Psyllid ID: psy7177

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVEVSGP
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccccccEEEEcccccEEEccccccccccEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccEEEEEEccccccEEEEcccccccccccccccccEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mcvrpskgvsaghytaytlhpntkewhyfndetvleqrpqdedfnNAYILFYkkrdedsdvevsgp
Flexible Loop (DISEMBL)
mcvrpskgvsaghytaytlhpntkEWHYFNDETVLEQRPQDEDFNNAYILFykkrdedsdvevsgp
Low Complexity Region (SEG)
MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVEVSGP
Disordered region (IsUnstruct)
**********AGHYTAYTLHPNTKEWHYFNDETVLEQR**DEDFNNAYILFY**************
Disordered Region (DISOPRED)
MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQR***EDFNNAYILFY**************
Disordered Region (DISEMBL)
*********SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD**********
Disordered Region (DISPRO)
MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVEVSGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
O75604	605	Ubiquitin carboxyl-termin	yes	N/A	0.651	0.071	0.465	4e-05
Q5U349	618	Ubiquitin carboxyl-termin	yes	N/A	0.651	0.069	0.465	7e-05
O88623	613	Ubiquitin carboxyl-termin	yes	N/A	0.651	0.070	0.465	7e-05
P35125	1406	Ubiquitin carboxyl-termin	no	N/A	0.742	0.034	0.42	0.0001
Q91W36	520	Ubiquitin carboxyl-termin	no	N/A	0.878	0.111	0.4	0.0001
Q8NFA0	1604	Ubiquitin carboxyl-termin	no	N/A	0.742	0.030	0.4	0.0002
Q8BUM9	1132	Ubiquitin carboxyl-termin	no	N/A	0.727	0.042	0.395	0.0004
Q99K46	921	Ubiquitin carboxyl-termin	no	N/A	0.742	0.053	0.346	0.0004
Q70EL4	1123	Ubiquitin carboxyl-termin	no	N/A	0.727	0.042	0.395	0.0004
P51784	963	Ubiquitin carboxyl-termin	no	N/A	0.742	0.050	0.346	0.0004

>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 11  AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
            GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 555 GGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 597

Hydrolase that deubiquitinates polyubiquitinated target proteins such as MDM2, MDM4 and CCND1. Isoform 1 and isoform 4 possess both ubiquitin-specific peptidase and isopeptidase activities. Deubiquitinates MDM2 without reversing MDM2-mediated p53/TP53 ubiquitination and thus indirectly promotes p53/TP53 degradation and limits p53 activity. Has no deubiquitinase activity against p53/TP53. Prevents MDM2-mediated degradation of MDM4. Plays a role in the G1/S cell-cycle progression in normal and cancer cells. Plays a role in the regulation of myogenic differentiation of embryonic muscle cells.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus GN=Usp2 PE=1 SV=1

 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 11  AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
            GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 568 GGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 610

Hydrolase that deubiquitinates polyubiquitinated target proteins such as MDM2, MDM4 and CCND1. Deubiquitinates MDM2 without reversing MDM2-mediated p53/TP53 ubiquitination and thus indirectly promotes p53/TP53 degradation and limits p53 activity. Has no deubiquitinase activity against p53/TP53. Prevents MDM2-mediated degradation of MDM4. Plays a role in the G1/S cell-cycle progression in normal and cancer cells (By similarity). Isoform 1 and isoform 2 possess both ubiquitin-specific peptidase and isopeptidase activities. Plays a role in the regulation of myogenic differentiation of embryonic muscle cells.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2 PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 11  AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
            GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 563 GGHYTAYCRSPVTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 605

Hydrolase that deubiquitinates polyubiquitinated target proteins such as MDM2, MDM4 and CCND1. Isoform 1 and isoform 2 possess both ubiquitin-specific peptidase and isopeptidase activities. Deubiquitinates MDM2 without reversing MDM2-mediated p53/TP53 ubiquitination and thus indirectly promotes p53/TP53 degradation and limits p53 activity. Has no deubiquitinase activity against p53/TP53. Prevents MDM2-mediated degradation of MDM4. Plays a role in the G1/S cell-cycle progression in normal and cancer cells. Plays a role in the regulation of myogenic differentiation of embryonic muscle cells.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P35125|UBP6_HUMAN Ubiquitin carboxyl-terminal hydrolase 6 OS=Homo sapiens GN=USP6 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 9    VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
            +S GHY  Y  +PN K W+ +ND +  E  P + D ++AYILFY+++  D
Sbjct: 1324 LSGGHYITYAKNPNCK-WYCYNDSSCEELHPDEIDTDSAYILFYEQQGID 1372

Deubiquitinase with an ATP-independent isopeptidase activity, cleaving at the C-terminus of the ubiquitin moiety. Catalyzes its own deubiquitination. In vitro, isoform 2, but not isoform 3, shows deubiquitinating activity. Promotes plasma membrane localization of ARF6 and selectively regulates ARF6-dependent endocytic protein trafficking. Is able to initiate tumorigenesis by inducing the production of matrix metalloproteinases following NF-kappa-B activation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 3   VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
           V    GV +GHYTAY +H     W +FND TV     +      AYILFY +R   +  E
Sbjct: 461 VHHGSGVGSGHYTAYAVHEG--RWFHFNDSTVTVTDEETVGKAKAYILFYVERQARAGAE 518

Hydrolase that deubiquitinates monoubiquitinated target proteins such as histone H2A and H2B. Required for proper progression through S phase and subsequent mitotic entry. May regulate the DNA damage response (DDR) checkpoint through deubiquitination of H2A at DNA damage sites. Associates with the chromatin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8NFA0|UBP32_HUMAN Ubiquitin carboxyl-terminal hydrolase 32 OS=Homo sapiens GN=USP32 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 9    VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
            +  GHY  Y  +PN K W+ +ND +  E  P + D ++AYILFY+++  D
Sbjct: 1522 LGGGHYVTYAKNPNCK-WYCYNDSSCKELHPDEIDTDSAYILFYEQQGID 1570

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8BUM9|UBP43_MOUSE Ubiquitin carboxyl-terminal hydrolase 43 OS=Mus musculus GN=Usp43 PE=2 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 9   VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
           +  GHYTAY  +    +W+ ++D TV   R  + +   AYILFY+KR+
Sbjct: 664 LQGGHYTAYCRNSLDGQWYSYDDSTVEALREDEVNTRGAYILFYQKRN 711

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11 PE=2 SV=4

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
           G+  GHYT +  + ++ +WHYF+D +V        +   AY+LFY+++D
Sbjct: 842 GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQD 890

Protease that can remove conjugated ubiquitin from target proteins and polyubiquitin chains. Inhibits the degradation of target proteins by the proteasome. Plays a role in the regulation of pathways leading to NF-kappa-B activation. Plays a role in the regulation of DNA repair after double-stranded DNA breaks.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q70EL4|UBP43_HUMAN Ubiquitin carboxyl-terminal hydrolase 43 OS=Homo sapiens GN=USP43 PE=1 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 29/48 (60%)

Query: 9   VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
           +  GHYTAY  +    +W+ ++D TV   R  + +   AYILFY+KR+
Sbjct: 664 LQGGHYTAYCRNSLDGQWYSYDDSTVEPLREDEVNTRGAYILFYQKRN 711

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11 PE=1 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 30/49 (61%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD 56
           G+  GHYT +  + ++ +WHYF+D +V        +   AY+LFY+++D
Sbjct: 883 GMRDGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQD 931

Protease that can remove conjugated ubiquitin from target proteins and polyubiquitin chains. Inhibits the degradation of target proteins by the proteasome. Plays a role in the regulation of pathways leading to NF-kappa-B activation. Plays a role in the regulation of DNA repair after double-stranded DNA breaks.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
321475567	1180	hypothetical protein DAPPUDRAFT_307840 [	0.712	0.039	0.659	7e-13
242007158	845	predicted protein [Pediculus humanus cor	0.818	0.063	0.592	2e-12
307183092	1048	Ubiquitin carboxyl-terminal hydrolase 32	0.818	0.051	0.611	5e-12
332024377	1053	Ubiquitin carboxyl-terminal hydrolase 32	0.818	0.051	0.611	6e-12
307213501	1054	Ubiquitin carboxyl-terminal hydrolase 32	0.818	0.051	0.611	6e-12
383858846	1050	PREDICTED: uncharacterized protein LOC10	0.818	0.051	0.611	7e-12
345487479	1022	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.818	0.052	0.592	1e-11
350396230	1052	PREDICTED: ubiquitin carboxyl-terminal h	0.818	0.051	0.592	2e-11
328715747	898	PREDICTED: ubiquitin carboxyl-terminal h	0.893	0.065	0.516	1e-10
260807898	1291	hypothetical protein BRAFLDRAFT_95861 [B	0.818	0.041	0.481	2e-09

>gi|321475567|gb|EFX86529.1| hypothetical protein DAPPUDRAFT_307840 [Daphnia pulex]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/47 (65%), Positives = 41/47 (87%)

Query: 9    VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
             S+GHYTAYT H N+K+WHY+NDETVL + PQDEDF++ Y+LFY++R
Sbjct: 1117 ASSGHYTAYTRHVNSKDWHYYNDETVLSRAPQDEDFSHGYVLFYQRR 1163

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007158|ref|XP_002424409.1| predicted protein [Pediculus humanus corporis] gi|212507809|gb|EEB11671.1| predicted protein [Pediculus humanus corporis]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 2   CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
           CV    G SAGHYTAY  +P + +WH FNDETV  Q+PQ++DF NAY+LFY+K+
Sbjct: 725 CVNHFGGASAGHYTAYAKNPQSGDWHLFNDETVTAQKPQEDDFCNAYVLFYQKQ 778

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183092|gb|EFN70009.1| Ubiquitin carboxyl-terminal hydrolase 32 [Camponotus floridanus]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            CV    GVSAGHYTAY  +P T  W+Y+NDE   +Q+PQDEDF+NAYILFY ++
Sbjct: 986  CVCHFGGVSAGHYTAYAKNPRTDVWYYYNDEITSKQKPQDEDFSNAYILFYSRQ 1039

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024377|gb|EGI64575.1| Ubiquitin carboxyl-terminal hydrolase 32 [Acromyrmex echinatior]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            CV    GVSAGHYTAY  +P T  W+Y+NDE    Q+PQDEDF+NAYILFY ++
Sbjct: 991  CVCHFGGVSAGHYTAYAKNPRTDVWYYYNDEITSRQKPQDEDFSNAYILFYSRQ 1044

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213501|gb|EFN88910.1| Ubiquitin carboxyl-terminal hydrolase 32 [Harpegnathos saltator]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            CV    GVSAGHYTAY  +P T  W+Y+NDE    Q+PQDEDF+NAYILFY ++
Sbjct: 992  CVCHFGGVSAGHYTAYAKNPRTDVWYYYNDEITSRQKPQDEDFSNAYILFYSRQ 1045

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858846|ref|XP_003704910.1| PREDICTED: uncharacterized protein LOC100877443 [Megachile rotundata]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 40/54 (74%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            CV    GVSAGHYTAY  +P T  W+Y+NDE    Q+PQDEDF+NAYILFY ++
Sbjct: 988  CVCHFGGVSAGHYTAYAKNPRTDVWYYYNDEITSRQKPQDEDFSNAYILFYSRQ 1041

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487479|ref|XP_001600155.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 43-like [Nasonia vitripennis]

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            CV    GVSAGHYTAY  +P T  WHY+ND+    Q+PQ+EDF+NAYILFY ++
Sbjct: 960  CVCHFGGVSAGHYTAYAKNPQTDIWHYYNDDVTSRQKPQEEDFSNAYILFYSRQ 1013

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396230|ref|XP_003484486.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 43-like [Bombus impatiens]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            CV    GVSAGHYTAY  +P T  W+Y+NDE    Q+PQ+EDF+NAYILFY ++
Sbjct: 990  CVCHFGGVSAGHYTAYAKNPRTDMWYYYNDEITSRQKPQEEDFSNAYILFYSRQ 1043

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328715747|ref|XP_001949023.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 4-like [Acyrthosiphon pisum]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 45/62 (72%), Gaps = 3/62 (4%)

Query: 2   CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR---DED 58
           CV  +   S GHYT+YT H ++++WHY+NDET ++  P  ED+ NAYILFYKK+   D+D
Sbjct: 833 CVCHTGSTSMGHYTSYTRHVHSEDWHYYNDETAIKTIPGQEDYCNAYILFYKKQGLPDDD 892

Query: 59  SD 60
           +D
Sbjct: 893 AD 894

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260807898|ref|XP_002598745.1| hypothetical protein BRAFLDRAFT_95861 [Branchiostoma floridae] gi|229284019|gb|EEN54757.1| hypothetical protein BRAFLDRAFT_95861 [Branchiostoma floridae]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 38/54 (70%)

Query: 2    CVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
            C+    GV+AGHYT +T HP +  W Y+NDETV + +P +ED  N Y+LFY+++
Sbjct: 1024 CILHFGGVNAGHYTCFTKHPLSSSWRYYNDETVSQLQPSEEDAKNVYVLFYQRK 1077

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
UNIPROTKB|F1NUS3	447	F1NUS3 "Uncharacterized protei	0.636	0.093	0.452	4.3e-07
SGD|S000003733	1254	UBP12 "Ubiquitin-specific prot	0.803	0.042	0.396	2.8e-06
UNIPROTKB|F1S200	389	LOC100737416 "Uncharacterized	0.742	0.125	0.4	4.3e-06
UNIPROTKB|E9PPM2	362	USP2 "Ubiquitin carboxyl-termi	0.636	0.116	0.476	8.1e-06
CGD|CAL0000531	1372	orf19.6260 [Candida albicans (	0.727	0.034	0.448	8.4e-06
UNIPROTKB|F1NUS4	161	F1NUS4 "Uncharacterized protei	0.636	0.260	0.452	9e-06
UNIPROTKB|I3LJX6	137	LOC100624494 "Uncharacterized	0.727	0.350	0.464	1.1e-05
UNIPROTKB|O75604	605	USP2 "Ubiquitin carboxyl-termi	0.636	0.069	0.476	1.7e-05
MGI|MGI:2152450	520	Usp3 "ubiquitin specific pepti	0.878	0.111	0.4	1.8e-05
UNIPROTKB|P35125	1406	USP6 "Ubiquitin carboxyl-termi	0.742	0.034	0.42	2.3e-05

UNIPROTKB|F1NUS3 F1NUS3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query:    12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
             GHYTAY   P + EWH FND  V          ++AY+LFY+
Sbjct:   398 GHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFYE 439

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

SGD|S000003733 UBP12 "Ubiquitin-specific protease" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 122 (48.0 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query:     8 GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD 60
             G+  GHYTAY  +    +W+YF+D  V E  P++    +AY+LFY +R +D +
Sbjct:  1063 GLGGGHYTAYVKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRHKDGN 1115

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0004843 "ubiquitin-specific protease activity" evidence=TAS

UNIPROTKB|F1S200 LOC100737416 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 114 (45.2 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query:     9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
             +  GHY  Y  +PN+K W+ +ND +  E  P + D ++AYILFY+++  D
Sbjct:   307 LGGGHYVTYAKNPNSK-WYCYNDSSCKELHPDEIDTDSAYILFYEQQGID 355

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|E9PPM2 USP2 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 8.1e-06, P = 8.1e-06
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query:    12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
             GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct:   313 GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 354

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

CGD|CAL0000531 orf19.6260 [Candida albicans (taxid:5476)]

 Score = 118 (46.6 bits), Expect = 8.4e-06, P = 8.4e-06
 Identities = 22/49 (44%), Positives = 31/49 (63%)

Query:     8 GVSAGHYTAYTLHPNTKEWHYFNDETVLE-QRPQDEDFNNAYILFYKKR 55
             G+  GHYTA   +    +W+YFND  V E   PQ+   N+AY+LFY++R
Sbjct:  1114 GLGGGHYTASVKNFRDDKWYYFNDSRVTEINNPQEVVANSAYLLFYRRR 1162

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

UNIPROTKB|F1NUS4 F1NUS4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 19/42 (45%), Positives = 24/42 (57%)

Query:    12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
             GHYTAY   P + EWH FND  V          ++AY+LFY+
Sbjct:   112 GHYTAYCKSPISSEWHSFNDSRVTPMSSSHVRSSDAYLLFYE 153

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|I3LJX6 LOC100624494 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 26/56 (46%), Positives = 29/56 (51%)

Query:     3 VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDF---NNAYILFYKKR 55
             V    GV +GHYTAY  H     W +FND TV      DED      AYILFY +R
Sbjct:    78 VHHGSGVGSGHYTAYATHEG--RWFHFNDSTVTLT---DEDTVVKAKAYILFYVER 128

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|O75604 USP2 "Ubiquitin carboxyl-terminal hydrolase 2" [Homo sapiens (taxid:9606)]

 Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query:    12 GHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
             GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct:   556 GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 597

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0048642 "negative regulation of skeletal muscle tissue development" evidence=IEA

GO:0048643 "positive regulation of skeletal muscle tissue development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0050821 "protein stabilization" evidence=IMP;IDA

GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0004221 "ubiquitin thiolesterase activity" evidence=IMP;IDA

GO:0030332 "cyclin binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

MGI|MGI:2152450 Usp3 "ubiquitin specific peptidase 3" [Mus musculus (taxid:10090)]

 Score = 110 (43.8 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 24/60 (40%), Positives = 30/60 (50%)

Query:     3 VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSDVE 62
             V    GV +GHYTAY +H     W +FND TV     +      AYILFY +R   +  E
Sbjct:   461 VHHGSGVGSGHYTAYAVHEG--RWFHFNDSTVTVTDEETVGKAKAYILFYVERQARAGAE 518

GO:0000278 "mitotic cell cycle" evidence=ISO

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0004221 "ubiquitin thiolesterase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016578 "histone deubiquitination" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031647 "regulation of protein stability" evidence=ISO

GO:0042393 "histone binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P35125 USP6 "Ubiquitin carboxyl-terminal hydrolase 6" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query:     9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
             +S GHY  Y  +PN K W+ +ND +  E  P + D ++AYILFY+++  D
Sbjct:  1324 LSGGHYITYAKNPNCK-WYCYNDSSCEELHPDEIDTDSAYILFYEQQGID 1372

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=NAS

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0060627 "regulation of vesicle-mediated transport" evidence=IDA

GO:0055037 "recycling endosome" evidence=IDA

GO:0005516 "calmodulin binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=TAS

GO:0005764 "lysosome" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	66
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	2e-15
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	8e-11
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	2e-09
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	9e-09
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	1e-05
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	2e-05
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	2e-04
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	2e-04
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	4e-04
COG5207	749	COG5207, UBP14, Isopeptidase T [Posttranslational	0.003

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 66.9 bits (164), Expect = 2e-15
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
            ++ GHYTAY  +  T +W+ F+D  V +        ++AYILFY+
Sbjct: 185 SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 54.4 bits (131), Expect = 8e-11
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 9   VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD-----EDFNNAYILFYK 53
             +GHY AY   P+  +W+ FND+ V E   ++        ++AYILFY+
Sbjct: 206 ADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFN-NAYILFY 52
            +S GHY AY       +W  F+DE V     ++E    +AYILFY
Sbjct: 269 SLSGGHYIAYIKKREKNKWVKFDDEKVSVV-TEEEVLRSSAYILFY 313

Length = 313

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 49.1 bits (117), Expect = 9e-09
 Identities = 19/48 (39%), Positives = 31/48 (64%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
           G+S GHYTAY  +     W+ F+D  + E  P+D   ++AY+LFY+++
Sbjct: 775 GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822

Length = 823

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 23/70 (32%)

Query: 7   KGVSA--GHYTAYTLHPNTKEWHYFNDETVLE-----------QRPQDEDF--------- 44
           +GVSA  GHY A+     T EW+ FNDE V E           + P              
Sbjct: 255 QGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHS 314

Query: 45  -NNAYILFYK 53
              AY+L YK
Sbjct: 315 SRTAYMLVYK 324

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 9/56 (16%)

Query: 7   KGVSA--GHYTAYTLHPNTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYK 53
           +G SA  GHY A+    N  +W  F+D+ V E   +D        D++ AYIL YK
Sbjct: 250 QGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 17/51 (33%)

Query: 10  SAGHYTAYTLHPNTKEWHYFND--------ETVLEQRPQDEDFNNAYILFY 52
            +GHY  Y    N K W+  +D        ETVL Q         AYILFY
Sbjct: 262 HSGHYYCYVKSSNGK-WYNMDDSKVSPVSIETVLSQ--------KAYILFY 303

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 9   VSAGHYTAYTLHP--NTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
           V +GHY A+         +W  FNDE V+  +   E     YI FY+
Sbjct: 265 VHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 35.7 bits (83), Expect = 4e-04
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 24/74 (32%)

Query: 6   SKGVSAGHYTAYTLHPNTK-EWHYFNDETVLEQRPQD---EDF----------------- 44
           S     GHY +Y +      +W+ FND+ V    P D   E F                 
Sbjct: 261 SGDAHGGHYYSY-IKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFK 319

Query: 45  --NNAYILFYKKRD 56
              NAY+LFY+++ 
Sbjct: 320 RTTNAYMLFYERKS 333

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 9   VSAGHYTA--YTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKK 54
           + AGHY         +  +W   NDE  +     +   +N YI  +K+
Sbjct: 701 IHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748

Length = 749

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.82
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.82
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.82
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.82
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.81
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.81
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.81
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.81
KOG1865|consensus	545		99.8
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.79
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.79
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.78
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.78
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.78
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.78
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.77
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.77
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.76
KOG1868|consensus	653		99.74
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.74
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.7
KOG1870|consensus	842		99.7
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.68
KOG1867|consensus	492		99.68
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.62
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.6
KOG4598|consensus	1203		99.53
KOG1866|consensus	944		99.52
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.45
KOG1873|consensus	877		99.44
KOG0944|consensus	763		99.38
KOG1864|consensus	587		99.29
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.27
KOG1872|consensus	473		99.27
KOG1871|consensus	420		98.76
KOG1863|consensus	1093		98.74
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	98.59
KOG1275|consensus	1118		97.63
KOG2026|consensus	442		96.92
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	93.69
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	93.59
PF01473	19	CW_binding_1: Putative cell wall binding repeat; I	89.57

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.82  E-value=9.5e-21  Score=122.70  Aligned_cols=53  Identities=32%  Similarity=0.541  Sum_probs=49.3

Q ss_pred             CEEEeeecCCCCeEEEEEECCC---------------------CCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPN---------------------TKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~---------------------~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.|+.++|||+||+|...                     +++|++|||+.|++++.+++.+.+||||||+
T Consensus       206 ~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe  279 (279)
T cd02667         206 GVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE  279 (279)
T ss_pred             EEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence            7999999779999999999854                     6899999999999999999999999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.82  E-value=1.1e-20  Score=121.70  Aligned_cols=53  Identities=25%  Similarity=0.479  Sum_probs=48.5

Q ss_pred             CEEEeee-cCCCCeEEEEEECCC-CCcEEEEcCceEEEcCCCcCC---CCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPN-TKEWHYFNDETVLEQRPQDED---FNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~-~~~W~~fdD~~V~~~~~~~~~---~~~aYiLfY~   53 (66)
                      |||+|.| ++++|||+||+|... +++||+|||+.|++++.+++.   +++||||||+
T Consensus       188 ~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~  245 (245)
T cd02673         188 AVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD  245 (245)
T ss_pred             EEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence            6999999 689999999999875 689999999999999999876   6899999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.82  E-value=6.7e-21  Score=125.83  Aligned_cols=53  Identities=32%  Similarity=0.551  Sum_probs=47.4

Q ss_pred             CEEEeee-cCCCCeEEEEEECCC--------------------CCcEEEEcCceEEEcCCCcCCC-------CCeEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPN--------------------TKEWHYFNDETVLEQRPQDEDF-------NNAYILFY   52 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~--------------------~~~W~~fdD~~V~~~~~~~~~~-------~~aYiLfY   52 (66)
                      |||+|.| ++++|||+||+|...                    .++|++|||+.|++++.+++.+       .+||||||
T Consensus       247 ~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY  326 (327)
T cd02664         247 AVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFY  326 (327)
T ss_pred             EEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEe
Confidence            7999999 689999999999863                    3789999999999999887754       89999999


Q ss_pred             E
Q psy7177          53 K   53 (66)
Q Consensus        53 ~   53 (66)
                      +
T Consensus       327 ~  327 (327)
T cd02664         327 E  327 (327)
T ss_pred             C
Confidence            5

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.82  E-value=1.5e-20  Score=119.95  Aligned_cols=53  Identities=32%  Similarity=0.590  Sum_probs=49.0

Q ss_pred             CEEEeeecCCCCeEEEEEECC--------------------CCCcEEEEcCceEEEcCCCcC-CCCCeEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHP--------------------NTKEWHYFNDETVLEQRPQDE-DFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~--------------------~~~~W~~fdD~~V~~~~~~~~-~~~~aYiLfY~   53 (66)
                      |||+|.|+.++|||++|+|.+                    ..++||+|||+.|++++.+++ .+.+||||||+
T Consensus       167 avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe  240 (240)
T cd02662         167 AVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE  240 (240)
T ss_pred             EEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence            799999987999999999986                    348999999999999999998 89999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.81  E-value=2.6e-20  Score=122.08  Aligned_cols=56  Identities=32%  Similarity=0.634  Sum_probs=50.0

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC----------------------CCCeEEEEEEEcC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED----------------------FNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~----------------------~~~aYiLfY~r~~   56 (66)
                      |||+|.|+.++|||++++|...+++|+.|||+.|++++.+++.                      +.+||||||+|++
T Consensus       256 ~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~  333 (334)
T cd02659         256 GVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKS  333 (334)
T ss_pred             EEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeC
Confidence            7999999999999999999976799999999999999877652                      4679999999976

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.81  E-value=5.9e-20  Score=119.71  Aligned_cols=53  Identities=30%  Similarity=0.521  Sum_probs=49.0

Q ss_pred             CEEEeee-cCCCCeEEEEEECC--CCCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHP--NTKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~--~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.| ++++|||++++|..  .+++|++|||+.|++++..++..++||||||+
T Consensus       256 ~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~  311 (311)
T cd02658         256 AFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ  311 (311)
T ss_pred             EEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence            7999999 69999999999986  34899999999999999999999999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.81  E-value=2.8e-20  Score=121.42  Aligned_cols=51  Identities=31%  Similarity=0.535  Sum_probs=46.6

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC--------CCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED--------FNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~--------~~~aYiLfY~   53 (66)
                      |||+|.| ++++|||++|+|.  +++|++|||+.|++++.+++.        +.+||||||+
T Consensus       241 ~vi~H~G~~~~~GHY~a~~k~--~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~  300 (300)
T cd02663         241 AVVVHIGGGPNHGHYVSIVKS--HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ  300 (300)
T ss_pred             EEEEEecCCCCCCceEEEEEC--CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence            7999999 5999999999999  789999999999999887764        6899999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.81  E-value=2.7e-20  Score=120.92  Aligned_cols=53  Identities=32%  Similarity=0.543  Sum_probs=48.0

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCC-------CCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDF-------NNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~-------~~aYiLfY~   53 (66)
                      |||+|.| ++++|||++|+|....++|++|||+.|++++.+++..       .+||||||+
T Consensus       245 ~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~  305 (305)
T cd02657         245 AVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK  305 (305)
T ss_pred             EEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence            7999999 6999999999999755899999999999999888753       699999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=99.80  E-value=1.1e-19  Score=126.59  Aligned_cols=54  Identities=24%  Similarity=0.457  Sum_probs=52.1

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEc
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~   55 (66)
                      |||+|.| +..+|||++|||.. +|+||+|||+.|+.++.+.+.++.||||||.|.
T Consensus       356 avlVH~g~~~~~GHY~cYvks~-~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~  410 (545)
T KOG1865|consen  356 AVLVHLGTSCHSGHYFCYVKSQ-NGQWYKMDDSEVTQSSIESVLSQQAYILFYARK  410 (545)
T ss_pred             EEEEeccccccCCceEEEEEcC-CCceEEccCceeeeccccceecccceEEEEEee
Confidence            7999999 99999999999997 789999999999999999999999999999997

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.79  E-value=7.3e-20  Score=117.28  Aligned_cols=53  Identities=30%  Similarity=0.506  Sum_probs=47.9

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC--------CCCeEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED--------FNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~--------~~~aYiLfY~   53 (66)
                      |||+|.|++++|||++|+|+..+++|++|||+.|++++.+++.        ..+||||||.
T Consensus       168 aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv  228 (228)
T cd02665         168 AVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI  228 (228)
T ss_pred             EEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence            7999999999999999999877899999999999999887764        4589999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.79  E-value=1.6e-19  Score=112.56  Aligned_cols=52  Identities=29%  Similarity=0.522  Sum_probs=48.5

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCC---CCeEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDF---NNAYILFY   52 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~---~~aYiLfY   52 (66)
                      |||+|.|+.++|||+|++|+..+++|++|||+.|++++.+++..   .+||||||
T Consensus       215 avi~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y  269 (269)
T PF00443_consen  215 AVIVHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY  269 (269)
T ss_dssp             EEEEEESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred             hhhccccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence            69999999999999999999766779999999999999988877   99999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.78  E-value=1.7e-19  Score=118.71  Aligned_cols=53  Identities=34%  Similarity=0.464  Sum_probs=46.5

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCc---------------------CCCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD---------------------EDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~---------------------~~~~~aYiLfY~   53 (66)
                      |||+|.| ++++|||++++|+..+++|++|||+.|++++...                     +.+..||||||+
T Consensus       250 ~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~  324 (324)
T cd02668         250 GVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK  324 (324)
T ss_pred             EEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence            6999999 6899999999999767899999999999986553                     246899999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.78  E-value=2.5e-19  Score=115.61  Aligned_cols=53  Identities=23%  Similarity=0.523  Sum_probs=45.5

Q ss_pred             CEEEeee-cCCCCeEEEEEECCC-----------CCcEEEEcCceEEEcCCC------cCCCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPN-----------TKEWHYFNDETVLEQRPQ------DEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~-----------~~~W~~fdD~~V~~~~~~------~~~~~~aYiLfY~   53 (66)
                      |||+|.| ++++|||+||||...           +++|++|||..|+.+...      .+.+++||||||+
T Consensus       171 aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq  241 (241)
T cd02670         171 SAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ  241 (241)
T ss_pred             EEEEeCCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence            6999999 699999999999975           379999999988776433      4578999999996

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=2.7e-19  Score=126.91  Aligned_cols=56  Identities=34%  Similarity=0.678  Sum_probs=52.8

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~   56 (66)
                      ||=+|.|.+.+||||||+|+..+++||+|||++|+++++++..++.||+|||+|+.
T Consensus       768 avDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~  823 (823)
T COG5560         768 AVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS  823 (823)
T ss_pred             eccccccccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence            46689999999999999999999999999999999999999999999999999974

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.78  E-value=3e-19  Score=122.30  Aligned_cols=53  Identities=21%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             CEEEeeecC-CCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSKGV-SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~-~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.|++ ++|||++++|+..+++||+|||+.|++++.+.+..++||||||+
T Consensus       387 avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~  440 (440)
T cd02669         387 ANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE  440 (440)
T ss_pred             EEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence            799999977 99999999998768999999999999999999999999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.77  E-value=5.5e-19  Score=110.47  Aligned_cols=53  Identities=34%  Similarity=0.593  Sum_probs=49.6

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.|..++|||++++|...+++|+.|||+.|++++.+++...+||||||+
T Consensus       178 ~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~  230 (230)
T cd02674         178 AVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE  230 (230)
T ss_pred             EEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence            69999997799999999999766899999999999999999989999999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.77  E-value=5.7e-19  Score=115.51  Aligned_cols=52  Identities=29%  Similarity=0.549  Sum_probs=48.9

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.|+..+|||++++|.. +++|++|||+.|++++.+++...+||||||.
T Consensus       277 avi~H~G~~~~GHY~~~~~~~-~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~  328 (328)
T cd02660         277 AVVVHKGTLDTGHYTAYCRQG-DGQWFKFDDAMITRVSEEEVLKSQAYLLFYH  328 (328)
T ss_pred             EEEEeeccCCCCcEEEEEECC-CCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence            799999988999999999996 4899999999999999999999999999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.76  E-value=8.9e-19  Score=112.75  Aligned_cols=52  Identities=27%  Similarity=0.420  Sum_probs=48.3

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.| .+++|||++++|.. +++|++|||+.|++++.+++...+||||||.
T Consensus       252 ~vi~H~G~~~~~GHY~~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~  304 (304)
T cd02661         252 AVLVHSGFSPHSGHYYCYVKSS-NGKWYNMDDSKVSPVSIETVLSQKAYILFYI  304 (304)
T ss_pred             EEEEECCCCCCCcCCEEEEECC-CCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence            6999999 55999999999985 6899999999999999999999999999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1868|consensus

Probab=99.74  E-value=2.9e-18  Score=122.19  Aligned_cols=60  Identities=32%  Similarity=0.546  Sum_probs=55.1

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD   60 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~~   60 (66)
                      ||++|.|++.+|||||+|+....+.|+.|||+.|+.+....+.++.||||||+|....+.
T Consensus       592 aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~~~~  651 (653)
T KOG1868|consen  592 AVVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGIFEE  651 (653)
T ss_pred             EEEeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCcccc
Confidence            699999999999999999887778999999999999999888899999999999876553

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.74  E-value=3e-18  Score=105.10  Aligned_cols=53  Identities=38%  Similarity=0.653  Sum_probs=48.5

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcC-----CCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDE-----DFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~-----~~~~aYiLfY~   53 (66)
                      |||+|.| ++.+|||++++|...+++|++|||..|++++.+++     ...+||+|||+
T Consensus       197 ~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~  255 (255)
T cd02257         197 AVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE  255 (255)
T ss_pred             EEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence            6999999 55999999999997668999999999999999987     67999999995

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.70  E-value=1.2e-17  Score=111.31  Aligned_cols=47  Identities=40%  Similarity=0.693  Sum_probs=41.4

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcC---------CCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDE---------DFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~---------~~~~aYiLfY~   53 (66)
                      |||+|.| ++++|||+||+|      |++|||+.|++++++++         ...+||||||+
T Consensus       276 ~VI~H~G~~~~~GHY~a~vr------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~  332 (332)
T cd02671         276 AVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK  332 (332)
T ss_pred             EEEEEcCCCCCCCeEEEEEE------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence            6999999 689999999999      99999999999876543         35799999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1870|consensus

Probab=99.70  E-value=6.9e-18  Score=122.89  Aligned_cols=56  Identities=34%  Similarity=0.604  Sum_probs=53.7

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~   56 (66)
                      ||.+|+|.+.+|||+||+|+..+++|+.|||+.|++++++++.++.||+|||+|++
T Consensus       787 av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~  842 (842)
T KOG1870|consen  787 AVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD  842 (842)
T ss_pred             eeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence            78999999999999999999889999999999999999999999999999999974

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.68  E-value=5.7e-17  Score=105.61  Aligned_cols=47  Identities=28%  Similarity=0.404  Sum_probs=42.4

Q ss_pred             CEEEeee-cCCCCeEEEEEECCC----CCcEEEEcCceEEEcCCCcCCCCCeEEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPN----TKEWHYFNDETVLEQRPQDEDFNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~----~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~   53 (66)
                      |||+|.| +.++|||+|++|...    .++||.|||..|++++.      .||||||+
T Consensus       217 gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY~  268 (268)
T cd02672         217 GYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLYQ  268 (268)
T ss_pred             EEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence            7999999 459999999999864    57899999999999887      99999995

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1867|consensus

Probab=99.68  E-value=1.8e-17  Score=115.43  Aligned_cols=56  Identities=29%  Similarity=0.512  Sum_probs=52.2

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED   58 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~   58 (66)
                      |||+|.|..++|||+||+|.  .+.|++|||+.|+.++.+++.+..||+|||.++...
T Consensus       432 AVV~H~G~~~SGHY~aY~r~--~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~  487 (492)
T KOG1867|consen  432 AVVVHHGTVGSGHYVAYRRQ--SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVE  487 (492)
T ss_pred             EEEEeccCCCCCceEEEEEe--CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhh
Confidence            79999999999999999999  578999999999999999999999999999886543

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.62  E-value=4.6e-16  Score=104.38  Aligned_cols=53  Identities=26%  Similarity=0.378  Sum_probs=47.5

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC------CCCeEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED------FNNAYILFYK   53 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~------~~~aYiLfY~   53 (66)
                      ||++|.|+.++|||++++|+..++.|++|||+.|++++..++.      +.+||||+|.
T Consensus       285 avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv  343 (343)
T cd02666         285 AVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV  343 (343)
T ss_pred             EEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence            6999999889999999999987789999999999999886643      4799999994

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=2e-15  Score=100.98  Aligned_cols=53  Identities=23%  Similarity=0.470  Sum_probs=47.4

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCc-CCCCCeEEEEEEEc
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD-EDFNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~-~~~~~aYiLfY~r~   55 (66)
                      ||+||.|+.++|||+++++.  ++.|+.|||+.|++++... ....++|||||+|.
T Consensus       361 gv~Ch~G~L~gGHY~s~v~~--~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~  414 (415)
T COG5533         361 GVVCHNGTLNGGHYFSEVKR--SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRS  414 (415)
T ss_pred             EEEeecceecCceeEEeeee--cCceEEechhheeeccceecccCCcceEEEEEec
Confidence            69999999999999999998  6899999999999987653 45679999999985

>KOG4598|consensus

Probab=99.53  E-value=2.6e-15  Score=108.22  Aligned_cols=59  Identities=31%  Similarity=0.524  Sum_probs=52.7

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC-------------CCCeEEEEEEEcCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED-------------FNNAYILFYKKRDEDS   59 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~-------------~~~aYiLfY~r~~~~~   59 (66)
                      +|.+|+|++.+|||+||+++.+++.||.|||.+|+.++..++.             +.+||||+|+|.+..-
T Consensus       374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~kr  445 (1203)
T KOG4598|consen  374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPKR  445 (1203)
T ss_pred             hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCccc
Confidence            5789999999999999999999999999999999999887743             4789999999987654

>KOG1866|consensus

Probab=99.52  E-value=6.9e-16  Score=111.03  Aligned_cols=59  Identities=32%  Similarity=0.544  Sum_probs=50.7

Q ss_pred             CEEEeeecCCCCeEEEEEECC---CCCcEEEEcCceEEEcCCCcC--------------------CCCCeEEEEEEEcCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHP---NTKEWHYFNDETVLEQRPQDE--------------------DFNNAYILFYKKRDE   57 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~---~~~~W~~fdD~~V~~~~~~~~--------------------~~~~aYiLfY~r~~~   57 (66)
                      ||++|+|.+.+|||++|++..   .+++||+|||..|++.+.+++                    .-.+||||||+|++.
T Consensus       357 GVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d  436 (944)
T KOG1866|consen  357 GVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDD  436 (944)
T ss_pred             EEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcC
Confidence            699999999999999999975   357899999999999987762                    237999999999976


Q ss_pred             CC
Q psy7177          58 DS   59 (66)
Q Consensus        58 ~~   59 (66)
                      .+
T Consensus       437 ~p  438 (944)
T KOG1866|consen  437 IP  438 (944)
T ss_pred             CC
Confidence            65

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=1.6e-14  Score=104.58  Aligned_cols=61  Identities=23%  Similarity=0.335  Sum_probs=52.3

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---------------C-------CCeEEEEEEEcCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---------------F-------NNAYILFYKKRDED   58 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---------------~-------~~aYiLfY~r~~~~   58 (66)
                      ||++|.|..+.|||+|++|...+++||+|||++|+..+..++.               +       -+||||+|-|++..
T Consensus       435 gVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~~  514 (1089)
T COG5077         435 GVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSML  514 (1089)
T ss_pred             EEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhHH
Confidence            6999999999999999999888999999999999998766521               1       46899999999877


Q ss_pred             CCc
Q psy7177          59 SDV   61 (66)
Q Consensus        59 ~~~   61 (66)
                      ++.
T Consensus       515 ddL  517 (1089)
T COG5077         515 DDL  517 (1089)
T ss_pred             Hhh
Confidence            643

>KOG1873|consensus

Probab=99.44  E-value=1.3e-14  Score=104.52  Aligned_cols=55  Identities=33%  Similarity=0.500  Sum_probs=50.3

Q ss_pred             CEEEeeecCCCCeEEEEEECC--------------------CCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEc
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHP--------------------NTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~--------------------~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~   55 (66)
                      |||.|.|.+..|||++|+|..                    ..++||+.-|+.|++++++++...+||||||+|.
T Consensus       803 gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI  877 (877)
T KOG1873|consen  803 GVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI  877 (877)
T ss_pred             cceeccccccCCcchhhhhccchhhccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence            689999999999999999953                    2468999999999999999999999999999984

>KOG0944|consensus

Probab=99.38  E-value=4.9e-13  Score=95.59  Aligned_cols=51  Identities=24%  Similarity=0.461  Sum_probs=45.2

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEc
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~   55 (66)
                      |+|.|.| ++.+|||+|++|..  |+|+.|||++|-  ..++.-...+||.||+|.
T Consensus       711 a~IsHmGts~~sGHYV~hirKe--gkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~  762 (763)
T KOG0944|consen  711 AFISHMGTSAHSGHYVCHIRKE--GKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI  762 (763)
T ss_pred             EEEecCCCCCCCcceEEEEeec--CcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence            6899999 99999999999994  789999999987  455556789999999985

>KOG1864|consensus

Probab=99.29  E-value=3e-12  Score=90.95  Aligned_cols=54  Identities=24%  Similarity=0.349  Sum_probs=45.2

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---CCCeEEEEEEEc
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---FNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---~~~aYiLfY~r~   55 (66)
                      |||+|.| +++.|||+|++|... ..|+.|||+.|++++.+.+.   ..+.|++||...
T Consensus       515 avVvH~G~~p~~GHYia~~r~~~-~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~  572 (587)
T KOG1864|consen  515 AVVVHLGSTPNRGHYVAYVKSLD-FNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQ  572 (587)
T ss_pred             EEEEeccCCCCCcceEEEEeeCC-CCceecccccccccCcchhhhccCCCccceeeeEE
Confidence            7999999 999999999999853 33999999999999888765   467777777654

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=4.1e-12  Score=89.49  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=48.9

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCC--cEEEEcCceEEEcCCCcCCCCCeEEEEEEEc
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTK--EWHYFNDETVLEQRPQDEDFNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~--~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~   55 (66)
                      |||+|.| ++.+|||++|+|+...+  +|+.|||+++-..+.-+....+.||.||+|.
T Consensus       692 AvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~  749 (749)
T COG5207         692 AVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC  749 (749)
T ss_pred             eEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence            7999999 99999999999986443  6899999999888888888899999999883

>KOG1872|consensus

Probab=99.27  E-value=2.7e-12  Score=88.80  Aligned_cols=55  Identities=25%  Similarity=0.450  Sum_probs=49.2

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCC-------CCeEEEEEEEcC
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDF-------NNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~-------~~aYiLfY~r~~   56 (66)
                      |||.|.| +..+|||.+++|.+ .++|++|||..|+.+..+.+.+       .+||||.|+-+.
T Consensus       408 ~vithkgrss~sghy~aw~r~s-~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~  470 (473)
T KOG1872|consen  408 LVITHKGRSSKSGHYVAWNRVS-EDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARV  470 (473)
T ss_pred             EeeeccccccCCCcceEEEecc-CCceeeccccccccccccceeeecCCCccchhhheeecccc
Confidence            6899999 99999999999997 5699999999999998888653       789999998654

>KOG1871|consensus

Probab=98.76  E-value=1.6e-08  Score=69.32  Aligned_cols=56  Identities=21%  Similarity=0.430  Sum_probs=49.9

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC----CCCeEEEEEEEcC
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED----FNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~----~~~aYiLfY~r~~   56 (66)
                      ||+.|.| ++..|||+..+.+..-+.|+.+||..|..+..+++.    +.+||+|.|++.+
T Consensus       360 ~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d  420 (420)
T KOG1871|consen  360 AVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD  420 (420)
T ss_pred             EEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence            5889999 999999999999988889999999999999888765    4789999998853

>KOG1863|consensus

Probab=98.74  E-value=4.7e-09  Score=78.87  Aligned_cols=61  Identities=26%  Similarity=0.435  Sum_probs=50.7

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC----------C------CCeEEEEEEEcCCCCCc
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED----------F------NNAYILFYKKRDEDSDV   61 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~----------~------~~aYiLfY~r~~~~~~~   61 (66)
                      ||.+|.|..++|||+++++.+..++|++|||..|+.++..++.          .      ..||+|+|.|.+..+..
T Consensus       415 ~v~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~~~~  491 (1093)
T KOG1863|consen  415 AVLVHSGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCESKI  491 (1093)
T ss_pred             hhhcccccccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcHHhh
Confidence            5889988999999999999888899999999999999765421          1      23899999999876544

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=98.59  E-value=7.3e-08  Score=62.96  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=29.5

Q ss_pred             CEEEeee-cCCCCeEEEEEECCC--CCcEEEEcCceE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPN--TKEWHYFNDETV   34 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~--~~~W~~fdD~~V   34 (66)
                      |+|+|.| +.+.|||+|++|...  +.+||.|||-.|
T Consensus       259 ~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV  295 (295)
T PF13423_consen  259 SMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV  295 (295)
T ss_pred             EEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence            6899999 799999999999863  369999999654

>KOG1275|consensus

Probab=97.63  E-value=0.00022  Score=53.71  Aligned_cols=52  Identities=19%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             CEEEeee-cCCCCeEEEEEECC--------CCCcEEEEcCceEEEcCCCcCC-----CCCeEEEEE
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHP--------NTKEWHYFNDETVLEQRPQDED-----FNNAYILFY   52 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~--------~~~~W~~fdD~~V~~~~~~~~~-----~~~aYiLfY   52 (66)
                      |+|+|.+ +-+.+|.+++|+..        .+.+||.|||-.|.++++++..     -+.+-||+|
T Consensus       795 a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y  860 (1118)
T KOG1275|consen  795 AMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY  860 (1118)
T ss_pred             eEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence            6899999 77899999999953        2358999999999999998855     378999999

>KOG2026|consensus

Probab=96.92  E-value=4.8e-05  Score=52.60  Aligned_cols=47  Identities=19%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             CCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEc
Q psy7177           9 VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR   55 (66)
Q Consensus         9 ~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~   55 (66)
                      ...|||...+++.+.++||..+|-.|++...+.+.-..+||-+|++.
T Consensus       395 ~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~  441 (442)
T KOG2026|consen  395 DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ  441 (442)
T ss_pred             cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence            56799999999999999999999999999998888888888888764

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.69  E-value=0.2  Score=31.88  Aligned_cols=47  Identities=15%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             eee-c-CCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCC
Q psy7177           5 PSK-G-VSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED   58 (66)
Q Consensus         5 H~G-~-~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~   58 (66)
                      |.| . -..||-+.+++.  .+.||.+||+.+.+-+++-.     =+|.|..-+.+
T Consensus       130 ~agi~~~g~~Havfa~~t--s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D~E  178 (193)
T PF05408_consen  130 HAGIFLKGQEHAVFACVT--SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYDQE  178 (193)
T ss_dssp             EEEEEEESTTEEEEEEEE--TTCEEEEETTEEEE----GG-----GEEEEEESSSS
T ss_pred             hhHheecCCcceEEEEEe--eCcEEEecCCeeeeCCCChh-----heEEEcccCcc
Confidence            566 3 447999988887  57899999999998766432     24666655433

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=93.59  E-value=0.081  Score=35.22  Aligned_cols=22  Identities=14%  Similarity=0.382  Sum_probs=19.5

Q ss_pred             CCeEEEEEECCCCCcEEEEcCce
Q psy7177          11 AGHYTAYTLHPNTKEWHYFNDET   33 (66)
Q Consensus        11 ~GHY~a~~~~~~~~~W~~fdD~~   33 (66)
                      --|+++++++. +|.|.++||-+
T Consensus       231 ~~HFvtWi~~~-dGsWLecDDLk  252 (275)
T PF15499_consen  231 LNHFVTWIRDS-DGSWLECDDLK  252 (275)
T ss_pred             CceeEEEEEcC-CCCeEeeccCC
Confidence            46999999997 78899999976

>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2

Probab=89.57  E-value=0.35  Score=19.32  Aligned_cols=14  Identities=21%  Similarity=0.843  Sum_probs=10.3

Q ss_pred             EEECCCCCcEEEEcCc
Q psy7177          17 YTLHPNTKEWHYFNDE   32 (66)
Q Consensus        17 ~~~~~~~~~W~~fdD~   32 (66)
                      +++.  ++.||.|+++
T Consensus         3 W~~~--~~~wYy~~~~   16 (19)
T PF01473_consen    3 WVQD--NGNWYYFDSD   16 (19)
T ss_dssp             EEEE--TTEEEEETTT
T ss_pred             CEEE--CCEEEEeCCC
Confidence            4555  6899999874

4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	66
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		4e-06
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		4e-06
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		5e-06
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		5e-06
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		2e-04

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 11  AGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
            GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 324 GGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 366

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 6   SKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
           S     GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 312 SGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 359

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 6   SKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
           S     GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 293 SGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 340

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 6   SKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
           S     GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 293 SGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 340

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
            +  GHYTAY  +    +W+YF+D  V            AY+LFY++RD++
Sbjct: 311 AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	8e-13
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	1e-12
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	2e-11
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	5e-11
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	2e-10
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	5e-10
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	2e-09
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	6e-08
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	1e-07
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	9e-07

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 59.8 bits (145), Expect = 8e-13
 Identities = 21/52 (40%), Positives = 26/52 (50%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS 59
               GHYTAY   P T EWH FND +V          ++AY+LFY+     S
Sbjct: 295 TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPS 346

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 3   VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDED 58
                 +  GHYTAY  +    +W+YF+D  V            AY+LFY++RD++
Sbjct: 306 SNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 56.1 bits (135), Expect = 2e-11
 Identities = 17/53 (32%), Positives = 23/53 (43%)

Query: 3   VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR 55
                G+  GHYTAY  +   + W  F+D  V +        + AYILFY   
Sbjct: 343 SNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 395

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 54.7 bits (131), Expect = 5e-11
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 6   SKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDE 57
           S  V  GHYTA         WH +ND  V          +  Y+LFY+   E
Sbjct: 303 SGSVHYGHYTALCRCQT--GWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 53.1 bits (127), Expect = 2e-10
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYKKRDEDSD 60
             S+GHY ++      + W  F+D+ V    P+D        D++ AY+L Y  R  +  
Sbjct: 340 SSSSGHYVSWVKRKQDE-WIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIM 398

Query: 61  VEVS 64
            E S
Sbjct: 399 EEES 402

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 51.9 bits (124), Expect = 5e-10
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDF---NNAYILFYKKRDED 58
            V+ GHY A+      + W  FND  V       ++      AY+LFY  R  +
Sbjct: 427 TVNEGHYIAFCKISGGQ-WFKFNDSMV---SSISQEEVLKEQAYLLFYTIRQVN 476

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 50.3 bits (119), Expect = 2e-09
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 7   KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKK 54
                GHY  +        W  +ND+ V     +    +  YI FY++
Sbjct: 808 TSTMCGHYVCHIKKEG--RWVIYNDQKVCAS--EKPPKDLGYIYFYQR 851

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 46.0 bits (109), Expect = 6e-08
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD---EDF------------NNAYILFY 52
               GHY  Y       +W  F+D+ V     ++    ++             NAY+L Y
Sbjct: 252 DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY 311

Query: 53  KKRDEDSDV 61
            +  + S+V
Sbjct: 312 IRESKLSEV 320

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 15/69 (21%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD---EDF------------NNAYILFY 52
               GHY  Y       +W  F+D+ V     ++    ++             NAY+L Y
Sbjct: 421 DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY 480

Query: 53  KKRDEDSDV 61
            +  + S+V
Sbjct: 481 IRESKLSEV 489

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 43.0 bits (100), Expect = 9e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 6   SKGVSAGHYTAYT-LHPNTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYKKRD 56
                +GHY A+     +  +W+ FND+ V     +         + ++A IL YK   
Sbjct: 356 GANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 414

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.89
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.89
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.85
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.85
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.84
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.83
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.83
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.83
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.81
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.73
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	98.14
3mp2_A	211	Non-structural protein 3; papain-like protease, TG	85.95
1qmy_A	167	Protease, leader protease; hydrolase, sulfhydryl p	82.65

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.89  E-value=2.3e-23  Score=134.55  Aligned_cols=60  Identities=37%  Similarity=0.597  Sum_probs=53.8

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD   60 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~~   60 (66)
                      |||+|.|++.+|||+||+|...+++|++|||+.|++++.+++.+.+||||||+|++..++
T Consensus       288 avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~~~~  347 (348)
T 3nhe_A          288 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASPPSR  347 (348)
T ss_dssp             EEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC----
T ss_pred             EEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCCCCC
Confidence            699999999999999999997788999999999999999999999999999999986553

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.89  E-value=3.4e-23  Score=135.94  Aligned_cols=60  Identities=30%  Similarity=0.550  Sum_probs=54.3

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDSD   60 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~~   60 (66)
                      |||+|.|++++|||+||+|+..+++|++|||+.|++++.+++.+.+||||||+|++.+.+
T Consensus       304 avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~~~  363 (367)
T 2y6e_A          304 AVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDEFY  363 (367)
T ss_dssp             EEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC---
T ss_pred             EEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCCCC
Confidence            799999999999999999997778999999999999999999999999999999976543

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.85  E-value=4.9e-22  Score=132.47  Aligned_cols=56  Identities=30%  Similarity=0.543  Sum_probs=52.5

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~   56 (66)
                      |||+|.|++++|||+||+|+..+++||+|||+.|++++.+++.+.+||||||+|++
T Consensus       341 avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~  396 (396)
T 2gfo_A          341 SVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG  396 (396)
T ss_dssp             EEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred             EEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence            79999999999999999999767899999999999999999999999999999874

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.85  E-value=2.1e-22  Score=130.29  Aligned_cols=57  Identities=30%  Similarity=0.480  Sum_probs=50.5

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS   59 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~   59 (66)
                      |||+|.|++++|||+||+|.  .++|++|||+.|++++.+++.+.+||||||+|++..+
T Consensus       298 avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~~~  354 (355)
T 3i3t_A          298 ALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQEPP  354 (355)
T ss_dssp             EEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC----
T ss_pred             EEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccCCC
Confidence            69999999999999999998  4679999999999999999999999999999987543

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.84  E-value=9.7e-22  Score=130.84  Aligned_cols=56  Identities=25%  Similarity=0.395  Sum_probs=50.6

Q ss_pred             CEEEeee-cCCCCeEEEEEEC-CCCCcEEEEcCceEEEcCCCcCCCCC-------eEEEEEEEcC
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLH-PNTKEWHYFNDETVLEQRPQDEDFNN-------AYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~-~~~~~W~~fdD~~V~~~~~~~~~~~~-------aYiLfY~r~~   56 (66)
                      |||+|.| ++++|||+||+|+ ..+++||+|||+.|++++.+++....       ||||||+|++
T Consensus       350 aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~  414 (415)
T 1vjv_A          350 GVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG  414 (415)
T ss_dssp             EEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred             EEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence            7999999 8999999999998 56889999999999999998876544       9999999985

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.83  E-value=1.5e-21  Score=128.38  Aligned_cols=59  Identities=25%  Similarity=0.428  Sum_probs=52.0

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---------------CCCeEEEEEEEcCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---------------FNNAYILFYKKRDEDS   59 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---------------~~~aYiLfY~r~~~~~   59 (66)
                      |||+|.|++++|||+||+|+..+++||+|||+.|++++.+++.               ..+||||||+|++..+
T Consensus       245 avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~~~  318 (353)
T 1nb8_A          245 AVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLS  318 (353)
T ss_dssp             EEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTTHH
T ss_pred             EEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECchhh
Confidence            7999999999999999999866899999999999999877653               3689999999987643

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.83  E-value=3.9e-21  Score=129.85  Aligned_cols=55  Identities=31%  Similarity=0.489  Sum_probs=52.1

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~   56 (66)
                      |||+|.|++++|||++|+|.. +++||+|||+.|++++++++...+||||||+|++
T Consensus       420 avv~H~G~~~~GHY~a~vr~~-~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~  474 (476)
T 3mhs_A          420 GIVSHKGTVNEGHYIAFCKIS-GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ  474 (476)
T ss_dssp             EEEEEEECSSSEEEEEEEECT-TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCceEEEEECC-CCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence            699999999999999999985 7899999999999999999999999999999986

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.83  E-value=1.3e-21  Score=129.27  Aligned_cols=58  Identities=28%  Similarity=0.481  Sum_probs=49.2

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCC-------eEEEEEEEcCCCC
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNN-------AYILFYKKRDEDS   59 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~-------aYiLfY~r~~~~~   59 (66)
                      |||+|.| ++++|||+||+|+. +++||+|||+.|++++.+++....       ||||||+|++...
T Consensus       332 avv~H~G~s~~~GHY~a~v~~~-~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~~  397 (404)
T 2ayn_A          332 AVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEI  397 (404)
T ss_dssp             EEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC----
T ss_pred             EEEEecCCCCCCCCeEEEEECC-CCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCCC
Confidence            6999999 79999999999984 789999999999999988876544       9999999987654

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.81  E-value=1.6e-20  Score=128.62  Aligned_cols=59  Identities=25%  Similarity=0.428  Sum_probs=51.9

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---------------CCCeEEEEEEEcCCCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---------------FNNAYILFYKKRDEDS   59 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---------------~~~aYiLfY~r~~~~~   59 (66)
                      |||+|.|++++|||+||+|+..+++||+|||+.|++++.+++.               ..+||||||+|++..+
T Consensus       414 avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~~~  487 (522)
T 2f1z_A          414 AVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESKLS  487 (522)
T ss_dssp             EEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTSHH
T ss_pred             EEEEecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCchH
Confidence            7999999989999999999866889999999999999877654               3679999999987643

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.73  E-value=4e-18  Score=123.03  Aligned_cols=52  Identities=21%  Similarity=0.437  Sum_probs=47.1

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~   56 (66)
                      |||+|.| ++++|||+||+|.  +++|++|||+.|+++  ++.....||||||+|.+
T Consensus       801 avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~  853 (854)
T 3ihp_A          801 AFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA  853 (854)
T ss_dssp             EEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred             EEEEeecCCCCCcCeEEEEEe--CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence            6999999 8889999999998  589999999999997  44577899999999976

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=98.14  E-value=1.2e-06  Score=59.02  Aligned_cols=28  Identities=18%  Similarity=0.548  Sum_probs=22.8

Q ss_pred             CEEEeeecCCCCeEEEEEECC-CCCcEEEEcCc
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHP-NTKEWHYFNDE   32 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~-~~~~W~~fdD~   32 (66)
                      |||+    +++|||+||||.. .+++|+.||-.
T Consensus       281 aVlt----adsgHYvafVK~~~~d~~W~~FDsm  309 (374)
T 2vhf_A          281 AVLC----IETSHYVAFVKYGKDDSAWLFFDSM  309 (374)
T ss_dssp             EEEE----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred             EEEE----ccCCceEEEEEecCCCCCeEEEech
Confidence            4666    8999999999973 37899999863

>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}

Probab=85.95  E-value=1.1  Score=27.99  Aligned_cols=32  Identities=9%  Similarity=0.112  Sum_probs=25.8

Q ss_pred             EEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcC
Q psy7177           3 VRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQR   38 (66)
Q Consensus         3 v~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~   38 (66)
                      ++-.|+.++|||+.+....  +  +.+|-..+.+++
T Consensus       164 ~vF~G~~~~GHY~~~~~~~--~--~~vDG~~~~~~~  195 (211)
T 3mp2_A          164 AVYTGTTQNGHYMVDDIEH--G--YCVDGMGIKPLK  195 (211)
T ss_dssp             EEEESCTTTCEEEEEETTT--T--EEEETTEEECCC
T ss_pred             EEEEcCCCCceEEEEeccc--c--eEEeCCceeEcc
Confidence            3457889999999997653  2  899999999976

>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R

Probab=82.65  E-value=4.5  Score=24.18  Aligned_cols=45  Identities=16%  Similarity=0.225  Sum_probs=31.0

Q ss_pred             eee--cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcC
Q psy7177           5 PSK--GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRD   56 (66)
Q Consensus         5 H~G--~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~   56 (66)
                      |.|  ....+|-+-++.-  ++.||.+||+...+-+++..     =+|+|..-+
T Consensus       110 hAgIflkg~eHAVFa~~T--S~GWyaiDDe~fypwtPdps-----dVLVfvPyD  156 (167)
T 1qmy_A          110 HAGIFLKGQEHAVFACVT--SNGWYAIDDEDFYPWTPDPS-----DVLVFVPYD  156 (167)
T ss_dssp             EEEEEEETTTEEEEEECC--TTSSEEEETTEEEECCCCGG-----GEEEEEECC
T ss_pred             hhheeecCCCceEEEEEc--cCceEEecccccccCCCChh-----hEEEEccCC
Confidence            556  3456788777765  56899999999999766432     256665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-11
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	3e-11
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	9e-10
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-09
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	3e-08

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 2e-11
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 8   GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKK 54
           G+  GHYTAY  +   + W  F+D  V +        + AYILFY  
Sbjct: 301 GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 3e-11
 Identities = 21/48 (43%), Positives = 26/48 (54%)

Query: 6   SKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYK 53
           S     GHYTAY   P T EWH FND +V          ++AY+LFY+
Sbjct: 287 SGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 334

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 9e-10
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 7   KGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYKKR 55
           +  S+GHY ++       EW  F+D+ V    P+D        D++ AY+L Y  R
Sbjct: 329 RSSSSGHYVSWVKRKQ-DEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR 383

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 2e-09
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 7   KGVSAGHYTAYTLHP-NTKEWHYFNDETVLEQRPQD-------EDFNNAYILFYKKRD 56
               +GHY A+     +  +W+ FND+ V     +         + ++A IL YK   
Sbjct: 339 ANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG 396

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 3e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 10  SAGHYTAYTLHPNTKEWHYFNDETVLEQRPQD---------------EDFNNAYILFYKK 54
             GHY  Y       +W  F+D+ V     ++                   NAY+L Y +
Sbjct: 254 HGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIR 313

Query: 55  RDEDSDV 61
             + S+V
Sbjct: 314 ESKLSEV 320

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.89
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.88
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.88
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.85
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.84
d1v8ha1	106	Sulfur oxidation protein SoxZ {Thermus thermophilu	83.87
d1qmya_	156	FMDV leader protease {Foot-and-mouth disease virus	82.32

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.6e-23  Score=131.08  Aligned_cols=54  Identities=39%  Similarity=0.660  Sum_probs=52.0

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEE
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKK   54 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r   54 (66)
                      |||+|.|++++|||++|+|+..+++|++|||++|++++.+++.+++||||||+|
T Consensus       282 ~vi~H~G~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiL~Y~r  335 (336)
T d2hd5a1         282 AVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL  335 (336)
T ss_dssp             EEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGSCCTTEEEEEEEE
T ss_pred             EEEEEeCCCCCceEEEEEEcCCCCeEEEEECCceeECCHHHhccCCCEEEEEEc
Confidence            699999999999999999998788999999999999999999999999999998

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.7e-24  Score=133.28  Aligned_cols=55  Identities=31%  Similarity=0.552  Sum_probs=52.4

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEc
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~   55 (66)
                      |||+|.|++++|||+||+|+..+++|++|||+.|++++++++.+++||||||+|.
T Consensus       294 avi~H~G~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~~~~v~~~~aYlLfY~r~  348 (348)
T d2gfoa1         294 SVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL  348 (348)
T ss_dssp             EEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC
T ss_pred             EEEEEeCCCCCceEEEEEEeCCcCeEEEEECCcCeECCHHHccCCCcEEEEEEeC
Confidence            7999999999999999999887899999999999999999999999999999984

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.1e-23  Score=132.63  Aligned_cols=56  Identities=25%  Similarity=0.413  Sum_probs=49.4

Q ss_pred             CEEEeee-cCCCCeEEEEEECCC-CCcEEEEcCceEEEcCCCcCCC-------CCeEEEEEEEcC
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPN-TKEWHYFNDETVLEQRPQDEDF-------NNAYILFYKKRD   56 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~-~~~W~~fdD~~V~~~~~~~~~~-------~~aYiLfY~r~~   56 (66)
                      |||+|.| ++++|||+||+|+.. +++|++|||+.|++++.+++..       .+||||||+|.+
T Consensus       332 aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r~~  396 (397)
T d1vjva_         332 GVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFG  396 (397)
T ss_dssp             EEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred             EEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECCHHHHHHhhCCCCCCeEEEEEEEecC
Confidence            6999999 789999999999753 5789999999999999887653       469999999986

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9e-23  Score=131.10  Aligned_cols=57  Identities=25%  Similarity=0.454  Sum_probs=50.7

Q ss_pred             CEEEeeecCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCC---------------CCCeEEEEEEEcCC
Q psy7177           1 MCVRPSKGVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDED---------------FNNAYILFYKKRDE   57 (66)
Q Consensus         1 avv~H~G~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~---------------~~~aYiLfY~r~~~   57 (66)
                      |||+|.|++.+|||+||+|+..+++|++|||+.|++++.+++.               +.+||||||+|++.
T Consensus       245 ~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~~~  316 (347)
T d1nbfa_         245 AVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK  316 (347)
T ss_dssp             EEEEEEEETTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEGGG
T ss_pred             EEEEecCCCCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEecCc
Confidence            6999999889999999999887889999999999999887764               34799999999864

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-22  Score=128.72  Aligned_cols=54  Identities=30%  Similarity=0.527  Sum_probs=48.0

Q ss_pred             CEEEeee-cCCCCeEEEEEECCCCCcEEEEcCceEEEcCCCcCCC-------CCeEEEEEEEc
Q psy7177           1 MCVRPSK-GVSAGHYTAYTLHPNTKEWHYFNDETVLEQRPQDEDF-------NNAYILFYKKR   55 (66)
Q Consensus         1 avv~H~G-~~~~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~-------~~aYiLfY~r~   55 (66)
                      |||+|.| ++.+|||+||+|+. +++|++|||+.|++++.+++..       ..||||||+||
T Consensus       322 avi~H~G~s~~~GHY~a~vk~~-~~~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~  383 (383)
T d2ayna1         322 AVLTHQGRSSSSGHYVSWVKRK-QDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR  383 (383)
T ss_dssp             EEEEEESSSTTSSEEEEEEEEE-TTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred             EEEEEECCCCCCCCcEEEEECC-CCeEEEEECCceEEeCHHHHHHhhCCCCCCceEEEEEEEC
Confidence            6999999 89999999999975 6899999999999998887653       45999999986

>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: SoxZ-like
domain: Sulfur oxidation protein SoxZ
species: Thermus thermophilus [TaxId: 274]

Probab=83.87  E-value=1.1  Score=23.59  Aligned_cols=40  Identities=28%  Similarity=0.384  Sum_probs=31.9

Q ss_pred             eEEEEEECCCCCcEEEEcCceEEEcCCCcCCCCCeEEEEEEEcCCCC
Q psy7177          13 HYTAYTLHPNTKEWHYFNDETVLEQRPQDEDFNNAYILFYKKRDEDS   59 (66)
Q Consensus        13 HY~a~~~~~~~~~W~~fdD~~V~~~~~~~~~~~~aYiLfY~r~~~~~   59 (66)
                      ||+..+.       +.+|+..|-..+.....++++|+-|+-+-....
T Consensus        45 ~~I~~v~-------v~~ng~~v~~a~~~~svS~NP~~~F~~~~~~~g   84 (106)
T d1v8ha1          45 KYINLVE-------VYFEGEKVAEARPGPSTSANPLYAFKFKAEKAG   84 (106)
T ss_dssp             BCEEEEE-------EEETTEEEEEECCCSSCCSSCEEEEEEECCSCE
T ss_pred             HheEEEE-------EEECCEEEEEEEcCCcccCCCeEEEEEccCCCc
Confidence            5555554       478999999999999999999999998765443

>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: FMDV leader protease
domain: FMDV leader protease
species: Foot-and-mouth disease virus [TaxId: 12110]

Probab=82.32  E-value=0.73  Score=25.91  Aligned_cols=34  Identities=15%  Similarity=0.226  Sum_probs=25.7

Q ss_pred             eee-cCC-CCeEEEEEECCCCCcEEEEcCceEEEcCCC
Q psy7177           5 PSK-GVS-AGHYTAYTLHPNTKEWHYFNDETVLEQRPQ   40 (66)
Q Consensus         5 H~G-~~~-~GHY~a~~~~~~~~~W~~fdD~~V~~~~~~   40 (66)
                      |.| .+. .+|-+-++.-  +..||.+||+...+-+++
T Consensus       110 hAgiflkg~eHAVFa~~T--S~GWyaiDDe~fypwtPd  145 (156)
T d1qmya_         110 HAGIFLKGQEHAVFACVT--SNGWYAIDDEDFYPWTPD  145 (156)
T ss_dssp             EEEEEEETTTEEEEEECC--TTSSEEEETTEEEECCCC
T ss_pred             eeeeEecCCCceEEEEEc--cCceEEecccccccCCCC
Confidence            666 444 6788777765  567999999999997664