Psyllid ID: psy719

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40-----
Protein Sequence
MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHEEEEEccEEEEEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHEEEEccccccEEEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE
Flexible Loop (DISEMBL)
mgstirkrklyEEFLSRVSILVqcgskkmgivAKHVTCAMVEKGE
Low Complexity Region (SEG)
MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE
Disordered region (IsUnstruct)
********KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMV****
Disordered Region (DISOPRED)
******K*KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEK**
Disordered Region (DISEMBL)
MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE
Disordered Region (DISPRO)
**STIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	45	2.2.26 [Sep-21-2011]
P16905	376	cAMP-dependent protein ki	no	N/A	1.0	0.119	0.533	0.0002
P31321	381	cAMP-dependent protein ki	yes	N/A	1.0	0.118	0.511	0.0007
P81377	381	cAMP-dependent protein ki	no	N/A	1.0	0.118	0.511	0.0008
P12849	381	cAMP-dependent protein ki	yes	N/A	1.0	0.118	0.511	0.0008

>sp|P16905|KAPR1_DROME cAMP-dependent protein kinase type I regulatory subunit OS=Drosophila melanogaster GN=Pka-R1 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 28/45 (62%)

Query: 1   MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
           MGSTIRKRK+YEEFLSRVSIL      +   VA  +     + GE
Sbjct: 231 MGSTIRKRKMYEEFLSRVSILESLDKWERLTVADSLETCSFDDGE 275

Drosophila melanogaster (taxid: 7227)

>sp|P31321|KAP1_HUMAN cAMP-dependent protein kinase type I-beta regulatory subunit OS=Homo sapiens GN=PRKAR1B PE=1 SV=4

 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query: 1   MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
           MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct: 236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells.

Homo sapiens (taxid: 9606)

>sp|P81377|KAP1_RAT cAMP-dependent protein kinase type I-beta regulatory subunit OS=Rattus norvegicus GN=Prkar1b PE=2 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query: 1   MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
           MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct: 236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells.

Rattus norvegicus (taxid: 10116)

>sp|P12849|KAP1_MOUSE cAMP-dependent protein kinase type I-beta regulatory subunit OS=Mus musculus GN=Prkar1b PE=2 SV=2

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query: 1   MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
           MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct: 236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

Regulatory subunit of the cAMP-dependent protein kinases involved in cAMP signaling in cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	45
FB|FBgn0259243	376	Pka-R1 "cAMP-dependent protein	0.977	0.117	0.565	8.1e-05
UNIPROTKB|H7BYW5	242	PRKAR1B "cAMP-dependent protei	1.0	0.185	0.511	0.00016
UNIPROTKB|G3N3X4	235	PRKAR1B "Uncharacterized prote	1.0	0.191	0.488	0.0002
UNIPROTKB|C9JSK5	297	PRKAR1B "cAMP-dependent protei	1.0	0.151	0.511	0.00025
ZFIN|ZDB-GENE-060929-580	380	prkar1b "protein kinase, cAMP-	1.0	0.118	0.511	0.00029
UNIPROTKB|E1C2U6	381	PRKAR1B "Uncharacterized prote	1.0	0.118	0.511	0.00029
UNIPROTKB|F1M9X5	359	Prkar1b "cAMP-dependent protei	1.0	0.125	0.511	0.00034
ZFIN|ZDB-GENE-050116-2	379	prkar1aa "protein kinase, cAMP	1.0	0.118	0.488	0.00037
UNIPROTKB|P31321	381	PRKAR1B "cAMP-dependent protei	1.0	0.118	0.511	0.00037
MGI|MGI:97759	381	Prkar1b "protein kinase, cAMP	1.0	0.118	0.511	0.00037

FB|FBgn0259243 Pka-R1 "cAMP-dependent protein kinase R1" [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 26/46 (56%), Positives = 31/46 (67%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHV-TCAMVEKGE 45
             MGSTIRKRK+YEEFLSRVSIL      +   VA  + TC+  + GE
Sbjct:   231 MGSTIRKRKMYEEFLSRVSILESLDKWERLTVADSLETCSF-DDGE 275

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISS;NAS;IMP

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA;ISS

GO:0008355 "olfactory learning" evidence=NAS;IMP

GO:0030551 "cyclic nucleotide binding" evidence=NAS

GO:0007015 "actin filament organization" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0007591 "molting cycle, chitin-based cuticle" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=NAS

GO:0007165 "signal transduction" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0045471 "response to ethanol" evidence=IDA

UNIPROTKB|H7BYW5 PRKAR1B "cAMP-dependent protein kinase type I-beta regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:    97 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 141

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

UNIPROTKB|G3N3X4 PRKAR1B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 95 (38.5 bits), Expect = 0.00020, P = 0.00020
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKR++YEEFLS+VSIL      +   VA  +     E GE
Sbjct:    90 MGSTLRKRRMYEEFLSKVSILASLEKWERLTVADALEPVQFEDGE 134

GO:0007611 "learning or memory" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

UNIPROTKB|C9JSK5 PRKAR1B "cAMP-dependent protein kinase type I-beta regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00025, P = 0.00025
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:   236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

ZFIN|ZDB-GENE-060929-580 prkar1b "protein kinase, cAMP-dependent, regulatory, type I, beta" [Danio rerio (taxid:7955)]

 Score = 97 (39.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:   235 MGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGE 279

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

UNIPROTKB|E1C2U6 PRKAR1B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 97 (39.2 bits), Expect = 0.00029, P = 0.00029
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:   236 MGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGE 280

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

UNIPROTKB|F1M9X5 Prkar1b "cAMP-dependent protein kinase type I-beta regulatory subunit" [Rattus norvegicus (taxid:10116)]

 Score = 96 (38.9 bits), Expect = 0.00034, P = 0.00034
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:   214 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 258

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

ZFIN|ZDB-GENE-050116-2 prkar1aa "protein kinase, cAMP-dependent, regulatory, type I, alpha (tissue specific extinguisher 1) a" [Danio rerio (taxid:7955)]

 Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
 Identities = 22/45 (48%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E G+
Sbjct:   234 MGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALETVQFEDGQ 278

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|P31321 PRKAR1B "cAMP-dependent protein kinase type I-beta regulatory subunit" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:   236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

GO:0030552 "cAMP binding" evidence=IEA

GO:0007611 "learning or memory" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=NAS

GO:0005952 "cAMP-dependent protein kinase complex" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006833 "water transport" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007202 "activation of phospholipase C activity" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0034199 "activation of protein kinase A activity" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

MGI|MGI:97759 Prkar1b "protein kinase, cAMP dependent regulatory, type I beta" [Mus musculus (taxid:10090)]

 Score = 96 (38.9 bits), Expect = 0.00037, P = 0.00037
 Identities = 23/45 (51%), Positives = 28/45 (62%)

Query:     1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
             MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct:   236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;TAS

GO:0005886 "plasma membrane" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0007611 "learning or memory" evidence=IMP

GO:0008283 "cell proliferation" evidence=TAS

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO;ISS

GO:0009887 "organ morphogenesis" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0030552 "cAMP binding" evidence=ISO

GO:0045859 "regulation of protein kinase activity" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P12849	KAP1_MOUSE	No assigned EC number	0.5111	1.0	0.1181	yes	N/A
P31321	KAP1_HUMAN	No assigned EC number	0.5111	1.0	0.1181	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	45
KOG0614|consensus	732		99.22
KOG1113|consensus	368		99.1
PLN02868	413	acyl-CoA thioesterase family protein	96.85
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	96.84
KOG0498|consensus	727		96.7
KOG1113|consensus	368		96.39
PLN03192	823	Voltage-dependent potassium channel; Provisional	96.38
COG2905	610	Predicted signal-transduction protein containing c	96.24
cd00038	115	CAP_ED effector domain of the CAP family of transc	93.68
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	93.35
KOG0500|consensus	536		93.16
KOG0614|consensus	732		90.11
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	86.66
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	80.3

>KOG0614|consensus

Probab=99.22  E-value=5e-12  Score=83.15  Aligned_cols=45  Identities=18%  Similarity=0.307  Sum_probs=43.1

Q ss_pred             CchHHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         1 ~~~~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      |.++.+++++|..||++||+|++|+++-|.||||+|++++|++|+
T Consensus       260 ~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~  304 (732)
T KOG0614|consen  260 MRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGE  304 (732)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCc
Confidence            468999999999999999999999999999999999999999986

>KOG1113|consensus

Probab=99.10  E-value=3.1e-11  Score=75.73  Aligned_cols=45  Identities=38%  Similarity=0.488  Sum_probs=43.1

Q ss_pred             CchHHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            1 MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         1 ~~~~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      |.++.++|.+|+.||++||+|++|..+++.+|||+|.++.|++|+
T Consensus       228 ~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~  272 (368)
T KOG1113|consen  228 MKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGE  272 (368)
T ss_pred             eccchhhhhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCc
Confidence            567899999999999999999999999999999999999999995

>PLN02868 acyl-CoA thioesterase family protein

Probab=96.85  E-value=0.0019  Score=40.74  Aligned_cols=37  Identities=30%  Similarity=0.315  Sum_probs=33.9

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +....+|+++|+|+.|++.++.+|+..++..+|.+|+
T Consensus         4 ~~~~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge   40 (413)
T PLN02868          4 ESVVEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGE   40 (413)
T ss_pred             HHHHHHHhcCcccccCCHHHHHHHHHhceEEEECCCC
Confidence            3466889999999999999999999999999999986

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=96.84  E-value=0.0015  Score=37.72  Aligned_cols=37  Identities=5%  Similarity=0.012  Sum_probs=33.9

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .....+|+.+|+|+.|++.++..++.......|++|+
T Consensus         3 ~~~~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge   39 (236)
T PRK09392          3 REDLIRLRNLPLFADMADATFERLMRGAFLQRFPPGT   39 (236)
T ss_pred             chHHHHHhcCccccCCCHHHHHHHHhhcceeecCCCC
Confidence            3456799999999999999999999999999999996

>KOG0498|consensus

Probab=96.70  E-value=0.002  Score=43.99  Aligned_cols=39  Identities=15%  Similarity=0.307  Sum_probs=35.9

Q ss_pred             HHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            7 KRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         7 kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +|-.+.+++++||+|+.+++.-|..|++-|++++|.+||
T Consensus       413 ~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge  451 (727)
T KOG0498|consen  413 KRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGE  451 (727)
T ss_pred             HHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCC
Confidence            355678999999999999999999999999999999986

>KOG1113|consensus

Probab=96.39  E-value=0.0069  Score=38.74  Aligned_cols=41  Identities=17%  Similarity=0.216  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .+.++...+++++.-+|++|+++++..+.||+.++.+.+|+
T Consensus       114 ~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~  154 (368)
T KOG1113|consen  114 DETRRRLEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGE  154 (368)
T ss_pred             HHHHHHHHHHHHhccccccCCHHHHHHHHHhhceeeecCCc
Confidence            34566678999999999999999999999999999999985

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=96.38  E-value=0.0061  Score=41.29  Aligned_cols=38  Identities=8%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++.+..++++||+|+++++..+..|+..+++++|.+||
T Consensus       369 ~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge  406 (823)
T PLN03192        369 QHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPRE  406 (823)
T ss_pred             HHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCC
Confidence            45567889999999999999999999999999999986

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.24  E-value=0.0046  Score=41.56  Aligned_cols=35  Identities=17%  Similarity=0.259  Sum_probs=33.2

Q ss_pred             HHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           11 YEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        11 ~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ..+||...|-|..|+++++.+|.++|+..+|.+||
T Consensus         5 ~~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge   39 (610)
T COG2905           5 PDQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGE   39 (610)
T ss_pred             HHHHHhcCCCcccCCHHHHHHHHhhhccccccCCC
Confidence            46899999999999999999999999999999996

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=93.68  E-value=0.087  Score=25.87  Aligned_cols=26  Identities=12%  Similarity=0.172  Sum_probs=23.8

Q ss_pred             ccCCCChHHHhhHhhhhheeeecCCC
Q psy719           20 ILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        20 ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +|+.|++..+..+++.+....|.+|+
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~   26 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGE   26 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCC
Confidence            57899999999999999999999886

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=93.35  E-value=0.12  Score=25.44  Aligned_cols=26  Identities=12%  Similarity=0.183  Sum_probs=23.8

Q ss_pred             ccCCCChHHHhhHhhhhheeeecCCC
Q psy719           20 ILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        20 ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +|.+|++..+..++..+....|.+|+
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~   26 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGE   26 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCC
Confidence            47889999999999999999999986

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>KOG0500|consensus

Probab=93.16  E-value=0.095  Score=35.03  Aligned_cols=37  Identities=14%  Similarity=0.258  Sum_probs=34.6

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +-+.+-|++|+||++..+.-|.-+.--|++..|.+||
T Consensus       303 nvh~dTLkkV~iF~~ce~~lL~elVLklk~qvfSPgD  339 (536)
T KOG0500|consen  303 NVHLDTLKKVRIFQDCEAGLLVELVLKLKPQVFSPGD  339 (536)
T ss_pred             HHHHHHHHhhhHHHhcchhHHHHHHHHhcceeeCCCC
Confidence            4578899999999999999999999999999999997

>KOG0614|consensus

Probab=90.11  E-value=0.26  Score=33.77  Aligned_cols=40  Identities=8%  Similarity=0.139  Sum_probs=35.3

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .-++.+.+.+..=.+|++|+..++..|.+||-+..|.+|.
T Consensus       147 ~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs  186 (732)
T KOG0614|consen  147 GAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGS  186 (732)
T ss_pred             cHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCc
Confidence            3466778888888999999999999999999999999884

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=86.66  E-value=0.82  Score=25.64  Aligned_cols=26  Identities=4%  Similarity=-0.103  Sum_probs=23.5

Q ss_pred             ccCCCChHHHhhHhhhhheeeecCCC
Q psy719           20 ILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        20 ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +-+.|++.++..+++.+...+|++|+
T Consensus         4 ~~~~~~~~~~~~l~~~~~~~~~~kg~   29 (211)
T PRK11753          4 LGKPQTDPTLEWFLSHCHIHKYPAKS   29 (211)
T ss_pred             ccCCCCHHHHHHHHhhCeEEEeCCCC
Confidence            34789999999999999999999986

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=80.30  E-value=2.3  Score=24.38  Aligned_cols=31  Identities=13%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             hhcCcccCCCChHHHhhHhhhhhe-eeecCCC
Q psy719           15 LSRVSILVQCGSKKMGIVAKHVTC-AMVEKGE   45 (45)
Q Consensus        15 L~~V~ilk~L~~~~l~kiad~l~~-~~y~~Ge   45 (45)
                      +++-+.+-+|++.++..|+..... ..|.+|+
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge   46 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQ   46 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCC
Confidence            444555557999999999998864 6799886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	45
4din_B	381	Novel Localization And Quaternary Structure Of The		6e-05
1ne4_A	283	Crystal Structure Of Rp-Camp Binding R1a Subunit Of		7e-05
1rl3_A	288	Crystal Structure Of Camp-free R1a Subunit Of Pka L		8e-05
2qcs_B	291	A Complex Structure Between The Catalytic And Regul		9e-05

>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri Beta Holoenzyme Length = 381

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/45 (51%), Positives = 28/45 (62%)
Query: 1   MGSTIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE 45
           MGST+RKRK+YEEFLS+VSIL      +   VA  +     E GE
Sbjct: 236 MGSTLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE 280

>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 1   MGSTIRKRKLYEEFLSRVSIL 21
           MGST+RKRK+YEEFLS+VSIL
Sbjct: 141 MGSTLRKRKMYEEFLSKVSIL 161

>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 1   MGSTIRKRKLYEEFLSRVSIL 21
           MGST+RKRK+YEEFLS+VSIL
Sbjct: 143 MGSTLRKRKMYEEFLSKVSIL 163

>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/21 (85%), Positives = 21/21 (100%)
Query: 1   MGSTIRKRKLYEEFLSRVSIL 21
           MGST+RKRK+YEEFLS+VSIL
Sbjct: 145 MGSTLRKRKMYEEFLSKVSIL 165
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	45
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	98.06
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	98.05
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	98.03
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	97.79
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	97.79
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	97.77
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	97.75
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	97.73
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	97.64
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	97.62
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	97.62
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	97.6
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	97.59
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	97.58
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	97.57
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	97.57
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	97.55
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	97.53
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	97.5
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	97.49
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	97.47
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	97.42
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	97.41
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	97.41
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	97.4
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	97.38
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	97.31
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	97.28
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	97.17
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	97.09
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	97.07
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	97.03
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	97.01
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	96.88
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	96.78
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	96.72
1ft9_A	222	Carbon monoxide oxidation system transcription reg	96.63
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	96.6
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	96.25
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	96.19
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	95.83
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	95.75
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	95.62
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	93.52
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	90.04
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	83.34
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	82.09

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=98.06  E-value=4.1e-06  Score=44.46  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +..+++.+.++|+++|+|++|++.++..|+..++...|.+|+
T Consensus        29 ~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~   70 (161)
T 3idb_B           29 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGE   70 (161)
T ss_dssp             CHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTC
T ss_pred             CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCC
Confidence            456677889999999999999999999999999999999986

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=98.05  E-value=8.3e-06  Score=43.05  Aligned_cols=42  Identities=5%  Similarity=0.033  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ....++.+..+|+++|+|..|++.++..|+..++...|.+|+
T Consensus        29 ~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   70 (154)
T 3pna_A           29 DYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGE   70 (154)
T ss_dssp             CHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             CHHHHHHHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCC
Confidence            445677889999999999999999999999999999999986

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=98.03  E-value=8.2e-06  Score=42.24  Aligned_cols=41  Identities=7%  Similarity=0.037  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...++.+..+|+++|+|++|++.++..|+..++...|.+|+
T Consensus        15 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   55 (139)
T 3ocp_A           15 PQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDS   55 (139)
T ss_dssp             HHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSC
T ss_pred             HHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCC
Confidence            45667789999999999999999999999999999999986

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=97.79  E-value=4.2e-05  Score=39.21  Aligned_cols=37  Identities=11%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ....++|+++|+|..|++.++..++..++...|.+|+
T Consensus         7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   43 (138)
T 1vp6_A            7 VRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA   43 (138)
T ss_dssp             HHHHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCC
Confidence            4467899999999999999999999999999999986

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=97.79  E-value=2.9e-05  Score=40.29  Aligned_cols=40  Identities=8%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .......++|+++|+|..|++.++..++..+....|.+|+
T Consensus         5 ~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   44 (154)
T 2z69_A            5 EFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGA   44 (154)
T ss_dssp             HHHHHHHHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTC
T ss_pred             CCChhHHHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCC
Confidence            3445678899999999999999999999999999999986

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=97.77  E-value=3.3e-05  Score=40.38  Aligned_cols=38  Identities=8%  Similarity=0.092  Sum_probs=34.7

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+..+|+++|+|++|++.++..++..++...|.+|+
T Consensus        22 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   59 (160)
T 4f8a_A           22 VHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGD   59 (160)
T ss_dssp             HHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCC
Confidence            34567899999999999999999999999999999986

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=97.75  E-value=2.8e-05  Score=42.51  Aligned_cols=40  Identities=5%  Similarity=0.173  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+.+.++|+++|+|++|++.++..++..+....|.+|+
T Consensus        32 ~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge   71 (187)
T 3gyd_A           32 KYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDC   71 (187)
T ss_dssp             GGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCC
Confidence            3456789999999999999999999999999999999986

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=97.73  E-value=3.6e-05  Score=42.06  Aligned_cols=38  Identities=11%  Similarity=0.166  Sum_probs=34.9

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+..+|+++|+|+++++..+..|+..+++..|.+|+
T Consensus        66 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge  103 (198)
T 2ptm_A           66 NYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPAD  103 (198)
T ss_dssp             HHHTHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHhcCcchhcCCHHHHHHHHHhccceeeCCCC
Confidence            34567899999999999999999999999999999986

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=97.64  E-value=8.1e-05  Score=42.72  Aligned_cols=41  Identities=10%  Similarity=0.062  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...++...++|+++|+|++|++.++..|++++....|.+|+
T Consensus        31 ~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   71 (299)
T 3shr_A           31 ERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDS   71 (299)
T ss_dssp             HHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCC
Confidence            35567789999999999999999999999999999999986

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=97.62  E-value=6.9e-05  Score=41.44  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=34.4

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +...++|+++|+|++|++.++..++.+++...|.+|+
T Consensus         3 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   39 (246)
T 3of1_A            3 QRLEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGA   39 (246)
T ss_dssp             HHHHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCC
Confidence            3467899999999999999999999999999999986

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=97.62  E-value=5.3e-05  Score=43.18  Aligned_cols=42  Identities=5%  Similarity=0.033  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +.+.++...++|+++|+|+.|++.++..|+..+....|.+|+
T Consensus        30 s~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   71 (291)
T 2qcs_B           30 DYKTMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGE   71 (291)
T ss_dssp             CHHHHHHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTC
T ss_pred             CHHHHHHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCC
Confidence            456677899999999999999999999999999999999986

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=97.60  E-value=7e-05  Score=41.42  Aligned_cols=40  Identities=20%  Similarity=0.414  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .++..+..+++++|+|+++++.++.+++++++...|.+|+
T Consensus       118 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~  157 (246)
T 3of1_A          118 KKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGE  157 (246)
T ss_dssp             HHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTC
T ss_pred             HHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCC
Confidence            4567788999999999999999999999999999999986

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=97.59  E-value=2.4e-05  Score=40.10  Aligned_cols=34  Identities=12%  Similarity=0.042  Sum_probs=32.0

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .++|+++|+|++|++.++..++..++...|.+|+
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   38 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGS   38 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTC
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCC
Confidence            4689999999999999999999999999999986

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=97.58  E-value=4.4e-05  Score=41.92  Aligned_cols=37  Identities=3%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ..+..+|+++|+|+++++..+..|+..+++..|.+|+
T Consensus        68 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge  104 (202)
T 3bpz_A           68 FNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGD  104 (202)
T ss_dssp             HHTHHHHHTCHHHHTSCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHhcCCchhcCCHHHHHHHHHhCCceEECCCC
Confidence            5567899999999999999999999999999999986

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=97.57  E-value=6.7e-05  Score=45.26  Aligned_cols=42  Identities=48%  Similarity=0.581  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...++..+..|++++|+|.+|+++++.+|++++....|.+|+
T Consensus       239 ~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge  280 (381)
T 4din_B          239 TLRKRKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGE  280 (381)
T ss_dssp             HHHHHHHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSC
T ss_pred             hHHHHHHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCC
Confidence            345677889999999999999999999999999999999986

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=97.57  E-value=7.5e-05  Score=43.51  Aligned_cols=34  Identities=18%  Similarity=0.235  Sum_probs=32.4

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .++|+++|+|++|++.++..|+.+++...|++|+
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   45 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQ   45 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCC
Confidence            5799999999999999999999999999999986

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=97.55  E-value=4.6e-05  Score=41.72  Aligned_cols=34  Identities=12%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .+||+++|+|.+|++.++..++..++...|.+|+
T Consensus         2 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   35 (220)
T 3dv8_A            2 MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGT   35 (220)
T ss_dssp             ---CCSCGGGGTSCHHHHHHHHTTCEEEEECTTC
T ss_pred             cchHHhChhhhcCCHHHHHHHHhhCceEEeCCCC
Confidence            3689999999999999999999999999999996

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=97.53  E-value=7.6e-05  Score=38.37  Aligned_cols=38  Identities=13%  Similarity=0.163  Sum_probs=34.9

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeec-CCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVE-KGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~-~Ge   45 (45)
                      .+....+|+++|+|..|++.++..|+..+....|. +|+
T Consensus        11 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~   49 (134)
T 2d93_A           11 IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGA   49 (134)
T ss_dssp             HHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSC
T ss_pred             HHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCC
Confidence            44678899999999999999999999999999999 886

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=97.50  E-value=5e-05  Score=39.06  Aligned_cols=34  Identities=9%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .++|+++|+|.+|++.++..++..++...|.+|+
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   37 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGD   37 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCC
Confidence            5689999999999999999999999999999986

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=97.49  E-value=0.00011  Score=40.61  Aligned_cols=34  Identities=21%  Similarity=0.120  Sum_probs=32.3

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .++|+++|+|.+|++.++..++..++...|.+|+
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   38 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDE   38 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTC
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCC
Confidence            5799999999999999999999999999999986

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=97.47  E-value=0.00017  Score=43.45  Aligned_cols=41  Identities=7%  Similarity=0.053  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...++...++|+++|+|++|++.++..|++++....|.+|+
T Consensus       122 ~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge  162 (381)
T 4din_B          122 YKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGE  162 (381)
T ss_dssp             HHHHHHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTC
T ss_pred             HHHHHHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCC
Confidence            34566788999999999999999999999999999999986

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=97.42  E-value=3.3e-05  Score=39.63  Aligned_cols=33  Identities=6%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             HHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           13 EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        13 ~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++|+++|+|..|++.++..|+..+....|.+|+
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   38 (137)
T 1wgp_A            6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKS   38 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTE
T ss_pred             HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCC
Confidence            579999999999999999999999999999985

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=97.41  E-value=7.5e-05  Score=41.45  Aligned_cols=38  Identities=5%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +....++|+++|+|..|++.++..++..++...|.+|+
T Consensus         6 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   43 (237)
T 3fx3_A            6 HEAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGE   43 (237)
T ss_dssp             CHHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTC
T ss_pred             hHHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCC
Confidence            34578999999999999999999999999999999986

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=97.41  E-value=0.00013  Score=44.64  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            4 TIRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         4 ~~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +...++...++|+++|+|++|++.++..|++++....|.+|+
T Consensus       136 s~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge  177 (416)
T 3tnp_B          136 TDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGE  177 (416)
T ss_dssp             CHHHHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             CHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCC
Confidence            446677889999999999999999999999999999999986

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=97.40  E-value=0.00011  Score=40.38  Aligned_cols=36  Identities=8%  Similarity=0.163  Sum_probs=33.4

Q ss_pred             HHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           10 LYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        10 ~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...++|+++|+|++|++.++..++..++...|.+|+
T Consensus         6 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   41 (227)
T 3dkw_A            6 VHQQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGA   41 (227)
T ss_dssp             SSHHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTE
T ss_pred             hHHHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCC
Confidence            356899999999999999999999999999999985

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=97.38  E-value=0.00011  Score=42.13  Aligned_cols=41  Identities=24%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ..++..+..+|+++|+|..|++.++..++..++...|.+|+
T Consensus       149 ~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~  189 (299)
T 3shr_A          149 LIKHTEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGE  189 (299)
T ss_dssp             HHHHHHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTC
T ss_pred             HHHHHHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCC
Confidence            45677899999999999999999999999999999999986

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=97.31  E-value=8.8e-05  Score=40.92  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             HHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           11 YEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        11 ~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ..++|+++|+|..|++.++..++..+....|.+|+
T Consensus         4 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   38 (227)
T 3d0s_A            4 MDEILARAGIFQGVEPSAIAALTKQLQPVDFPRGH   38 (227)
T ss_dssp             CHHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTC
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCC
Confidence            45789999999999999999999999999999986

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=97.28  E-value=0.00019  Score=39.16  Aligned_cols=31  Identities=3%  Similarity=0.153  Sum_probs=27.2

Q ss_pred             hhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           15 LSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        15 L~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      |+++|+|++|++.++..++..++...|.+|+
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   31 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGK   31 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTC
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCC
Confidence            6789999999999999999999999999986

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=97.17  E-value=0.00013  Score=39.39  Aligned_cols=36  Identities=11%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             HHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           10 LYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        10 ~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++..+++.+|.|.+|++.++..++..++...|++|+
T Consensus         4 m~~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   39 (194)
T 3dn7_A            4 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKE   39 (194)
T ss_dssp             CCHHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCC
Confidence            356799999999999999999999999999999996

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=97.09  E-value=0.00044  Score=38.50  Aligned_cols=37  Identities=8%  Similarity=0.105  Sum_probs=33.6

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhh--hheeeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKH--VTCAMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~--l~~~~y~~Ge   45 (45)
                      .....+|+++|+|..|++.++..++..  .....|.+|+
T Consensus        14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge   52 (232)
T 1zyb_A           14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGE   52 (232)
T ss_dssp             HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTC
T ss_pred             HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCC
Confidence            345778999999999999999999998  9999999986

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=97.07  E-value=0.0009  Score=40.54  Aligned_cols=40  Identities=13%  Similarity=0.030  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+...++|+++|+|++|++.++..|+..+....|.+|+
T Consensus        35 ~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   74 (469)
T 1o7f_A           35 EDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGI   74 (469)
T ss_dssp             HHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCC
Confidence            4456688999999999999999999999999999999986

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=97.03  E-value=0.00063  Score=37.40  Aligned_cols=32  Identities=9%  Similarity=0.160  Sum_probs=29.4

Q ss_pred             HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .|.++|+|+++++..+..|+..+++..|.+|+
T Consensus        76 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge  107 (212)
T 3ukn_A           76 ELLQLPLFESASRGCLRSLSLIIKTSFCAPGE  107 (212)
T ss_dssp             GGGGSGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHhcHHhhcCCHHHHHHHHHHhheEEeCCCC
Confidence            34589999999999999999999999999996

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=97.01  E-value=0.0014  Score=37.23  Aligned_cols=40  Identities=45%  Similarity=0.557  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ..+..+..+++++++|..++..++..++++++...|.+|+
T Consensus       150 ~~~~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~  189 (291)
T 2qcs_B          150 RKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQ  189 (291)
T ss_dssp             HHHHHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCC
Confidence            3456678999999999999999999999999999999986

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=96.88  E-value=0.00018  Score=44.06  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            7 KRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         7 kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++..+..||+++|+|.+|++.++.+|++++....|.+|+
T Consensus       261 ~~~~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge  299 (416)
T 3tnp_B          261 KRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGE  299 (416)
T ss_dssp             HSSSSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCC
Confidence            344567799999999999999999999999999999986

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=96.78  E-value=0.00073  Score=37.07  Aligned_cols=35  Identities=3%  Similarity=-0.081  Sum_probs=21.2

Q ss_pred             HHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           11 YEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        11 ~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+|+++|+|..|++.++..++...+...|++|+
T Consensus         9 ~~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~   43 (230)
T 3iwz_A            9 VTTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRT   43 (230)
T ss_dssp             -------------CCHHHHHHHHTTSEEEEECTTC
T ss_pred             ehhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCC
Confidence            46789999999999999999999999999999986

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=96.72  E-value=0.0002  Score=39.34  Aligned_cols=33  Identities=18%  Similarity=0.058  Sum_probs=31.2

Q ss_pred             HHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           13 EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        13 ~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .||+++|+|..|++.++..++..+....|.+|+
T Consensus         4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   36 (220)
T 2fmy_A            4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKA   36 (220)
T ss_dssp             TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTC
T ss_pred             hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCC
Confidence            579999999999999999999999999999986

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=96.63  E-value=0.00015  Score=40.05  Aligned_cols=32  Identities=16%  Similarity=0.054  Sum_probs=29.8

Q ss_pred             HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ||+++|+|..|++.++..++.......|.+|+
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   32 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGS   32 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTC
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCC
Confidence            68999999999999999999999999999986

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=96.60  E-value=0.0034  Score=37.98  Aligned_cols=37  Identities=11%  Similarity=0.094  Sum_probs=32.7

Q ss_pred             HHHHHHhhcCcccCCCChHHHhhHhhhhhe-eeecCCC
Q psy719            9 KLYEEFLSRVSILVQCGSKKMGIVAKHVTC-AMVEKGE   45 (45)
Q Consensus         9 ~~~~~fL~~V~ilk~L~~~~l~kiad~l~~-~~y~~Ge   45 (45)
                      +...++|+++|+|..|++.++..+++++.. .+|.+|+
T Consensus       333 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~  370 (469)
T 1o7f_A          333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT  370 (469)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTC
T ss_pred             HHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCC
Confidence            456789999999999999999999999985 4898886

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=96.25  E-value=0.0066  Score=40.41  Aligned_cols=38  Identities=13%  Similarity=0.024  Sum_probs=34.7

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .+.....|++|++|++|++.++..||.++..+.|++|+
T Consensus        37 l~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge   74 (999)
T 4f7z_A           37 VDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGI   74 (999)
T ss_dssp             HHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCC
Confidence            34567789999999999999999999999999999996

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=96.19  E-value=0.0064  Score=40.47  Aligned_cols=40  Identities=10%  Similarity=0.061  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhhee-eecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCA-MVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~-~y~~Ge   45 (45)
                      ...+...+||.++|+|++|+..++..+|+++... +|++|+
T Consensus       330 ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGt  370 (999)
T 4f7z_A          330 DDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT  370 (999)
T ss_dssp             HHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTC
T ss_pred             HHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCC
Confidence            4456788999999999999999999999999854 456664

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=95.83  E-value=0.012  Score=38.42  Aligned_cols=38  Identities=11%  Similarity=0.053  Sum_probs=34.1

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhh-eeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVT-CAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~-~~~y~~Ge   45 (45)
                      .+...++|+++|+|..|++.++..|+.++. ...|.+|+
T Consensus        27 ~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe   65 (694)
T 3cf6_E           27 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT   65 (694)
T ss_dssp             HHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTC
T ss_pred             HHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCC
Confidence            445788999999999999999999999998 78999986

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=95.75  E-value=0.0041  Score=36.94  Aligned_cols=34  Identities=12%  Similarity=0.253  Sum_probs=1.0

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .++++++|+|+++++.++..++..++...|.+||
T Consensus       227 ~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge  260 (355)
T 3beh_A          227 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA  260 (355)
T ss_dssp             HC--------------------------------
T ss_pred             chhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence            4589999999999999999999999999999986

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=95.62  E-value=0.005  Score=33.85  Aligned_cols=29  Identities=7%  Similarity=0.041  Sum_probs=27.6

Q ss_pred             cCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           17 RVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        17 ~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++|+|..|++.++..++.......|.+|+
T Consensus        14 ~~~~f~~l~~~~~~~l~~~~~~~~~~~g~   42 (232)
T 2gau_A           14 LRDVWSLLNEEERELLDKEIQPFPCKKAS   42 (232)
T ss_dssp             SHHHHTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             ccHhhhcCCHHHHHHHHhhCeEEEECCCC
Confidence            68999999999999999999999999986

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=93.52  E-value=0.039  Score=29.62  Aligned_cols=28  Identities=4%  Similarity=-0.083  Sum_probs=21.2

Q ss_pred             CcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           18 VSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        18 V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +++.+.|++.++..++..++...|.+|+
T Consensus         1 ~~l~~~l~~~~l~~l~~~~~~~~~~~g~   28 (210)
T 3ryp_A            1 MVLGKPQTDPTLEWFLSHCHIHKYPSKS   28 (210)
T ss_dssp             ------CCCHHHHHHHTTSEEEEECTTC
T ss_pred             CcCCCcCCHHHHHHHHHhcEEEEeCCCC
Confidence            3677889999999999999999999986

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=90.04  E-value=0.15  Score=28.31  Aligned_cols=32  Identities=13%  Similarity=-0.050  Sum_probs=26.8

Q ss_pred             HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      |+.++.-+..|++.++..++.......|.+|+
T Consensus        10 ~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~   41 (250)
T 3e6c_C           10 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGS   41 (250)
T ss_dssp             CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTC
T ss_pred             hhhhccchhhCCHHHHHHHHhhCeEEEECCCC
Confidence            44444445899999999999999999999986

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=83.34  E-value=0.82  Score=24.22  Aligned_cols=22  Identities=9%  Similarity=-0.007  Sum_probs=20.3

Q ss_pred             CChHHHhhHhhhhheeeecCCC
Q psy719           24 CGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        24 L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      |++.++..++..+....|.+|+
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~   22 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKS   22 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTC
T ss_pred             CCHHHHHHHHhhcceEEECCCC
Confidence            6889999999999999999986

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=82.09  E-value=0.46  Score=25.71  Aligned_cols=29  Identities=14%  Similarity=0.052  Sum_probs=18.2

Q ss_pred             cCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           17 RVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        17 ~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +=|++.+.++.+...++.......|.+|+
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~~~~~~g~   31 (213)
T 1o5l_A            3 SDKIHHHHHHMDLKKLLPCGKVIVFRKGE   31 (213)
T ss_dssp             ----------CCGGGGGGGSEEEEECTTC
T ss_pred             ccccchhhccCCHHHHhcccEEEEECCCC
Confidence            45889999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	45
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	98.75
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	98.67
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	98.45
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	98.24
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	98.23
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	98.17
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	97.92
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	97.78
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	97.64
d1zyba2	147	Probable transcription regulator BT4300, N-termina	97.62
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	94.25
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	93.26
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	87.03

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=3.4e-09  Score=54.61  Aligned_cols=34  Identities=38%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++||++||+|++|++.++..||+++++..|++|+
T Consensus         1 ~~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~   34 (132)
T d1ne6a2           1 EEFLSKVSILESLDKWERLTVADALEPVQFEDGQ   34 (132)
T ss_dssp             HHHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTC
T ss_pred             ChhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCC
Confidence            5899999999999999999999999999999996

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=8.9e-09  Score=53.60  Aligned_cols=34  Identities=18%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             HHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           12 EEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        12 ~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++||+++|+|++|++.++.+|+++++...|.+|+
T Consensus         1 e~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge   34 (147)
T d1cx4a2           1 ESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGE   34 (147)
T ss_dssp             HHHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTC
T ss_pred             ChhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCC
Confidence            5899999999999999999999999999999996

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=1.5e-07  Score=48.44  Aligned_cols=41  Identities=17%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .+.++...++|+++|+|++|++.++..|+++++...|++|+
T Consensus         8 ~~~~~~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~   48 (136)
T d1cx4a1           8 DDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGE   48 (136)
T ss_dssp             HHHHHHHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCC
Confidence            46677788999999999999999999999999999999996

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=98.24  E-value=5.7e-07  Score=46.13  Aligned_cols=35  Identities=11%  Similarity=0.232  Sum_probs=33.2

Q ss_pred             HHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           11 YEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        11 ~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ..++|++||+|++|++.++.+|+.++....|.+|+
T Consensus         9 ~~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~   43 (133)
T d1vp6a_           9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA   43 (133)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHCCCccccCCHHHHHHHHHhCEEEEECCCC
Confidence            56899999999999999999999999999999986

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=9.7e-07  Score=44.77  Aligned_cols=41  Identities=10%  Similarity=0.084  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHhhcCcccCCCChHHHhhHhhhhheee-ecCCC
Q psy719            5 IRKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAM-VEKGE   45 (45)
Q Consensus         5 ~~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~-y~~Ge   45 (45)
                      .+..+.+.++|+++|+|++|++..+.+||+++..+. |++|+
T Consensus         2 ~~d~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge   43 (124)
T d1o7fa3           2 VDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT   43 (124)
T ss_dssp             HHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTC
T ss_pred             HHHHHHHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCC
Confidence            466788999999999999999999999999998755 45675

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.17  E-value=2.4e-07  Score=48.18  Aligned_cols=33  Identities=6%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             HHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           13 EFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        13 ~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ++|++||+|++|++..+.+||..+++.+|.+|+
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge   38 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKS   38 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTE
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCC
Confidence            479999999999999999999999999999985

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.92  E-value=9.5e-06  Score=41.85  Aligned_cols=39  Identities=5%  Similarity=0.019  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            7 KRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         7 kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .-.....+|+++|+|++|++.++.+|++++....|.+|+
T Consensus        14 ~~~~l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge   52 (136)
T d1ne6a1          14 TMAALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGE   52 (136)
T ss_dssp             HHHHHHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCC
Confidence            334467899999999999999999999999999999996

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=5.1e-06  Score=44.52  Aligned_cols=38  Identities=3%  Similarity=0.176  Sum_probs=35.2

Q ss_pred             HHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            8 RKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         8 r~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+..+|+++|+|++++...+..|+..+++..|.+|+
T Consensus        63 ~~~~~~~l~~~~~F~~~~~~~l~~l~~~~~~~~~~~g~  100 (193)
T d1q3ea_          63 NFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGD  100 (193)
T ss_dssp             HHHTHHHHHHCHHHHTSCHHHHHHHHTTCEEEEECTTC
T ss_pred             HHHHHHHHhcchHHHhhhHHHHHHHHHHHHHHhhccCc
Confidence            45678899999999999999999999999999999996

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=4.4e-05  Score=39.68  Aligned_cols=40  Identities=13%  Similarity=0.030  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719            6 RKRKLYEEFLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus         6 ~kr~~~~~fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      ...+....+|+++|+|+.+++..+.+|+..+....|.+|+
T Consensus        17 ~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge   56 (155)
T d1o7fa2          17 EDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGI   56 (155)
T ss_dssp             HHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCC
Confidence            4456678899999999999999999999999999999986

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.62  E-value=2.9e-05  Score=39.83  Aligned_cols=36  Identities=11%  Similarity=0.115  Sum_probs=31.1

Q ss_pred             HHHHHhhcCcccCCCChHHHhhHhhhhh--eeeecCCC
Q psy719           10 LYEEFLSRVSILVQCGSKKMGIVAKHVT--CAMVEKGE   45 (45)
Q Consensus        10 ~~~~fL~~V~ilk~L~~~~l~kiad~l~--~~~y~~Ge   45 (45)
                      ...++|+++|+|++|++.++..|++.+.  ...|++|+
T Consensus         3 ~~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~   40 (147)
T d1zyba2           3 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGE   40 (147)
T ss_dssp             HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTC
T ss_pred             hHHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCC
Confidence            3567899999999999999999999865  46799886

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=94.25  E-value=0.013  Score=29.24  Aligned_cols=27  Identities=7%  Similarity=0.096  Sum_probs=25.1

Q ss_pred             cccCCCChHHHhhHhhhhheeeecCCC
Q psy719           19 SILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        19 ~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      .+|+.|++.++..++..+++..|++|+
T Consensus         7 elf~~l~~~~~~~l~~~~~~~~~~~g~   33 (142)
T d2gaua2           7 DVWSLLNEEERELLDKEIQPFPCKKAS   33 (142)
T ss_dssp             HHHTTCCHHHHHHHHHHCEEEEECTTC
T ss_pred             HHHccCCHHHHHHHHhcCEEEEECCCC
Confidence            368999999999999999999999996

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.26  E-value=0.0038  Score=31.27  Aligned_cols=29  Identities=17%  Similarity=0.063  Sum_probs=27.3

Q ss_pred             cCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           17 RVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        17 ~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      +.+||..|++.++..+...++..+|++|+
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~   31 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGS   31 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTC
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCc
Confidence            57899999999999999999999999996

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=87.03  E-value=0.11  Score=25.65  Aligned_cols=32  Identities=13%  Similarity=-0.050  Sum_probs=25.1

Q ss_pred             HhhcCcccCCCChHHHhhHhhhhheeeecCCC
Q psy719           14 FLSRVSILVQCGSKKMGIVAKHVTCAMVEKGE   45 (45)
Q Consensus        14 fL~~V~ilk~L~~~~l~kiad~l~~~~y~~Ge   45 (45)
                      |+..+.-..-+|..++.+++.......|++|+
T Consensus         2 ~~~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~   33 (139)
T d3e5ua2           2 FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGS   33 (139)
T ss_dssp             CCCCSSSBSCSCCGGGGGGGGGSEEEEECTTC
T ss_pred             chhhcCCCCCCCHHHHHHHHHhCEEEEECCCC
Confidence            34444445557889999999999999999996