Psyllid ID: psy7368

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MFQCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MFQCFSANVSFGCFSANVSFGVGAFVIATWEeaglgvqwdnwdkklspsdpfslyDIVWFLYVDSAIYLILVWYIEavfpdgvgvfsqplnqp
Flexible Loop (DISEMBL)
MFQCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Low Complexity Region (SEG)
MFQCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Disordered region (IsUnstruct)
**QCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVF*******
Disordered Region (DISOPRED)
****FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Disordered Region (DISEMBL)
MFQCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Disordered Region (DISPRO)
*FQCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFQCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDGVGVFSQPLNQP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q8R420	1704	ATP-binding cassette sub-	yes	N/A	0.838	0.045	0.367	2e-09
Q99758	1704	ATP-binding cassette sub-	yes	N/A	0.817	0.044	0.363	4e-09
Q9BZC7	2435	ATP-binding cassette sub-	no	N/A	0.752	0.028	0.4	1e-08
P41233	2261	ATP-binding cassette sub-	no	N/A	0.806	0.033	0.4	2e-08
Q9ESR9	2434	ATP-binding cassette sub-	no	N/A	0.752	0.028	0.385	2e-08
O95477	2261	ATP-binding cassette sub-	no	N/A	0.806	0.033	0.4	2e-08
O35600	2310	Retinal-specific ATP-bind	no	N/A	0.774	0.031	0.373	6e-08
P78363	2273	Retinal-specific ATP-bind	no	N/A	0.752	0.030	0.369	7e-08
Q91V24	2159	ATP-binding cassette sub-	no	N/A	0.795	0.034	0.407	2e-07
Q7TNJ2	2170	ATP-binding cassette sub-	no	N/A	0.795	0.034	0.407	2e-07

>sp|Q8R420|ABCA3_MOUSE ATP-binding cassette sub-family A member 3 OS=Mus musculus GN=Abca3 PE=2 SV=3

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 11  FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
             C  +NV+  +GA +I  +E  G G+QW +    ++  D F    ++  L +DSA+Y +
Sbjct: 406 LSCLLSNVAMAMGAQLIGKFEAKGTGIQWRDLLNPVNVDDNFCFGQVLGMLLLDSALYGL 465

Query: 71  LVWYIEAVFPDGVGVFSQP 89
           + WY+EAVFP   GV  QP
Sbjct: 466 VTWYVEAVFPGQFGV-PQP 483

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.
Mus musculus (taxid: 10090)

>sp|Q99758|ABCA3_HUMAN ATP-binding cassette sub-family A member 3 OS=Homo sapiens GN=ABCA3 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 13  CFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILV 72
           C  +NV+  +GA +I  +E  G+G+QW +    ++  D F    ++  L +DS +Y ++ 
Sbjct: 408 CLLSNVAMAMGAQLIGKFEAKGMGIQWRDLLSPVNVDDDFCFGQVLGMLLLDSVLYGLVT 467

Query: 73  WYIEAVFPDGVGVFSQP 89
           WY+EAVFP   GV  QP
Sbjct: 468 WYMEAVFPGQFGV-PQP 483

Plays an important role in the formation of pulmonary surfactant, probably by transporting lipids such as cholesterol.

Homo sapiens (taxid: 9606)

>sp|Q9BZC7|ABCA2_HUMAN ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           +  +FG+G+   A +E AG+G+QW  + +     D F+L   V  L VD+ +Y IL WYI
Sbjct: 854 STTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDAVVYGILTWYI 913

Query: 76  EAVFPDGVGV 85
           EAV P   G+
Sbjct: 914 EAVHPGMYGL 923

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Homo sapiens (taxid: 9606)

>sp|P41233|ABCA1_MOUSE ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=4

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 11  FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
           F    + V+FG G    A +EE G+GVQWDN  +     D F+L   V  +  D+ +Y +
Sbjct: 778 FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGV 837

Query: 71  LVWYIEAVFPDGVGV 85
           + WYIEAVFP   G+
Sbjct: 838 MTWYIEAVFPGQYGI 852

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Mus musculus (taxid: 10090)

>sp|Q9ESR9|ABCA2_RAT ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 41/70 (58%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           +  +FG+G+   A +E AG+G+QW  + +     D F+L   V  L VD+ +Y +L WYI
Sbjct: 854 STTAFGLGSKYFALYEVAGVGIQWHTFSQSPVEGDDFNLLLAVTMLMVDTVVYGVLTWYI 913

Query: 76  EAVFPDGVGV 85
           EAV P   G+
Sbjct: 914 EAVHPGMYGL 923

Probable transporter, its natural substrate has not been found yet. May have a role in macrophage lipid metabolism and neural development.

Rattus norvegicus (taxid: 10116)

>sp|O95477|ABCA1_HUMAN ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query: 11  FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
           F    + V+FG G    A +EE G+GVQWDN  +     D F+L   V  +  D+ +Y +
Sbjct: 778 FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGV 837

Query: 71  LVWYIEAVFPDGVGV 85
           + WYIEAVFP   G+
Sbjct: 838 MTWYIEAVFPGQYGI 852

cAMP-dependent and sulfonylurea-sensitive anion transporter. Key gatekeeper influencing intracellular cholesterol transport.

Homo sapiens (taxid: 9606)

>sp|O35600|ABCA4_MOUSE Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           ++V+FG G   +  +EE GLG+QW N  K     D FS    +  + +D+A+Y +L WY+
Sbjct: 798 SSVAFGFGTEYLVRFEEQGLGLQWSNIGKSPLEGDEFSFLLSMKMMLLDAALYGLLAWYL 857

Query: 76  EAVFPDGVGVFSQPL 90
           + VFP   G +  PL
Sbjct: 858 DQVFP---GDYGTPL 869

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Mus musculus (taxid: 10090)

>sp|P78363|ABCA4_HUMAN Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 3/73 (4%)

Query: 18  VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
           V+FG G   +  +EE GLG+QW N     +  D FS    +  + +D+A+Y +L WY++ 
Sbjct: 800 VAFGFGTEYLVRFEEQGLGLQWSNIGNSPTEGDEFSFLLSMQMMLLDAAVYGLLAWYLDQ 859

Query: 78  VFPDGVGVFSQPL 90
           VFP   G +  PL
Sbjct: 860 VFP---GDYGTPL 869

In the visual cycle, acts as an inward-directed retinoid flipase, retinoid substrates imported by ABCA4 from the extracellular or intradiscal (rod) membrane surfaces to the cytoplasmic membrane surface are all-trans-retinaldehyde (ATR) and N-retinyl-phosphatidyl-ethanolamine (NR-PE). Once transported to the cytoplasmic surface, ATR is reduced to vitamin A by trans-retinol dehydrogenase (tRDH) and then transferred to the retinal pigment epithelium (RPE) where it is converted to 11-cis-retinal. May play a role in photoresponse, removing ATR/NR-PE from the extracellular photoreceptor surfaces during bleach recovery.

Homo sapiens (taxid: 9606)

>sp|Q91V24|ABCA7_MOUSE ATP-binding cassette sub-family A member 7 OS=Mus musculus GN=Abca7 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 18  VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
           V+FG G   +A  EE G G QW N        D FSL  +  FL +D+ IY + +WY+EA
Sbjct: 692 VAFGFGCESLALLEEQGDGAQWHNLGTG-PAEDVFSLAQVSAFLLLDAVIYGLALWYLEA 750

Query: 78  VFPDGVGVFSQPLNQP 93
           V P   G+  +P N P
Sbjct: 751 VCPGQYGI-PEPWNFP 765

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Mus musculus (taxid: 10090)

>sp|Q7TNJ2|ABCA7_RAT ATP-binding cassette sub-family A member 7 OS=Rattus norvegicus GN=Abca7 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 18  VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
           V+FG G   +A  EE G G QW N        D FSL  +  FL +D+ IY + +WY+EA
Sbjct: 693 VAFGFGCESLALLEEQGDGAQWHNLGTG-PAEDVFSLAQVSAFLLLDAVIYGLALWYLEA 751

Query: 78  VFPDGVGVFSQPLNQP 93
           V P   G+  +P N P
Sbjct: 752 VCPGQYGI-PEPWNFP 766

Plays a role in phagocytosis by macrophages of apoptotic cells. Binds APOA1 and may function in apolipoprotein-mediated phospholipid efflux from cells. May also mediate cholesterol efflux. May regulate cellular ceramide homeostasis during keratinocytes differentiation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
405950989	2208	ATP-binding cassette sub-family A member	0.763	0.032	0.465	3e-12
198438381	2242	PREDICTED: similar to rCG31986 [Ciona in	0.849	0.035	0.475	5e-12
443734953	2255	hypothetical protein CAPTEDRAFT_226736 [	0.763	0.031	0.432	5e-11
260810772	1747	hypothetical protein BRAFLDRAFT_66631 [B	0.817	0.043	0.421	7e-11
326427443	1768	ATP-binding cassette [Salpingoeca sp. AT	0.784	0.041	0.424	5e-10
156378019	1792	predicted protein [Nematostella vectensi	0.720	0.037	0.477	6e-10
443734413	1533	hypothetical protein CAPTEDRAFT_163224 [	0.827	0.050	0.397	1e-09
427784385	2338	Putative lipid exporter abca1 [Rhipiceph	0.741	0.029	0.449	2e-09
321476610	2199	ABC protein, subfamily ABCA [Daphnia pul	0.752	0.031	0.4	2e-09
427795723	1079	hypothetical protein, partial [Rhipiceph	0.741	0.063	0.449	2e-09

>gi|405950989|gb|EKC18939.1| ATP-binding cassette sub-family A member 1 [Crassostrea gigas]

 Score = 76.3 bits (186), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/73 (46%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 13  CFSANVSFGVGAFVIATWEEAGLGVQWDN-WDKKLSPSDPFSLYDIVWFLYVDSAIYLIL 71
           C S++++FG G F IA +E+  +GVQW N WD  ++  D FS+  I+  ++VD+ IY +L
Sbjct: 710 CLSSSIAFGFGCFKIAQFEQQAVGVQWHNIWDSPMT-GDDFSMMHIIIMMFVDAIIYGLL 768

Query: 72  VWYIEAVFPDGVG 84
            WYIEAVFP   G
Sbjct: 769 TWYIEAVFPGQYG 781

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|198438381|ref|XP_002124830.1| PREDICTED: similar to rCG31986 [Ciona intestinalis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 1/80 (1%)

Query: 12  GCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLIL 71
            C  + VSFG GA  I+ +E +G G+Q+ NW+K   PSD  +    +  + VD+AIYLIL
Sbjct: 783 ACLLSTVSFGYGAGYISQYEMSGDGIQFYNWNKSPDPSDGMNFLLSMLMMLVDAAIYLIL 842

Query: 72  VWYIEAVFPDGVGVFSQPLN 91
            WYIEAVFP   GV  +P N
Sbjct: 843 TWYIEAVFPGQYGV-PRPWN 861

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443734953|gb|ELU18808.1| hypothetical protein CAPTEDRAFT_226736 [Capitella teleta]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 3/74 (4%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           ++VSFG G   IA +EE G+G+QW N  + +   D FS+   ++ + VD+ IY+I+ WY+
Sbjct: 776 SSVSFGFGCSYIARYEEQGIGIQWSNIHQSVLQEDDFSMLACIFMMLVDALIYMIIAWYV 835

Query: 76  EAVFPDGVGVFSQP 89
           EAVFP   G F  P
Sbjct: 836 EAVFP---GQFGMP 846

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|260810772|ref|XP_002600122.1| hypothetical protein BRAFLDRAFT_66631 [Branchiostoma floridae] gi|229285408|gb|EEN56134.1| hypothetical protein BRAFLDRAFT_66631 [Branchiostoma floridae]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 46/76 (60%)

Query: 10  SFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYL 69
           S  C  +  +FG+GA   A +EE+G G+QWDN+ +     D F+L  ++  L VDS +Y 
Sbjct: 895 SIACLMSTTAFGLGAKYFALYEESGTGIQWDNFLQSPVEGDAFNLCRVMVMLVVDSFVYC 954

Query: 70  ILVWYIEAVFPDGVGV 85
           +L WYIEAV P   G+
Sbjct: 955 LLTWYIEAVHPGSYGL 970

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326427443|gb|EGD73013.1| ATP-binding cassette [Salpingoeca sp. ATCC 50818]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 42/73 (57%)

Query: 13  CFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILV 72
           CF +  +  +GA +IA +E  G GVQW      +S  DPF+   I+  L  DS +Y +L 
Sbjct: 392 CFVSTTAMAIGAQLIAEFEGRGDGVQWATLTDPVSADDPFTFGTIIGMLLFDSIVYAVLT 451

Query: 73  WYIEAVFPDGVGV 85
           WYIEAVFP   G+
Sbjct: 452 WYIEAVFPGEYGI 464

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|156378019|ref|XP_001630942.1| predicted protein [Nematostella vectensis] gi|156217973|gb|EDO38879.1| predicted protein [Nematostella vectensis]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 43/67 (64%)

Query: 19  SFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAV 78
           +FG+GA   A +EE G GVQW N  K     D F+L  +++FL  D+ +Y+ILVWYIEAV
Sbjct: 478 AFGLGARYFALYEEQGEGVQWSNIGKSPIRGDDFNLLKVLYFLVFDTFLYVILVWYIEAV 537

Query: 79  FPDGVGV 85
            P   G+
Sbjct: 538 HPGSYGL 544

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|443734413|gb|ELU18415.1| hypothetical protein CAPTEDRAFT_163224 [Capitella teleta]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           +NV+  +G  VI  +E  G GVQW ++++  +  D F+L  +V  L +D+A+YL++VWY+
Sbjct: 224 SNVAMAMGCQVIGMFEGTGAGVQWSSFNQPATVDDTFTLLHVVIMLLLDAALYLVVVWYV 283

Query: 76  EAVFPDGVGVFSQPLNQP 93
           EAV+P   G+  QP   P
Sbjct: 284 EAVYPGEFGL-PQPWYFP 300

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|427784385|gb|JAA57644.1| Putative lipid exporter abca1 [Rhipicephalus pulchellus]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 17  NVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIE 76
           NV+FG+G    A +EE G+GV W N  +   P D FS+  ++  L +D+ +Y  L WYIE
Sbjct: 818 NVAFGLGCSYFAHFEEEGVGVHWHNLLRGGLPPDTFSIAHVMGMLLLDAVLYFALAWYIE 877

Query: 77  AVFPDGVGV 85
           AVFP   GV
Sbjct: 878 AVFPGQYGV 886

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476610|gb|EFX87570.1| ABC protein, subfamily ABCA [Daphnia pulex]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 41/70 (58%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           ++VSFG+G F  A+ E++G G QW N        D +SL   +  +  D+ +YLIL WY+
Sbjct: 790 SDVSFGIGCFYFASHEQSGEGAQWSNIATSPKDGDAYSLLGCILMMLFDAVLYLILTWYV 849

Query: 76  EAVFPDGVGV 85
           E VFP   G+
Sbjct: 850 ETVFPGQYGI 859

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427795723|gb|JAA63313.1| hypothetical protein, partial [Rhipicephalus pulchellus]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 17  NVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIE 76
           NV+FG+G    A +EE G+GV W N  +   P D FS+  ++  L +D+ +Y  L WYIE
Sbjct: 415 NVAFGLGCSYFAHFEEEGVGVHWHNLLRGGLPPDTFSIAHVMGMLLLDAVLYFALAWYIE 474

Query: 77  AVFPDGVGV 85
           AVFP   GV
Sbjct: 475 AVFPGQYGV 483

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
RGD|631344	2201	Abca1 "ATP-binding cassette, s	0.860	0.036	0.419	6e-10
UNIPROTKB|E1BVQ5	1706	ABCA3 "Uncharacterized protein	0.817	0.044	0.402	7.6e-10
UNIPROTKB|F1LNL3	2258	Abca1 "Protein Abca1" [Rattus	0.860	0.035	0.419	1e-09
UNIPROTKB|F1LRX9	2258	Abca1 "Protein Abca1" [Rattus	0.860	0.035	0.419	1e-09
MGI|MGI:99607	2261	Abca1 "ATP-binding cassette, s	0.860	0.035	0.395	2.1e-09
UNIPROTKB|F1SP55	1293	ABCA1 "Uncharacterized protein	0.860	0.061	0.395	2.4e-09
ZFIN|ZDB-GENE-081205-5	1165	zgc:172302 "zgc:172302" [Danio	0.774	0.061	0.388	3.5e-09
UNIPROTKB|F1MG24	2261	ABCA1 "Uncharacterized protein	0.731	0.030	0.426	4.3e-09
UNIPROTKB|O95477	2261	ABCA1 "ATP-binding cassette su	0.806	0.033	0.4	5.5e-09
ZFIN|ZDB-GENE-031006-12	2268	abca1a "ATP-binding cassette,	0.860	0.035	0.358	5.5e-09

RGD|631344 Abca1 "ATP-binding cassette, subfamily A (ABC1), member 1" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:     5 FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVD 64
             FS  + F    + V+FG G    A +EE G+GVQWDN  K     D F+L   V  +  D
Sbjct:   713 FSIKI-FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFKSPVEEDGFNLTTSVSMMLFD 771

Query:    65 SAIYLILVWYIEAVFPDGVGV 85
             + IY ++ WYIEAVFP   G+
Sbjct:   772 TFIYGVMTWYIEAVFPGQYGI 792

GO:0002790 "peptide secretion" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005887 "integral to plasma membrane" evidence=ISO

GO:0006497 "protein lipidation" evidence=ISO

GO:0006911 "phagocytosis, engulfment" evidence=ISO

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0008203 "cholesterol metabolic process" evidence=ISO

GO:0008509 "anion transmembrane transporter activity" evidence=ISO

GO:0009986 "cell surface" evidence=IDA

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISO

GO:0015914 "phospholipid transport" evidence=IDA;TAS

GO:0016197 "endosomal transport" evidence=ISO

GO:0017127 "cholesterol transporter activity" evidence=ISO

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=IMP;IDA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO

GO:0033700 "phospholipid efflux" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0034616 "response to laminar fluid shear stress" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=ISO

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042493 "response to drug" evidence=IEP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IDA;TAS

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0043691 "reverse cholesterol transport" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=ISO

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=ISO

GO:0071300 "cellular response to retinoic acid" evidence=ISO

GO:0071397 "cellular response to cholesterol" evidence=IEP

GO:0034364 "high-density lipoprotein particle" evidence=IDA

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=ISO

UNIPROTKB|E1BVQ5 ABCA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 7.6e-10, P = 7.6e-10
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:    13 CFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILV 72
             C  +NV+  +GA +I  +E  G G+QW +  K +S  D F+L  ++  L +DS +Y ++ 
Sbjct:   406 CLISNVAMAMGAQLIGMFEGKGTGIQWRDLMKPVSVDDNFTLAQVLGMLLLDSVLYGLVA 465

Query:    73 WYIEAVFPDGVGVFSQP 89
             WY+EAVFP   GV  QP
Sbjct:   466 WYVEAVFPGEYGV-PQP 481

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0097208 "alveolar lamellar body" evidence=IEA

UNIPROTKB|F1LNL3 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:     5 FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVD 64
             FS  + F    + V+FG G    A +EE G+GVQWDN  K     D F+L   V  +  D
Sbjct:   773 FSIKI-FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFKSPVEEDGFNLTTSVSMMLFD 831

Query:    65 SAIYLILVWYIEAVFPDGVGV 85
             + IY ++ WYIEAVFP   G+
Sbjct:   832 TFIYGVMTWYIEAVFPGQYGI 852

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|F1LRX9 Abca1 "Protein Abca1" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query:     5 FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVD 64
             FS  + F    + V+FG G    A +EE G+GVQWDN  K     D F+L   V  +  D
Sbjct:   773 FSIKI-FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFKSPVEEDGFNLTTSVSMMLFD 831

Query:    65 SAIYLILVWYIEAVFPDGVGV 85
             + IY ++ WYIEAVFP   G+
Sbjct:   832 TFIYGVMTWYIEAVFPGQYGI 852

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

MGI|MGI:99607 Abca1 "ATP-binding cassette, sub-family A (ABC1), member 1" [Mus musculus (taxid:10090)]

 Score = 152 (58.6 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 32/81 (39%), Positives = 45/81 (55%)

Query:     5 FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVD 64
             FS  + F    + V+FG G    A +EE G+GVQWDN  +     D F+L   V  +  D
Sbjct:   773 FSIKI-FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFD 831

Query:    65 SAIYLILVWYIEAVFPDGVGV 85
             + +Y ++ WYIEAVFP   G+
Sbjct:   832 TFLYGVMTWYIEAVFPGQYGI 852

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005548 "phospholipid transporter activity" evidence=ISO;IMP;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISO;IDA

GO:0006497 "protein lipidation" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0007040 "lysosome organization" evidence=ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0008203 "cholesterol metabolic process" evidence=ISO;IDA

GO:0008509 "anion transmembrane transporter activity" evidence=IDA

GO:0009986 "cell surface" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0015914 "phospholipid transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016197 "endosomal transport" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=ISO;IMP;IDA

GO:0019905 "syntaxin binding" evidence=ISO

GO:0030139 "endocytic vesicle" evidence=ISO

GO:0030301 "cholesterol transport" evidence=ISO

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=ISO

GO:0031267 "small GTPase binding" evidence=ISO

GO:0032367 "intracellular cholesterol transport" evidence=ISO

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=ISO

GO:0033344 "cholesterol efflux" evidence=ISO;IDA;IMP

GO:0033700 "phospholipid efflux" evidence=ISO;IMP;IDA

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0034186 "apolipoprotein A-I binding" evidence=ISO

GO:0034188 "apolipoprotein A-I receptor activity" evidence=ISO

GO:0034364 "high-density lipoprotein particle" evidence=ISO

GO:0034380 "high-density lipoprotein particle assembly" evidence=ISO

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=ISO

GO:0042157 "lipoprotein metabolic process" evidence=IMP

GO:0042158 "lipoprotein biosynthetic process" evidence=ISO;IMP

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISO

GO:0042632 "cholesterol homeostasis" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0043691 "reverse cholesterol transport" evidence=ISO;IMP

GO:0045121 "membrane raft" evidence=ISO

GO:0045332 "phospholipid translocation" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0050702 "interleukin-1 beta secretion" evidence=ISO

GO:0055091 "phospholipid homeostasis" evidence=ISO

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IMP

GO:0060155 "platelet dense granule organization" evidence=ISO

GO:0071222 "cellular response to lipopolysaccharide" evidence=IDA

GO:0071300 "cellular response to retinoic acid" evidence=IDA

UNIPROTKB|F1SP55 ABCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 151 (58.2 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 32/81 (39%), Positives = 45/81 (55%)

Query:     5 FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVD 64
             FS  + F    + V+FG G    A +EE G+GVQWDN  +     D F+L   V  +  D
Sbjct:   776 FSLKI-FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFD 834

Query:    65 SAIYLILVWYIEAVFPDGVGV 85
             + +Y ++ WYIEAVFP   G+
Sbjct:   835 TFLYGVMTWYIEAVFPGQYGI 855

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ZFIN|ZDB-GENE-081205-5 zgc:172302 "zgc:172302" [Danio rerio (taxid:7955)]

 Score = 149 (57.5 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query:    14 FSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVW 73
             F + V+FG G    + +EE G+G+QW N        D +S    +  LY D+ IY +  W
Sbjct:   789 FLSPVAFGFGCEYFSQYEEQGVGIQWFNLKSSPMEGDTYSFNTSIMMLYADALIYALATW 848

Query:    74 YIEAVFPDGVGV 85
             YIEAVFP   G+
Sbjct:   849 YIEAVFPGQYGI 860

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1MG24 ABCA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 4.3e-09, Sum P(2) = 4.3e-09
 Identities = 29/68 (42%), Positives = 41/68 (60%)

Query:    18 VSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEA 77
             V+FG G    A +EE G+GVQWDN  +  +  D F+L   V  +  D+ +Y ++ WYIEA
Sbjct:   785 VAFGFGCEYFALFEEQGIGVQWDNLFESPTEEDGFNLTTSVSMMLFDTFLYGVMTWYIEA 844

Query:    78 VFPDGVGV 85
             VFP   G+
Sbjct:   845 VFPGQYGI 852

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0060155 "platelet dense granule organization" evidence=IEA

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0050702 "interleukin-1 beta secretion" evidence=IEA

GO:0045335 "phagocytic vesicle" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034616 "response to laminar fluid shear stress" evidence=IEA

GO:0034380 "high-density lipoprotein particle assembly" evidence=IEA

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IEA

GO:0034186 "apolipoprotein A-I binding" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0031267 "small GTPase binding" evidence=IEA

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IEA

GO:0019905 "syntaxin binding" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0016197 "endosomal transport" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008509 "anion transmembrane transporter activity" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007040 "lysosome organization" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|O95477 ABCA1 "ATP-binding cassette sub-family A member 1" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
 Identities = 30/75 (40%), Positives = 42/75 (56%)

Query:    11 FGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLI 70
             F    + V+FG G    A +EE G+GVQWDN  +     D F+L   V  +  D+ +Y +
Sbjct:   778 FASLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDTFLYGV 837

Query:    71 LVWYIEAVFPDGVGV 85
             + WYIEAVFP   G+
Sbjct:   838 MTWYIEAVFPGQYGI 852

GO:0016887 "ATPase activity" evidence=IEA

GO:0002790 "peptide secretion" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006497 "protein lipidation" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0045332 "phospholipid translocation" evidence=IEA

GO:0071222 "cellular response to lipopolysaccharide" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=TAS

GO:0010887 "negative regulation of cholesterol storage" evidence=TAS

GO:0034188 "apolipoprotein A-I receptor activity" evidence=IDA

GO:0042632 "cholesterol homeostasis" evidence=IDA

GO:0008203 "cholesterol metabolic process" evidence=IDA

GO:0033700 "phospholipid efflux" evidence=IDA;IMP

GO:0055091 "phospholipid homeostasis" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IC

GO:0005548 "phospholipid transporter activity" evidence=IDA

GO:0005543 "phospholipid binding" evidence=IC

GO:0043691 "reverse cholesterol transport" evidence=IMP

GO:0019905 "syntaxin binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0008509 "anion transmembrane transporter activity" evidence=ISS

GO:0030819 "positive regulation of cAMP biosynthetic process" evidence=IMP

GO:0005524 "ATP binding" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0016197 "endosomal transport" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0007040 "lysosome organization" evidence=IDA

GO:0032367 "intracellular cholesterol transport" evidence=IMP

GO:0033344 "cholesterol efflux" evidence=IMP;IDA

GO:0017127 "cholesterol transporter activity" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0060155 "platelet dense granule organization" evidence=IMP

GO:0050702 "interleukin-1 beta secretion" evidence=IMP

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0032489 "regulation of Cdc42 protein signal transduction" evidence=IMP

GO:0034186 "apolipoprotein A-I binding" evidence=IPI

GO:0031267 "small GTPase binding" evidence=IPI

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0055098 "response to low-density lipoprotein particle stimulus" evidence=IEP

GO:0034616 "response to laminar fluid shear stress" evidence=IEP

GO:0034380 "high-density lipoprotein particle assembly" evidence=IMP

GO:0038027 "apolipoprotein A-I-mediated signaling pathway" evidence=IDA

ZFIN|ZDB-GENE-031006-12 abca1a "ATP-binding cassette, sub-family A (ABC1), member 1A" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
 Identities = 29/81 (35%), Positives = 42/81 (51%)

Query:     5 FSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVD 64
             F A +     S  V+FG G    A +EE G+G+QW N        D ++L   +  +  D
Sbjct:   777 FGAKIVVSLLSP-VAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYNLTTSICLMLFD 835

Query:    65 SAIYLILVWYIEAVFPDGVGV 85
             S +Y ++ WYIEAVFP   G+
Sbjct:   836 SVLYAVMTWYIEAVFPGQYGI 856

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	9e-11

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 56.2 bits (135), Expect = 9e-11
 Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 16  ANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYI 75
           + V+FG G   +  +EE GLG+QW N        D FS    +  + +D+A+Y +L WY+
Sbjct: 798 SPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYL 857

Query: 76  EAVFPDGVGVFSQPL 90
           + VFP   G +  PL
Sbjct: 858 DQVFP---GDYGTPL 869

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=3.6e-25  Score=187.99  Aligned_cols=90  Identities=29%  Similarity=0.520  Sum_probs=86.2

Q ss_pred             CCchhhHHHHhhccHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy7368           3 QCFSANVSFGCFSANVSFGVGAFVIATWEEAGLGVQWDNWDKKLSPSDPFSLYDIVWFLYVDSAIYLILVWYIEAVFPDG   82 (93)
Q Consensus         3 ~~~~~~k~~~sL~~~~a~~~g~~~i~~~E~~~~G~~w~~~~~~~~~~~~~s~~~~~~~l~~d~~ly~ll~wYld~V~Pg~   82 (93)
                      .++.+.|+++||+||+|+++|+..++.+|.++.|+||+|+.+++..+|+++++.+++||++|+++|++|+||+|+|+|||
T Consensus       785 ~~~~~~~~~~sL~sp~af~~g~~~i~~~e~~~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~Pge  864 (2272)
T TIGR01257       785 RMTADLKTAVSLLSPVAFGFGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGD  864 (2272)
T ss_pred             ccCHHHHHHHHhcCHHHHHHHHHHHHHHhhhCCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCC
Confidence            35678899999999999999999999999999999999999988889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy7368          83 VGVFSQPLNQP   93 (93)
Q Consensus        83 ~Gv~~~pw~Fp   93 (93)
                      ||+|| |||||
T Consensus       865 yG~~k-pw~F~  874 (2272)
T TIGR01257       865 YGTPL-PWYFL  874 (2272)
T ss_pred             CCCCC-Ccccc
Confidence            99998 99997

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00