Psyllid ID: psy7321

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41

MDISTLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKMADYLVN

ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcc

ccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcc

MDISTLKTQLAALSsqagshkdqADKYRSILELILknqdtttcTECLNLFVEAIVNENVSLVISRQILTDVsthlvsqpdevakpvshftldkvqprvISFEEQVASIRQHLALIYEREENWRDAANVLVgipletgqkqysvDYKLQTYMKIARLylededpvqAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYselsykpiIDEAERITALKSALICTILASAGQQRSRMLATLfkdercqhlpaysILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASklynnisfpeLGALLQISAAKAEKIASHMICEgrmngyvdqidsivhfetreilpsWDKQIESLCYRIDHIMEQIETVQPEWLSKKMADYLVN

MDISTLKTQLAAlssqagshkdqADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGipletgqkqysvdYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQaetkdetlqVHYKVCYARVLDYRRKFIEAAqryselsykpIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIetvqpewlskkmadylvn

**************************YRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKK*******

***STLK**********************ILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSR*******DERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKMADY***

************************DKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKMADYLVN

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		408	2.2.26 [Sep-21-2011]
O88544		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.731	1e-173
Q68FS2		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.731	1e-173
A7Y521		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.726	1e-173
Q4R5E6		406	COP9 signalosome complex	N/A	N/A	0.975	0.980	0.726	1e-173
Q9BT78		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.726	1e-173
Q5R648		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.724	1e-172
Q3SZA0		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.724	1e-172
Q6P0H6		406	COP9 signalosome complex	yes	N/A	0.975	0.980	0.726	1e-172
Q9V345		407	COP9 signalosome complex	yes	N/A	0.965	0.968	0.726	1e-169
Q54B82		393	COP9 signalosome complex	yes	N/A	0.958	0.994	0.466	1e-102

>sp\|O88544\|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1 SV=1	Back alignment and function desciption

 Score =  609 bits (1570), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/399 (73%), Positives = 340/399 (85%), Gaps = 1/399 (0%)

Query: 4   STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
           + ++  LA L + +GSHKD A KYR ILE  ++   T    E L  FVEA+VNENVSLVI
Sbjct: 3   AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGTEQL-EALKAFVEAMVNENVSLVI 61

Query: 64  SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
           SRQ+LTD  THL + PD  AK V HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct: 62  SRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121

Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
           +AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct: 122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181

Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
            LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct: 182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241

Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
           RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct: 242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301

Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
           RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct: 302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361

Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
           ETRE LP+WDKQI+SLC+++++++E+I    PEW ++ M
Sbjct: 362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400

Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively.
Mus musculus (taxid: 10090)

>sp\|Q68FS2\|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4 PE=2 SV=1	Back alignment and function description

>sp\|A7Y521\|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1	Back alignment and function description

>sp\|Q4R5E6\|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4 PE=2 SV=1	Back alignment and function description

>sp\|Q9BT78\|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1	Back alignment and function description

>sp\|Q5R648\|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2 SV=1	Back alignment and function description

>sp\|Q3SZA0\|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1	Back alignment and function description

>sp\|Q6P0H6\|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2 SV=1	Back alignment and function description

>sp\|Q9V345\|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster GN=CSN4 PE=1 SV=1	Back alignment and function description

>sp\|Q54B82\|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum GN=csn4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		408
157124664		409	cop9 complex subunit [Aedes aegypti] gi\|	0.975	0.973	0.764	0.0
242019704		408	COP9 signalosome complex subunit, putati	0.990	0.990	0.745	1e-180
307172336		411	COP9 signalosome complex subunit 4 [Camp	0.992	0.985	0.747	1e-180
170029512		410	COP9 signalosome complex subunit 4 [Cule	0.973	0.968	0.753	1e-180
427789725		407	Putative cop9 signalosome subunit csn4 [	0.992	0.995	0.743	1e-180
345480212		412	PREDICTED: COP9 signalosome complex subu	0.990	0.980	0.744	1e-178
322792340		413	hypothetical protein SINV_06727 [Solenop	0.992	0.980	0.743	1e-178
312378723		408	hypothetical protein AND_09642 [Anophele	0.975	0.975	0.742	1e-178
91088687		410	PREDICTED: similar to cop9 complex subun	0.985	0.980	0.741	1e-178
158298783		412	AGAP009834-PA [Anopheles gambiae str. PE	0.982	0.973	0.742	1e-177

>gi\|157124664\|ref\|XP_001654142.1\| cop9 complex subunit [Aedes aegypti] gi\|108882771\|gb\|EAT46996.1\| AAEL001874-PA [Aedes aegypti]	Back alignment and taxonomy information

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/399 (76%), Positives = 353/399 (88%), Gaps = 1/399 (0%)

Query: 4   STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
           S L+ QLAAL++ +G HK+QADKYR +L+ IL N       + L LF+EAIVNE+VSLVI
Sbjct: 6   SALRNQLAALTNFSGIHKEQADKYRGLLDQILLNTGNE-LVDTLKLFIEAIVNEHVSLVI 64

Query: 64  SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
           SRQIL+DVSTHL   PD+++K VSHFTLDKVQPRVISFEEQVASIRQHLA IYER +NW+
Sbjct: 65  SRQILSDVSTHLAKLPDDISKAVSHFTLDKVQPRVISFEEQVASIRQHLAGIYERNQNWK 124

Query: 124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
           +AANVL GIPLETGQK YS+DYKL+TY+KIARLYLEDEDPVQAEAFINRAS+LQA+TKDE
Sbjct: 125 EAANVLGGIPLETGQKPYSLDYKLETYLKIARLYLEDEDPVQAEAFINRASILQADTKDE 184

Query: 184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
            LQ+ YKVCYARVLDYRRKFIEAAQRY+ELSY+ I+DE ER+TALK ALICT+LASAGQQ
Sbjct: 185 KLQILYKVCYARVLDYRRKFIEAAQRYNELSYRTIVDEGERMTALKKALICTVLASAGQQ 244

Query: 244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
           RSRMLATLFKDERCQHLPAYSILEKMYLDRIIR+SELQDF ALL+ HQKA TVDGS+IL+
Sbjct: 245 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRRSELQDFEALLQAHQKASTVDGSTILD 304

Query: 304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
           RAV EHNLLSASKLYNNI+F ELG+LL+I   KAE+IAS MI EGRMNGY+DQID +VHF
Sbjct: 305 RAVFEHNLLSASKLYNNITFDELGSLLEIPPNKAERIASQMITEGRMNGYIDQIDGVVHF 364

Query: 364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
           ETREILP WDKQI+SLCY+++ ++E+I   +PEW++K M
Sbjct: 365 ETREILPQWDKQIQSLCYQVNGLIEKISAAEPEWITKVM 403

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|242019704\|ref\|XP_002430299.1\| COP9 signalosome complex subunit, putative [Pediculus humanus corporis] gi\|212515414\|gb\|EEB17561.1\| COP9 signalosome complex subunit, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307172336\|gb\|EFN63824.1\| COP9 signalosome complex subunit 4 [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|170029512\|ref\|XP_001842636.1\| COP9 signalosome complex subunit 4 [Culex quinquefasciatus] gi\|167863220\|gb\|EDS26603.1\| COP9 signalosome complex subunit 4 [Culex quinquefasciatus]	Back alignment and taxonomy information

>gi\|427789725\|gb\|JAA60314.1\| Putative cop9 signalosome subunit csn4 [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|345480212\|ref\|XP_001607868.2\| PREDICTED: COP9 signalosome complex subunit 4-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|322792340\|gb\|EFZ16324.1\| hypothetical protein SINV_06727 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|312378723\|gb\|EFR25219.1\| hypothetical protein AND_09642 [Anopheles darlingi]	Back alignment and taxonomy information

>gi\|91088687\|ref\|XP_974969.1\| PREDICTED: similar to cop9 complex subunit [Tribolium castaneum] gi\|270011671\|gb\|EFA08119.1\| hypothetical protein TcasGA2_TC005723 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|158298783\|ref\|XP_318948.3\| AGAP009834-PA [Anopheles gambiae str. PEST] gi\|157014051\|gb\|EAA13836.3\| AGAP009834-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		408
MGI\|MGI:1349414		406	Cops4 "COP9 (constitutive phot	0.975	0.980	0.731	4.5e-153
UNIPROTKB\|Q5ZJV0		411	COPS4 "Uncharacterized protein	0.975	0.968	0.729	5.8e-153
UNIPROTKB\|E2RT55		406	COPS4 "Uncharacterized protein	0.975	0.980	0.726	2e-152
UNIPROTKB\|Q9BT78		406	COPS4 "COP9 signalosome comple	0.975	0.980	0.726	2e-152
UNIPROTKB\|A7Y521		406	COPS4 "COP9 signalosome comple	0.975	0.980	0.726	2e-152
RGD\|1302952		406	Cops4 "COP9 signalosome subuni	0.975	0.980	0.731	2.5e-152
UNIPROTKB\|Q3SZA0		406	COPS4 "COP9 signalosome comple	0.975	0.980	0.724	4.1e-152
ZFIN\|ZDB-GENE-030131-4317		406	cops4 "COP9 constitutive photo	0.970	0.975	0.730	5.2e-152
FB\|FBgn0027054		407	CSN4 "COP9 complex homolog sub	0.968	0.970	0.728	3e-149
UNIPROTKB\|D6RAX7		420	COPS4 "COP9 signalosome comple	0.884	0.859	0.751	1e-139

MGI\|MGI:1349414 Cops4 "COP9 (constitutive photomorphogenic) homolog, subunit 4 (Arabidopsis thaliana)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

 Score = 1493 (530.6 bits), Expect = 4.5e-153, P = 4.5e-153
 Identities = 292/399 (73%), Positives = 340/399 (85%)

Query:     4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVI 63
             + ++  LA L + +GSHKD A KYR ILE  ++   T    E L  FVEA+VNENVSLVI
Sbjct:     3 AAVRQDLAQLMNSSGSHKDLAGKYRQILEKAIQLSGTEQL-EALKAFVEAMVNENVSLVI 61

Query:    64 SRQILTDVSTHLVSQPDEVAKPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWR 123
             SRQ+LTD  THL + PD  AK V HFTL+K+QPRVISFEEQVASIRQHLA IYE+EE+WR
Sbjct:    62 SRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWR 121

Query:   124 DAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQAETKDE 183
             +AA VLVGIPLETGQKQY+VDYKL+TY+KIARLYLED+DPVQAEA+INRASLLQ E+ +E
Sbjct:   122 NAAQVLVGIPLETGQKQYNVDYKLETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNE 181

Query:   184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ 243
              LQ+HYKVCYARVLDYRRKFIEAAQRY+ELSYK I+ E+ER+ ALK AL CTILASAGQQ
Sbjct:   182 QLQIHYKVCYARVLDYRRKFIEAAQRYNELSYKTIVHESERLEALKHALHCTILASAGQQ 241

Query:   244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILE 303
             RSRMLATLFKDERCQ L AY ILEKMYLDRIIR ++LQ+FAA+L PHQKA T DGSSIL+
Sbjct:   242 RSRMLATLFKDERCQQLAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILD 301

Query:   304 RAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
             RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID IVHF
Sbjct:   302 RAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHF 361

Query:   364 ETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSKKM 402
             ETRE LP+WDKQI+SLC+++++++E+I    PEW ++ M
Sbjct:   362 ETREALPTWDKQIQSLCFQVNNLLEKISQTAPEWTAQAM 400

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008180 "signalosome" evidence=ISO;IDA

GO:0010388 "cullin deneddylation" evidence=ISO

UNIPROTKB\|Q5ZJV0 COPS4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RT55 COPS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9BT78 COPS4 "COP9 signalosome complex subunit 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A7Y521 COPS4 "COP9 signalosome complex subunit 4" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1302952 Cops4 "COP9 signalosome subunit 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SZA0 COPS4 "COP9 signalosome complex subunit 4" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-4317 cops4 "COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0027054 CSN4 "COP9 complex homolog subunit 4" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|D6RAX7 COPS4 "COP9 signalosome complex subunit 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C467	CSN4_EMENI	No assigned EC number	0.3937	0.8357	0.8357	yes	N/A
A7Y521	CSN4_PIG	No assigned EC number	0.7268	0.9754	0.9802	yes	N/A
Q54B82	CSN4_DICDI	No assigned EC number	0.4661	0.9583	0.9949	yes	N/A
Q9N359	CSN4_CAEEL	No assigned EC number	0.3684	0.8627	0.8543	yes	N/A
Q9V345	CSN4_DROME	No assigned EC number	0.7265	0.9656	0.9680	yes	N/A
O88544	CSN4_MOUSE	No assigned EC number	0.7318	0.9754	0.9802	yes	N/A
Q3SZA0	CSN4_BOVIN	No assigned EC number	0.7243	0.9754	0.9802	yes	N/A
Q8L5U0	CSN4_ARATH	No assigned EC number	0.4751	0.9093	0.9345	yes	N/A
Q68FS2	CSN4_RAT	No assigned EC number	0.7318	0.9754	0.9802	yes	N/A
Q9BT78	CSN4_HUMAN	No assigned EC number	0.7268	0.9754	0.9802	yes	N/A
Q5R648	CSN4_PONAB	No assigned EC number	0.7243	0.9754	0.9802	yes	N/A
Q6P0H6	CSN4_DANRE	No assigned EC number	0.7268	0.9754	0.9802	yes	N/A
Q4R5E6	CSN4_MACFA	No assigned EC number	0.7268	0.9754	0.9802	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		408
pfam01399		100	pfam01399, PCI, PCI domain	2e-17
COG5071		439	COG5071, RPN5, 26S proteasome regulatory complex c	4e-12
smart00753		88	smart00753, PAM, PCI/PINT associated module	9e-11
smart00088		88	smart00088, PINT, motif in proteasome subunits, In	9e-11
COG4630		493	COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur	0.004

>gnl\|CDD\|216479 pfam01399, PCI, PCI domain	Back alignment and domain information

 Score = 76.9 bits (190), Expect = 2e-17
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 268 KMYLDRIIRKSELQDFAALLKPHQ----KAITVDGSSILERAVTEHNLLSASKLYNNISF 323
              L R     +L DF  +L  ++         +    L R + E NL   +K Y++IS 
Sbjct: 1   YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60

Query: 324 PELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHF 363
            +L  LL +S  + EKI S +I +GR+ G +DQ++ IV F
Sbjct: 61  SDLAKLLGLSVDEVEKILSKLIRDGRIRGKIDQVNGIVVF 100

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). Length = 100

>gnl\|CDD\|227403 COG5071, RPN5, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|214803 smart00753, PAM, PCI/PINT associated module	Back alignment and domain information

>gnl\|CDD\|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	Back alignment and domain information

>gnl\|CDD\|226977 COG4630, XdhA, Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		408
KOG1497\|consensus		399		100.0
KOG1498\|consensus		439		100.0
COG5071		439	RPN5 26S proteasome regulatory complex component [	100.0
KOG0687\|consensus		393		100.0
KOG1463\|consensus		411		99.97
COG5187		412	RPN7 26S proteasome regulatory complex component,	99.96
KOG1464\|consensus		440		99.91
COG5159		421	RPN6 26S proteasome regulatory complex component [	99.91
KOG2581\|consensus		493		99.83
PF01399		105	PCI: PCI domain; InterPro: IPR000717 A homology do	99.64
PF10602		177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	99.63
KOG2908\|consensus		380		99.62
KOG0686\|consensus		466		99.62
smart00753		88	PAM PCI/PINT associated module.	99.38
smart00088		88	PINT motif in proteasome subunits, Int-6, Nip-1 an	99.38
KOG2582\|consensus		422		99.08
KOG1076\|consensus		843		98.46
KOG2753\|consensus		378		98.02
KOG2688\|consensus		394		97.64
KOG2758\|consensus		432		97.6
KOG2072\|consensus		988		97.23
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.04
COG5600		413	Transcription-associated recombination protein [DN	96.87
PF10255		404	Paf67: RNA polymerase I-associated factor PAF67; I	96.63
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.55
PF10075		143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	96.15
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	94.75
KOG2076\|consensus		895		94.52
PF09012		69	FeoC: FeoC like transcriptional regulator; InterPr	94.08
cd00189		100	TPR Tetratricopeptide repeat domain; typically con	93.8
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	93.33
PF04348		536	LppC: LppC putative lipoprotein; InterPro: IPR0074	92.08
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.02
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	91.87
PF09976		145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	91.75
PF03399		204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	91.72
PF09756		188	DDRGK: DDRGK domain; InterPro: IPR019153 This is a	91.48
PF08784		102	RPA_C: Replication protein A C terminal; InterPro:	91.01
COG3063		250	PilF Tfp pilus assembly protein PilF [Cell motilit	90.84
COG3107		604	LppC Putative lipoprotein [General function predic	89.75
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	88.12
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	88.12
KOG1840\|consensus		508		88.01
PF10345		608	Cohesin_load: Cohesin loading factor; InterPro: IP	87.91
PRK11788		389	tetratricopeptide repeat protein; Provisional	87.71
KOG2300\|consensus		629		87.7
PRK11788		389	tetratricopeptide repeat protein; Provisional	87.27
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	86.69
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	85.97
TIGR02521		234	type_IV_pilW type IV pilus biogenesis/stability pr	85.93
PRK02603		172	photosystem I assembly protein Ycf3; Provisional	85.6
PF12802		62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	85.58
CHL00033		168	ycf3 photosystem I assembly protein Ycf3	85.29
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	85.14
KOG1585\|consensus		308		84.87
KOG3081\|consensus		299		84.85
PRK15431		78	ferrous iron transport protein FeoC; Provisional	84.31
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	84.24
PF02082		83	Rrf2: Transcriptional regulator; InterPro: IPR0009	84.16
TIGR02552		135	LcrH_SycD type III secretion low calcium response	83.94
TIGR03302		235	OM_YfiO outer membrane assembly lipoprotein YfiO.	83.83
KOG2003\|consensus		840		83.31
PF13412		48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	83.28
KOG2003\|consensus		840		81.18
PF04733		290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	81.14
KOG1840\|consensus		508		80.89

>KOG1497\|consensus	Back alignment and domain information

Probab=100.00  E-value=5.5e-87  Score=633.05  Aligned_cols=396  Identities=65%  Similarity=1.000  Sum_probs=383.7

Q ss_pred             HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhhccchhhchHHHHHHHHHHhcCCCCcch
Q psy7321           4 STLKTQLAALSSQAGSHKDQADKYRSILELILKNQDTTTCTECLNLFVEAIVNENVSLVISRQILTDVSTHLVSQPDEVA   83 (408)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~e~v~~~~~r~iv~~~~~~l~~l~~~~~   83 (408)
                      +.+++++.....+.|+||++.++|+.+|+..++++.. ++.+.+|.|+++++++++++|+|||+++.+...|+.+|++.+
T Consensus         2 ~~~r~eev~~~~~~g~hk~~~~qyr~~l~~~lt~~~~-el~e~~k~~id~~~~~~vslvvsrqllsl~~~~l~~l~~e~~   80 (399)
T KOG1497|consen    2 AAERSEEVVLIFAEGDHKDQAEQYRQLLAKVLTNNGM-ELLEALKRFIDAIVNENVSLVVSRQLLSLFDVELSILEDELR   80 (399)
T ss_pred             hhHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHcCCchhhhHHHHHHHHHHHhccCCHHHH
Confidence            4567777777777889999999999999999988765 489999999999999999999999999999999999999999


Q ss_pred             hchHHHHHhhhcCccchHHHHHHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCCh
Q psy7321          84 KPVSHFTLDKVQPRVISFEEQVASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDP  163 (408)
Q Consensus        84 ~~~~~~~L~~i~~~~i~~E~e~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~  163 (408)
                      |+...++|..|+|+.|+||+|++.+|.+||.+||++++|+.||.+|.+|+.+||.+..+.+.|+..|+++.|+||+++|.
T Consensus        81 Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~  160 (399)
T KOG1497|consen   81 KEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDK  160 (399)
T ss_pred             HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCcc
Q psy7321         164 VQAEAFINRASLLQAETKDETLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIIDEAERITALKSALICTILASAGQQ  243 (408)
Q Consensus       164 ~~A~~~i~Ka~~~~~~~~~~~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~~~e~~~~L~~av~~~ILa~~~~~  243 (408)
                      +.|+.|+||++.++.+..++++++.|++|+||++|++|+|+|||++||+++.+..+++.++.++|+.++.|++||.+||+
T Consensus       161 veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~~CtlLA~~gpq  240 (399)
T KOG1497|consen  161 VEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQRKIVDESERLEALKKALQCTLLASAGPQ  240 (399)
T ss_pred             HHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHhheeecCCChH
Confidence            99999999999888777899999999999999999999999999999999998888999999999999999999999999


Q ss_pred             hhHHHHhhhcCcccCCChhHHHHHHHHHHhhcCcchHHHHHHHhchhhhhhhcchhhhHHHHHHHHHHHHHHhccccCCh
Q psy7321         244 RSRMLATLFKDERCQHLPAYSILEKMYLDRIIRKSELQDFAALLKPHQKAITVDGSSILERAVTEHNLLSASKLYNNISF  323 (408)
Q Consensus       244 rs~ll~~l~~d~~~~~lp~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ViEhNi~~isk~Ys~Itl  323 (408)
                      |+|+|+.+++|||++++|.|..+.|||++++|+.+++++|...|.|||++.+.||+++|.++++||||+.+|++|++|||
T Consensus       241 rsr~Latlfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~pHQka~~~dgssil~ra~~EhNlls~Skly~nisf  320 (399)
T KOG1497|consen  241 RSRMLATLFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQPHQKAHTMDGSSILDRAVIEHNLLSASKLYNNISF  320 (399)
T ss_pred             HHHHHHHHhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcchhhhcccCcchhhhhHHHHHhHHHHHHHHHhccH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCCchhhHHHHHHHHHHHHHHHHHHHHhhChhhhhh
Q psy7321         324 PELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETREILPSWDKQIESLCYRIDHIMEQIETVQPEWLSK  400 (408)
Q Consensus       324 ~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~~l~~W~~~I~~l~~~v~~v~~~i~~~~p~~~~~  400 (408)
                      +.||++|++|++++|+++++||.+||++|.|||.+|+|+|++++.++.||.+|+++|+.||++.+.|+..+|+|..-
T Consensus       321 ~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l~~wdkqi~sl~~qvNki~~~i~~~~s~~~~~  397 (399)
T KOG1497|consen  321 EELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREELPQWDKQIQSLCNQVNKILDKISHYGSEWAEF  397 (399)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhhhhhhhHHHHHHHHHHHHHHHHHHHhCcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999753

>KOG1498\|consensus	Back alignment and domain information

>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0687\|consensus	Back alignment and domain information

>KOG1463\|consensus	Back alignment and domain information

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1464\|consensus	Back alignment and domain information

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2581\|consensus	Back alignment and domain information

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins	Back alignment and domain information

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome	Back alignment and domain information

>KOG2908\|consensus	Back alignment and domain information

>KOG0686\|consensus	Back alignment and domain information

>smart00753 PAM PCI/PINT associated module	Back alignment and domain information

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	Back alignment and domain information

>KOG2582\|consensus	Back alignment and domain information

>KOG1076\|consensus	Back alignment and domain information

>KOG2753\|consensus	Back alignment and domain information

>KOG2688\|consensus	Back alignment and domain information

>KOG2758\|consensus	Back alignment and domain information

>KOG2072\|consensus	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]	Back alignment and domain information

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG2076\|consensus	Back alignment and domain information

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif	Back alignment and domain information

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function	Back alignment and domain information

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]	Back alignment and domain information

>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues	Back alignment and domain information

>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A)	Back alignment and domain information

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]	Back alignment and domain information

>COG3107 LppC Putative lipoprotein [General function prediction only]	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>KOG1840\|consensus	Back alignment and domain information

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>KOG2300\|consensus	Back alignment and domain information

>PRK11788 tetratricopeptide repeat protein; Provisional	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW	Back alignment and domain information

>PRK02603 photosystem I assembly protein Ycf3; Provisional	Back alignment and domain information

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B	Back alignment and domain information

>CHL00033 ycf3 photosystem I assembly protein Ycf3	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>KOG1585\|consensus	Back alignment and domain information

>KOG3081\|consensus	Back alignment and domain information

>PRK15431 ferrous iron transport protein FeoC; Provisional	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp	Back alignment and domain information

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD	Back alignment and domain information

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO	Back alignment and domain information

>KOG2003\|consensus	Back alignment and domain information

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A	Back alignment and domain information

>KOG2003\|consensus	Back alignment and domain information

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1840\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		408
1ufm_A		84	Solution Structure Of The Pci Domain Length = 84		7e-26

>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain Length = 84

Back alignment and structure

Iteration: 1

Score = 114 bits (286), Expect = 7e-26, Method: Composition-based stats. Identities = 56/67 (83%), Positives = 61/67 (91%) Query: 301 ILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSI 360 IL+RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG++DQID I Sbjct: 11 ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70 Query: 361 VHFETRE 367 VHFETRE Sbjct: 71 VHFETRE 77

PyMOL of 1ufm

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		408
1ufm_A		84	COP9 complex subunit 4; helix-turn-helix, structur	1e-25
3txn_A		394	26S proteasome regulatory complex subunit P42B; PC	7e-24
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47 Length = 84	Back alignment and structure

 Score = 98.3 bits (245), Expect = 1e-25
 Identities = 59/75 (78%), Positives = 66/75 (88%)

Query: 293 AITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352
           + +  GSSIL+RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG
Sbjct: 3   SGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNG 62

Query: 353 YVDQIDSIVHFETRE 367
           ++DQID IVHFETRE
Sbjct: 63  FIDQIDGIVHFETRE 77

PyMOL of 1ufm

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A Length = 394	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		408
4b4t_P		445	26S proteasome regulatory subunit RPN5; hydrolase,	100.0
3txn_A		394	26S proteasome regulatory complex subunit P42B; PC	100.0
4b4t_R		429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	100.0
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	99.97
4b4t_S		523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	99.93
4b4t_O		393	26S proteasome regulatory subunit RPN9; hydrolase,	99.91
1ufm_A		84	COP9 complex subunit 4; helix-turn-helix, structur	99.84
3t5x_A		203	PCI domain-containing protein 2; PCI, mRNA nuclear	99.6
3t5v_B		455	Nuclear mRNA export protein THP1; PCI, mRNA nuclea	99.44
4b0z_A		229	RPN12, 26S proteasome regulatory subunit RPN12; pr	98.45
3chm_A		169	COP9 signalosome complex subunit 7; heat/ARM repea	98.04
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	97.03
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	96.99
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	96.4
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	96.26
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	96.18
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	96.11
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	96.1
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.09
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	95.94
1elr_A		131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.88
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	95.86
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	95.78
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.75
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	95.42
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	95.28
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	95.2
2dba_A		148	Smooth muscle cell associated protein-1, isoform 2	95.15
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	95.12
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.07
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	95.03
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	95.02
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	94.99
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	94.86
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	94.67
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	94.57
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	94.52
2xev_A		129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.38
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	94.27
1elw_A		118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.08
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	93.99
2vyi_A		131	SGTA protein; chaperone, TPR repeat, phosphoprotei	93.99
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	93.98
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	93.91
3sz7_A		164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	93.8
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	93.69
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	93.69
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	93.51
2lni_A		133	Stress-induced-phosphoprotein 1; structural genomi	93.38
3upv_A		126	Heat shock protein STI1; TPR-fold, adaptor protein	93.36
1a17_A		166	Serine/threonine protein phosphatase 5; hydrolase,	93.25
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	93.23
3mv2_B		310	Coatomer subunit epsilon; vesicular membrane coat	93.21
3vtx_A		184	MAMA; tetratricopeptide repeats (TPR) containing p	93.13
2fbn_A		198	70 kDa peptidylprolyl isomerase, putative; sulfur	92.87
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	92.84
1na0_A		125	Designed protein CTPR3; de novo protein; HET: IPT;	92.55
1hh8_A		213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	92.53
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	92.45
4i17_A		228	Hypothetical protein; TPR repeats protein, structu	92.26
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	92.2
3q49_B		137	STIP1 homology and U box-containing protein 1; E3	92.15
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	91.9
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	91.85
3rkv_A		162	Putative peptidylprolyl isomerase; structural geno	91.75
1wi9_A		72	Protein C20ORF116 homolog; helix-turn-helix motif,	91.7
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	91.56
2l6j_A		111	TPR repeat-containing protein associated with HSP;	91.44
1rz4_A		226	Eukaryotic translation initiation factor 3 subuni;	91.4
2xcb_A		142	PCRH, regulatory protein PCRH; protein transport,	91.26
1hxi_A		121	PEX5, peroxisome targeting signal 1 receptor PEX5;	91.11
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	91.1
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	91.1
2kck_A		112	TPR repeat; tetratricopeptide repeat, structural g	91.1
3qky_A		261	Outer membrane assembly lipoprotein YFIO; membrane	91.06
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	90.93
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	90.92
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	90.9
2fo7_A		136	Synthetic consensus TPR protein; tetratricopeptide	90.88
2fo7_A		136	Synthetic consensus TPR protein; tetratricopeptide	90.88
2vgx_A		148	Chaperone SYCD; alternative dimer assembly, tetrat	90.71
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	90.57
3gyz_A		151	Chaperone protein IPGC; asymmetric homodimer, tetr	89.92
4f3v_A		282	ESX-1 secretion system protein ECCA1; tetratricope	89.89
1a17_A		166	Serine/threonine protein phosphatase 5; hydrolase,	89.87
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	89.83
3u4t_A		272	TPR repeat-containing protein; structural genomics	89.6
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	89.37
3u4t_A		272	TPR repeat-containing protein; structural genomics	89.29
1qgp_A		77	Protein (double stranded RNA adenosine deaminase);	89.17
1p5q_A		336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	89.15
1ihg_A		370	Cyclophilin 40; ppiase immunophilin tetratricopept	89.04
1hh8_A		213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	89.02
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	89.01
1xnf_A		275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	88.64
4i17_A		228	Hypothetical protein; TPR repeats protein, structu	88.57
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	88.54
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	88.47
2e2e_A		177	Formate-dependent nitrite reductase complex NRFG;	88.45
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	88.4
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	88.33
4b4t_T		274	26S proteasome regulatory subunit RPN12; hydrolase	88.26
3mkr_A		291	Coatomer subunit epsilon; tetratricopeptide repeat	88.15
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	88.1
1xn7_A		78	Hypothetical protein YHGG; alpha+beta, GFT structu	87.64
2gw1_A		514	Mitochondrial precursor proteins import receptor;	87.37
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	87.34
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	86.96
1elr_A		131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	86.82
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	86.7
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	86.32
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	86.3
2yhc_A		225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	86.28
2yhc_A		225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	86.15
3vtx_A		184	MAMA; tetratricopeptide repeats (TPR) containing p	86.15
3ma5_A		100	Tetratricopeptide repeat domain protein; NESG, str	85.88
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	85.8
1kt0_A		457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	85.73
2c2l_A		281	CHIP, carboxy terminus of HSP70-interacting protei	85.39
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	85.38
2xev_A		129	YBGF; tetratricopeptide, alpha-helical, metal bind	85.23
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	85.2
3k9i_A		117	BH0479 protein; putative protein binding protein,	85.19
2k02_A		87	Ferrous iron transport protein C; FEOC, iron-sulfu	85.13
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	85.04
2kat_A		115	Uncharacterized protein; NESG, structure, structur	85.01
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	84.79
3urz_A		208	Uncharacterized protein; tetratricopeptide repeats	84.06
1qbj_A		81	Protein (double-stranded RNA specific adenosine D	83.91
2pl2_A		217	Hypothetical conserved protein TTC0263; TPR, prote	83.86
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	83.75
2gw1_A		514	Mitochondrial precursor proteins import receptor;	83.67
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	83.54
1ub9_A		100	Hypothetical protein PH1061; helix-turn-helix moti	83.23
1xnf_A		275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	83.21
1sfx_A		109	Conserved hypothetical protein AF2008; structural	83.02
1p5q_A		336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	82.84
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	82.04
2vsy_A		568	XCC0866; transferase, glycosyl transferase, GT-B,	81.71
4abn_A		474	Tetratricopeptide repeat protein 5; P53 cofactor,	81.09
3sz7_A		164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	81.06
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	80.93
4gyw_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	80.78
4abn_A		474	Tetratricopeptide repeat protein 5; P53 cofactor,	80.77
4b4t_P		445	26S proteasome regulatory subunit RPN5; hydrolase,	80.5
2kck_A		112	TPR repeat; tetratricopeptide repeat, structural g	80.39

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=100.00  E-value=2.4e-66  Score=534.11  Aligned_cols=351  Identities=22%  Similarity=0.305  Sum_probs=289.2

Q ss_pred             hHHHHHHHH--------HHhhccchhhchHH---------HHHHHHHHhcCCCCc--chhchHHHHHhhhcCccchHHHH
Q psy7321          44 TECLNLFVE--------AIVNENVSLVISRQ---------ILTDVSTHLVSQPDE--VAKPVSHFTLDKVQPRVISFEEQ  104 (408)
Q Consensus        44 ~~~l~~~~~--------~~~~e~v~~~~~r~---------iv~~~~~~l~~l~~~--~~~~~~~~~L~~i~~~~i~~E~e  104 (408)
                      ..-++++++        ..+++++.++++|+         ||+.+++++++.|+.  ..+..++++|+++++|+||||+|
T Consensus        56 ~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~e  135 (445)
T 4b4t_P           56 KEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVE  135 (445)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHH
Confidence            444666665        45678888888865         999999999988853  56889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHhcCccccccccCCchhHHHHHHHHHHHhhhcCChHHHHHHHHHhccccc-cCCcH
Q psy7321         105 VASIRQHLALIYEREENWRDAANVLVGIPLETGQKQYSVDYKLQTYMKIARLYLEDEDPVQAEAFINRASLLQA-ETKDE  183 (408)
Q Consensus       105 ~a~l~~~LA~~~e~~gd~~eAa~~L~~i~~Et~~~~~~~~~Kle~~L~i~RL~L~~~D~~~A~~~i~Ka~~~~~-~~~~~  183 (408)
                      |+|++..||++|++.|+|.+|+++|+++++|| ++.++..+|++++++|+|+|++.+||++|+++++|++.... ..+++
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~  214 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVET-YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE  214 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence            99999999999999999999999999999999 88999999999999999999999999999999999986443 55789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHhCCCCcchhHHHHhhhcCcccCCCh
Q psy7321         184 TLQVHYKVCYARVLDYRRKFIEAAQRYSELSYKPIID--EAERITALKSALICTILASAGQQRSRMLATLFKDERCQHLP  261 (408)
Q Consensus       184 ~lk~~y~~~~a~i~~~~r~f~eAa~~y~e~~~t~~i~--~~e~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~lp  261 (408)
                      +++++|+.|+|++++++++|++||++|+++|.++.+.  +..+..+|+++++|.||+|++|+|+++++++++|++++++|
T Consensus       215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~  294 (445)
T 4b4t_P          215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLE  294 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccH
Confidence            9999999999999999999999999999999886543  34588999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHH-hhcCcchH-HHHHHHhchhhhhhhcch----hhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHH
Q psy7321         262 AYSILEKMYLD-RIIRKSEL-QDFAALLKPHQKAITVDG----SSILERAVTEHNLLSASKLYNNISFPELGALLQISAA  335 (408)
Q Consensus       262 ~~~~L~k~f~~-~ii~~~~l-~~F~~~L~~h~~~~~~d~----~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e  335 (408)
                      .|+.|+++|.+ ++++|+.+ ..|...|.+|+..+..++    ++.|+++|+||||+++++||++|+|++||++||+|++
T Consensus       295 ~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~  374 (445)
T 4b4t_P          295 SQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTES  374 (445)
T ss_dssp             HHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHH
T ss_pred             HHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHH
Confidence            99999999987 57788765 567788888887655443    6799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCceEEEeccCCcEEEecCC----CchhhHHHHHHHHHHHHHHHHHHHHhhCh
Q psy7321         336 KAEKIASHMICEGRMNGYVDQIDSIVHFETR----EILPSWDKQIESLCYRIDHIMEQIETVQP  395 (408)
Q Consensus       336 ~~E~~ls~mI~~grl~akIDqv~giV~F~~~----~~l~~W~~~I~~l~~~v~~v~~~i~~~~p  395 (408)
                      ++|..+++||.+|+|+|+||||+|+|+|+++    +.++.|+++|.++|+.||+++|+|++|.+
T Consensus       375 evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m  438 (445)
T 4b4t_P          375 QTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGHLITKEEI  438 (445)
T ss_dssp             HHHHHHHHHHHHTSSCCEEETTTTEEEC------------------------------------
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865    68999999999999999999999999874

PyMOL of 4b4t

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A	Back alignment and structure

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47	Back alignment and structure

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}	Back alignment and structure

>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}	Back alignment and structure

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}	Back alignment and structure

>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}	Back alignment and structure

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B	Back alignment and structure

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A	Back alignment and structure

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A	Back alignment and structure

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}	Back alignment and structure

>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18	Back alignment and structure

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A	Back alignment and structure

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}	Back alignment and structure

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A	Back alignment and structure

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A	Back alignment and structure

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A	Back alignment and structure

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}	Back alignment and structure

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19	Back alignment and structure

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A	Back alignment and structure

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A	Back alignment and structure

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1	Back alignment and structure

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A	Back alignment and structure

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A	Back alignment and structure

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A	Back alignment and structure

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A	Back alignment and structure

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}	Back alignment and structure

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}	Back alignment and structure

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A	Back alignment and structure

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28	Back alignment and structure

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1	Back alignment and structure

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50	Back alignment and structure

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*	Back alignment and structure

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}	Back alignment and structure

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*	Back alignment and structure

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}	Back alignment and structure

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		408
d1ufma_		84	a.4.5.47 (A:) COP9 signalosome complex subunit 4,	1e-21

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 84	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 59/75 (78%), Positives = 66/75 (88%)

Query: 293 AITVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNG 352
           + +  GSSIL+RAV EHNLLSASKLYNNI+F ELGALL+I AAKAEKIAS MI EGRMNG
Sbjct: 3   SGSSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNG 62

Query: 353 YVDQIDSIVHFETRE 367
           ++DQID IVHFETRE
Sbjct: 63  FIDQIDGIVHFETRE 77

PyMOL of d1ufma_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		408
d1ufma_		84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	99.82
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	96.84
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	94.21
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	93.97
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	92.95
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	92.44
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	91.9
d1xnfa_		259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	91.59
d1wi9a_		72	Hypothetical protein C20orf116 homolog {Mouse (Mus	91.51
d1dpua_		69	C-terminal domain of RPA32 {Human (Homo sapiens) [	91.03
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	90.86
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	89.29
d2cfxa1		63	Transcriptional regulator LrpC {Bacillus subtilis	88.93
d1z05a1		71	Transcriptional regulator VC2007 N-terminal domain	88.72
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.7
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	88.56
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	88.34
d1z6ra1		70	Mlc protein N-terminal domain {Escherichia coli [T	87.98
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	87.12
d1sfxa_		109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	86.24
d1kt1a1		168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	85.62
d2cg4a1		63	Regulatory protein AsnC {Escherichia coli [TaxId:	84.92
d1ub9a_		100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	84.9
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	84.73
d1w3ba_		388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	84.41
d1kt1a1		168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	84.02
d1hh8a_		192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	83.91
d2cyya1		60	Putative transcriptional regulator PH1519 {Archaeo	83.43
d2fbha1		137	Transcriptional regulator PA3341 {Pseudomonas aeru	82.56
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	82.34
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	82.17
d1i1ga1		60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.15
d1nzna_		122	Mitochondria fission protein Fis1 {Human (Homo sap	80.15

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.6e-21  Score=151.03  Aligned_cols=73  Identities=81%  Similarity=1.138  Sum_probs=70.0

Q ss_pred             hcchhhhHHHHHHHHHHHHHHhccccCChHHHHHHhCCCHHHHHHHHHHHHhcCceEEEeccCCcEEEecCCC
Q psy7321         295 TVDGSSILERAVTEHNLLSASKLYNNISFPELGALLQISAAKAEKIASHMICEGRMNGYVDQIDSIVHFETRE  367 (408)
Q Consensus       295 ~~d~~~~L~~~ViEhNi~~isk~Ys~Itl~~La~lLgls~e~~E~~ls~mI~~grl~akIDqv~giV~F~~~~  367 (408)
                      +++|++.|+++|+||||+.++++|++|+|++||++||+|++++|..+++||.+|+|+|+|||++|+|+|++++
T Consensus         5 ~~~~~t~L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~~~evE~~l~~mI~~~~i~akIDq~~g~V~F~~~e   77 (84)
T d1ufma_           5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETRE   77 (84)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSS
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhhceeeHHHHHHHHCCCHHHHHHHHHHHHhcCeEEEEEeCCCCEEEECCCC
Confidence            4568899999999999999999999999999999999999999999999999999999999999999999764

PyMOL of d1ufma_

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}	Back information, alignment and structure

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}	Back information, alignment and structure

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	Back information, alignment and structure

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure