Psyllid ID: psy7163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540----
Protein Sequence
GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS
Secondary Structure (PSIPRED)
cccccEEEEEEEccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHccccccccccccHHHHcccHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHccccccccccHHHHHHHccccHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEcccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccEcccccccccccccccHHHcccHcHHHHHHHHHEHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccEccHHHEHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
gnskyhyygirvkpdsplnniplsdenggnskyhyygirvkpdsplnniplsdengsprgkkyklvktdsnsnqygseghttagqtnsnpspqsgnhnflgdgsnaipdfpeidlsedclpedctiedvdTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRsqdnnngdeceeekylsksklfclskcvpvqafvrRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRsqdnnngdeceeekylsksklfclskcvpvqafvrRVDFLFYQNLVEVlipdvlrpipgsltSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTdlnrvdfhnvqEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVlkpfegkpnfTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALatgetpiavigskesnpvessqnpmdnglyahgqnnilvheelhishapkrikls
Flexible Loop (DISEMBL)
gnskyhyygirvkpdsplnnIPLSDENGGNSKYHYYGIRVKPDSPLNNIPlsdengsprgkKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYAHGQNNILVHEElhishapkrikls
Low Complexity Region (SEG)
GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS
Disordered region (IsUnstruct)
*****HYYGIRV*******************KYHYYGIRV********************************************************************DFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQ**********EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQ**********EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVI*******************YAHGQNNILVHEEL************
Disordered Region (DISOPRED)
**SKYHYYGIRVKPDS*****************HYYGIRVK************************************************************************************************************LDFSTIESLWREFWR****************SKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQD***********YLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG*PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQ**********************************************************
Disordered Region (DISEMBL)
GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYG****************QSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDN***********LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDN***********LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE********NPMDNGLYAHGQNNILVHEELHISHAPKRIKLS
Disordered Region (DISPRO)
*NSKYHYYGIRVKPDSPLNNIPLSDE*GGNSKYHYYGIRVKPDSPLNNIPLSDENGS*************************************************IPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE*****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	544	2.2.26 [Sep-21-2011]
Q0V9K5	749	Transcription factor RFX3	yes	N/A	0.724	0.526	0.502	1e-125
P48380	749	Transcription factor RFX3	yes	N/A	0.726	0.527	0.502	1e-125
Q4R3I8	749	Transcription factor RFX3	N/A	N/A	0.726	0.527	0.502	1e-125
P48381	749	Transcription factor RFX3	yes	N/A	0.726	0.527	0.5	1e-125
A0JMF8	765	Transcription factor RFX3	yes	N/A	0.726	0.516	0.490	1e-117
B1WAV2	694	DNA-binding protein RFX2	no	N/A	0.523	0.410	0.680	1e-114
A6QLW9	707	DNA-binding protein RFX2	no	N/A	0.523	0.403	0.681	1e-113
Q32NR3	694	DNA-binding protein RFX2	N/A	N/A	0.523	0.410	0.676	1e-113
P22670	979	MHC class II regulatory f	no	N/A	0.547	0.304	0.653	1e-113
P48379	717	DNA-binding protein RFX2	no	N/A	0.523	0.397	0.675	1e-113

>sp|Q0V9K5|RFX3_XENTR Transcription factor RFX3 OS=Xenopus tropicalis GN=rfx3 PE=2 SV=2

 Score =  449 bits (1156), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/488 (50%), Positives = 297/488 (60%), Gaps = 94/488 (19%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
           GNSKYHYYGIRVKPDSPLN +    +  + R       ++YK + K D   + +   G +
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVGDGFAGSGQS 304

Query: 82  TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
            A         QS +H    D S A+P+F E+++S   LP+  T E              
Sbjct: 305 GAS-VEQTVIAQSQHHQQFLDASRALPEFAEVEIS--SLPDGTTFE-------------- 347

Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
                    D  +++SL+RE            CE                          
Sbjct: 348 ---------DIKSLQSLYRE-----------HCE-------------------------- 361

Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEE 252
                          A LD +V L FS IE LW+ FWR         S    +G+  E E
Sbjct: 362 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSSPADGSTITESGNLSEIE 406

Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
             L KSKL    K   +  ++   D + YQ+LVE+LIPDVLRPIP +LT ++RNFAK +E
Sbjct: 407 SRLPKSKLILFCKNESIVKWMCNCDHMMYQSLVEILIPDVLRPIPSALTQAVRNFAKSLE 466

Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
            WL++AM   PQ MI  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 467 GWLSSAMSNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 526

Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
           RVDF NVQEQASWVCQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NVV   LKP+EG+
Sbjct: 527 RVDFANVQEQASWVCQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVVTQALKPYEGR 586

Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
           P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 587 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 646

Query: 493 ETPIAVIG 500
           E+PIAV+G
Sbjct: 647 ESPIAVMG 654

Transcription factor required for ciliogenesis and islet cell differentiation during endocrine pancreas development.
Xenopus tropicalis (taxid: 8364)

>sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens GN=RFX3 PE=1 SV=2

 Score =  449 bits (1155), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/488 (50%), Positives = 295/488 (60%), Gaps = 93/488 (19%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
           GNSKYHYYGIRVKPDSPLN +    +  + R       ++YK + K D  ++ +   G  
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304

Query: 82  TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
           T          QS +H    D S A+P+F E+++S   LP+  T E              
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348

Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
                    D  +++SL+RE            CE                          
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362

Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
                          A LD +V L FS IE LW+ FWR   +   D           E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407

Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
             L K+KL  L K   +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467

Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
            WL+NAM   PQ MI  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527

Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
           RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587

Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
           P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647

Query: 493 ETPIAVIG 500
           ETPIAV+G
Sbjct: 648 ETPIAVMG 655

Transcription factor required for ciliogenesis and islet cell differentiation during endocrine pancreas development. Essential for the differentiation of nodal monocilia and left-right asymmetry specification during embryogenesis. Required for the biogenesis of motile cilia by governing growth and beating efficiency of motile cells. Also required for ciliated ependymal cell differentiation. Regulates the expression of genes involved in ciliary assembly (DYNC2LI1, FOXJ1 and BBS4) and genes involved in ciliary motility (DNAH11, DNAH9 and DNAH5) (By similarity). Together with RFX6, participates in the differentiation of 4 of the 5 islet cell types during endocrine pancreas development, with the exception of pancreatic PP (polypeptide-producing) cells. Regulates transcription by forming a heterodimer with another RFX protein and binding to the X-box in the promoter of target genes. Acts as a transcription factor. Represses transcription of MAP1A in non-neuronal cells but not in neuronal cells.

Homo sapiens (taxid: 9606)

>sp|Q4R3I8|RFX3_MACFA Transcription factor RFX3 OS=Macaca fascicularis GN=RFX3 PE=2 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
           GNSKYHYYGIRVKPDSPLN +    +  + R       ++YK + K D  ++ +   G  
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304

Query: 82  TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
           T          QS +H    D S A+P+F E+++S   LP+  T E              
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348

Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
                    D  +++SL+RE            CE                          
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362

Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
                          A LD +V L FS IE LW+ FWR   +   D           E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIE 407

Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
             L K+KL  L K   +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467

Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
            WL+NAM   PQ MI  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLN 527

Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
           RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587

Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
           P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATG 647

Query: 493 ETPIAVIG 500
           ETPIAV+G
Sbjct: 648 ETPIAVMG 655

Transcription factor required for ciliogenesis and islet cell differentiation during endocrine pancreas development. Essential for the differentiation of nodal monocilia and left-right asymmetry specification during embryogenesis. Required for the biogenesis of motile cilia by governing growth and beating efficiency of motile cells. Also required for ciliated ependymal cell differentiation. Together with RFX6, participates in the differentiation of 4 of the 5 islet cell types during endocrine pancreas development, with the exception of pancreatic PP (polypeptide-producing) cells. Regulates transcription by forming a heterodimer with another RFX protein and binding to the X-box in the promoter of target genes. Regulates the expression of genes involved in ciliary assembly (DYNC2LI1, FOXJ1 and BBS4) and genes involved in ciliary motility (DNAH11, DNAH9 and DNAH5). Represses transcription of MAP1A in non-neuronal cells but not in neuronal cells.

Macaca fascicularis (taxid: 9541)

>sp|P48381|RFX3_MOUSE Transcription factor RFX3 OS=Mus musculus GN=Rfx3 PE=1 SV=2

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/488 (50%), Positives = 294/488 (60%), Gaps = 93/488 (19%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYK-LVKTDSNSNQYGSEGHT 81
           GNSKYHYYGIRVKPDSPLN +    +  + R       ++YK + K D  ++ +   G  
Sbjct: 245 GNSKYHYYGIRVKPDSPLNRLQEDMQYMAMRQQPMQQKQRYKPMQKVDGVADGFTGSGQQ 304

Query: 82  TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
           T          QS +H    D S A+P+F E+++S   LP+  T E              
Sbjct: 305 TGTSVEQTVIAQSQHHQQFLDASRALPEFGEVEIS--SLPDGTTFE-------------- 348

Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
                    D  +++SL+RE            CE                          
Sbjct: 349 ---------DIKSLQSLYRE-----------HCE-------------------------- 362

Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEE 252
                          A LD +V L FS IE LW+ FWR   +   D           E E
Sbjct: 363 ---------------AILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIE 407

Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
             L K+KL  L K   +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E
Sbjct: 408 SRLPKAKLITLCKHESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLE 467

Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
            WL+NAM   PQ MI  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLN
Sbjct: 468 GWLSNAMNNIPQRMIQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLN 527

Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
           RVDF NVQEQASWVCQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+
Sbjct: 528 RVDFANVQEQASWVCQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGR 587

Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
           P+F KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA  TG
Sbjct: 588 PSFPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTG 647

Query: 493 ETPIAVIG 500
           ETPIAV+G
Sbjct: 648 ETPIAVMG 655

Transcription factor required for ciliogenesis and islet cell differentiation during endocrine pancreas development. Essential for the differentiation of nodal monocilia and left-right asymmetry specification during embryogenesis. Required for the biogenesis of motile cilia by governing growth and beating efficiency of motile cells. Also required for ciliated ependymal cell differentiation. Together with RFX6, participates in the differentiation of 4 of the 5 islet cell types during endocrine pancreas development, with the exception of pancreatic PP (polypeptide-producing) cells. Regulates transcription by forming a heterodimer with another RFX protein and binding to the X-box in the promoter of target genes. Regulates the expression of genes involved in ciliary assembly (DYNC2LI1, FOXJ1 and BBS4) and genes involved in ciliary motility (DNAH11, DNAH9 and DNAH5). Represses transcription of MAP1A in non-neuronal cells but not in neuronal cells.

Mus musculus (taxid: 10090)

>sp|A0JMF8|RFX3_DANRE Transcription factor RFX3 OS=Danio rerio GN=rfx3 PE=2 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/489 (49%), Positives = 288/489 (58%), Gaps = 94/489 (19%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR------GKKYKLV-KTDSNS-NQYGSEGH 80
           GNSKYHYYGIRVKPDSPLN +    +  + R       +++K V K D  S + + S G 
Sbjct: 251 GNSKYHYYGIRVKPDSPLNRLQEDMQYMALRQQPVQQKQRFKPVQKMDGVSGDNFSSAGQ 310

Query: 81  TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
            T          QS +H    DGS               LPE     ++D   ++     
Sbjct: 311 HTPSAAEQTFIAQSQHHQQFLDGSR-------------ALPE---FVELDLGEAV----- 349

Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
               D +   D   +++L+RE            CE                         
Sbjct: 350 ----DGVGPEDVKALQTLYRE-----------HCE------------------------- 369

Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNN---------NGDECEE 251
                           A LD +V L F+ IE+LW+ FWR   ++         N    E 
Sbjct: 370 ----------------AILDVVVNLQFNLIENLWQTFWRYSASSSVEGVTITENSGLSEI 413

Query: 252 EKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGV 311
           E  L +++L  L +   V  ++   D L YQ LVE+LIPDVLRPIP +LT +IRNFAK +
Sbjct: 414 EGRLPRARLILLCRHEAVHKWMNTCDHLMYQALVEILIPDVLRPIPSALTQAIRNFAKSL 473

Query: 312 ESWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDL 371
           E WLTNAM   P  MIN KV+AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DL
Sbjct: 474 EGWLTNAMSSIPPRMINTKVSAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDL 533

Query: 372 NRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEG 431
           NRVDF NVQEQASWVCQC+  +VQ+LE DFK TLQQQ+SLE+WA WL NVV  +LKP+E 
Sbjct: 534 NRVDFANVQEQASWVCQCEEGVVQRLEQDFKATLQQQSSLEQWAAWLDNVVTQILKPYED 593

Query: 432 KPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALAT 491
           KP   KAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA AT
Sbjct: 594 KPTLPKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQAT 653

Query: 492 GETPIAVIG 500
           GET I V+G
Sbjct: 654 GETAIGVMG 662

Transcription factor required for ciliogenesis and islet cell differentiation during endocrine pancreas development.

Danio rerio (taxid: 7955)

>sp|B1WAV2|RFX2_XENTR DNA-binding protein RFX2 OS=Xenopus tropicalis GN=rfx2 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/291 (68%), Positives = 233/291 (80%), Gaps = 6/291 (2%)

Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDECEEEKYLSKSKLFCLSKCVPV 269
           +A +D ++ L F  IE LW+ FW S+    D +N    E E+E  + K KL  L K  P+
Sbjct: 353 EATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMNSEDEQEPIIPKDKLMVLCKYEPI 412

Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
             ++R  D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM   PQ++++ 
Sbjct: 413 MRWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMCDFPQQIVHA 472

Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
           KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC
Sbjct: 473 KVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQC 532

Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
           +  +VQ+LE DFKLTLQQQ+SL++WANWL NVV  VLKP EG P+F KAARQFLLKWSFY
Sbjct: 533 EEGMVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKPHEGSPSFPKAARQFLLKWSFY 592

Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643

Xenopus tropicalis (taxid: 8364)

>sp|A6QLW9|RFX2_BOVIN DNA-binding protein RFX2 OS=Bos taurus GN=RFX2 PE=2 SV=1

 Score =  410 bits (1055), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/292 (68%), Positives = 230/292 (78%), Gaps = 7/292 (2%)

Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
           +A LD ++ L F  IE LW  FW S+ +++G       DE  E   L K KL  L KC P
Sbjct: 383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442

Query: 269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
           V  ++R  D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM   PQ++I 
Sbjct: 443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQ 502

Query: 329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
            KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct: 503 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 562

Query: 389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
           C+  +VQ+LE DFKLTLQQQ+SL++WA+WL NVV  VLK   G P+F KAARQFLLKWSF
Sbjct: 563 CEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWSF 622

Query: 449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 623 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG 674

Bos taurus (taxid: 9913)

>sp|Q32NR3|RFX2_XENLA DNA-binding protein RFX2 OS=Xenopus laevis GN=rfx2 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/291 (67%), Positives = 231/291 (79%), Gaps = 6/291 (2%)

Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQ----DNNN--GDECEEEKYLSKSKLFCLSKCVPV 269
           +A +D ++ L F  IE LW+ FW S+    D +N    E E+E  +   KL  L K  P+
Sbjct: 353 EATIDVVMNLQFQYIEKLWQAFWNSKPSSPDGSNPMSSEDEQEPIIPNEKLMVLCKYEPI 412

Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
             ++R  D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM   PQ++++ 
Sbjct: 413 MRWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMCDFPQQIVHA 472

Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
           KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQC
Sbjct: 473 KVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQC 532

Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
           D  +VQ+LE DFKLTLQQQ+SL++WANWL NVV  VLKP EG  +F KAARQFLLKWSFY
Sbjct: 533 DEGMVQKLEQDFKLTLQQQSSLDQWANWLDNVVTQVLKPHEGSTSFPKAARQFLLKWSFY 592

Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 593 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 643

Xenopus laevis (taxid: 8355)

>sp|P22670|RFX1_HUMAN MHC class II regulatory factor RFX1 OS=Homo sapiens GN=RFX1 PE=1 SV=2

 Score =  409 bits (1050), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/306 (65%), Positives = 238/306 (77%), Gaps = 8/306 (2%)

Query: 216 DAFLDAIVTLDFSTIESLWREFWR---SQDNNNGDEC---EEEKYLSKSKLFCLSKCVPV 269
           +A +D +V L F+ +E+LW+ FWR   SQ +         E EK L K+ L  LSK  PV
Sbjct: 617 EAIVDVMVNLQFTLVETLWKTFWRYNLSQPSEAPPLAVHDEAEKRLPKAILVLLSKFEPV 676

Query: 270 QAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINI 329
             + +  D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +ESWLT+AM   P+EM+ +
Sbjct: 677 LQWTKHCDNVLYQGLVEILIPDVLRPIPSALTQAIRNFAKSLESWLTHAMVNIPEEMLRV 736

Query: 330 KVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQC 389
           KV A GAFAQ LRRYTSLNHLAQAARAVLQN+ QINQML+DLNRVDF NVQEQASWVC+C
Sbjct: 737 KVAAAGAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRC 796

Query: 390 DASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFY 449
           +  +VQ+LE DFK+TLQQQNSLE+WA WL  VV+ VLKP++G   F KAA+ FLLKWSFY
Sbjct: 797 EDRVVQRLEQDFKVTLQQQNSLEQWAAWLDGVVSQVLKPYQGSAGFPKAAKLFLLKWSFY 856

Query: 450 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVES 509
           SSMVIRDLTLRSAASFGSFHLIRLLYDEYM+YLIEH+VA A GETPIAV+G  E   + +
Sbjct: 857 SSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMG--EFANLAT 914

Query: 510 SQNPMD 515
           S NP+D
Sbjct: 915 SLNPLD 920

Regulatory factor essential for MHC class II genes expression. Binds to the X boxes of MHC class II genes. Also binds to an inverted repeat (ENH1) required for hepatitis B virus genes expression and to the most upstream element (alpha) of the RPL30 promoter.

Homo sapiens (taxid: 9606)

>sp|P48379|RFX2_MOUSE DNA-binding protein RFX2 OS=Mus musculus GN=Rfx2 PE=2 SV=2

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 8/293 (2%)

Query: 216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
           +A LD ++ L F  IE LW  FW  +  ++         DE  E   L K KL  L KC 
Sbjct: 373 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCE 432

Query: 268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
           P+  ++R  D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct: 433 PILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 492

Query: 328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
             KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct: 493 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 552

Query: 388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
           QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV  VLK   G P+F KAARQFLLKWS
Sbjct: 553 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAARQFLLKWS 612

Query: 448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G
Sbjct: 613 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG 665

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	544
332016778	906	Transcription factor RFX3 [Acromyrmex ec	0.781	0.469	0.554	1e-154
307200848	866	Transcription factor RFX3 [Harpegnathos	0.729	0.458	0.579	1e-151
110758942	825	PREDICTED: transcription factor RFX3-lik	0.783	0.516	0.553	1e-151
380020466	825	PREDICTED: transcription factor RFX3-lik	0.735	0.484	0.580	1e-151
383851469	868	PREDICTED: transcription factor RFX3-lik	0.735	0.460	0.576	1e-151
340726742	825	PREDICTED: transcription factor RFX3-lik	0.729	0.481	0.581	1e-151
350424614	825	PREDICTED: transcription factor RFX3-lik	0.777	0.512	0.554	1e-151
307176958	798	Transcription factor RFX3 [Camponotus fl	0.733	0.5	0.578	1e-150
322800170	779	hypothetical protein SINV_04732 [Solenop	0.720	0.503	0.570	1e-148
328707503	780	PREDICTED: DNA-binding protein RFX2-like	0.718	0.501	0.582	1e-145

>gi|332016778|gb|EGI57599.1| Transcription factor RFX3 [Acromyrmex echinatior]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 290/523 (55%), Positives = 343/523 (65%), Gaps = 98/523 (18%)

Query: 29  GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
           GNSKYHYYGIRVKP S L     ++     ++ + + K++K      +S+ Y +  HT  
Sbjct: 475 GNSKYHYYGIRVKPSSQLTVMNEDSTSRQQQSANSQAKRFKFNSQKQDSS-YENNAHTNT 533

Query: 84  GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDC-LPEDCTIEDVDTFRSIYREHCEA 142
             + ++ SPQ   H +LG+ S AIPDFP+I +S D  LP+DCT+E               
Sbjct: 534 NISANSSSPQY--HQYLGEASGAIPDFPDIFISHDSSLPKDCTLE--------------- 576

Query: 143 FLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVD 202
                   D  T  S++RE            CE                           
Sbjct: 577 --------DIDTFRSIYRE-----------HCE--------------------------- 590

Query: 203 FLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFC 262
                         AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ 
Sbjct: 591 --------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQ 636

Query: 263 LSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGC 322
           + +C  VQ F+++VD+ FYQNLV+VLIP+VLRPIP SLT SIRNFAKG+ESWL +AM  C
Sbjct: 637 MCQCTGVQDFIKKVDYTFYQNLVDVLIPNVLRPIPSSLTQSIRNFAKGLESWLQSAMADC 696

Query: 323 PQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQ 382
           P+EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQ
Sbjct: 697 PEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQ 756

Query: 383 ASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQF 442
           ASWVCQCD  +VQ+LE+DFK+TLQQQNSLE+WA WLK VV   LKP E KP F KAARQF
Sbjct: 757 ASWVCQCDYGMVQRLETDFKVTLQQQNSLEDWAIWLKGVVTQALKPHEEKPTFAKAARQF 816

Query: 443 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSK 502
           LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K
Sbjct: 817 LLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGDK 876

Query: 503 ESN-PVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS 544
             N  + +S     NG             +   +  PKRIKLS
Sbjct: 877 SQNYSLVNSFGATSNG-------------DASNTSQPKRIKLS 906

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200848|gb|EFN80901.1| Transcription factor RFX3 [Harpegnathos saltator]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/485 (57%), Positives = 327/485 (67%), Gaps = 88/485 (18%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
           GNSKYHYYGIRVKP SPL    + +E+G+ R         K++K V     S+ Y +  H
Sbjct: 437 GNSKYHYYGIRVKPSSPL---VMLNEDGTSRQPQSANSQAKRFKFVNQKQESS-YENNTH 492

Query: 81  TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
           T+   ++++  PQ   H +LG+ S AIPDFPE                      I+  H 
Sbjct: 493 TSTNISSNSSPPQ--YHQYLGEASGAIPDFPE----------------------IFIGHD 528

Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
            +  +     D  T  S++RE            CE                         
Sbjct: 529 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 552

Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
                           AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 553 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 596

Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
           + + KC  VQ F+++VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWL +AM 
Sbjct: 597 YQMCKCTGVQDFIKKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLQSAMA 656

Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
            CP+EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQ
Sbjct: 657 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQ 716

Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
           EQASWVCQCD  +VQ+LE+DFK+TLQQQNSLE+WA WLK VV  VLKPFE KP F KAAR
Sbjct: 717 EQASWVCQCDYGMVQRLEADFKVTLQQQNSLEDWAIWLKGVVTQVLKPFEEKPTFAKAAR 776

Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 777 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMG 836

Query: 501 SKESN 505
            K  N
Sbjct: 837 DKSQN 841

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110758942|ref|XP_395142.3| PREDICTED: transcription factor RFX3-like [Apis mellifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 289/522 (55%), Positives = 342/522 (65%), Gaps = 96/522 (18%)

Query: 29  GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
           GNSKYHYYGIRVKP SPL     +  P   +N + + K++K V    ++  Y +  H+  
Sbjct: 394 GNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQNTNSQTKRFKFVNQKQDTT-YENNPHSNT 452

Query: 84  GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
             +++N  PQ   H +LG+ S AIP+F          PE            I   H  + 
Sbjct: 453 NISSNNSPPQY--HQYLGEASGAIPEF----------PE------------IIVGHSSSL 488

Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
            +     D  T  S++RE            CE                            
Sbjct: 489 PEDCTLEDIDTFRSIYRE-----------HCE---------------------------- 509

Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
                        AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ +
Sbjct: 510 -------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQM 556

Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
            KC  VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM  CP
Sbjct: 557 CKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCP 616

Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
           +EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQA
Sbjct: 617 EEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQA 676

Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
           SWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV  VLKPFE KP F KAARQFL
Sbjct: 677 SWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTKVLKPFEEKPTFAKAARQFL 736

Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE 503
           LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K 
Sbjct: 737 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKS 796

Query: 504 SN-PVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS 544
            N  + S+     NG             +   ++ PKR+KLS
Sbjct: 797 QNCSLISAFGATSNG-------------DTSNANQPKRMKLS 825

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020466|ref|XP_003694104.1| PREDICTED: transcription factor RFX3-like [Apis florea]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 280/482 (58%), Positives = 327/482 (67%), Gaps = 82/482 (17%)

Query: 29  GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
           GNSKYHYYGIRVKP SPL     +  P   +N + + K++K V    ++  Y +  H+  
Sbjct: 394 GNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQNTNSQTKRFKFVNQKQDTT-YENNPHSNT 452

Query: 84  GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
             +++N  PQ   H +LG+ S AIP+F          PE            I   H  + 
Sbjct: 453 NISSNNSPPQY--HQYLGEASGAIPEF----------PE------------IIVGHSSSL 488

Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
            +     D  T  S++RE            CE                            
Sbjct: 489 PEDCTLEDIDTFRSIYRE-----------HCE---------------------------- 509

Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
                        AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ +
Sbjct: 510 -------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQM 556

Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
            KC  VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM  CP
Sbjct: 557 CKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCP 616

Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
           +EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQA
Sbjct: 617 EEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQA 676

Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
           SWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV  VLKPFE KP F KAARQFL
Sbjct: 677 SWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTKVLKPFEEKPTFAKAARQFL 736

Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE 503
           LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K 
Sbjct: 737 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKS 796

Query: 504 SN 505
            N
Sbjct: 797 QN 798

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851469|ref|XP_003701255.1| PREDICTED: transcription factor RFX3-like [Megachile rotundata]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/482 (57%), Positives = 325/482 (67%), Gaps = 82/482 (17%)

Query: 29  GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGHTTA 83
           GNSKYHYYGIRVKP SPL     +  P   +N + + K++K V    ++  Y +  H+  
Sbjct: 437 GNSKYHYYGIRVKPSSPLVMLNEDGTPRQQQNANSQTKRFKFVNQKQDAT-YENNTHSNT 495

Query: 84  GQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAF 143
             +++   PQ   H +LG+ S  IP+F          PE            I   H  + 
Sbjct: 496 NISSNTSPPQY--HQYLGEASGTIPEF----------PE------------IIVGHGSSL 531

Query: 144 LDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDF 203
            +     D  T  S++RE            CE                            
Sbjct: 532 PEDCTLEDIDTFRSIYRE-----------HCE---------------------------- 552

Query: 204 LFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCL 263
                        AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+ +
Sbjct: 553 -------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLYQI 599

Query: 264 SKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCP 323
            KC  VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM  CP
Sbjct: 600 CKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMADCP 659

Query: 324 QEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQA 383
           +EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQEQA
Sbjct: 660 EEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQEQA 719

Query: 384 SWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFL 443
           SWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV  VLKPFE KP F KAARQFL
Sbjct: 720 SWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAARQFL 779

Query: 444 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKE 503
           LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G K 
Sbjct: 780 LKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMGDKS 839

Query: 504 SN 505
            N
Sbjct: 840 QN 841

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726742|ref|XP_003401712.1| PREDICTED: transcription factor RFX3-like [Bombus terrestris]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/485 (58%), Positives = 329/485 (67%), Gaps = 88/485 (18%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
           GNSKYHYYGIRVKP SPL    + +E+G+PR         K++K V    ++  Y +  H
Sbjct: 394 GNSKYHYYGIRVKPSSPL---VMLNEDGTPRQQHGTNSQTKRFKFVNQKQDTT-YENNAH 449

Query: 81  TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
           +    +++N  PQ   H +LG+ S AIP+F          PE            I   H 
Sbjct: 450 SNTNISSNNSPPQ--YHQYLGEASGAIPEF----------PE------------IIVGHG 485

Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
            +  +     D  T  S++RE            CE                         
Sbjct: 486 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 509

Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
                           AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 510 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 553

Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
           + + KC  VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM 
Sbjct: 554 YQMCKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMA 613

Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
            CP+EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQ
Sbjct: 614 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQ 673

Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
           EQASWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV  VLKPFE KP F KAAR
Sbjct: 674 EQASWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAAR 733

Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 734 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMG 793

Query: 501 SKESN 505
            K  N
Sbjct: 794 DKSQN 798

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350424614|ref|XP_003493854.1| PREDICTED: transcription factor RFX3-like [Bombus impatiens]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/525 (55%), Positives = 343/525 (65%), Gaps = 102/525 (19%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
           GNSKYHYYGIRVKP SPL    + +E+G+PR         K++K V    ++  Y +  H
Sbjct: 394 GNSKYHYYGIRVKPSSPL---VMLNEDGTPRQQHGTNSQTKRFKFVNQKQDTT-YENNAH 449

Query: 81  TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
           +    +++N  PQ   H +LG+ S AIP+F          PE            I   H 
Sbjct: 450 SNTNISSNNSPPQ--YHQYLGEASGAIPEF----------PE------------IIVGHG 485

Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
            +  +     D  T  S++RE            CE                         
Sbjct: 486 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 509

Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
                           AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 510 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 553

Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
           + + KC  VQ F+R+VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWLT+AM 
Sbjct: 554 YQMCKCSEVQDFIRKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLTSAMA 613

Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
            CP+EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS+QINQML DLNRVDFHNVQ
Sbjct: 614 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSSQINQMLADLNRVDFHNVQ 673

Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
           EQASWVCQCD ++VQ+LE+DFK+TLQQQNSLE+WA WLK+VV  VLKPFE KP F KAAR
Sbjct: 674 EQASWVCQCDYAMVQRLEADFKVTLQQQNSLEDWAIWLKSVVTQVLKPFEEKPTFAKAAR 733

Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 734 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAVATGTTPIAVMG 793

Query: 501 SKESN-PVESSQNPMDNGLYAHGQNNILVHEELHISHAPKRIKLS 544
            K  N  + S+     NG             +   +  PKR+KLS
Sbjct: 794 DKSQNCSLVSAFGATSNG-------------DASNTSQPKRMKLS 825

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176958|gb|EFN66264.1| Transcription factor RFX3 [Camponotus floridanus]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 280/484 (57%), Positives = 328/484 (67%), Gaps = 85/484 (17%)

Query: 29  GNSKYHYYGIRVKPDSPL-----NNIPLSDENGSPRGKKYKLV--KTDSNSNQYGSEGHT 81
           GNSKYHYYGIRVKP SPL     +      ++ + + K++K V  K +S+ N+  +  +T
Sbjct: 367 GNSKYHYYGIRVKPSSPLLILNEDGTSRQQQSANSQAKRFKFVNQKQESSYNENNAHANT 426

Query: 82  TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCE 141
               +NS+P PQ   H +LG+ S AIPDFPE                      I+  H  
Sbjct: 427 NI-SSNSSP-PQY--HQYLGEASGAIPDFPE----------------------IFIGHDS 460

Query: 142 AFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRV 201
           +  +     D  T  S++RE            CE                          
Sbjct: 461 SLPEDCTLEDIDTFRSIYRE-----------HCE-------------------------- 483

Query: 202 DFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLF 261
                          AFLDA+V  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL+
Sbjct: 484 ---------------AFLDAVVNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKLY 528

Query: 262 CLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQG 321
            + KC  VQ F+++VD+ FYQNLVEVL+P+VLRPIP SLT SIRNFAKG+ESWL +AM G
Sbjct: 529 QMCKCTGVQDFIKKVDYTFYQNLVEVLMPNVLRPIPSSLTQSIRNFAKGLESWLQSAMVG 588

Query: 322 CPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQE 381
           CP+ ++ IK+TAV AFAQ LRRYTSLNHLAQAARAVLQN +QINQMLTDLNRVDFHNVQE
Sbjct: 589 CPEVLMQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNPSQINQMLTDLNRVDFHNVQE 648

Query: 382 QASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQ 441
           QASWVCQCD ++VQ+LE DFK TL+QQNSLE+WA WLK VV  VLKPFE KP F KAARQ
Sbjct: 649 QASWVCQCDYAMVQRLEEDFKSTLRQQNSLEDWAIWLKGVVTRVLKPFEEKPTFAKAARQ 708

Query: 442 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS 501
           FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G 
Sbjct: 709 FLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMGD 768

Query: 502 KESN 505
           K  N
Sbjct: 769 KSQN 772

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800170|gb|EFZ21255.1| hypothetical protein SINV_04732 [Solenopsis invicta]

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 274/480 (57%), Positives = 322/480 (67%), Gaps = 88/480 (18%)

Query: 29  GNSKYHYYGIRVKPDSPLNNIPLSDENGSPR--------GKKYKLVKTDSNSNQYGSEGH 80
           GNSKYHYYGIRVKP SPL+ +   +E+G+ R         K++K V     S+ Y +  H
Sbjct: 369 GNSKYHYYGIRVKPSSPLSVL---NEDGTSRQQQSANSQTKRFKFVNQKQESS-YENNTH 424

Query: 81  TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHC 140
           T    +N++  PQ   H +LG+ S AIP+FPE                      I+  H 
Sbjct: 425 TNTNISNNSSPPQY--HQYLGEASAAIPEFPE----------------------IFISHD 460

Query: 141 EAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRR 200
            +  +     D  T  S++RE            CE                         
Sbjct: 461 SSLPEDCTLEDIDTFRSIYRE-----------HCE------------------------- 484

Query: 201 VDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKL 260
                           AFLDA++  +F+T+ESLWREFWRSQDNNNGDECEEEKYLSK+KL
Sbjct: 485 ----------------AFLDAVLNFEFATVESLWREFWRSQDNNNGDECEEEKYLSKTKL 528

Query: 261 FCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQ 320
           + + +C  VQ F+++VD+ FYQNLV+VL+P+VLRPIP +LT SIRNFAKG+ESWL +AM 
Sbjct: 529 YQMCQCTGVQDFIKKVDYTFYQNLVDVLMPNVLRPIPSTLTQSIRNFAKGLESWLQSAMA 588

Query: 321 GCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQ 380
            CP+EM  IK+TAV AFAQ LRRYTSLNHLAQAARAVLQNS QINQML DLNRVDFHNVQ
Sbjct: 589 DCPEEMTQIKLTAVSAFAQTLRRYTSLNHLAQAARAVLQNSNQINQMLADLNRVDFHNVQ 648

Query: 381 EQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAAR 440
           EQASWVCQCD  +VQ+LE+DFK+TLQQQNSLE+WA WLK VV   LKP E KP F KAAR
Sbjct: 649 EQASWVCQCDYGMVQRLEADFKVTLQQQNSLEDWAIWLKGVVTQALKPHEEKPTFAKAAR 708

Query: 441 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIG 500
           QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVA+ATG TPIAV+G
Sbjct: 709 QFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVAIATGTTPIAVMG 768

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328707503|ref|XP_003243416.1| PREDICTED: DNA-binding protein RFX2-like isoform 2 [Acyrthosiphon pisum] gi|328707505|ref|XP_003243417.1| PREDICTED: DNA-binding protein RFX2-like isoform 3 [Acyrthosiphon pisum]

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 286/491 (58%), Positives = 327/491 (66%), Gaps = 100/491 (20%)

Query: 29  GNSKYHYYGIRVKPDSPLN------NIPLSDENGSPRGKKYKLVKTDS-NSNQYGSEGHT 81
           GNSKYHYYGIR+K  S LN      N+P    N S   KK K +KT+  N NQY      
Sbjct: 346 GNSKYHYYGIRIKASSLLNDFSSEENLP-GRTNQSSSSKKIKFIKTEERNCNQY------ 398

Query: 82  TAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSE------DCLPE--DCTIEDVDTFR 133
               TNS+ S             N+IP  P+    E      + +PE  D  ++++    
Sbjct: 399 ---TTNSSDSANCSQ--------NSIPSSPQAQNQEYLGDGANAVPEFPDIILDEIQ--- 444

Query: 134 SIYREHCEAFLDAIVTL-DFSTIESLWREFWRSQDNNNGDECEEEKYLSKSKLFCLSKCV 192
                     LD   TL D  T ++L+RE +                             
Sbjct: 445 ----------LDDNCTLEDVDTFKNLYREHY----------------------------- 465

Query: 193 PVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEE 252
                                  +AFL AI+ L+F TIESLWREFWRSQDNNN DECEEE
Sbjct: 466 -----------------------EAFLGAILNLEFGTIESLWREFWRSQDNNN-DECEEE 501

Query: 253 KYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVE 312
           KYLSK KL+ LSKC  +Q FV+ VDFLFYQNLV+VLIPDVLRP+PG+LT +IRNF+KG+E
Sbjct: 502 KYLSKEKLYSLSKCKTLQLFVKTVDFLFYQNLVKVLIPDVLRPVPGTLTQAIRNFSKGLE 561

Query: 313 SWLTNAMQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN 372
           SWL +AMQGCP+EMI+IKVTAV AFAQ LRRYTSLNHLAQAARAVLQN TQINQMLTDLN
Sbjct: 562 SWLISAMQGCPEEMISIKVTAVSAFAQTLRRYTSLNHLAQAARAVLQNYTQINQMLTDLN 621

Query: 373 RVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGK 432
           RVDF NVQEQASWVCQCD++LVQQLE+DFK TLQQQNSLEEWA WLK+VV+  LK +   
Sbjct: 622 RVDFRNVQEQASWVCQCDSTLVQQLEADFKHTLQQQNSLEEWATWLKSVVDNCLKQYRDT 681

Query: 433 PNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATG 492
           PNFTK ARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEH+VAL TG
Sbjct: 682 PNFTKEARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHEVALVTG 741

Query: 493 ETPIAVIGSKE 503
           ETPIAV+GS +
Sbjct: 742 ETPIAVMGSGD 752

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	544
UNIPROTKB|A6QLW9	707	RFX2 "DNA-binding protein RFX2	0.551	0.424	0.661	1.6e-111
UNIPROTKB|Q0V9K5	749	rfx3 "Transcription factor RFX	0.593	0.431	0.616	2.7e-111
UNIPROTKB|F1NC32	594	RFX3 "Uncharacterized protein"	0.555	0.508	0.650	9e-111
MGI|MGI:106583	717	Rfx2 "regulatory factor X, 2 (	0.536	0.407	0.665	1.5e-110
UNIPROTKB|P48380	749	RFX3 "Transcription factor RFX	0.588	0.427	0.619	2.4e-110
UNIPROTKB|E2R586	744	RFX2 "Uncharacterized protein"	0.536	0.392	0.668	3e-110
RGD|1588579	692	Rfx2 "regulatory factor X, 2 (	0.536	0.421	0.668	3e-110
UNIPROTKB|E2RAK6	749	RFX3 "Uncharacterized protein"	0.588	0.427	0.619	3e-110
UNIPROTKB|Q4R3I8	749	RFX3 "Transcription factor RFX	0.588	0.427	0.619	3e-110
MGI|MGI:106582	749	Rfx3 "regulatory factor X, 3 (	0.588	0.427	0.613	4.9e-110

UNIPROTKB|A6QLW9 RFX2 "DNA-binding protein RFX2" [Bos taurus (taxid:9913)]

 Score = 1014 (362.0 bits), Expect = 1.6e-111, Sum P(2) = 1.6e-111
 Identities = 205/310 (66%), Positives = 238/310 (76%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNG-------DECEEEKYLSKSKLFCLSKCVP 268
             +A LD ++ L F  IE LW  FW S+ +++G       DE  E   L K KL  L KC P
Sbjct:   383 EATLDVVMNLQFHYIEKLWLSFWNSKSSSDGPTSLPASDEEPEGAVLPKDKLVSLCKCDP 442

Query:   269 VQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMIN 328
             V  ++R  D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM   PQ++I 
Sbjct:   443 VLRWMRTCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMSDFPQQVIQ 502

Query:   329 IKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQ 388
              KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVCQ
Sbjct:   503 TKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVCQ 562

Query:   389 CDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSF 448
             C+  +VQ+LE DFKLTLQQQ+SL++WA+WL NVV  VLK   G P+F KAARQFLLKWSF
Sbjct:   563 CEEGVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWSF 622

Query:   449 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPVE 508
             YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G  E N + 
Sbjct:   623 YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG--EFNDLA 680

Query:   509 S-SQNPMDNG 517
             S S   +D G
Sbjct:   681 SLSLTLLDKG 690

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|Q0V9K5 rfx3 "Transcription factor RFX3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1009 (360.2 bits), Expect = 2.7e-111, Sum P(2) = 2.7e-111
 Identities = 209/339 (61%), Positives = 245/339 (72%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWR---------SQDNNNGDECEEEKYLSKSKLFCLSKC 266
             +A LD +V L FS IE LW+ FWR         S    +G+  E E  L KSKL    K 
Sbjct:   361 EAILDVVVNLQFSLIEKLWQTFWRYSPSSPADGSTITESGNLSEIESRLPKSKLILFCKN 420

Query:   267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
               +  ++   D + YQ+LVE+LIPDVLRPIP +LT ++RNFAK +E WL++AM   PQ M
Sbjct:   421 ESIVKWMCNCDHMMYQSLVEILIPDVLRPIPSALTQAVRNFAKSLEGWLSSAMSNIPQRM 480

Query:   327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
             I  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQEQASWV
Sbjct:   481 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWV 540

Query:   387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
             CQCD S+VQ+LE+DFK+TLQQQ++LE+WA WL NVV   LKP+EG+P+F KAARQFLLKW
Sbjct:   541 CQCDDSMVQRLETDFKMTLQQQSTLEQWAAWLDNVVTQALKPYEGRPSFPKAARQFLLKW 600

Query:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS-KESN 505
             SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGE+PIAV+G   + N
Sbjct:   601 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGESPIAVMGEFGDLN 660

Query:   506 PVESSQNPMDNGLYAHGQNNILVHEELHISHAP--KRIK 542
                      D G     +    + EEL  S  P  KR K
Sbjct:   661 DASPGNMEKDEGSDVESE----IEEELDDSVEPPAKREK 695

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0031018 "endocrine pancreas development" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0050796 "regulation of insulin secretion" evidence=ISS

GO:0060285 "ciliary cell motility" evidence=ISS

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISS

UNIPROTKB|F1NC32 RFX3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1004 (358.5 bits), Expect = 9.0e-111, Sum P(2) = 9.0e-111
 Identities = 203/312 (65%), Positives = 235/312 (75%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQ-----DNNNGDE----CEEEKYLSKSKLFCLSKC 266
             +A LD +V L FS IE LW+ FWR       D    +E     E E  L K+KL  L K 
Sbjct:   207 EAILDVVVNLQFSLIEKLWQTFWRYSPSTPPDGTTVNEPSNLSEIESRLPKAKLITLCKN 266

Query:   267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
               +  ++   D + YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM   PQ M
Sbjct:   267 ESILKWMCNCDHVMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRM 326

Query:   327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
             I  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQEQASWV
Sbjct:   327 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWV 386

Query:   387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
             CQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+P+F KAARQFLLKW
Sbjct:   387 CQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKW 446

Query:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS-KESN 505
             SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G   + N
Sbjct:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFGDLN 506

Query:   506 PVESSQNPMDNG 517
              V       D G
Sbjct:   507 AVSPGNMDKDEG 518

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=IEA

GO:0060285 "ciliary cell motility" evidence=IEA

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IEA

GO:0072560 "type B pancreatic cell maturation" evidence=IEA

GO:2000078 "positive regulation of type B pancreatic cell development" evidence=IEA

MGI|MGI:106583 Rfx2 "regulatory factor X, 2 (influences HLA class II expression)" [Mus musculus (taxid:10090)]

 Score = 1005 (358.8 bits), Expect = 1.5e-110, Sum P(2) = 1.5e-110
 Identities = 201/302 (66%), Positives = 231/302 (76%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQDNNN--------GDECEEEKYLSKSKLFCLSKCV 267
             +A LD ++ L F  IE LW  FW  +  ++         DE  E   L K KL  L KC 
Sbjct:   373 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDSCASLPASDEDPEVTLLPKEKLISLCKCE 432

Query:   268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
             P+  ++R  D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct:   433 PILQWMRSCDHILYQTLVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 492

Query:   328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
               KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct:   493 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 552

Query:   388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
             QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV  VLK   G P+F KAARQFLLKWS
Sbjct:   553 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHSGSPSFPKAARQFLLKWS 612

Query:   448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
             FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G  E N +
Sbjct:   613 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG--EFNDL 670

Query:   508 ES 509
              S
Sbjct:   671 AS 672

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P48380 RFX3 "Transcription factor RFX3" [Homo sapiens (taxid:9606)]

 Score = 1000 (357.1 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
 Identities = 207/334 (61%), Positives = 242/334 (72%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSKC 266
             +A LD +V L FS IE LW+ FWR   +   D           E E  L K+KL  L K 
Sbjct:   362 EAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKH 421

Query:   267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
               +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM   PQ M
Sbjct:   422 ESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRM 481

Query:   327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
             I  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct:   482 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 541

Query:   387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
             CQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+P+F KAARQFLLKW
Sbjct:   542 CQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKW 601

Query:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS-KESN 505
             SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G   + N
Sbjct:   602 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFGDLN 661

Query:   506 PVESSQNPMDNGLYAHGQNNILVHEELHISHAPK 539
              V       D G     +    + EEL  S  P+
Sbjct:   662 AVSPGNLDKDEGSEVESE----MDEELDDSSEPQ 691

GO:0072560 "type B pancreatic cell maturation" evidence=IEA

GO:0005634 "nucleus" evidence=IC

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0060285 "ciliary cell motility" evidence=ISS

GO:0031018 "endocrine pancreas development" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISS

GO:0050796 "regulation of insulin secretion" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0005667 "transcription factor complex" evidence=IC

GO:0048469 "cell maturation" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:2000078 "positive regulation of type B pancreatic cell development" evidence=ISS

UNIPROTKB|E2R586 RFX2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1002 (357.8 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 202/302 (66%), Positives = 234/302 (77%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQ-DNNNG-------DECEEEKYLSKSKLFCLSKCV 267
             +A LD +V L F  IE LW  FW S+  + +G       D   E   L K KL  L KC 
Sbjct:   400 EATLDVVVNLQFHYIEKLWLSFWNSKASSGDGPASLPASDGEPEGAVLPKDKLVSLCKCE 459

Query:   268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
             P+  ++R  D + YQ LVE+LIPDVLRP+P +LT +IRNFAK +E WLTNAM+  PQ++I
Sbjct:   460 PILKWMRNCDHILYQALVEILIPDVLRPVPSTLTQAIRNFAKSLEGWLTNAMRDFPQQVI 519

Query:   328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
               KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct:   520 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 579

Query:   388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
             QC+ S+VQ+LE DFKLTLQQQ+SL++WA+WL NVV  VLK   G P+F KAARQFLLKWS
Sbjct:   580 QCEESVVQRLEQDFKLTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 639

Query:   448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
             FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G  E N +
Sbjct:   640 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAEATGETPIAVMG--EFNDL 697

Query:   508 ES 509
              S
Sbjct:   698 AS 699

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

RGD|1588579 Rfx2 "regulatory factor X, 2 (influences HLA class II expression)" [Rattus norvegicus (taxid:10116)]

 Score = 1002 (357.8 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 202/302 (66%), Positives = 233/302 (77%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQ-DNNNG-------DECEEEKYLSKSKLFCLSKCV 267
             +A LD ++ L F  IE LW  FW  +  +++G       DE  E   L K KL  L KC 
Sbjct:   348 EATLDVVMNLQFQYIEKLWLSFWNCKATSSDGRASLPASDEEPEVTLLPKDKLISLCKCE 407

Query:   268 PVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMI 327
             P+  ++R  D + YQ LVE LIPDVLRP+P SLT +IRNFAK +E WL NAM G PQ++I
Sbjct:   408 PILQWMRSCDHILYQALVETLIPDVLRPVPSSLTQAIRNFAKSLEGWLINAMSGFPQQVI 467

Query:   328 NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVC 387
               KV  V AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWVC
Sbjct:   468 QTKVGVVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWVC 527

Query:   388 QCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWS 447
             QC+ SLVQ+LE DFK+TLQQQ+SL++WA+WL NVV  VLK   G P+F KAARQFLLKWS
Sbjct:   528 QCEESLVQRLEHDFKVTLQQQSSLDQWASWLDNVVTQVLKQHAGSPSFPKAARQFLLKWS 587

Query:   448 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGSKESNPV 507
             FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G  E N +
Sbjct:   588 FYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMG--EFNDL 645

Query:   508 ES 509
              S
Sbjct:   646 AS 647

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E2RAK6 RFX3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 999 (356.7 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 207/334 (61%), Positives = 241/334 (72%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSKC 266
             +A LD +V L FS IE LW+ FWR   +   D           E E  L K+KL  L K 
Sbjct:   362 EAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKH 421

Query:   267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
               +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM   PQ M
Sbjct:   422 ESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRM 481

Query:   327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
             I  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQEQASWV
Sbjct:   482 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWV 541

Query:   387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
             CQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+P+F KAARQFLLKW
Sbjct:   542 CQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKW 601

Query:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS-KESN 505
             SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G   + N
Sbjct:   602 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFGDLN 661

Query:   506 PVESSQNPMDNGLYAHGQNNILVHEELHISHAPK 539
              V       D G     +    + EEL  S  P+
Sbjct:   662 AVSPGNLDKDEGSEVESE----MDEELDDSSEPQ 691

GO:2000078 "positive regulation of type B pancreatic cell development" evidence=IEA

GO:0072560 "type B pancreatic cell maturation" evidence=IEA

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IEA

GO:0060285 "ciliary cell motility" evidence=IEA

GO:0050796 "regulation of insulin secretion" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

UNIPROTKB|Q4R3I8 RFX3 "Transcription factor RFX3" [Macaca fascicularis (taxid:9541)]

 Score = 999 (356.7 bits), Expect = 3.0e-110, Sum P(2) = 3.0e-110
 Identities = 207/334 (61%), Positives = 241/334 (72%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSKC 266
             +A LD +V L FS IE LW+ FWR   +   D           E E  L K+KL  L K 
Sbjct:   362 EAILDVVVNLQFSLIEKLWQTFWRYSPSTPTDGTTITESSNLSEIESRLPKAKLITLCKH 421

Query:   267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
               +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM   PQ M
Sbjct:   422 ESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRM 481

Query:   327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
             I  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML DLNRVDF NVQEQASWV
Sbjct:   482 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLNDLNRVDFANVQEQASWV 541

Query:   387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
             CQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+P+F KAARQFLLKW
Sbjct:   542 CQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKW 601

Query:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS-KESN 505
             SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA ATGETPIAV+G   + N
Sbjct:   602 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQATGETPIAVMGEFGDLN 661

Query:   506 PVESSQNPMDNGLYAHGQNNILVHEELHISHAPK 539
              V       D G     +    + EEL  S  P+
Sbjct:   662 AVSPGNLDKDEGSEVESE----MDEELDDSSEPQ 691

GO:0006351 "transcription, DNA-dependent" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0031018 "endocrine pancreas development" evidence=ISS

GO:0044212 "transcription regulatory region DNA binding" evidence=ISS

GO:0050796 "regulation of insulin secretion" evidence=ISS

GO:0060285 "ciliary cell motility" evidence=ISS

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=ISS

MGI|MGI:106582 Rfx3 "regulatory factor X, 3 (influences HLA class II expression)" [Mus musculus (taxid:10090)]

 Score = 997 (356.0 bits), Expect = 4.9e-110, Sum P(2) = 4.9e-110
 Identities = 205/334 (61%), Positives = 241/334 (72%)

Query:   216 DAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC---------EEEKYLSKSKLFCLSKC 266
             +A LD +V L FS IE LW+ FWR   +   D           E E  L K+KL  L K 
Sbjct:   362 EAILDVVVNLQFSLIEKLWQTFWRYSPSTPADGTTITESSNLSEIESRLPKAKLITLCKH 421

Query:   267 VPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEM 326
               +  ++   D   YQ LVE+LIPDVLRPIP +LT +IRNFAK +E WL+NAM   PQ M
Sbjct:   422 ESILKWMCNCDHGMYQALVEILIPDVLRPIPSALTQAIRNFAKSLEGWLSNAMNNIPQRM 481

Query:   327 INIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWV 386
             I  KV AV AFAQ LRRYTSLNHLAQAARAVLQN++QINQML+DLNRVDF NVQEQASWV
Sbjct:   482 IQTKVAAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQMLSDLNRVDFANVQEQASWV 541

Query:   387 CQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNFTKAARQFLLKW 446
             CQCD ++VQ+LE+DFK+TLQQQ++LE+WA WL NV+   LKP+EG+P+F KAARQFLLKW
Sbjct:   542 CQCDDNMVQRLETDFKMTLQQQSTLEQWAAWLDNVMMQALKPYEGRPSFPKAARQFLLKW 601

Query:   447 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGETPIAVIGS-KESN 505
             SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYL+EH+VA  TGETPIAV+G   + N
Sbjct:   602 SFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHRVAQVTGETPIAVMGEFGDLN 661

Query:   506 PVESSQNPMDNGLYAHGQNNILVHEELHISHAPK 539
              V       D G     + +    E+L  S  P+
Sbjct:   662 AVSPGNLDKDEGSEVESETD----EDLDDSSEPR 691

GO:0000790 "nuclear chromatin" evidence=ISO;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IC

GO:0006351 "transcription, DNA-dependent" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0030154 "cell differentiation" evidence=IEA

GO:0031018 "endocrine pancreas development" evidence=IMP

GO:0042384 "cilium assembly" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO;IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0048469 "cell maturation" evidence=IMP

GO:0050796 "regulation of insulin secretion" evidence=IMP

GO:0060285 "ciliary cell motility" evidence=IMP

GO:0060287 "epithelial cilium movement involved in determination of left/right asymmetry" evidence=IMP

GO:0072560 "type B pancreatic cell maturation" evidence=IMP

GO:2000078 "positive regulation of type B pancreatic cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0V9K5	RFX3_XENTR	No assigned EC number	0.5020	0.7242	0.5260	yes	N/A
P48380	RFX3_HUMAN	No assigned EC number	0.5020	0.7261	0.5273	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	544
KOG3712|consensus	736		100.0
KOG3712|consensus	736		99.97
PF02257	85	RFX_DNA_binding: RFX DNA-binding domain; InterPro:	98.55

>KOG3712|consensus

Probab=100.00  E-value=7.9e-93  Score=774.20  Aligned_cols=412  Identities=49%  Similarity=0.782  Sum_probs=366.6

Q ss_pred             CcCCCCCCCCcccccccccCCCCCCCCCCCCC------CCCCCCCCcccccc-CCCCCCCCCCCCCccCCCCCCCCCCCC
Q psy7163          22 PLSDENGGNSKYHYYGIRVKPDSPLNNIPLSD------ENGSPRGKKYKLVK-TDSNSNQYGSEGHTTAGQTNSNPSPQS   94 (544)
Q Consensus        22 ~~rlgtrg~skyhYygiRiKp~S~~~r~~~~~------~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~   94 (544)
                      +|||||||||||||||||+||+|+++++++++      ++|+++++| .+.+ +++.+...+......+++....-|.+ 
T Consensus       257 TRRLGtRGqSKYHYyGirvk~~ss~~sl~~d~~~~~~~~qP~~~~qr-~p~q~~~~~~ps~s~~~~~~S~~~~~~~q~~-  334 (736)
T KOG3712|consen  257 TRRLGTRGQSKYHYYGIRVKPSSSLSSLQEDQKYMAMRQQPMQQSQR-MPLQKPSSVTPSGSPQLVPASVEQTVNLQSQ-  334 (736)
T ss_pred             hhhcccCCCCceeeeeeecCCCCcccccccccccccccCCccccccc-CccccCCcCCCCCCcccCccccchhhcHHHH-
Confidence            89999999999999999999999999998887      478888877 4544 33333311111111122223333444 


Q ss_pred             ccccccCCCCCCCCCCCccCcCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCCChh
Q psy7163          95 GNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWREFWRSQDNNNGDEC  174 (544)
Q Consensus        95 ~~~~~lg~~~~~~Pdfp~~~l~~~~lp~~~~~~~v~~~~~~y~~hc~~vld~v~~~~f~~~~~fW~~fw~~~~~~~~~~~  174 (544)
                      +++++. +.+..+|+||++++.+  +|.+++..+++.|..+|++||+++++++.+++|+++|++|..||........+  
T Consensus       335 ~~~q~~-~~~~~lP~~p~l~~~s--~p~s~~~~dl~~~~~~~~~h~~a~~~~~~~~~~~liE~~~~~~~k~~ls~~~~--  409 (736)
T KOG3712|consen  335 QYQQSF-DVSHVLPEFPELDLLS--LPASLPAIDLKALGPAYREHCEAILDVVPNLQFDLIEKVWLKFWKLSLSEISD--  409 (736)
T ss_pred             hhcccc-cchhcCcccCCccccc--CcccCChhhcccccchhhhhhHHHHhHHHhcchhhHHHHHHHhhhhhhccccc--
Confidence            555777 8899999999998875  89999999999999999999999999999999999999999999965332111  


Q ss_pred             hhhhhhhhhhhhcccccchhhhHHhhchhhhhhhhHHhccCCchhhhhhhcchhhHHHHHHHHHhhccCCCCCcchhhhh
Q psy7163         175 EEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDNNNGDECEEEKY  254 (544)
Q Consensus       175 ~~~~~lp~~~L~~Lc~~~~v~~~v~~cD~~lyq~lv~vLiP~vl~~~~~t~~f~~ve~~lr~FW~~~~~~~~~~~~~e~~  254 (544)
                                                                          +. +++.              .++.|..
T Consensus       410 ----------------------------------------------------~p-~~~~--------------~~~~~~~  422 (736)
T KOG3712|consen  410 ----------------------------------------------------GP-ILSN--------------PSDLEAR  422 (736)
T ss_pred             ----------------------------------------------------Cc-cccc--------------chhhhhc
Confidence                                                                00 1112              2333456


Q ss_pred             hhhhhhhhccCChhHHHHHHHhHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy7163         255 LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLTNAMQGCPQEMINIKVTAV  334 (544)
Q Consensus       255 lp~~kL~~L~~~~~V~~wI~~CD~ilYq~Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~~Al~~lP~~lv~~Kl~~a  334 (544)
                      ++..||..+|.++.|.+||+.||.+||++++++|+|+||+++|..+++.||+|||+|+.||.+++.++|..+++.|.++|
T Consensus       423 ~~~p~L~al~~~~~v~~~v~~~d~~LY~~i~~~liP~vL~~~p~~ltq~ir~fAksL~~~Ls~~~aslp~~~~~~K~~aa  502 (736)
T KOG3712|consen  423 LDKPKLLALCRSDSVVKWVISCDNILYQAIVEILIPDVLQPLPSSLTQLIRNFAKSLDPWLSNALASLPESLRQTKVEAA  502 (736)
T ss_pred             CCccccccccCchhHHHHHhhhhHHHHHHHHHHhhhhhhccCChhHHHHHHhhhHHHHHHHHHHHhhccHHHHhhhHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHccChhhHHHHHHHhhccChhhHHhhhcccccCchHHHHHHHHHHHHhhcccccHHHH
Q psy7163         335 GAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLNRVDFHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEW  414 (544)
Q Consensus       335 ~~F~qlLrR~tsLnhlAqAAr~vL~n~~~i~qM~~Dw~rVDf~~I~eQa~~~~~C~~~vv~~l~~~fk~lL~~~~~le~~  414 (544)
                      ++|+++|||+|+|||+|||||+||+|++++++|+.||+|||+++|++|+.|+|.|++.+|++++.+||.+|+.++.+|.|
T Consensus       503 ~~f~q~L~r~tslnhla~asr~vl~n~~~~~qml~D~~rvd~~~vq~q~~wv~~c~~~~V~~~~~~fK~~lq~~s~ie~~  582 (736)
T KOG3712|consen  503 SYFSQILRRYTSLNHLAQASRGVLQNPEQTQQMLSDWRRVDKANVQEQASWVCRCDEVMVQRLEQDFKHLLQQQSDIEVW  582 (736)
T ss_pred             HHHHHHHhhhcccccccccchhhcCCHHHHHHHHHHHhhcchhhhhcchhhhhccccHHHhhhhhhhhHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHhHhhhCCC
Q psy7163         415 ANWLKNVVNAVLKPFEGKPNFTKAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLIEHQVALATGET  494 (544)
Q Consensus       415 a~wLd~lv~~vl~p~~~~~~f~~~ar~FlL~Ws~~sS~ViRdLTLrsA~SFGSfhLirll~DEYm~~lvE~~va~~~~~~  494 (544)
                      |+|||++++|+++++.++++|++.+|+|+|+||||+|+|||||||+||+||||||+||||+||||+|++|+|+++++|++
T Consensus       583 a~wld~vv~r~~~~~~~~p~~~~~~~qfLl~ws~~sS~virdltl~sa~sFgsf~lirl~~DeyM~yl~e~~~~~~~~~~  662 (736)
T KOG3712|consen  583 AEWLDSVVDRMLKKYAGSPSLPKVARQFLLKWSFYSSMVIRDLTLRSAESFGSFHLIRLLADEYMYYLIESGIAQAGGNE  662 (736)
T ss_pred             HHHHHHHHHHHhhhhccCCCcccHHHHHHHHhhhcccchhHhhhhhccccccchhhhhhhhhhhhhhhhccchhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceecccCCCCCC
Q psy7163         495 PIAVIGSKESNPV  507 (544)
Q Consensus       495 ~~~~~~~~~~~~~  507 (544)
                      ||+|||+|.+++.
T Consensus       663 ~i~~~~~~~~~~~  675 (736)
T KOG3712|consen  663 PIAVMGAFASLKS  675 (736)
T ss_pred             HHHHHhhhccccc
Confidence            9999999999976

>KOG3712|consensus

Probab=99.97  E-value=6.8e-31  Score=288.59  Aligned_cols=340  Identities=20%  Similarity=0.235  Sum_probs=246.3

Q ss_pred             CCCcceeeeeEeCCCCCCCCCCcCCCCCCCCcccccccccCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCC
Q psy7163           1 GNSKYHYYGIRVKPDSPLNNIPLSDENGGNSKYHYYGIRVKPDSPLNNIPLSDENGSPRGKKYKLVKTDSNSNQYGSEGH   80 (544)
Q Consensus         1 gnskyhyyg~r~kp~sPlnr~~~rlgtrg~skyhYygiRiKp~S~~~r~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~   80 (544)
                      |||||||||||+||+||+++++        ++..||++|.+|+++.+|.+      .+  +..+.+++.+......+...
T Consensus       264 GqSKYHYyGirvk~~ss~~sl~--------~d~~~~~~~~qP~~~~qr~p------~q--~~~~~~ps~s~~~~~~S~~~  327 (736)
T KOG3712|consen  264 GQSKYHYYGIRVKPSSSLSSLQ--------EDQKYMAMRQQPMQQSQRMP------LQ--KPSSVTPSGSPQLVPASVEQ  327 (736)
T ss_pred             CCCceeeeeeecCCCCcccccc--------cccccccccCCcccccccCc------cc--cCCcCCCCCCcccCccccch
Confidence            9999999999999999999988        88889999999999999933      22  22233443333333334444


Q ss_pred             ccCCCCCCCCCCCCccccccCCCCCCCCCCCccCcCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHh
Q psy7163          81 TTAGQTNSNPSPQSGNHNFLGDGSNAIPDFPEIDLSEDCLPEDCTIEDVDTFRSIYREHCEAFLDAIVTLDFSTIESLWR  160 (544)
Q Consensus        81 ~~~~~~~~~~q~~~~~~~~lg~~~~~~Pdfp~~~l~~~~lp~~~~~~~v~~~~~~y~~hc~~vld~v~~~~f~~~~~fW~  160 (544)
                      +...|+++.+|..+.++..+   .++-+|.-+  |+...-+.++..-- ..+.+||......+....+++.++.|..||+
T Consensus       328 ~~~~q~~~~~q~~~~~~~lP---~~p~l~~~s--~p~s~~~~dl~~~~-~~~~~h~~a~~~~~~~~~~~liE~~~~~~~k  401 (736)
T KOG3712|consen  328 TVNLQSQQYQQSFDVSHVLP---EFPELDLLS--LPASLPAIDLKALG-PAYREHCEAILDVVPNLQFDLIEKVWLKFWK  401 (736)
T ss_pred             hhcHHHHhhcccccchhcCc---ccCCccccc--CcccCChhhccccc-chhhhhhHHHHhHHHhcchhhHHHHHHHhhh
Confidence            55556666667777888888   777777655  45544455554222 3488999999999999999999999999999


Q ss_pred             hhccCCCCC--CCChhhhhhhhhhhhhhcccccchhhhHHhhchhhhhhhhHHhccCCchhhhhhhcchhhHHHHHHHHH
Q psy7163         161 EFWRSQDNN--NGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFW  238 (544)
Q Consensus       161 ~fw~~~~~~--~~~~~~~~~~lp~~~L~~Lc~~~~v~~~v~~cD~~lyq~lv~vLiP~vl~~~~~t~~f~~ve~~lr~FW  238 (544)
                      -+-....+.  .+..++.+.++++++|.+||+++.|++||+.||++|||++|++|||+||+..+.+     +.-.+|+|.
T Consensus       402 ~~ls~~~~~p~~~~~~~~~~~~~~p~L~al~~~~~v~~~v~~~d~~LY~~i~~~liP~vL~~~p~~-----ltq~ir~fA  476 (736)
T KOG3712|consen  402 LSLSEISDGPILSNPSDLEARLDKPKLLALCRSDSVVKWVISCDNILYQAIVEILIPDVLQPLPSS-----LTQLIRNFA  476 (736)
T ss_pred             hhhcccccCcccccchhhhhcCCccccccccCchhHHHHHhhhhHHHHHHHHHHhhhhhhccCChh-----HHHHHHhhh
Confidence            653322211  2445667779999999999999999999999999999999999999999988876     556899999


Q ss_pred             hhccCCCCCcchhhhhhhhhhhhhccCChhHHHHHHHhHHHHHHH--HHHHhcccccccCChhHHHHHHHHHHHHHHHHH
Q psy7163         239 RSQDNNNGDECEEEKYLSKSKLFCLSKCVPVQAFVRRVDFLFYQN--LVEVLIPDVLRPIPGSLTSSIRNFAKGVESWLT  316 (544)
Q Consensus       239 ~~~~~~~~~~~~~e~~lp~~kL~~L~~~~~V~~wI~~CD~ilYq~--Lv~~Lip~vLq~VP~~ll~~IR~FAk~Le~wL~  316 (544)
                      +++++               .|.+.+.+.+...|...|+.+.|=.  +-+...=+.+......+++.-...-+-+.+|.+
T Consensus       477 ksL~~---------------~Ls~~~aslp~~~~~~K~~aa~~f~q~L~r~tslnhla~asr~vl~n~~~~~qml~D~~r  541 (736)
T KOG3712|consen  477 KSLDP---------------WLSNALASLPESLRQTKVEAASYFSQILRRYTSLNHLAQASRGVLQNPEQTQQMLSDWRR  541 (736)
T ss_pred             HHHHH---------------HHHHHHhhccHHHHhhhHHHHHHHHHHHhhhcccccccccchhhcCCHHHHHHHHHHHhh
Confidence            99974               3455666788999999999987633  222333333556777888888888888999988


Q ss_pred             --HH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccChhhHHHHHHHhh-ccChhhHHhhhc
Q psy7163         317 --NA-MQGCPQEMINIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQNSTQINQMLTDLN-RVDFHNVQEQAS  384 (544)
Q Consensus       317 --~A-l~~lP~~lv~~Kl~~a~~F~qlLrR~tsLnhlAqAAr~vL~n~~~i~qM~~Dw~-rVDf~~I~eQa~  384 (544)
                        .+ .+..-..+.+.+...+..|-+..+..+..-..-......|  ...+.+|+.+|. +..+.++.+|-.
T Consensus       542 vd~~~vq~q~~wv~~c~~~~V~~~~~~fK~~lq~~s~ie~~a~wl--d~vv~r~~~~~~~~p~~~~~~~qfL  611 (736)
T KOG3712|consen  542 VDKANVQEQASWVCRCDEVMVQRLEQDFKHLLQQQSDIEVWAEWL--DSVVDRMLKKYAGSPSLPKVARQFL  611 (736)
T ss_pred             cchhhhhcchhhhhccccHHHhhhhhhhhHHHHhhhHHHHHHHHH--HHHHHHHhhhhccCCCcccHHHHHH
Confidence              33 3334445555577777776666655554332222222333  356789999996 788888877644

>PF02257 RFX_DNA_binding: RFX DNA-binding domain; InterPro: IPR003150 RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression

Probab=98.55  E-value=1.3e-08  Score=87.01  Aligned_cols=22  Identities=55%  Similarity=0.890  Sum_probs=16.7

Q ss_pred             CcCCCCCCCCcccccccccCCC
Q psy7163          22 PLSDENGGNSKYHYYGIRVKPD   43 (544)
Q Consensus        22 ~~rlgtrg~skyhYygiRiKp~   43 (544)
                      +|||||||+|||||+|||+|++
T Consensus        63 ~RRLG~RG~SkYhY~Gir~k~~   84 (85)
T PF02257_consen   63 TRRLGTRGQSKYHYCGIRLKPD   84 (85)
T ss_dssp             EEEESSTT--EEEEEEEEE---
T ss_pred             ccccccCCCcceEEEeEEecCC
Confidence            7999999999999999999986

The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DP7_P 2KW3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	544
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 9e-10
 Identities = 51/379 (13%), Positives = 100/379 (26%), Gaps = 97/379 (25%)

Query: 186 FCLSKCVPV--QAFVRRVDFLFYQNLVEVLIPDAFLDAIVTLDFSTIESLWREFWRSQDN 243
           +     + V   AFV   D    Q++ + ++    +D I+      +    R FW     
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK-DAVSGTLRLFWTLLSK 74

Query: 244 NNG------DECEEEKY---LSKSKLFCLSKCVPVQAFVRRVDFLFYQNLVEVLIP-DV- 292
                    +E     Y   +S  K       +  + ++ + D L+  N  +V    +V 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVS 132

Query: 293 --------------LRPIPG------------SLTSSI-------RNFAKGVESWLTNAM 319
                         LRP                +   +             +  WL    
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNLKN 191

Query: 320 QGCPQEMI----NIKVTAVGAFAQMLRRYTSLNHLAQAARAVLQN---STQINQMLTDLN 372
              P+ ++     +       +       +++     + +A L+    S      L  L 
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL- 250

Query: 373 RVDFHNVQEQASWV-------CQC-----DASLVQQLES---------DFKLTLQQQNSL 411
                NVQ   +         C+         +   L +            +TL      
Sbjct: 251 --L--NVQN--AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 412 EEWANWLKNVVNAVLKPFE---GKPN----FTKAARQFLLKWSFYSSMVIRDLTLRSAAS 464
                +L      +  P E     P       ++ R  L  W  +  +    LT    +S
Sbjct: 305 SLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 465 FGSF--HLIRLLYDEY-MF 480
                    R ++D   +F
Sbjct: 363 LNVLEPAEYRKMFDRLSVF 381

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 3e-09
 Identities = 74/525 (14%), Positives = 149/525 (28%), Gaps = 153/525 (29%)

Query: 98  NFLGD-GSNAIPDFPEIDLS----EDCLPEDCTIEDV----DTFRSIYREHCEAFLDAIV 148
            F+ +     + D P+  LS    +  +     +        T  S   E  + F++ ++
Sbjct: 28  AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 149 TLDFSTIESLWR-------------EFWRSQDNNNGDE------CEEEKYLS-KSKLFCL 188
            +++  + S  +                R +  N+            + YL  +  L  L
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 189 S--------------KCVPV------QAFVRRVDF-LFYQNLVEVLIPDAFLDAIVTLDF 227
                          K               ++DF +F+ NL     P+  L+ +  L  
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-L 206

Query: 228 STIESLWREFWRSQDN---NNGDECEEEKYLSKSKLF--CL--------SKCVPVQAFVR 274
             I+  W        N          E + L KSK +  CL        +K     AF  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAF-- 262

Query: 275 RVDF----LF---YQNLVEVLIPDVLRPIP-----GSLTS--SIRNFAKGVESWLTNAMQ 320
             +     L    ++ + + L       I       +LT         K    +L    Q
Sbjct: 263 --NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK----YLDCRPQ 316

Query: 321 GCPQEMINIKVTAVGAFAQMLR----RYTSLNHLAQAA-RAVLQNSTQINQMLTDLNRVD 375
             P+E++      +   A+ +R     + +  H+       ++++S  +N +     R  
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYRKM 374

Query: 376 FHNVQEQASWVCQCDASLVQQLESDFKLTLQQQNSLEEWANWLKNVVNAVLKPFEGKPNF 435
           F               S+         +     + +  W + +K+ V  V+         
Sbjct: 375 FD------------RLSV---FPPSAHIPTILLSLI--WFDVIKSDVMVVVNKLHKY--- 414

Query: 436 TKAARQFLLKWSFYSSMVIRDLTLRSAASF---GSFHLIRLLYDEYMFYLIEHQVALATG 492
                  + K    S++ I  + L          + H  R + D Y              
Sbjct: 415 -----SLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIP----------- 456

Query: 493 ETPIAVIGSKESNPVESSQNPMDNGLYAHGQNNILVHEELHISHA 537
                    K  +  +     +D   Y+H     + H   H+ + 
Sbjct: 457 ---------KTFDSDDLIPPYLDQYFYSH-----IGH---HLKNI 484

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	544
1dp7_P	76	MHC class II transcription factor HRFX1; winged he	98.56

>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20

Probab=98.56  E-value=8.7e-09  Score=85.23  Aligned_cols=21  Identities=52%  Similarity=0.925  Sum_probs=20.5

Q ss_pred             CcCCCCCCCCcccccccccCC
Q psy7163          22 PLSDENGGNSKYHYYGIRVKP   42 (544)
Q Consensus        22 ~~rlgtrg~skyhYygiRiKp   42 (544)
                      +|||||||+|||||+|||+||
T Consensus        56 trRLg~rG~skyhy~Girlk~   76 (76)
T 1dp7_P           56 TRRLGTRGNSKYHYYGLRIKA   76 (76)
T ss_dssp             EEEESSTTCCEEEEEEEEECC
T ss_pred             eeeccccCCccEEEEeeEeCC
Confidence            899999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	544
d1dp7p_	76	Class II MHC transcription factor RFX1 {Human (Hom	98.27

>d1dp7p_ a.4.5.20 (P:) Class II MHC transcription factor RFX1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: P4 origin-binding domain-like
domain: Class II MHC transcription factor RFX1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.3e-08  Score=78.59  Aligned_cols=21  Identities=52%  Similarity=0.925  Sum_probs=19.9

Q ss_pred             CcCCCCCCCCcccccccccCC
Q psy7163          22 PLSDENGGNSKYHYYGIRVKP   42 (544)
Q Consensus        22 ~~rlgtrg~skyhYygiRiKp   42 (544)
                      +|||||||+|||||+|||+|.
T Consensus        56 ~RRLg~rG~skYhY~Gir~ka   76 (76)
T d1dp7p_          56 TRRLGTRGNSKYHYYGLRIKA   76 (76)
T ss_dssp             EEEESSTTCCEEEEEEEEECC
T ss_pred             eeecCCCCCceEEEeeeEecC
Confidence            899999999999999999983