHPFPGPGLAIRVICGEE  160 (188)
Q Consensus       131 GlSGGvDSavva~~~~p~~~L~v~~~~~~~  160 (188)
                      +..-|++..++.++|||+++|+.|+|+.-+
T Consensus       390 a~~lGlp~~~v~~~P~p~~~l~~R~~g~vt  419 (527)
T 3tqi_A          390 GLELGLPADLIYRHPFPGPGLAIRILGEVS  419 (527)
T ss_dssp             HHHHTCCHHHHTCCCCCTTGGGSSBCSCCC
T ss_pred             HHHcCCChhhhccCCCCCCCcceecCCccC
Confidence            556689999999999999999999997333

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}

Probab=83.50  E-value=0.5  Score=42.45  Aligned_cols=29  Identities=14%  Similarity=0.354  Sum_probs=20.0

Q ss_pred             HHHHHHHH--hC-CCcEEEEeeccccCCChhhHhh
Q psy7151         112 LIKYVKET--VG-NMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       112 iI~~IRe~--Vg-~~kVi~~~~GlSGGvDSavva~  143 (188)
                      ..+.|++.  +. .+++++   |+|||+||++++.
T Consensus         5 v~~~i~~~~l~~~~~~vlV---a~SGG~DS~~Ll~   36 (464)
T 3a2k_A            5 VRAFIHRHQLLSEGAAVIV---GVSGGPDSLALLH   36 (464)
T ss_dssp             HHHHHHHTCSSSCSSBEEE---ECCSSHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCEEEE---EEcCcHHHHHHHH
Confidence            34445553  33 456777   9999999999883

>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A

Probab=82.36  E-value=0.42  Score=41.17  Aligned_cols=23  Identities=17%  Similarity=-0.136  Sum_probs=17.7

Q ss_pred             cccccccccccEEEEeecccccC
Q psy7151          59 PLKDFHKDELRLYGLQFHPEVDL   81 (188)
Q Consensus        59 pi~Ai~~~~~~i~GVQFHPE~~~   81 (188)
                      +..++...+.+++|+|||||-..
T Consensus       218 ~~~~~~~~~~~~~~vQgHpEyd~  240 (301)
T 2vdj_A          218 GVHLVIGQEGRQVFALGHSEYSC  240 (301)
T ss_dssp             EEEEEEEGGGTEEEECSCTTCCT
T ss_pred             cceEEEecCCCEEEEECCCCCCH
Confidence            35566665668999999999864

>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}

Probab=81.76  E-value=0.48  Score=41.10  Aligned_cols=23  Identities=22%  Similarity=0.083  Sum_probs=17.8

Q ss_pred             cccccccccccEEEEeecccccC
Q psy7151          59 PLKDFHKDELRLYGLQFHPEVDL   81 (188)
Q Consensus        59 pi~Ai~~~~~~i~GVQFHPE~~~   81 (188)
                      +..++...+.+++|+|||||-..
T Consensus       229 ~~q~~~~~~~~~~~vQgHPEyd~  251 (312)
T 2h2w_A          229 GVYVVANKSERQIFVTGHPEYDR  251 (312)
T ss_dssp             EEEEEECSSSSEEEECSCTTCCT
T ss_pred             cceEEEecCCCEEEEECCCCCCH
Confidence            45566665668999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1gpma2	205	c.23.16.1 (A:3-207) GMP synthetase {Escherichia co	8e-11
d1i7qb_	192	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	6e-09
d1qdlb_	195	c.23.16.1 (B:) Anthranilate synthase GAT subunit,	1e-08
d1wl8a1	188	c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA	3e-08
d2a9va1	196	c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA	8e-08
d1a9xb2	228	c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthe	2e-05
d1k9vf_	200	c.23.16.1 (F:) GAT subunit, HisH, (or domain) of i	6e-04
d1jvna2	232	c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain	7e-04
d1gpma1	197	c.26.2.1 (A:208-404) GMP synthetase, central domai	7e-04
d1ka9h_	195	c.23.16.1 (H:) GAT subunit, HisH, (or domain) of i	0.001
d1q7ra_	202	c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus	0.003

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]} Length = 205

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

 Score = 56.5 bits (135), Expect = 8e-11
 Identities = 17/39 (43%), Positives = 23/39 (58%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTG 101
              +E R YG+QFHPEV  T +G  ML+ F+ D+C    
Sbjct: 166 MANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA 204

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

 Score = 51.0 bits (121), Expect = 6e-09
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
              D  R+ G QFHPE  LT  G  +L+  L
Sbjct: 156 VRDDRRRVCGFQFHPESILTTHGARLLEQTL 186

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 50.7 bits (120), Expect = 1e-08
 Identities = 16/34 (47%), Positives = 21/34 (61%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV 96
            H +E  +YG+QFHPE   T+ G  +L NFL  V
Sbjct: 162 IHHEEYPIYGVQFHPESVGTSLGYKILYNFLNRV 195

>d1wl8a1 c.23.16.1 (A:1-188) GMP synthase subunit A, GuaAA {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.2 bits (116), Expect = 3e-08
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 27  SHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD-----FHKDELRLYGLQFHPEVDL 81
             +       +K   +    ++ L  + K++   +         +EL +YG+QFHPEV  
Sbjct: 112 DEIFKGLPKRLKVWESHMDEVKELPPKFKILARSETCPIEAMKHEELPIYGVQFHPEVAH 171

Query: 82  TNEGRTMLKNFLFDVCG 98
           T +G  +L+NF   +CG
Sbjct: 172 TEKGEEILRNFA-KLCG 187

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.0 bits (113), Expect = 8e-08
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 23  IESASHLASNKADVIKTHHNDSPLIRALREQGKVIEPLKD-----FHKDELRLYGLQFHP 77
           +  + ++       I    N +  I  L +   +           F+     +Y  QFHP
Sbjct: 109 VMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHP 168

Query: 78  EVDLTNEGRTMLKNFLFDVCG 98
           EV+ T  GR + +NF+  +C 
Sbjct: 169 EVEHTQYGRDIFRNFI-GICA 188

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 5/32 (15%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 63  FHKDELRLYGLQFHPEVDLT-NEGRTMLKNFL 93
            H+ +   +  Q +PE     ++   +  +F+
Sbjct: 188 IHRTDKPAFSFQGNPEASPGPHDAAPLFDHFI 219

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
             K   R+ G QFHPE   +  GR +L+  +
Sbjct: 167 VRKG--RILGFQFHPEKS-SKIGRKLLEKVI 194

>d1jvna2 c.23.16.1 (A:-3-229) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 232

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 7e-04
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 70  LYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTGNFTLKSREE 110
           ++  QFHPE      G  +++NFL        N++ + +E 
Sbjct: 190 IFATQFHPEKSGKA-GLNVIENFLKQQSPPIPNYSAEEKEL 229

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: GMP synthetase, central domain
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 14/24 (58%), Positives = 19/24 (79%)

Query: 124 KVLVRKLGLDLGLTPEVVMRHPFP 147
           K  VRK+GL+LGL  +++ RHPFP
Sbjct: 174 KDEVRKIGLELGLPYDMLYRHPFP 197

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 195

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 9/31 (29%), Positives = 10/31 (32%), Gaps = 3/31 (9%)

Query: 63  FHKDELRLYGLQFHPEVDLTNEGRTMLKNFL 93
             K+   L   QFHPE      G   L    
Sbjct: 165 LAKE--NLLAPQFHPEKSGKA-GLAFLALAR 192

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} Length = 202

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 69  RLYGLQFHPEVDLTNEGRTMLKNFL 93
           +  G  FHPE+    +   +++ FL
Sbjct: 168 QFLGCSFHPELT---DDHRLMQYFL 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1gpma2	205	GMP synthetase {Escherichia coli [TaxId: 562]}	99.6
d1i7qb_	192	Anthranilate synthase GAT subunit, TrpG {Serratia	99.59
d1qdlb_	195	Anthranilate synthase GAT subunit, TrpG {Archaeon	99.5
d1a9xb2	228	Carbamoyl phosphate synthetase, small subunit C-te	99.49
d1wl8a1	188	GMP synthase subunit A, GuaAA {Archaeon Pyrococcus	99.48
d2a9va1	196	GMP synthase subunit A, GuaAA {Archaeon Thermoplas	99.35
d1jvna2	232	GAT subunit, HisH, (or domain) of imidazoleglycero	98.99
d1wxia1	274	NH3-dependent NAD+-synthetase {Escherichia coli [T	98.98
d1kqpa_	271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	98.97
d1gpma1	197	GMP synthetase, central domain {Escherichia coli [	98.94
d1ka9h_	195	GAT subunit, HisH, (or domain) of imidazoleglycero	98.74
d1l9xa_	288	gamma-glutamyl hydrolase {Human (Homo sapiens) [Ta	98.71
d1xnga1	255	NH3-dependent NAD+-synthetase {Helicobacter pylori	98.68
d1k9vf_	200	GAT subunit, HisH, (or domain) of imidazoleglycero	98.55
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	98.23
d2nv0a1	195	Hypothetical protein YaaE {Bacillus subtilis [TaxI	98.13
d2abwa1	218	Pyridoxine biosynthesis protein 2, Pdx2 {Malaria p	97.92
d1o1ya_	230	Hypothetical protein TM1158 {Thermotoga maritima [	97.86
d1vl2a1	168	Argininosuccinate synthetase, N-terminal domain {T	96.18
d1vcoa1	250	CTP synthase PyrG, C-terminal domain {Thermus ther	95.95
d1j20a1	165	Argininosuccinate synthetase, N-terminal domain {T	95.88
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	95.58
d1wy5a1	216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	95.11
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	95.09
d1s1ma1	258	CTP synthase PyrG, C-terminal domain {Escherichia	95.09
d2c5sa1	218	Thiamine biosynthesis protein ThiI, C-terminal dom	94.7
d1zuna1	211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	93.39
d1jgta1	299	beta-Lactam synthetase {Streptomyces clavuligerus	90.19
d1ct9a1	324	Asparagine synthetase B, C-terminal domain {Escher	89.31
d2pg3a1	230	Queuosine biosynthesis protein QueC {Erwinia carot	88.76
d1q15a1	296	beta-Lactam synthetase {Pectobacterium carotovorum	83.94

>d1gpma2 c.23.16.1 (A:3-207) GMP synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.4e-16  Score=127.25  Aligned_cols=84  Identities=31%  Similarity=0.489  Sum_probs=64.7

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccccc-------ce------------------ec-----cccccccc
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQ-------GK------------------VI-----EPLKDFHK   65 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~-------s~------------------vi-----~pi~Ai~~   65 (188)
                      +.+||+.+.+++.+.||....+  .|....++.+++..       ++                  +.     .+.+++.+
T Consensus        91 a~~~Gg~v~~~~~~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (205)
T d1gpma2          91 AMQLGGHVEASNEREFGYAQVE--VVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVASTESCPFAIMAN  168 (205)
T ss_dssp             HHHHTCEEECCSSCEEEEEEEE--ECSCCTTTTTCCSEECTTSCEEEEEEEEECSEEEECCTTCEEEEECSSCSCSEEEE
T ss_pred             hhhcCCccccccccccCcceec--cccccccccccccccccCCccceeeecccccccccccccceeeeccCCCceEEEEe
Confidence            4578999999999999987766  45555555544311       11                  00     12566777


Q ss_pred             ccccEEEEeecccccCChhhHHHHHHHHHHhhCCCC
Q psy7151          66 DELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCGLTG  101 (188)
Q Consensus        66 ~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~~~~  101 (188)
                      .++++||||||||+++|++|.+||+||+..||+|++
T Consensus       169 ~~~ni~gvQFHPE~s~s~~G~~il~nFl~~i~~~~~  204 (205)
T d1gpma2         169 EEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEA  204 (205)
T ss_dssp             TTTTEEEESBCTTSTTSTTHHHHHHHHHHTTSCCCC
T ss_pred             CCCCEEEEEeecccCCCccHHHHHHHHHHHHhCCcc
Confidence            788999999999999999999999999999999985

>d1i7qb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Serratia marcescens [TaxId: 615]

Probab=99.59  E-value=2.4e-16  Score=125.89  Aligned_cols=81  Identities=23%  Similarity=0.327  Sum_probs=65.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccccc-------ceecc--------------cccccccccccEEEEe
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQ-------GKVIE--------------PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~-------s~vi~--------------pi~Ai~~~~~~i~GVQ   74 (188)
                      +.+||+.|.+++.+.||....+  .+...++|.+.+.+       +..+.              .++|++|.++++||||
T Consensus        90 a~~~Gg~v~~~~~~~~g~~~~~--~~~~~~l~~~~~~~~~~~~~h~~~~~~~~~~~~~~a~~~~~i~ai~~~~~~i~GvQ  167 (192)
T d1i7qb_          90 VEAYGGQVGQAGEILHGKASAI--AHDGEGMFAGMANPLPVARYHSLVGSNIPADLTVNARFGEMVMAVRDDRRRVCGFQ  167 (192)
T ss_dssp             HHHTTCEEEEEEEEEEEEEEEE--EECCCGGGTTCCSSEEEEEEEEEEEESCCTTSEEEEEETTEEEEEEETTTTEEEES
T ss_pred             HHHCCCeEEECCcccccceEEE--eecCCCceeeccccceEEeecccccccccceeeeecCCCCeeEEEEECCCCEEEEE
Confidence            4579999999999999998888  55677788877633       22221              2789999999999999


Q ss_pred             ecccccCChhhHHHHHHHHH-HhhC
Q psy7151          75 FHPEVDLTNEGRTMLKNFLF-DVCG   98 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~-~i~~   98 (188)
                      |||||.+|++|++||+|||. .+|+
T Consensus       168 FHPEs~~t~~G~~il~nFl~~~~~k  192 (192)
T d1i7qb_         168 FHPESILTTHGARLLEQTLAWALAK  192 (192)
T ss_dssp             SCTTSTTSTTHHHHHHHHHHHHHCC
T ss_pred             eCCCcCCCCChHHHHHHHHHHHhcC
Confidence            99999999999999999994 5553

>d1qdlb_ c.23.16.1 (B:) Anthranilate synthase GAT subunit, TrpG {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Anthranilate synthase GAT subunit, TrpG
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.50  E-value=3.9e-15  Score=117.90  Aligned_cols=81  Identities=28%  Similarity=0.364  Sum_probs=62.5

Q ss_pred             eeecCCeEEecCcccCCcceeEEeee-cccccccccc-------ccceecc----------------cccccccccccEE
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHH-NDSPLIRALR-------EQGKVIE----------------PLKDFHKDELRLY   71 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H-~~~~Lf~~lp-------~~s~vi~----------------pi~Ai~~~~~~i~   71 (188)
                      +.++|+.+.+.+...||....+.... ....+|.+++       +|+....                .++|+++.++++|
T Consensus        91 ~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~i~ai~~~~~~i~  170 (195)
T d1qdlb_          91 GYAFGAKIRRARKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISAEDNEIMAIHHEEYPIY  170 (195)
T ss_dssp             HHHTTCEEEEEEEEEEEEEEEEEECCSSCCSTTTTCCSEEEEEEEEEEEEECCCTTEEEEEEESSSCCEEEEEESSSSEE
T ss_pred             hhccCCEEEeecccccccccccccccccccccccCCCccceeeecceeeeeccccCcccceeccCCCcEEEEEECCCCEE
Confidence            56789999999988888766664322 2334777776       3443321                2779999888999


Q ss_pred             EEeecccccCChhhHHHHHHHHHHh
Q psy7151          72 GLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        72 GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      |||||||+.+|+.|.+||+||+..|
T Consensus       171 GvQFHPE~~~s~~G~~il~nFl~~i  195 (195)
T d1qdlb_         171 GVQFHPESVGTSLGYKILYNFLNRV  195 (195)
T ss_dssp             EESSBTTSTTCTTHHHHHHHHHHHC
T ss_pred             EEEcCCCCCCCcchHHHHHHHHhhC
Confidence            9999999999999999999999864

>d1a9xb2 c.23.16.1 (B:1653-1880) Carbamoyl phosphate synthetase, small subunit C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Carbamoyl phosphate synthetase, small subunit C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.8e-15  Score=124.93  Aligned_cols=82  Identities=9%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeeccccccccc-cccceec------------------ccccccccccccEEEEeec
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRAL-REQGKVI------------------EPLKDFHKDELRLYGLQFH   76 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~l-p~~s~vi------------------~pi~Ai~~~~~~i~GVQFH   76 (188)
                      +.+||+.|.+++...||++..+  .+...+++... .+|++.+                  ..+||++|.++++||||||
T Consensus       124 a~~~Gg~v~k~~~~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~d~~i~ai~h~~~~i~gVQFH  201 (228)
T d1a9xb2         124 ALASGAKTVKMKFGHHGGNHPV--KDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGN  201 (228)
T ss_dssp             HHHTTCCEEEEEEEEEEEEEEE--EETTTTEEEEEEEEEEEEECSTTCCTTEEEEEEETTTCCEEEEEESSSSEEEESSC
T ss_pred             HHHcCCceeecccccccccccc--cccccceeeeecccccceecccccccceEEEEEecCCCcEEEEEECCCCEEEEeCC
Confidence            5789999999999999999988  44444333322 2333221                  1389999999999999999


Q ss_pred             ccccCChh-hHHHHHHHHHHhhCC
Q psy7151          77 PEVDLTNE-GRTMLKNFLFDVCGL   99 (188)
Q Consensus        77 PE~~~t~~-G~~il~nFl~~i~~~   99 (188)
                      ||+.+|++ |..||+||+..+++.
T Consensus       202 PE~~~t~~dg~~l~~nFl~~i~~~  225 (228)
T d1a9xb2         202 PEASPGPHDAAPLFDHFIELIEQY  225 (228)
T ss_dssp             TTCSSSCSTTTHHHHHHHHHHHHH
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHH
Confidence            99999875 999999999876543

>d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GMP synthase subunit A, GuaAA
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.35  E-value=1.8e-13  Score=108.82  Aligned_cols=78  Identities=23%  Similarity=0.335  Sum_probs=55.7

Q ss_pred             eecCCeEEecCcccCCcceeEEeeeccccccccccc-------cc----------eecc-----cccccccccccEEEEe
Q psy7151          17 TLRPDLIESASHLASNKADVIKTHHNDSPLIRALRE-------QG----------KVIE-----PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        17 ~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~-------~s----------~vi~-----pi~Ai~~~~~~i~GVQ   74 (188)
                      .++|+.+.+.+.+.+|.....  .+..+.+|++++.       |+          .+++     +++|+++.++++||+|
T Consensus        88 ~~~gg~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~H~~~v~~~~~~~~v~a~~~~~~v~ai~~~~~~i~gvQ  165 (196)
T d2a9va1          88 LHFGASVVKAKHPEFGKTKVS--VMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQ  165 (196)
T ss_dssp             HHTTCEEEEEEEEEEEEEEEE--ESCCCGGGTTCCSEEEEEEEEEEEEESCCTTEEEEEECSSCSCSEEEESSSSEEEES
T ss_pred             hccccccccccccccccceEE--EecCCccccCCCCceEEEecceeEEEeCCCccceeecccccchheEEECCCCEEEEE
Confidence            456777777776666544333  3445556666652       22          2221     4889999888999999


Q ss_pred             ecccccCChhhHHHHHHHHHHh
Q psy7151          75 FHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ||||+.+|++|++||+||+...
T Consensus       166 fHPE~~~s~~G~~il~~F~~~~  187 (196)
T d2a9va1         166 FHPEVEHTQYGRDIFRNFIGIC  187 (196)
T ss_dssp             SCTTSTTSTTHHHHHHHHHHHH
T ss_pred             eCcccCCCccHHHHHHHHHHHH
Confidence            9999999999999999999653

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=5.6e-11  Score=100.09  Aligned_cols=73  Identities=12%  Similarity=0.164  Sum_probs=56.8

Q ss_pred             HHHHHHHhhCCCCCcccchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHhhc---CC-CC---------CceEEE
Q psy7151          89 LKNFLFDVCGLTGNFTLKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVMRH---PF-PG---------PGLAIR  154 (188)
Q Consensus        89 l~nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva~~---~~-p~---------~~L~v~  154 (188)
                      ++.++-..+++.+.|++++.++.++.|||+++.+ .+..+.++|+||||||||+|.+   ++ +.         +.+++.
T Consensus         2 ~~~~~~~~~~~~p~~~~ee~i~~~v~~L~dy~~k~~~~k~vVvGlSGGIDSav~A~L~~~Alg~~~v~~g~~~~~~i~v~   81 (274)
T d1wxia1           2 LQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVR   81 (274)
T ss_dssp             HHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHSTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             hHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEECCCCHHHHHHHHHHHHHHHHHhhhhccccceEEEEe
Confidence            5677888999999999999999999999999974 3334445599999999999932   22 11         358999


Q ss_pred             EecCCch
Q psy7151         155 VICGEER  161 (188)
Q Consensus       155 ~~~~~~~  161 (188)
                      ||+..+.
T Consensus        82 mp~~~~~   88 (274)
T d1wxia1          82 LPYGVQA   88 (274)
T ss_dssp             CCSSSCT
T ss_pred             cCCcccc
Confidence            9976543

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=1.2e-10  Score=97.83  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=56.0

Q ss_pred             HHHHHhhCCCCCcccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh---hc-C-------CCCCceEEEEecCC
Q psy7151          91 NFLFDVCGLTGNFTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM---RH-P-------FPGPGLAIRVICGE  159 (188)
Q Consensus        91 nFl~~i~~~~~~W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva---~~-~-------~p~~~L~v~~~~~~  159 (188)
                      .++..--++.++||+++.++.++.|||+++.+.+..+.++|+||||||||+|   +. .       +|++++|+.||...
T Consensus         4 ~~i~~~~~~~p~~d~~e~i~~~v~~lrdy~~ksg~~gvvvglSGGIDSAv~a~L~~~A~~~~~~~~g~~~v~~v~mP~~~   83 (271)
T d1kqpa_           4 EKIMRELHVKPSIDPKQEIEDRVNFLKQYVKKTGAKGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGT   83 (271)
T ss_dssp             HHHHHHHTCCSSCCHHHHHHHHHHHHHHHHHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSS
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHHHHHHHHHHHhcCCceeeeeecCccc
Confidence            3444445689999999999999999999998766666667999999999986   22 2       68889999999644

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: GMP synthetase, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=1.2e-10  Score=88.40  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=36.9

Q ss_pred             cccchHHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHhhc
Q psy7151         103 FTLKSREEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVMRH  144 (188)
Q Consensus       103 W~~~~~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva~~  144 (188)
                      |+|++++++.+++||++++++++++   |+||||||+|+|..
T Consensus         1 ~~~~~~i~~~~~~ik~~v~~~kvvV---~lSGGVDSsv~a~l   39 (197)
T d1gpma1           1 WTPAKIIDDAVARIREQVGDDKVIL---GLSGGVDSSVTAML   39 (197)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEE---ECCSSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEE---EcCCCHHHHHHHHH
Confidence            9999999999999999999999888   99999999999943

>d1ka9h_ c.23.16.1 (H:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=1.5e-09  Score=83.36  Aligned_cols=32  Identities=28%  Similarity=0.194  Sum_probs=26.6

Q ss_pred             cccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          61 KDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        61 ~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      +|+++  .++||+|||||+++ +.|.+||+||++.
T Consensus       163 a~v~~--~ni~GvQFHPEkS~-~~G~~lL~nF~~~  194 (195)
T d1ka9h_         163 ALLAK--ENLLAPQFHPEKSG-KAGLAFLALARRY  194 (195)
T ss_dssp             EEEEC--SSEEEESSCTTSSH-HHHHHHHHHHHHH
T ss_pred             EEEEc--CCEEEEeCCccccc-HhHHHHHHHHHHh
Confidence            45554  48999999999875 7899999999974

>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: gamma-glutamyl hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.7e-09  Score=88.14  Aligned_cols=58  Identities=22%  Similarity=0.408  Sum_probs=44.9

Q ss_pred             ccccccccccEEEEeeccc-----------ccCChhhHHH---HHHHHHHhhCCCCCcccchHHHHHHHHHHH
Q psy7151          60 LKDFHKDELRLYGLQFHPE-----------VDLTNEGRTM---LKNFLFDVCGLTGNFTLKSREEELIKYVKE  118 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE-----------~~~t~~G~~i---l~nFl~~i~~~~~~W~~~~~ie~iI~~IRe  118 (188)
                      ++++++.+.|+||||||||           ..||..+.++   |.||+...|+. .+|+..+..++.-..|+.
T Consensus       198 I~~ie~~~~pi~GvQfHPEk~~fE~~~~~~~~H~~~~~~~~~~~~~ffv~~~rk-n~~~f~~~~~~~~~lI~n  269 (288)
T d1l9xa_         198 ISTMEGYKYPVYGVQWHPEKAPYEWKNLDGISHAPNAVKTAFYLAEFFVNEARK-NNHHFKSESEEEKALIYQ  269 (288)
T ss_dssp             EEEEEESSSCEEEESSCTTHHHHCCSSCTTCCCCHHHHHHHHHHHHHHHHHHTT-SCCCCSSHHHHHHHSGGG
T ss_pred             EEEEEcCCCcEEEEEcCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-ccCCCCCHHHHHHHhhcC
Confidence            6677888889999999999           4488888666   99999899984 456777777666555554

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Helicobacter pylori [TaxId: 210]

Probab=98.68  E-value=2.9e-09  Score=87.98  Aligned_cols=53  Identities=23%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             ccchHHHHHHHHHHHHhC---CCcEEEEeeccccCCChhhHh---hcCCCCCceEEEEecCC
Q psy7151         104 TLKSREEELIKYVKETVG---NMKVLVRKLGLDLGLTPEVVM---RHPFPGPGLAIRVICGE  159 (188)
Q Consensus       104 ~~~~~ie~iI~~IRe~Vg---~~kVi~~~~GlSGGvDSavva---~~~~p~~~L~v~~~~~~  159 (188)
                      |++++++.++.|||+++.   .++|++   |+||||||+|+|   ..+++++++|+.||...
T Consensus         2 d~~~~~~~l~~~l~~~~~~~G~k~vvv---glSGGVDSsv~A~L~~~a~~~~v~~v~mp~~~   60 (255)
T d1xnga1           2 DYQKLIVYLCDFLEKEVQKRGFKKVVY---GLSGGLDSAVVGVLCQKVFKENAHALLMPSSV   60 (255)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCCEEE---ECCSSHHHHHHHHHHHHHHGGGEEEEECCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCeEEE---ECCCCHHHHHHHHHHHHHhhhhcchhcCcchh
Confidence            567899999999999985   456666   999999999999   45678889999999754

>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.2e-08  Score=79.96  Aligned_cols=31  Identities=35%  Similarity=0.609  Sum_probs=25.6

Q ss_pred             ccccccccEEEEeecccccCChhhHHHHHHHHHH
Q psy7151          62 DFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFD   95 (188)
Q Consensus        62 Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~   95 (188)
                      |+++  .++||+|||||++ ++.|.+||+||++.
T Consensus       166 ~v~~--~ni~GvQFHPEkS-~~~G~~ll~nFl~~  196 (200)
T d1k9vf_         166 AVRK--GRILGFQFHPEKS-SKIGRKLLEKVIEC  196 (200)
T ss_dssp             EEEE--TTEEEESSBGGGS-HHHHHHHHHHHHHH
T ss_pred             EEEc--CCEEEEeCCCccc-chhHHHHHHHHHhh
Confidence            4554  4899999999966 48899999999963

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.23  E-value=1.4e-07  Score=74.38  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=26.4

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHHhhC
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVCG   98 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~~   98 (188)
                      ++|+++  .++||+|||||++.   |.+|++||+..+.+
T Consensus       161 ~~a~~~--gni~G~QFHPEkS~---~~~il~~Fl~~~~~  194 (202)
T d1q7ra_         161 IVAARQ--GQFLGCSFHPELTD---DHRLMQYFLNMVKE  194 (202)
T ss_dssp             EEEEEE--TTEEEESSCGGGSS---CCHHHHHHHHHHHH
T ss_pred             EEEEEe--CCEEEEEeCCccCC---ChHHHHHHHHHHHH
Confidence            445543  58999999999864   67899999987643

>d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.13  E-value=1.1e-06  Score=68.74  Aligned_cols=51  Identities=20%  Similarity=0.225  Sum_probs=31.9

Q ss_pred             eeccccccccccccceecc----cccccccccccEEEEeecccccCChhhHHHHHHHHHHhh
Q psy7151          40 HHNDSPLIRALREQGKVIE----PLKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDVC   97 (188)
Q Consensus        40 ~H~~~~Lf~~lp~~s~vi~----pi~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i~   97 (188)
                      .|++.  +..++++..+++    .+.|+++  .++||+|||||.++.   ..++++|++.+.
T Consensus       134 ~h~~~--~~~~~~~~~vla~~~~~~~a~~~--~ni~g~QFHPE~s~~---~~~~~~F~~~~~  188 (195)
T d2nv0a1         134 IRAPH--ILEAGENVEVLSEHNGRIVAAKQ--GQFLGCSFHPELTED---HRVTQLFVEMVE  188 (195)
T ss_dssp             ESCCE--EEEECTTCEEEEEETTEEEEEEE--TTEEEESSCTTSSSC---CHHHHHHHHHHH
T ss_pred             EeeeE--EEecCCCceeeeeECCEEEEEEE--CCEEEEEeCCcccCC---cHHHHHHHHHHH
Confidence            34444  444555444443    2446543  589999999998764   347888886543

>d2abwa1 c.23.16.1 (A:2-219) Pyridoxine biosynthesis protein 2, Pdx2 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Pyridoxine biosynthesis protein 2, Pdx2
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.92  E-value=5.2e-06  Score=64.78  Aligned_cols=32  Identities=22%  Similarity=0.327  Sum_probs=24.5

Q ss_pred             ccccccccccEEEEeecccccCChhhHHHHHHHHHHh
Q psy7151          60 LKDFHKDELRLYGLQFHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        60 i~Ai~~~~~~i~GVQFHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ++|+++  .+++|+|||||.+.+.   .++++|+..+
T Consensus       181 i~av~~--~ni~G~QFHPE~s~d~---r~~~~F~~~v  212 (218)
T d2abwa1         181 IAAVEQ--NNCLGTVFHPELLPHT---AFQQYFYEKV  212 (218)
T ss_dssp             EEEEEE--TTEEEESSCGGGSSCC---HHHHHHHHHH
T ss_pred             EEEEec--CCEEEEEcCCeecCCc---hHHHHHHHHH
Confidence            556754  5899999999987543   4889998765

>d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein TM1158
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=6.7e-06  Score=66.11  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=45.6

Q ss_pred             eeecCCeEEecCcccCCcceeEEeeecccccccccccccee-------c---------c-----cccccccccccEEEEe
Q psy7151          16 GTLRPDLIESASHLASNKADVIKTHHNDSPLIRALREQGKV-------I---------E-----PLKDFHKDELRLYGLQ   74 (188)
Q Consensus        16 g~~~g~~I~~~~~~~HGk~~~V~s~H~~~~Lf~~lp~~s~v-------i---------~-----pi~Ai~~~~~~i~GVQ   74 (188)
                      +.++|+.|.+.+...++....+.. ..+..+|+++|..+.+       .         +     ++.|+..  .++||+|
T Consensus        98 a~alGg~V~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~H~d~~~lp~~~~~la~s~~~~~qa~~~--~~~~g~Q  174 (230)
T d1o1ya_          98 AKVLGASVYRGKNGEEIGWYFVEK-VSDNKFFREFPDRLRVFQWHGDTFDLPRRATRVFTSEKYENQGFVY--GKAVGLQ  174 (230)
T ss_dssp             HHHTTCCEEECTTCCEEEEEEEEE-CCCCGGGTTSCSEEEEEEEESEEECCCTTCEEEEECSSCSCSEEEE--TTEEEES
T ss_pred             HHHhcccccccccccccccccccc-ccchhhhccCCccceEEEecceeeeeccchhhhhhhcCCceEEEEe--cCEeEEE
Confidence            456899999887654444444422 3455677777633222       1         1     2556654  4899999


Q ss_pred             ecccccCChhhHHHHHHHHHHh
Q psy7151          75 FHPEVDLTNEGRTMLKNFLFDV   96 (188)
Q Consensus        75 FHPE~~~t~~G~~il~nFl~~i   96 (188)
                      ||||..     ..++++|+..-
T Consensus       175 fHPE~~-----~~~~~~~i~~~  191 (230)
T d1o1ya_         175 FHIEVG-----ARTMKRWIEAY  191 (230)
T ss_dssp             SBSSCC-----HHHHHHHHHHT
T ss_pred             eCCCCC-----HHHHHHHHHHh
Confidence            999973     46788887543

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.00052  Score=48.70  Aligned_cols=20  Identities=25%  Similarity=0.411  Sum_probs=16.1

Q ss_pred             CcEEEEeeccccCCChhhHhhcC
Q psy7151         123 MKVLVRKLGLDLGLTPEVVMRHP  145 (188)
Q Consensus       123 ~kVi~~~~GlSGGvDSavva~~~  145 (188)
                      +|+++   |+|||+||+|++..+
T Consensus         2 ~KIvv---alSGGvDS~vl~~lL   21 (168)
T d1vl2a1           2 EKVVL---AYSGGLDTSVILKWL   21 (168)
T ss_dssp             CEEEE---ECCSSHHHHHHHHHH
T ss_pred             CEEEE---EeccHHHHHHHHHHH
Confidence            45666   999999999999533

>d1vcoa1 c.23.16.1 (A:298-547) CTP synthase PyrG, C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.95  E-value=0.0011  Score=54.27  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=27.5

Q ss_pred             ccccccccccE-EEEeecccccCCh-hhHHHHHHHHHH
Q psy7151          60 LKDFHKDELRL-YGLQFHPEVDLTN-EGRTMLKNFLFD   95 (188)
Q Consensus        60 i~Ai~~~~~~i-~GVQFHPE~~~t~-~G~~il~nFl~~   95 (188)
                      ++++|-++.|+ .|+|||||....+ ...-+|..|+..
T Consensus       208 vEiiEl~~HPffvgvQfHPEf~Srp~~phPLF~~fi~A  245 (250)
T d1vcoa1         208 VEAIELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEA  245 (250)
T ss_dssp             EEEEEETTSSSEEEESSCGGGGCBTTBCCHHHHHHHHH
T ss_pred             EEEEECCCCCcEEEecCCccccCCCCCCCccHHHHHHH
Confidence            56788777665 5999999987654 457889999864

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.88  E-value=0.0013  Score=46.18  Aligned_cols=29  Identities=14%  Similarity=0.237  Sum_probs=19.8

Q ss_pred             eeccccCCChhhHhhcC---CCCCceEEEEec
Q psy7151         129 KLGLDLGLTPEVVMRHP---FPGPGLAIRVIC  157 (188)
Q Consensus       129 ~~GlSGGvDSavva~~~---~p~~~L~v~~~~  157 (188)
                      ++|+|||+||++++..+   +.-..+++.+-.
T Consensus         4 lvA~SGG~DS~vll~lL~e~~~~~vi~~~~~~   35 (165)
T d1j20a1           4 VLAYSGGLDTSIILKWLKETYRAEVIAFTADI   35 (165)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHTCEEEEEEEES
T ss_pred             EEEEeCHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence            44999999999998432   234456666544

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0013  Score=47.46  Aligned_cols=20  Identities=10%  Similarity=0.225  Sum_probs=16.3

Q ss_pred             CCcEEEEeeccccCCChhhHhhc
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVMRH  144 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva~~  144 (188)
                      +++|++   |+||||||+|++..
T Consensus        10 gkKv~v---A~SGGvDSsvll~l   29 (188)
T d1k92a1          10 GQRIGI---AFSGGLDTSAALLW   29 (188)
T ss_dssp             TSEEEE---ECCSSHHHHHHHHH
T ss_pred             CCEEEE---EeCCCHHHHHHHHH
Confidence            356766   99999999999943

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.11  E-value=0.014  Score=45.30  Aligned_cols=18  Identities=22%  Similarity=0.418  Sum_probs=15.6

Q ss_pred             CCcEEEEeeccccCCChhhHh
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva  142 (188)
                      +++|++   |+|||+||++++
T Consensus        24 ~~kv~V---a~SGG~DS~~Ll   41 (216)
T d1wy5a1          24 ERRVLI---AFSGGVDSVVLT   41 (216)
T ss_dssp             CCEEEE---ECCSSHHHHHHH
T ss_pred             CCeEEE---EeCCcHHHHHHH
Confidence            567887   999999999877

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0081  Score=46.81  Aligned_cols=26  Identities=19%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             HHHHHhCCCcEEEEeeccccCCChhhHhh
Q psy7151         115 YVKETVGNMKVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       115 ~IRe~Vg~~kVi~~~~GlSGGvDSavva~  143 (188)
                      .-|....+++|++   |+|||+||++++.
T Consensus         6 l~~~l~~~kkvlv---a~SGG~DS~~Ll~   31 (227)
T d1ni5a1           6 LNRQLLTSRQILV---AFSGGLDSTVLLH   31 (227)
T ss_dssp             HHHHHTTCSEEEE---ECCSBHHHHHHHH
T ss_pred             hhhhcCCCCcEEE---EecCcHHHHHHHH
Confidence            3455667788888   9999999998773

>d1s1ma1 c.23.16.1 (A:287-544) CTP synthase PyrG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: CTP synthase PyrG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.09  E-value=0.0045  Score=50.80  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=28.7

Q ss_pred             cccccccccc-EEEEeecccccCCh-hhHHHHHHHHHHh
Q psy7151          60 LKDFHKDELR-LYGLQFHPEVDLTN-EGRTMLKNFLFDV   96 (188)
Q Consensus        60 i~Ai~~~~~~-i~GVQFHPE~~~t~-~G~~il~nFl~~i   96 (188)
                      ++++|-++.| +.|+|||||-...+ ...-+|..|+...
T Consensus       212 vEiiEl~~HPffvg~QfHPEf~Srp~~p~PLF~~Fi~Aa  250 (258)
T d1s1ma1         212 VEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA  250 (258)
T ss_dssp             EEEEECTTSSSEEEESSCGGGTCCTTTCCHHHHHHHHHH
T ss_pred             EEEEEeCCCCeEEEecCCccccCCCCCCChHHHHHHHHH
Confidence            6788877765 79999999998655 3457999998654

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Thiamine biosynthesis protein ThiI, C-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=94.70  E-value=0.0047  Score=46.88  Aligned_cols=29  Identities=24%  Similarity=0.177  Sum_probs=19.5

Q ss_pred             cEEEEeeccccCCChhhHhhcCCC--CCceEEEE
Q psy7151         124 KVLVRKLGLDLGLTPEVVMRHPFP--GPGLAIRV  155 (188)
Q Consensus       124 kVi~~~~GlSGGvDSavva~~~~p--~~~L~v~~  155 (188)
                      ||++   ++|||+||+|++..+..  -+..++.+
T Consensus         6 Kvvv---~~SGG~DS~vla~ll~k~g~~v~av~~   36 (218)
T d2c5sa1           6 KVMV---LLSGGIDSPVAAYLTMKRGVSVEAVHF   36 (218)
T ss_dssp             EEEE---ECCSSSHHHHHHHHHHHBTEEEEEEEE
T ss_pred             EEEE---EecCcHHHHHHHHHHHHcCCeEEEEEE
Confidence            5666   99999999999943332  13445544

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PAPS reductase-like
domain: Sulfate adenylyltransferase subunit 2, CysD
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.39  E-value=0.016  Score=42.15  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=27.6

Q ss_pred             cchHHHHHHHHHHHHhCC-CcEEEEeeccccCCChhhHh
Q psy7151         105 LKSREEELIKYVKETVGN-MKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       105 ~~~~ie~iI~~IRe~Vg~-~kVi~~~~GlSGGvDSavva  142 (188)
                      ++.+..+.++.||+.+.. +++++   +.|||.||+|+.
T Consensus         8 l~~l~~~ai~~ir~~~~~~d~i~v---a~SGGKDS~vlL   43 (211)
T d1zuna1           8 LKQLEAESIHIIREVAAEFDNPVM---LYSIGKDSAVML   43 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSEEE---ECCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEE---EeCCcHHHHHHH
Confidence            556778888889987663 45655   899999999997

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=90.19  E-value=0.052  Score=44.23  Aligned_cols=33  Identities=21%  Similarity=0.114  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEeeccccCCChhhHh
Q psy7151         108 REEELIKYVKETVGNMKVLVRKLGLDLGLTPEVVM  142 (188)
Q Consensus       108 ~ie~iI~~IRe~Vg~~kVi~~~~GlSGGvDSavva  142 (188)
                      +-+.+.+-++.++..+..++  +-||||+||+++|
T Consensus        17 ~r~~L~~AV~~rl~~~~~~g--v~LSGGlDSs~ia   49 (299)
T d1jgta1          17 VRAALEKAVAQRVTPGDTPL--VVLSGGIDSSGVA   49 (299)
T ss_dssp             HHHHHHHHHHHHSCTTCCCE--EECCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEE--EEccCHHHHHHHH
Confidence            33444555666665454444  2599999999987

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Asparagine synthetase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=0.095  Score=42.32  Aligned_cols=37  Identities=19%  Similarity=0.090  Sum_probs=26.2

Q ss_pred             ccchHHHHHHHHHHHHhCCC-cEEEEeeccccCCChhhHhh
Q psy7151         104 TLKSREEELIKYVKETVGNM-KVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       104 ~~~~~ie~iI~~IRe~Vg~~-kVi~~~~GlSGGvDSavva~  143 (188)
                      +.+++.+.+.+-|+.+.-.+ .+-+   -||||+||+++|.
T Consensus        15 ~~eel~~~l~~sV~~rl~sDvpig~---~LSGGlDSs~Iaa   52 (324)
T d1ct9a1          15 DKNELRQALEDSVKSHLMSDVPYGV---LLSGGLDSSIISA   52 (324)
T ss_dssp             CHHHHHHHHHHHHHHHTCCSSCEEE---ECCSSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCCcEEE---EecchHHHHHHHH
Confidence            45667677777788876544 3433   5899999998883

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Queuosine biosynthesis protein QueC
species: Erwinia carotovora [TaxId: 554]

Probab=88.76  E-value=0.047  Score=41.58  Aligned_cols=17  Identities=12%  Similarity=0.169  Sum_probs=14.1

Q ss_pred             cEEEEeeccccCCChhhHhh
Q psy7151         124 KVLVRKLGLDLGLTPEVVMR  143 (188)
Q Consensus       124 kVi~~~~GlSGGvDSavva~  143 (188)
                      ||++   .+|||+||++++.
T Consensus         3 K~Vv---l~SGGlDS~v~a~   19 (230)
T d2pg3a1           3 RAVV---VFSGGQDSTTCLI   19 (230)
T ss_dssp             EEEE---ECCSSHHHHHHHH
T ss_pred             eEEE---EcCCcHHHHHHHH
Confidence            4555   9999999999983

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=83.94  E-value=0.23  Score=40.07  Aligned_cols=22  Identities=23%  Similarity=0.084  Sum_probs=15.9

Q ss_pred             CCcEEEEeeccccCCChhhHhhcCC
Q psy7151         122 NMKVLVRKLGLDLGLTPEVVMRHPF  146 (188)
Q Consensus       122 ~~kVi~~~~GlSGGvDSavva~~~~  146 (188)
                      +.+|=+   -+|||+||++++..+.
T Consensus        33 ~~~VGv---~LSGGlDSslia~~~~   54 (296)
T d1q15a1          33 FDTVGI---PLSGGLDSSLVTALAS   54 (296)
T ss_dssp             CSEEEE---ECCSSHHHHHHHHHHT
T ss_pred             CCEEEE---EccCcHHHHHHHHHHH
Confidence            344544   7999999999985443