Psyllid ID: psy7388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MAAHVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccHHHHHHHHcccccccEEEEEcccccccccccccHHHHHcccccccccccccccccccccccccEEccccccccccHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHccccccccccccccccccccEEEEcccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHcccEEEEEEcccHHHHHHHHHHHccccccEEEEccccccccccHHHHHHHHHccccccccEEEcccccccHcccccccccccccEEcccHHHHHHHHHcccHccHHHHHHcccccccHHHHHHHHHHccccccccHccccccccccccEEEEcccccccHHHHHHHcc
Coil and Loop (DISEMBL)
maahvfpgAVATSLKVASSFLIGTKALFIPTFMAALLYFrydlydpetqifDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAggheteitdvpvLSLYLHKsrfdwkyrtqpgttacqamkdkrcvwtrgkviggssVLNTMLYVrgnrrdfdqwaadgnegwsyeEVLPYFKKsmdqrnpylakidryhatggyltvqdspwntplgfrcgcmf
Flexible Loop (DISEMBL)
MAAHVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWkyrtqpgttacqamkdkrcvwtrgkviggssvlNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGyltvqdspwntpLGFRCGCMF
Low Complexity Region (SEG)
MAAHVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIvvgggsagnvvanRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF
Disordered region (IsUnstruct)
****VFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGC**
Disordered Region (DISOPRED)
***HVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLY**********KLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF
Disordered Region (DISEMBL)
MAAHVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF
Disordered Region (DISPRO)
*AAHVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAHVFPGAVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.705	0.252	0.565	9e-47
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.705	0.252	0.552	4e-46
Q8PPG8	556	Choline dehydrogenase OS=	yes	N/A	0.544	0.219	0.488	6e-27
Q3BXK8	556	Choline dehydrogenase OS=	yes	N/A	0.544	0.219	0.488	8e-27
Q6D6D9	559	Choline dehydrogenase OS=	yes	N/A	0.633	0.254	0.445	9e-27
Q8P5D7	556	Choline dehydrogenase OS=	yes	N/A	0.544	0.219	0.480	2e-26
B0RNU9	556	Choline dehydrogenase OS=	yes	N/A	0.544	0.219	0.480	2e-26
Q4UYN5	556	Choline dehydrogenase OS=	yes	N/A	0.544	0.219	0.480	2e-26
A8GBX9	555	Choline dehydrogenase OS=	yes	N/A	0.549	0.221	0.484	2e-26
B2TCJ8	561	Choline dehydrogenase OS=	yes	N/A	0.669	0.267	0.445	2e-26

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  186 bits (473), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 91/161 (56%), Positives = 114/161 (70%), Gaps = 3/161 (1%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
           EYDFIV+GGGSAG+VVA+RLSE P WKVLL+EAGG E     +P + L    S  D++Y 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL 178
           T+P   AC +  ++RC W RGKV+GG+SVLN M+YVRGNR D+D WAADGN GW+Y +VL
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVL 183

Query: 179 PYFKKSMDQRNPYLAKI-DRYHATGGYLTVQDSPWNTPLGF 218
           P+FKKS D  N  L ++   YHA GG L V   P+N PL +
Sbjct: 184 PFFKKSED--NLDLDEVGTEYHAKGGLLPVGKFPYNPPLSY 222

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  184 bits (467), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/161 (55%), Positives = 113/161 (70%), Gaps = 3/161 (1%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
           EYDFIV+GGGSAG+VVA+RLSE P WKVLL+EAGG E     +P + L    S  D++Y 
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query: 119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL 178
           T+P   AC +  ++RC W RGKV+GG+SV+N M+Y+RGNR D+D WAA GN GWSY++VL
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQDVL 183

Query: 179 PYFKKSMDQRNPYLAKI-DRYHATGGYLTVQDSPWNTPLGF 218
           P+FKKS D  N  L  +   YHA GG L V   P+N PL +
Sbjct: 184 PFFKKSED--NLELDAVGTEYHAKGGLLPVGKFPYNPPLSY 222

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|Q8PPG8|BETA_XANAC Choline dehydrogenase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=betA PE=3 SV=1

 Score =  120 bits (302), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 9/131 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
           EYD+I++G GSAGNV+A RL+E+P   VLLLEAGG +  +   T +P  L+  L   R++
Sbjct: 4   EYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRVDFRTQMPAALAFPLQGRRYN 63

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
           W Y T+P       M ++R    RGK +GGSS++N M Y+RGN  DFD WA   G E WS
Sbjct: 64  WAYETEPEPY----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWS 119

Query: 174 YEEVLPYFKKS 184
           Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas axonopodis pv. citri (strain 306) (taxid: 190486)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q3BXK8|BETA_XANC5 Choline dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=betA PE=3 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 86/131 (65%), Gaps = 9/131 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
           EYD+I++G GSAGNV+A RL+E+P   VLLLEAGG +  +   T +P  L+  L   R++
Sbjct: 4   EYDYIIIGAGSAGNVLAARLTEDPGVTVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
           W Y T+P       M ++R    RGK +GGSS++N M Y+RGN  DFD WA   G E WS
Sbjct: 64  WAYETEPEPY----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWS 119

Query: 174 YEEVLPYFKKS 184
           Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. vesicatoria (strain 85-10) (taxid: 316273)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1

 Score =  120 bits (300), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 94/155 (60%), Gaps = 13/155 (8%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
           MEYD+I++G GSAGNV+A RL+E  +  VLLLEAGG +  +   T +P  L+  L   R+
Sbjct: 1   MEYDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGKRY 60

Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGW 172
           +W Y T P       M D+R    RGK +GGSS++N M Y+RGN  DFD WA   G E W
Sbjct: 61  NWAYETDPEPH----MNDRRMECGRGKGLGGSSLINGMCYIRGNAMDFDHWATMSGLEDW 116

Query: 173 SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV 207
           SY + LPYF+K+ + R+      + YH   G ++V
Sbjct: 117 SYLDCLPYFRKA-ETRD---VGANDYHGASGPVSV 147

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8P5D7|BETA_XANCP Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=betA PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 9/131 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
           EYD+I++G GSAGNV+A RL+E+P   VLLLEAGG +  +   T +P  L+  L   R++
Sbjct: 4   EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
           W Y T+P       M ++R    RGK +GGSS++N M Y+RGN  DFD WA   G E W 
Sbjct: 64  WAYETEPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWG 119

Query: 174 YEEVLPYFKKS 184
           Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) (taxid: 190485)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B0RNU9|BETA_XANCB Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain B100) GN=betA PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 9/131 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
           EYD+I++G GSAGNV+A RL+E+P   VLLLEAGG +  +   T +P  L+  L   R++
Sbjct: 4   EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
           W Y T+P       M ++R    RGK +GGSS++N M Y+RGN  DFD WA   G E W 
Sbjct: 64  WAYETEPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWG 119

Query: 174 YEEVLPYFKKS 184
           Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. campestris (strain B100) (taxid: 509169)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q4UYN5|BETA_XANC8 Choline dehydrogenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=betA PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 85/131 (64%), Gaps = 9/131 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
           EYD+I++G GSAGNV+A RL+E+P   VLLLEAGG +  +   T +P  L+  L   R++
Sbjct: 4   EYDYIIIGAGSAGNVLAARLTEDPGVSVLLLEAGGPDYRLDFRTQMPAALAFPLQGRRYN 63

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
           W Y T+P       M ++R    RGK +GGSS++N M Y+RGN  DFD WA   G E W 
Sbjct: 64  WAYETEPEPH----MDNRRMECGRGKGLGGSSLINGMCYIRGNALDFDHWAKRPGLEDWG 119

Query: 174 YEEVLPYFKKS 184
           Y +VLPYF+K+
Sbjct: 120 YRDVLPYFRKA 130

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Xanthomonas campestris pv. campestris (strain 8004) (taxid: 314565)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568) GN=betA PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 86/132 (65%), Gaps = 9/132 (6%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRF 113
           MEYD+I++G GSAGNV+A RL+E+ +  VLLLEAGG +  +   T +P  L+  L   R+
Sbjct: 1   MEYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGGPDYRMDFRTQMPAALAFPLQGRRY 60

Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGW 172
           +W Y T P       M ++R    RGK +GGSS++N M Y+RGN  DFD WA A G E W
Sbjct: 61  NWAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNAMDFDNWAKAPGLEDW 116

Query: 173 SYEEVLPYFKKS 184
           SY + LPYF+K+
Sbjct: 117 SYLDCLPYFRKA 128

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=betA PE=3 SV=1

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 100/164 (60%), Gaps = 14/164 (8%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVP-VLSLYLHKSRFD 114
           EYD+I+VG GSAGNV+A+RL+E+ +  VLLLEAGG +      T +P  L+  L   R++
Sbjct: 5   EYDYIIVGAGSAGNVLASRLTEDADVTVLLLEAGGPDYRFDFRTQMPAALAFPLQGRRYN 64

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWS 173
           W Y T P       M ++R    RGK +GGSS++N M Y+RGN  D+D WAA  G E W+
Sbjct: 65  WAYETDPEPH----MNNRRMECGRGKGLGGSSLINGMCYIRGNALDYDGWAAHAGLENWT 120

Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
           Y + LPYF+K+ + R+   A  + YH   G + V  S P N PL
Sbjct: 121 YLDCLPYFRKA-ETRD---AGANAYHGGDGPVHVTTSKPGNNPL 160

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
193664527	638	PREDICTED: glucose dehydrogenase [accept	0.924	0.324	0.729	6e-89
195432699	701	GK19742 [Drosophila willistoni] gi|19416	0.933	0.298	0.688	4e-85
195043473	695	GH11957 [Drosophila grimshawi] gi|193901	0.933	0.300	0.684	4e-85
322796412	637	hypothetical protein SINV_11913 [Solenop	0.928	0.326	0.702	2e-84
194894927	744	GG19436 [Drosophila erecta] gi|190649795	0.933	0.280	0.679	2e-84
194767920	722	GF19429 [Drosophila ananassae] gi|190622	0.933	0.289	0.674	2e-84
195130092	695	GI15378 [Drosophila mojavensis] gi|19390	0.933	0.300	0.679	4e-84
195396651	694	GJ16801 [Drosophila virilis] gi|19414671	0.928	0.299	0.682	7e-84
156551750	639	PREDICTED: glucose dehydrogenase [accept	0.910	0.319	0.702	7e-84
383860466	628	PREDICTED: glucose dehydrogenase [accept	0.928	0.331	0.698	8e-84

>gi|193664527|ref|XP_001948490.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  332 bits (852), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 151/207 (72%), Positives = 175/207 (84%)

Query: 12  TSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAG 71
           +++K+A+    G K LF+PTF+AAL Y+ YDLYDPE ++ ++K L  EYDFIVVGGGSAG
Sbjct: 10  SAIKLATKVAGGGKLLFLPTFLAALAYYNYDLYDPENRLVNEKNLRSEYDFIVVGGGSAG 69

Query: 72  NVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKD 131
            VVANRLS NP W VLLLEAGGHE+EITDVP +SLYLH S++DWKY+TQP ++ACQAMK 
Sbjct: 70  AVVANRLSANPEWNVLLLEAGGHESEITDVPAISLYLHGSKYDWKYKTQPDSSACQAMKG 129

Query: 132 KRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPY 191
            RC WTRGKVIGGSSVLNTMLYVRGN+RD+D W + GN GW +E+VLPYFKKS DQRNPY
Sbjct: 130 NRCCWTRGKVIGGSSVLNTMLYVRGNKRDYDNWESMGNPGWGFEDVLPYFKKSQDQRNPY 189

Query: 192 LAKIDRYHATGGYLTVQDSPWNTPLGF 218
           LAK  RYHATGGYLTVQDSPWNTPLG 
Sbjct: 190 LAKNTRYHATGGYLTVQDSPWNTPLGI 216

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|195432699|ref|XP_002064354.1| GK19742 [Drosophila willistoni] gi|194160439|gb|EDW75340.1| GK19742 [Drosophila willistoni]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 144/209 (68%), Positives = 177/209 (84%)

Query: 9   AVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGG 68
           A+A ++K+A++ +   K   +P  +AA+ Y+ YDL+DPE + F+ K++ + YDFI++GGG
Sbjct: 44  AIAGAIKLATTVVGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVKQVDLAYDFIIIGGG 103

Query: 69  SAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQA 128
           SAG V+A+RLSE P+WK+LLLEAGGHETEI+DVP+LSLYLHKS+ DWKYRTQP  TACQA
Sbjct: 104 SAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQA 163

Query: 129 MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR 188
           MKDKRC WTRGKV+GGSSVLNTMLY+RGNRRDFDQWA  GN GWSYEE+LPYF+KS DQR
Sbjct: 164 MKDKRCCWTRGKVLGGSSVLNTMLYIRGNRRDFDQWAEFGNPGWSYEEILPYFRKSEDQR 223

Query: 189 NPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           NPYLA+  RYH TGG  TVQDSP+NTP+G
Sbjct: 224 NPYLARNKRYHGTGGLWTVQDSPYNTPIG 252

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195043473|ref|XP_001991625.1| GH11957 [Drosophila grimshawi] gi|193901383|gb|EDW00250.1| GH11957 [Drosophila grimshawi]

 Score =  319 bits (818), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 176/209 (84%)

Query: 9   AVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGG 68
            +A ++K+ ++ +   K   +P  +AA+ Y+ YDL+DPE + F+ K++ + YDFI++GGG
Sbjct: 44  GIAAAIKLTTAVIGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVKQVDLAYDFIIIGGG 103

Query: 69  SAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQA 128
           SAG V+A+RLSE P+WK+LLLEAGGHETEI+DVP+LSLYLHKS+ DWKYRTQP +TACQA
Sbjct: 104 SAGTVLASRLSEVPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQSTACQA 163

Query: 129 MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR 188
           MKDKRC WTRGKVIGGSSVLNTMLY+RGNRRDFDQWA  GN GWSYEE+LPYF+KS DQR
Sbjct: 164 MKDKRCCWTRGKVIGGSSVLNTMLYIRGNRRDFDQWADFGNPGWSYEEILPYFRKSEDQR 223

Query: 189 NPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           NPYLA+  RYH TGG  TVQDSP+NTP+G
Sbjct: 224 NPYLARNKRYHGTGGLWTVQDSPYNTPIG 252

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796412|gb|EFZ18946.1| hypothetical protein SINV_11913 [Solenopsis invicta]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/212 (70%), Positives = 172/212 (81%), Gaps = 4/212 (1%)

Query: 9   AVATSLKVASSFL---IGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVV 65
            V+T++K A++ L   IG K   IP  +AAL YF YDL DPE      K+L  +YDF++V
Sbjct: 6   VVSTAIKTATALLGVGIG-KITIIPVLIAALAYFNYDLMDPENHPRVTKQLRKDYDFVIV 64

Query: 66  GGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTA 125
           GGGSAG+V+ANRL+ENP W VLLLEAGGHETEITDVP+LSLYLHKS+ DW+YRTQP  TA
Sbjct: 65  GGGSAGSVLANRLTENPEWNVLLLEAGGHETEITDVPILSLYLHKSKLDWQYRTQPQDTA 124

Query: 126 CQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSM 185
           CQAM D+RC WTRGKV+GG SVLNTMLY+RGNRRDFDQW + GN GW YE+VLPYFKKS 
Sbjct: 125 CQAMVDRRCCWTRGKVLGGCSVLNTMLYIRGNRRDFDQWESFGNPGWGYEDVLPYFKKSQ 184

Query: 186 DQRNPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           DQRNPYLA+  RYH TGGYLTVQDSP+ TPLG
Sbjct: 185 DQRNPYLARNTRYHGTGGYLTVQDSPYVTPLG 216

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894927|ref|XP_001978146.1| GG19436 [Drosophila erecta] gi|190649795|gb|EDV47073.1| GG19436 [Drosophila erecta]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 177/209 (84%)

Query: 9   AVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGG 68
           A+A ++K+A++ +   K   +P  +AA+ Y+ YDL+DPE + F+ +++ + YDFI++GGG
Sbjct: 44  AIAGAIKLATAVIGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVQQVELAYDFIIIGGG 103

Query: 69  SAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQA 128
           SAG V+A+RLSE P+WK+LLLEAGGHETEI+DVP+LSLYLHKS+ DWKYRTQP  TACQA
Sbjct: 104 SAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQA 163

Query: 129 MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR 188
           MKDKRC WTRGKV+GGSSVLNTMLY+RGN+RDFDQWA  GN GWSYEE+LPYF+KS DQR
Sbjct: 164 MKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEEILPYFRKSEDQR 223

Query: 189 NPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           NPYLA+  RYH TGG  TVQDSP+NTP+G
Sbjct: 224 NPYLARNKRYHGTGGLWTVQDSPYNTPIG 252

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194767920|ref|XP_001966062.1| GF19429 [Drosophila ananassae] gi|190622947|gb|EDV38471.1| GF19429 [Drosophila ananassae]

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 177/209 (84%)

Query: 9   AVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGG 68
           A+A ++K+A++ +   K   +P  +AA+ Y+ YDL+DPE + F+ +++ + YDFI++GGG
Sbjct: 44  AIAGAIKLATAVIGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVQQVELAYDFIIIGGG 103

Query: 69  SAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQA 128
           SAG V+A+RLSE P+WK+LLLEAGGHETEI+DVP+LSLYLHKS+ DWKYRTQP  TACQA
Sbjct: 104 SAGTVLASRLSEVPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQA 163

Query: 129 MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR 188
           MKDKRC WTRGKV+GGSSVLNTMLY+RGN+RDFDQWA  GN GWSYEE+LPYF+KS DQR
Sbjct: 164 MKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWAQFGNPGWSYEEILPYFRKSEDQR 223

Query: 189 NPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           NPYLA+  RYH TGG  TVQD+P+NTP+G
Sbjct: 224 NPYLARNKRYHGTGGLWTVQDAPYNTPIG 252

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195130092|ref|XP_002009488.1| GI15378 [Drosophila mojavensis] gi|193907938|gb|EDW06805.1| GI15378 [Drosophila mojavensis]

 Score =  316 bits (810), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 142/209 (67%), Positives = 176/209 (84%)

Query: 9   AVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGG 68
           A+A+++K+ ++ +   K   +P  +AA+ Y+ YDL+DPE + F+  ++ + YDFI++GGG
Sbjct: 44  AIASAIKLTTAVVGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVPQVELAYDFIIIGGG 103

Query: 69  SAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQA 128
           SAG V+A+RLSE P+WKVLLLEAGG ETEI+DVP+LSLYLHKS+ DWKYRTQP  TACQA
Sbjct: 104 SAGTVLASRLSEIPHWKVLLLEAGGQETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQA 163

Query: 129 MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR 188
           MKDKRC WTRGKVIGGSSVLNTMLY+RGNRRDFDQWA+ GN GWSYEE+LPYF+KS DQR
Sbjct: 164 MKDKRCCWTRGKVIGGSSVLNTMLYIRGNRRDFDQWASFGNPGWSYEEILPYFRKSEDQR 223

Query: 189 NPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           NPYLA+  RYH TGG  TVQD+P+NTP+G
Sbjct: 224 NPYLARNKRYHGTGGLWTVQDAPYNTPIG 252

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396651|ref|XP_002056944.1| GJ16801 [Drosophila virilis] gi|194146711|gb|EDW62430.1| GJ16801 [Drosophila virilis]

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 142/208 (68%), Positives = 175/208 (84%)

Query: 10  VATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGS 69
           +A+++K+ ++ +   K   +P  +AA+ Y+ YDL+DPE + F+  ++ + YDFI++GGGS
Sbjct: 45  IASAIKLTTAVVGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVPQVELAYDFIIIGGGS 104

Query: 70  AGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAM 129
           AG V+A+RLSE P+WKVLLLEAGG ETEI+DVP+LSLYLHKS+ DWKYRTQP  TACQAM
Sbjct: 105 AGTVLASRLSEVPHWKVLLLEAGGQETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQAM 164

Query: 130 KDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRN 189
           KDKRC WTRGKVIGGSSVLNTMLY+RGNRRDFDQWAA GN GWS+EE+LPYF+KS DQRN
Sbjct: 165 KDKRCCWTRGKVIGGSSVLNTMLYIRGNRRDFDQWAAFGNPGWSFEEILPYFRKSEDQRN 224

Query: 190 PYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           PYLA+  RYH TGG  TVQDSP+NTP+G
Sbjct: 225 PYLARNKRYHGTGGLWTVQDSPYNTPIG 252

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551750|ref|XP_001602085.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  315 bits (808), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 144/205 (70%), Positives = 168/205 (81%), Gaps = 1/205 (0%)

Query: 14  LKVASSFL-IGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGN 72
           LK A+  L +G    FIP  +AA+ YF YDL DPE     Q++L  EYDF+VVGGGSAG+
Sbjct: 13  LKAATVLLGVGKVVAFIPALIAAIAYFHYDLMDPENHPRVQRELRREYDFVVVGGGSAGS 72

Query: 73  VVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDK 132
           V+ NRL+ENP+W VLLLEAGGHETEITDVP+LSLYLHKS+ DWKYR QP  +ACQAM DK
Sbjct: 73  VLVNRLTENPDWSVLLLEAGGHETEITDVPILSLYLHKSKLDWKYRAQPQDSACQAMVDK 132

Query: 133 RCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYL 192
           RC WTRGKVIGGSSVLNTMLY+RGNRRDFDQW + GN GW Y+++L YFKKS DQRNPYL
Sbjct: 133 RCCWTRGKVIGGSSVLNTMLYIRGNRRDFDQWESFGNPGWGYDDILHYFKKSEDQRNPYL 192

Query: 193 AKIDRYHATGGYLTVQDSPWNTPLG 217
           A+  +YH TGGYLT+QD+P+NTPLG
Sbjct: 193 ARDQKYHGTGGYLTIQDAPYNTPLG 217

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|383860466|ref|XP_003705710.1| PREDICTED: glucose dehydrogenase [acceptor]-like [Megachile rotundata]

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 146/209 (69%), Positives = 170/209 (81%), Gaps = 1/209 (0%)

Query: 9   AVATSLKVASSFLIGTKALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIVVGGG 68
           A  T+L + S+ ++  K   IP  +AAL YF YDL DPE Q    K+L  EYDF+VVGGG
Sbjct: 4   ATVTTLAIKSATILLGKLAIIPVLIAALAYFNYDLMDPENQPKVTKQLRKEYDFVVVGGG 63

Query: 69  SAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQA 128
           SAG+VV NRL+ENP+W VLLLEAGGHETEITDVP+LS+YLHKS+ DWKYRTQP  +ACQA
Sbjct: 64  SAGSVVVNRLTENPDWSVLLLEAGGHETEITDVPILSIYLHKSKLDWKYRTQPQDSACQA 123

Query: 129 MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR 188
           M D+RC WTRGKV+GGSSVLNTMLY+RGNRRDFDQW + GN GW Y++VLPYF KS DQR
Sbjct: 124 MTDRRCCWTRGKVLGGSSVLNTMLYIRGNRRDFDQWESFGNPGWGYKDVLPYFIKSEDQR 183

Query: 189 NPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
           NPYLA  ++YH  GGYLTVQDSP+NTPLG
Sbjct: 184 NPYLAH-NKYHGVGGYLTVQDSPYNTPLG 211

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0030592	726	CG9514 [Drosophila melanogaste	0.928	0.286	0.638	1.7e-73
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.892	0.284	0.549	2.2e-57
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.839	0.300	0.536	1.5e-51
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.776	0.201	0.553	1.7e-49
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.790	0.285	0.472	4.7e-39
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.866	0.306	0.426	1.3e-38
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.705	0.252	0.503	1.4e-38
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.558	0.200	0.568	9.4e-37
FB|FBgn0030594	646	CG9509 [Drosophila melanogaste	0.580	0.201	0.523	1.2e-34
FB|FBgn0030587	616	CG9522 [Drosophila melanogaste	0.696	0.253	0.471	1.6e-33

FB|FBgn0030592 CG9514 [Drosophila melanogaster (taxid:7227)]

 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 134/210 (63%), Positives = 167/210 (79%)

Query:     9 AVATSLKVASSFLIGT-KALFIPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIXXXX 67
             A+A ++K+A++ +IG  K   +P  +AA+ Y+ YDL+DPE + F+ +++ + YDFI    
Sbjct:    44 AIAGAIKLATA-VIGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVQQVGLAYDFIIIGG 102

Query:    68 XXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQ 127
                      RLSE P+WK+LLLEAGGHETEI+DVP+LSLYLHKS+ DWKYRTQP  TACQ
Sbjct:   103 GSAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDWKYRTQPQPTACQ 162

Query:   128 AMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQ 187
             AMKDKRC WTRGKV+GGSSVLNTMLY+RGN+RDFDQWA  GN GWSYE++LPYF+KS DQ
Sbjct:   163 AMKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWADFGNPGWSYEDILPYFRKSEDQ 222

Query:   188 RNPYLAKIDRYHATGGYLTVQDSPWNTPLG 217
             RNPYLA+  RYH TGG  TVQD+P+NTP+G
Sbjct:   223 RNPYLARNKRYHGTGGLWTVQDAPYNTPIG 252

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 111/202 (54%), Positives = 138/202 (68%)

Query:    16 VASSFLIGTKALF-IPTFMAALLYFRYDLYDPETQIFDQKKLLMEYDFIXXXXXXXXXXX 74
             + S+F + T  L+ IP  +AA+ Y+RYD  DPE++  DQ  L  EYDFI           
Sbjct:    12 IKSTFGVVTTGLWLIPLMLAAITYYRYDAVDPESRPLDQLNLYPEYDFIVVGSGSAGAVV 71

Query:    75 XXRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC 134
               RLSE   WKVLL+EAG  E EI+DVP L+ YL  S+ DW Y+T+P T AC  M++ RC
Sbjct:    72 ANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKTEPSTKACLGMQNNRC 131

Query:   135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAK 194
              W RG+V+GGSSVLN MLYVRGNR D+D WA+ GN GW Y+ VL YFKKS D RNPYLA 
Sbjct:   132 NWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLRYFKKSEDNRNPYLAN 191

Query:   195 IDRYHATGGYLTVQDSPWNTPL 216
              ++YH  GG LTVQ+SPW++PL
Sbjct:   192 -NKYHGRGGLLTVQESPWHSPL 212

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 103/192 (53%), Positives = 131/192 (68%)

Query:    28 FIPTFMAALLYFRYD-LYDPETQIFDQ--KKLLMEYDFIXXXXXXXXXXXXXRLSENPNW 84
             FIP  MAA+ YF+Y+ + DPE++  D     +L  YDFI             RL+E  NW
Sbjct:    25 FIPMLMAAVAYFQYEEIIDPESKPSDVGGDDILDHYDFIVIGAGSAGAVVANRLTEVENW 84

Query:    85 KVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGG 144
              VLLLEAGG ETE+TDVP+++ YL  S+ DW+Y+T+P  T+C AM+  RC W RGKV+GG
Sbjct:    85 NVLLLEAGGDETELTDVPLMAGYLQLSKIDWQYKTEPSGTSCLAMQGGRCNWPRGKVLGG 144

Query:   145 SSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGY 204
             SSVLN MLY+RG++ D+D W A GN  WSY + L YFKKS D  N YLA    YHATGGY
Sbjct:   145 SSVLNYMLYLRGSKHDYDNWEAMGNPSWSYRDALYYFKKSEDNTNQYLANTP-YHATGGY 203

Query:   205 LTVQDSPWNTPL 216
             LTV ++P++TPL
Sbjct:   204 LTVGEAPYHTPL 215

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 522 (188.8 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 98/177 (55%), Positives = 120/177 (67%)

Query:    42 DLYDPETQIFDQKKLLMEYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDV 101
             D  DPE ++ +   +  +YDF+             RLSE  NW VLLLEAGG ETEI+DV
Sbjct:   278 DPVDPENKVQEPTVIRRQYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDV 337

Query:   102 PVLSLYLHKSRFDWKYRTQPGTTA--CQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRR 159
             P L+ YL  +  DWKY+T P +T   CQAMK  RC W RGKV+GGSSVLN M+YVRG++ 
Sbjct:   338 PALAGYLQLTELDWKYQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKN 397

Query:   160 DFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
             D++ WA+ GN GW Y+ +L YF KS D RNPYLAK   YH TGGYLTVQ++PW TPL
Sbjct:   398 DYNHWASLGNPGWDYDSMLKYFLKSEDVRNPYLAKTP-YHETGGYLTVQEAPWRTPL 453

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 419 (152.6 bits), Expect = 4.7e-39, P = 4.7e-39
 Identities = 85/180 (47%), Positives = 108/180 (60%)

Query:    38 YFRYDLYDPETQIFDQKKLL-MEYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHET 96
             + R    D E + +D   +L  EYDFI             RLSENP W+VLLLEAGG E 
Sbjct:    37 FLRRGQADVELENYDNNVILDSEYDFIVVGAGTAGCALAARLSENPQWRVLLLEAGGPER 96

Query:    97 EITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRG 156
              + DVP+++ +L     +WKYRTQP   AC AM + RC W RGKV+GGSSVLN M+Y RG
Sbjct:    97 LVMDVPIVAHFLQLGEMNWKYRTQPSDHACLAMNNNRCNWPRGKVMGGSSVLNYMMYTRG 156

Query:   157 NRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
             NRRD+D+W A GN GWS+++VLPYFKK      P  A+ D Y    G + V    W + +
Sbjct:   157 NRRDYDRWEALGNPGWSFKDVLPYFKKYEGSSVPD-AEED-YVGRNGPVKVSYVNWRSKI 214

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 416 (151.5 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 84/197 (42%), Positives = 113/197 (57%)

Query:    22 IGTKALFIPTFMAALLYFRYDLYDPETQI--FDQKKLLMEYDFIXXXXXXXXXXXXXRLS 79
             +G  A+ I      +L  R D+ D + ++     + L   YDFI             RLS
Sbjct:    17 LGPSAMIILLLNKGILEQRPDIVDEQHRVRSIHIEDLRESYDFIVIGGGSAGCVLAARLS 76

Query:    80 ENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRG 139
             ENP W VLLLEAGG E  + D+P L     +S +DWKY T+P    C AM+D+RC W R 
Sbjct:    77 ENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKYLTEPSDRYCLAMEDQRCFWPRA 136

Query:   140 KVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYH 199
             KV+GG S +N M+Y+RGNRRD+DQWAA GN GW+Y+ +L YF+K  D R P       YH
Sbjct:   137 KVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNILHYFRKLEDMRVPGFEH-SPYH 195

Query:   200 ATGGYLTVQDSPWNTPL 216
               GG ++V+   + +PL
Sbjct:   196 GHGGPISVERYRFPSPL 212

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 415 (151.1 bits), Expect = 1.4e-38, P = 1.4e-38
 Identities = 81/161 (50%), Positives = 101/161 (62%)

Query:    59 EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
             EYDFI             RLSE P WKVLL+EAGG E     +P + L    S  D++Y 
Sbjct:    64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123

Query:   119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL 178
             T+P   AC +  ++RC W RGKV+GG+SVLN M+YVRGNR D+D WAADGN GW+Y +VL
Sbjct:   124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYNDVL 183

Query:   179 PYFKKSMDQRNPYLAKID-RYHATGGYLTVQDSPWNTPLGF 218
             P+FKKS D  N  L ++   YHA GG L V   P+N PL +
Sbjct:   184 PFFKKSED--NLDLDEVGTEYHAKGGLLPVGKFPYNPPLSY 222

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 399 (145.5 bits), Expect = 9.4e-37, P = 9.4e-37
 Identities = 71/125 (56%), Positives = 86/125 (68%)

Query:    59 EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
             +YDFI             RLSENP W+VLLLEAGG E    D+P+++  L     +WKY+
Sbjct:    61 KYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYK 120

Query:   119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL 178
             T+P  + C AM + RC W RGKV+GGSSVLN M+Y RGNRRD+D+WA  GN GWSYEEVL
Sbjct:   121 TEPSNSYCLAMNNNRCNWPRGKVMGGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEVL 180

Query:   179 PYFKK 183
             PYFKK
Sbjct:   181 PYFKK 185

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030594 CG9509 [Drosophila melanogaster (taxid:7227)]

 Score = 381 (139.2 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 68/130 (52%), Positives = 87/130 (66%)

Query:    56 LLMEYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDW 115
             L   YDF+             RLSENP+W+VL+LEAGG     +++P L   L  + F W
Sbjct:    65 LSQPYDFVVIGAGSAGSVVASRLSENPDWRVLVLEAGGDPPVESELPALFFGLQHTNFTW 124

Query:   116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYE 175
              Y T+P   ACQAMKD RC W RGK++GGS  +N MLYVRGNRRDFD WAA G+ GWSY+
Sbjct:   125 NYFTEPSDEACQAMKDGRCYWPRGKMLGGSGGVNAMLYVRGNRRDFDGWAAMGSTGWSYD 184

Query:   176 EVLPYFKKSM 185
             +V+P+F+KS+
Sbjct:   185 QVMPFFEKSV 194

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0007498 "mesoderm development" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)]

 Score = 370 (135.3 bits), Expect = 1.6e-33, P = 1.6e-33
 Identities = 74/157 (47%), Positives = 93/157 (59%)

Query:    60 YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRT 119
             YDFI             RLSENPNW V L+EAGG E  +  VP+L+ +L  +  +W Y +
Sbjct:    51 YDFIIVGGGAAGCTLAARLSENPNWSVFLIEAGGVENIVHQVPLLAAHLQSTASNWGYNS 110

Query:   120 QPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLP 179
              P   AC+ M D +C   RGKV+GG+S +N M+Y RGNRRDFD WAA GN GWSY+EVLP
Sbjct:   111 TPQRHACRGMPDNKCALPRGKVLGGTSSINYMIYNRGNRRDFDAWAAAGNPGWSYDEVLP 170

Query:   180 YFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
             YF +S   +   L     YH   G L+V+D    T L
Sbjct:   171 YFLRSEHAQLQGLEH-SPYHNHSGPLSVEDVRHRTRL 206

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	6e-49
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	1e-39
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	1e-35
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	1e-22
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	6e-15
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	1e-07
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	5e-05
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	2e-04
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	5e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	8e-04
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	0.001
PLN02661	357	PLN02661, PLN02661, Putative thiazole synthesis	0.004

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  167 bits (426), Expect = 6e-49
 Identities = 74/170 (43%), Positives = 95/170 (55%), Gaps = 24/170 (14%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPV---------LSLYL 108
           MEYD+I++G GSAG V+ANRLSE+P+  VLLLEAGG      D            L+  L
Sbjct: 4   MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG-----PDYRWDFFIQMPAALAFPL 58

Query: 109 HKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD- 167
              R++W Y T+P       M ++R    RGKV+GGSS +N M+Y+RGN  D+D WA   
Sbjct: 59  QGKRYNWAYETEPE----PHMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELP 114

Query: 168 GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-PWNTPL 216
           G EGWSY + LPYFKK+  +        D Y    G L+V    P   PL
Sbjct: 115 GLEGWSYADCLPYFKKAETRDGGE----DDYRGGDGPLSVTRGKPGTNPL 160

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  142 bits (360), Expect = 1e-39
 Identities = 67/166 (40%), Positives = 94/166 (56%), Gaps = 8/166 (4%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH-ETEITDVPVLSLYLHKS-RFDW 115
           MEYD+++VG GSAG+V+A RLS+     VL+LEAGG     +  +P    +L    R+DW
Sbjct: 6   MEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDW 64

Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSY 174
            +RT+P       ++ +   W RGKV+GGSS +N M+YVRG+  DFD WA   G  GW Y
Sbjct: 65  GFRTEPEP----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPY 120

Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRC 220
           ++VLPYFK++ D        +  +H  GG L V       P+    
Sbjct: 121 DDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAF 166

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  131 bits (331), Expect = 1e-35
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 13/161 (8%)

Query: 61  DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVP-VLSLYLHKSRFDWK 116
           D+I++GGGSAG+V+A RLSE+ +  VL+LEAGG +     +  +P  L+      R++W 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
           Y T+P       M ++R    RGKV+GGSS +N M+Y RGN  D+++WA   G E W Y 
Sbjct: 61  YETEPEPH----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYA 116

Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
           + LPY+K+ ++    +  +   Y    G + V+  P + PL
Sbjct: 117 DCLPYYKR-LETT--FGGEKP-YRGHDGPIKVRRGPADNPL 153

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 94.9 bits (236), Expect = 1e-22
 Identities = 48/134 (35%), Positives = 68/134 (50%), Gaps = 22/134 (16%)

Query: 61  DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVP-VLSLYLH-----KSRFD 114
           D +VVGGGSAG VVA RLSE+P+  V +LEAG    + + +P  L+  L       S   
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 115 WKYRTQ----PGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNE 170
           W+Y  +    P   +            RG+V+GGS  +N   + R    DFD W      
Sbjct: 62  WRYGVELTDGPRRASAIV---------RGRVLGGSGAVNGGYFCRALPADFDAWPI---P 109

Query: 171 GWSYEEVLPYFKKS 184
           GWS+++VLP+F+  
Sbjct: 110 GWSWDDVLPHFRAI 123

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 70.4 bits (173), Expect = 6e-15
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 132 KRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKS 184
           +R +   G  +GG S +N    +R      D+WA++ G EGW Y++ LPY  K 
Sbjct: 17  RRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV 70

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 54/160 (33%), Positives = 75/160 (46%), Gaps = 24/160 (15%)

Query: 60  YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRT 119
           YD+IVVGGG+AG  +A  LS+  N+ VLLLE GG      +V  L  + H    D    T
Sbjct: 56  YDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLENF-HIGLAD----T 108

Query: 120 QPGTTACQAMKDKRCVW-TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYE--- 175
            P T+A QA      V   R +V+GG + +N   Y R + R F Q A     GW  +   
Sbjct: 109 SP-TSASQAFISTDGVINARARVLGGGTCINAGFYSRASTR-FIQKA-----GWDAKLVN 161

Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHAT--GGYLTVQDSPWN 213
           E  P+ ++ +        K+  + A      L V  SP+N
Sbjct: 162 ESYPWVERQIVHW----PKVAPWQAALRDSLLEVGVSPFN 197

Length = 587

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
           EYD +V+G G AG V A R ++    KV L+E G  
Sbjct: 3  KEYDVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGER 38

Length = 454

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 61  DFIVVGGGSAGNVVANRLSENPNWKVLLLEA---GGHETEITDVPVLSL 106
           D ++VGGG  G  +A  L+ +   KV L+EA           D  V +L
Sbjct: 1   DIVIVGGGPVGLALALALARSGGLKVALIEATPLPAPADPGFDNRVSAL 49

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
           +YD IV+G G AG V A R +     KV L+E G
Sbjct: 2  EKYDVIVIGAGPAGYVAARRAA-KLGKKVALIEKG 35

Length = 460

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 39.4 bits (92), Expect = 8e-04
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
          MEYD ++VG G AG+  A RL++     VL+LE G 
Sbjct: 2  MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGS 36

Length = 396

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 53 QKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
          +KK  M YD IV+GGGS G   A R + N   KV L+E
Sbjct: 42 KKKPRMVYDLIVIGGGSGGMAAARRAARNK-AKVALVE 78

Length = 561

>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLE 90
           + D ++VG GSAG   A  LS+NPN KV ++E
Sbjct: 92  DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE 123

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG1238|consensus	623		100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	99.97
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.97
PLN02785	587	Protein HOTHEAD	99.91
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.5
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.47
PRK10157	428	putative oxidoreductase FixC; Provisional	98.31
PRK10015	429	oxidoreductase; Provisional	98.31
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.21
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.15
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.13
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.12
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.11
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.1
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.08
PRK08274	466	tricarballylate dehydrogenase; Validated	98.06
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.05
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.03
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.02
PRK06116	450	glutathione reductase; Validated	98.02
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.02
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.02
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.01
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.01
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.0
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.0
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.99
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.99
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.99
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.99
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.98
PRK07121	492	hypothetical protein; Validated	97.98
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.98
PRK09126	392	hypothetical protein; Provisional	97.96
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.96
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.95
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.95
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.95
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.95
PRK06370	463	mercuric reductase; Validated	97.95
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.95
COG2081	408	Predicted flavoproteins [General function predicti	97.93
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.93
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.91
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.91
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.91
PRK08013	400	oxidoreductase; Provisional	97.9
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.9
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.9
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.89
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.88
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.88
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.87
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.87
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.86
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.86
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.86
PRK07045	388	putative monooxygenase; Reviewed	97.86
PRK06185	407	hypothetical protein; Provisional	97.86
PLN02463	447	lycopene beta cyclase	97.86
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.85
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.85
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.85
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.84
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.84
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.84
KOG1298|consensus	509		97.83
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.83
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.83
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.82
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.82
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.82
PRK13748	561	putative mercuric reductase; Provisional	97.82
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.81
TIGR02053	463	MerA mercuric reductase. This model represents the	97.81
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.81
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.81
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.81
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.81
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.8
PLN02661	357	Putative thiazole synthesis	97.79
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.78
PLN02985	514	squalene monooxygenase	97.78
PRK14694	468	putative mercuric reductase; Provisional	97.78
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.77
PLN02697	529	lycopene epsilon cyclase	97.76
PTZ00058	561	glutathione reductase; Provisional	97.76
PRK07804	541	L-aspartate oxidase; Provisional	97.76
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.75
PRK06996	398	hypothetical protein; Provisional	97.75
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.74
PRK08244	493	hypothetical protein; Provisional	97.74
PTZ00052	499	thioredoxin reductase; Provisional	97.73
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.72
PRK05257	494	malate:quinone oxidoreductase; Validated	97.71
KOG0029|consensus	501		97.71
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.7
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.69
PRK11445	351	putative oxidoreductase; Provisional	97.69
PLN02507	499	glutathione reductase	97.69
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.69
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.69
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.68
PRK07208	479	hypothetical protein; Provisional	97.68
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.67
PRK06184	502	hypothetical protein; Provisional	97.67
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.67
PRK06847	375	hypothetical protein; Provisional	97.67
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.66
PRK07190	487	hypothetical protein; Provisional	97.66
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.66
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.66
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.65
PTZ00367	567	squalene epoxidase; Provisional	97.65
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.64
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.64
PLN02546	558	glutathione reductase	97.62
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.62
PRK06175	433	L-aspartate oxidase; Provisional	97.62
PRK08275	554	putative oxidoreductase; Provisional	97.62
PLN02576	496	protoporphyrinogen oxidase	97.62
PRK06834	488	hypothetical protein; Provisional	97.61
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.61
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.6
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.6
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.6
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.59
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.59
PRK07588	391	hypothetical protein; Provisional	97.59
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.59
PLN02268	435	probable polyamine oxidase	97.58
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.58
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.58
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.57
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.57
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.56
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.56
PRK08163	396	salicylate hydroxylase; Provisional	97.56
PRK06753	373	hypothetical protein; Provisional	97.56
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.56
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.53
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.53
PRK08401	466	L-aspartate oxidase; Provisional	97.52
PRK07236	386	hypothetical protein; Provisional	97.52
PRK06126	545	hypothetical protein; Provisional	97.52
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.51
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.51
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.51
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.5
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.5
PRK14727	479	putative mercuric reductase; Provisional	97.49
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.49
COG0579	429	Predicted dehydrogenase [General function predicti	97.48
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.48
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.47
PRK10262	321	thioredoxin reductase; Provisional	97.47
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.46
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.46
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	97.46
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.46
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.45
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.45
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.45
COG3573	552	Predicted oxidoreductase [General function predict	97.45
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.44
PRK07395	553	L-aspartate oxidase; Provisional	97.44
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.44
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.43
PRK07233	434	hypothetical protein; Provisional	97.43
PRK12839	572	hypothetical protein; Provisional	97.42
PRK07538	413	hypothetical protein; Provisional	97.4
PLN02815	594	L-aspartate oxidase	97.38
PRK08294	634	phenol 2-monooxygenase; Provisional	97.38
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.37
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.37
PRK09077	536	L-aspartate oxidase; Provisional	97.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.33
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.32
PRK08071	510	L-aspartate oxidase; Provisional	97.32
PLN02568	539	polyamine oxidase	97.31
PLN02676	487	polyamine oxidase	97.31
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.3
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.27
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	97.27
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.26
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.26
PRK05868	372	hypothetical protein; Validated	97.24
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.24
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.23
KOG2415|consensus	621		97.23
PRK07846	451	mycothione reductase; Reviewed	97.22
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.22
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.2
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.19
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.18
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.17
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	97.17
KOG3855|consensus	481		97.13
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.13
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.12
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.11
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.11
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.1
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.09
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	97.07
PRK07512	513	L-aspartate oxidase; Provisional	97.06
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.05
PRK06475	400	salicylate hydroxylase; Provisional	97.02
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.0
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.97
KOG0685|consensus	498		96.92
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.89
KOG2665|consensus	453		96.89
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.88
PRK12831	464	putative oxidoreductase; Provisional	96.88
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.84
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.83
KOG2820|consensus	399		96.81
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.8
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.78
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.74
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.73
PLN02612	567	phytoene desaturase	96.69
PRK07845	466	flavoprotein disulfide reductase; Reviewed	96.69
COG3349	485	Uncharacterized conserved protein [Function unknow	96.69
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.66
KOG0405|consensus	478		96.65
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	96.64
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.61
PLN02529	738	lysine-specific histone demethylase 1	96.6
KOG2614|consensus	420		96.6
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.56
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.51
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.47
KOG1399|consensus	448		96.47
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.46
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	96.44
KOG4716|consensus	503		96.4
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.36
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.36
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	96.32
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.32
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.26
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.23
KOG2960|consensus	328		96.21
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.21
PLN02487	569	zeta-carotene desaturase	96.21
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.05
PLN03000	881	amine oxidase	96.02
PLN02852	491	ferredoxin-NADP+ reductase	96.01
PRK13977	576	myosin-cross-reactive antigen; Provisional	95.99
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.97
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.93
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.91
PLN02976	1713	amine oxidase	95.9
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	95.88
KOG1335|consensus	506		95.77
KOG0042|consensus	680		95.72
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	95.7
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.69
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.68
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	95.55
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.54
KOG4254|consensus	561		95.51
PRK13984	604	putative oxidoreductase; Provisional	95.43
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.43
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.42
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	95.4
PTZ00188	506	adrenodoxin reductase; Provisional	95.32
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	95.25
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	95.25
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	95.19
KOG2853|consensus	509		95.19
PRK09897	534	hypothetical protein; Provisional	95.13
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.93
KOG2311|consensus	679		94.44
KOG3851|consensus	446		94.41
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	94.27
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.85
COG0569	225	TrkA K+ transport systems, NAD-binding component [	93.79
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	93.64
KOG1276|consensus	491		93.62
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	93.5
KOG4405|consensus	547		93.41
KOG1439|consensus	440		93.31
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	93.15
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	93.02
KOG1800|consensus	468		92.78
KOG2755|consensus	334		92.49
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	92.44
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	92.44
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	92.4
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	92.28
COG2907	447	Predicted NAD/FAD-binding protein [General functio	92.24
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	92.01
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	91.96
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	91.8
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	91.76
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	91.61
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	91.58
KOG2844|consensus	856		91.49
KOG2404|consensus	477		91.48
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.24
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	90.98
KOG2495|consensus	491		90.97
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.94
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	90.87
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	90.85
PRK14989	847	nitrite reductase subunit NirD; Provisional	90.79
PRK07846	451	mycothione reductase; Reviewed	90.75
TIGR02053	463	MerA mercuric reductase. This model represents the	90.68
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	90.51
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	90.3
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	90.26
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	90.17
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	90.06
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	89.97
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	89.88
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	89.86
PRK13512	438	coenzyme A disulfide reductase; Provisional	89.83
PRK06370	463	mercuric reductase; Validated	89.82
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	89.82
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	89.75
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.56
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.32
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	89.22
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	89.22
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	88.8
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	88.55
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	88.2
PRK09564	444	coenzyme A disulfide reductase; Reviewed	88.16
PRK06116	450	glutathione reductase; Validated	88.09
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	88.04
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	87.81
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	87.79
PRK07845	466	flavoprotein disulfide reductase; Reviewed	87.77
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	87.64
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	87.49
PTZ00153	659	lipoamide dehydrogenase; Provisional	87.38
PLN02507	499	glutathione reductase	87.37
PRK13748	561	putative mercuric reductase; Provisional	87.31
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	87.28
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	87.09
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	86.96
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	86.91
PRK10262	321	thioredoxin reductase; Provisional	86.88
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	86.73
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.64
PLN02546	558	glutathione reductase	86.23
PRK14694	468	putative mercuric reductase; Provisional	86.22
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.22
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	85.89
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	85.66
PRK14727	479	putative mercuric reductase; Provisional	85.49
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	85.48
PTZ00058	561	glutathione reductase; Provisional	85.47
PRK06719	157	precorrin-2 dehydrogenase; Validated	85.44
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	85.26
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.91
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	84.74
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	84.55
PRK14989	847	nitrite reductase subunit NirD; Provisional	84.55
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	84.51
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.43
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	84.33
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.05
PRK12770	352	putative glutamate synthase subunit beta; Provisio	83.96
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	83.83
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	83.76
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	83.65
KOG0404|consensus	322		83.56
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	83.44
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.38
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	83.02
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	83.01
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	82.78
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	82.73
PTZ00052	499	thioredoxin reductase; Provisional	82.71
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	82.21
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	82.17
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	82.06
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	81.99
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.96
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	81.93
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.92
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	81.37
PRK04148	134	hypothetical protein; Provisional	81.25
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.02
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	80.27
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	80.26

>KOG1238|consensus

Probab=100.00  E-value=1.1e-45  Score=349.87  Aligned_cols=184  Identities=54%  Similarity=0.964  Sum_probs=162.0

Q ss_pred             HHHhccc-CCCCCccccch--hhcCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchhhhhccCCC
Q psy7388          36 LLYFRYD-LYDPETQIFDQ--KKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSR  112 (224)
Q Consensus        36 ~~~~~~~-~~~~~~~~~~~--~~~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~~~~~~~~~  112 (224)
                      +..+++. ..++.+++.+.  .+...+|||||||||+|||++|+||||++++||||||||+.++...++|.+..+++.+.
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~  110 (623)
T KOG1238|consen   31 LILYRRPELVDPESRPSDATGSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSL  110 (623)
T ss_pred             HHhhhcccccCcccccccccccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhcccc
Confidence            3334443 33555554433  23567899999999999999999999999999999999999877788997777888999


Q ss_pred             CCCccccCCCccccccccCCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcCCCCC
Q psy7388         113 FDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYL  192 (224)
Q Consensus       113 ~~w~~~t~p~~~~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~~p~~  192 (224)
                      +||.|.++|++.+|+.+.+++|.|+|||+|||||++|+|+|.|++++|||+|++.||+||+|++++|||+|+|+...|..
T Consensus       111 ~dw~y~t~Ps~~ac~~m~~~~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~  190 (623)
T KOG1238|consen  111 YDWSYHTEPSQHACLAMSEDRCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDP  190 (623)
T ss_pred             ccccCcCccChhhhhhhcCCceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887766


Q ss_pred             CCCCCCCCCCcceEEeeCCCCChhhhhc
Q psy7388         193 AKIDRYHATGGYLTVQDSPWNTPLGFRC  220 (224)
Q Consensus       193 ~~~~~~hg~~Gpl~v~~~~~~~~~~~~~  220 (224)
                      ..++ |||..||+.|+...+.+++..+.
T Consensus       191 ~~~~-y~~~~g~~~ve~~~~~~~~~~~~  217 (623)
T KOG1238|consen  191 ELTP-YHGAGGPLLVEAGVYPNNLFTAF  217 (623)
T ss_pred             ccCc-ccccCCcceeccccccCchhhHh
Confidence            5544 99999999999999998877654

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=7.6e-33  Score=264.32  Aligned_cols=153  Identities=48%  Similarity=0.876  Sum_probs=123.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC---Ccccccchhhhh-ccCCCCCCccccCCCccccccccCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE---TEITDVPVLSLY-LHKSRFDWKYRTQPGTTACQAMKDK  132 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~---~~~~~~p~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~  132 (224)
                      .++|||||||||++|+++|.||||+++++|||||+|+..   ....+.|..... .....++|.|.+.||+.    ..++
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~----~~~~   78 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEPH----MNNR   78 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCCC----CCCC
Confidence            357999999999999999999999666999999999753   122334443222 22356789999988863    4566


Q ss_pred             ceeeccceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeC-
Q psy7388         133 RCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDS-  210 (224)
Q Consensus       133 ~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~-  210 (224)
                      .+.+++||+|||||+||+|+|.|+++.|||.|+.. |+++|+|++|+|||+|+|++..+    ..++||..||++++.+ 
T Consensus        79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~----~~~~~g~~gp~~~~~~~  154 (560)
T PRK02106         79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG----EDDYRGGDGPLSVTRGK  154 (560)
T ss_pred             eeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC----CccccCCCCCEEEeCCC
Confidence            78999999999999999999999999999999986 88999999999999999997632    1347999999999876 


Q ss_pred             CCCChhh
Q psy7388         211 PWNTPLG  217 (224)
Q Consensus       211 ~~~~~~~  217 (224)
                      .+.+++.
T Consensus       155 ~~~~~~~  161 (560)
T PRK02106        155 PGTNPLF  161 (560)
T ss_pred             CCCCHHH
Confidence            4444433

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=9.3e-33  Score=262.15  Aligned_cols=150  Identities=41%  Similarity=0.789  Sum_probs=124.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC---cccccchhhhh-ccCCCCCCccccCCCccccccccCCceee
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET---EITDVPVLSLY-LHKSRFDWKYRTQPGTTACQAMKDKRCVW  136 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~---~~~~~p~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~~~~~  136 (224)
                      ||||||||+||+++|.||||+++.||||||+|+...   .....|..... ...+.++|.|.+.||+.    +.++.+.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~   76 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEPH----MNNRRVGH   76 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCCC----CCCceEee
Confidence            899999999999999999999878999999998532   22334432222 22445789999988874    45778999


Q ss_pred             ccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeCCCCCh
Q psy7388         137 TRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTP  215 (224)
Q Consensus       137 ~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~~~~~~  215 (224)
                      ++||+|||||+||+|+|.|+++.|||.|+. .|+++|+|++|+|||+|+|+...+.    .++||++||+.|..++...+
T Consensus        77 ~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~~----~~~~g~~G~~~v~~~~~~~~  152 (532)
T TIGR01810        77 ARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGGE----KPYRGHDGPIKVRRGPADNP  152 (532)
T ss_pred             ecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCCC----cccCCCCCCEEEecCCCCCH
Confidence            999999999999999999999999999998 7899999999999999999876432    25899999999998777666


Q ss_pred             hhh
Q psy7388         216 LGF  218 (224)
Q Consensus       216 ~~~  218 (224)
                      ..+
T Consensus       153 ~~~  155 (532)
T TIGR01810       153 LFQ  155 (532)
T ss_pred             HHH
Confidence            443

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=99.97  E-value=3.7e-32  Score=259.17  Aligned_cols=160  Identities=42%  Similarity=0.829  Sum_probs=130.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc-ccccchhhhhccCC-CCCCccccCCCccccccccCCce
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE-ITDVPVLSLYLHKS-RFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~-~~~~p~~~~~~~~~-~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      ..+|||||||+|.+||++|+||+ +++.+|||||+|+.... ...+|.....+... .++|.|.++++.    .+.++.+
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~~   79 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGREL   79 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCccc
Confidence            46899999999999999999999 55699999999986443 33445433333333 789999999987    4678889


Q ss_pred             eeccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeCCCC
Q psy7388         135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWN  213 (224)
Q Consensus       135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~~~~  213 (224)
                      .|+|||+|||||+||+|+|+|+++.||+.|.. .|+++|+|+||+|||+|+|++...........||..||+.++.+...
T Consensus        80 ~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~~~~  159 (542)
T COG2303          80 AWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSP  159 (542)
T ss_pred             cccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCCCCc
Confidence            99999999999999999999999999999987 57899999999999999999654321110347999999999988666


Q ss_pred             Chhhhhcc
Q psy7388         214 TPLGFRCG  221 (224)
Q Consensus       214 ~~~~~~~~  221 (224)
                      +|+.+++.
T Consensus       160 ~~~~~a~~  167 (542)
T COG2303         160 NPIARAFI  167 (542)
T ss_pred             hHHHHHHH
Confidence            67776653

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.97  E-value=2.1e-32  Score=240.15  Aligned_cols=150  Identities=39%  Similarity=0.746  Sum_probs=113.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchh-hhhccCCCCCCccccCCCccccccccCCceeecc
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVL-SLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTR  138 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~-~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~r  138 (224)
                      |||||||||++|+++|.||||+++.+|||||+|+........+.. ........++|.+.+.++.    ..+++.+.+++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~   76 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR   76 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence            899999999999999999999988899999999976543322211 1112345678888777665    35677788999


Q ss_pred             ceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEE-eeCCCCChh
Q psy7388         139 GKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV-QDSPWNTPL  216 (224)
Q Consensus       139 g~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v-~~~~~~~~~  216 (224)
                      |++|||||+||+|+++|+++.||+.|+.. |.++|+|++++|||+|+|+...+.    .+.||.+|++++ ..+....|.
T Consensus        77 G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~----~~~~g~~~~~~v~~~~~~~~~~  152 (296)
T PF00732_consen   77 GKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS----SDLHGVDGPLPVSSSPPYPSPM  152 (296)
T ss_dssp             B-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB----GGGSCBSSSEEEHHHCSCHCTH
T ss_pred             ceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc----ccccccccccccccccCCCCHH
Confidence            99999999999999999999999999984 788899999999999999987764    458999999999 444444444


Q ss_pred             h
Q psy7388         217 G  217 (224)
Q Consensus       217 ~  217 (224)
                      .
T Consensus       153 ~  153 (296)
T PF00732_consen  153 N  153 (296)
T ss_dssp             H
T ss_pred             H
Confidence            3

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02785 Protein HOTHEAD

Probab=99.91  E-value=1.2e-24  Score=209.44  Aligned_cols=118  Identities=31%  Similarity=0.481  Sum_probs=95.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchhhhhccCCCCCCccccCCCccccccccCCceee
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVW  136 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~  136 (224)
                      ..+|||||||+|+|||++|.||+|  +.+|||||+|+.+.....+.... .+....++|.|.+.+|..    ..++.+.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~~----~~~~~~~~  125 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQAF----ISTDGVIN  125 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCccccccc----cCCCceec
Confidence            457999999999999999999999  38999999998532212222211 122345789999888852    35677899


Q ss_pred             ccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhc
Q psy7388         137 TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQ  187 (224)
Q Consensus       137 ~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~  187 (224)
                      +|||+|||||+||+|+|.|+++.||+.      .+|+|++++|||++.|+.
T Consensus       126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~  170 (587)
T PLN02785        126 ARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQ  170 (587)
T ss_pred             cccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhcc
Confidence            999999999999999999999999963      689999999999999974

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.50  E-value=4.3e-14  Score=135.13  Aligned_cols=122  Identities=17%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcc-------c------ccchhhh----hccC------------
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI-------T------DVPVLSL----YLHK------------  110 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~-------~------~~p~~~~----~~~~------------  110 (224)
                      ||+||||+|++|+++|..|++++ .+|||||+|......       .      +...+..    .++.            
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g-~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAG-LKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT   79 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCC-CeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence            79999999999999999999987 999999999754310       0      0000000    0000            


Q ss_pred             -CCCCCccccCCCccccc-cc-----cCCce-eeccceEecCCccccceeeecCChhhhHHHhhCCCCCC--ChhchHHH
Q psy7388         111 -SRFDWKYRTQPGTTACQ-AM-----KDKRC-VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGW--SYEEVLPY  180 (224)
Q Consensus       111 -~~~~w~~~t~p~~~~~~-~~-----~~~~~-~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gW--sy~~l~py  180 (224)
                       ....|+-.  |...... +.     ....+ ...|-|+|||+|++|++.+.|.++++-   ...+ .+|  +|+||+||
T Consensus        80 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r---~g~~-~dWPI~y~eL~Py  153 (544)
T TIGR02462        80 LDPTAWSAS--IESFFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER---PKLS-DDAAEDDAEWDRL  153 (544)
T ss_pred             CCccccccC--CCcceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc---cCCC-CCCCCCHHHHHHH
Confidence             01112211  0000000 00     00111 134679999999999999999999652   2233 699  99999999


Q ss_pred             HHHHHhcC
Q psy7388         181 FKKSMDQR  188 (224)
Q Consensus       181 f~k~E~~~  188 (224)
                      |.++|+..
T Consensus       154 Y~~Ae~~~  161 (544)
T TIGR02462       154 YTKAESLI  161 (544)
T ss_pred             HHHHHHHh
Confidence            99999964

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.47  E-value=1.5e-07  Score=86.54  Aligned_cols=37  Identities=46%  Similarity=0.794  Sum_probs=34.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ++||+||||+|+||+++|.+|++++ .+|||||++...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G-~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAG-LDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcC-CeEEEEecCCCC
Confidence            4799999999999999999999998 999999999764

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.31  E-value=6.7e-07  Score=83.28  Aligned_cols=36  Identities=39%  Similarity=0.549  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.||+||||+|+||+++|..|++++ .+|+|||++..
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G-~~V~llEr~~~   39 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREG-AQVLVIERGNS   39 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCC-CeEEEEEcCCC
Confidence            4699999999999999999999997 89999999864

>PRK10015 oxidoreductase; Provisional

Probab=98.31  E-value=7.2e-07  Score=83.22  Aligned_cols=36  Identities=39%  Similarity=0.590  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|+||+++|..|++.+ .+|+|||+++.
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G-~~VlliEr~~~   39 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAG-LDVLVIERGDS   39 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCC-CeEEEEecCCC
Confidence            4699999999999999999999987 99999999875

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.21  E-value=1.2e-06  Score=75.09  Aligned_cols=36  Identities=36%  Similarity=0.511  Sum_probs=30.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||++|||+|++|+++|..|++++ +||+++|+...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g-~kV~v~E~~~~   51 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAG-LKVAVIERKLS   51 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHT-S-EEEEESSSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCC-CeEEEEecCCC
Confidence            5799999999999999999999996 99999998653

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.15  E-value=2.3e-06  Score=73.79  Aligned_cols=34  Identities=47%  Similarity=0.754  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||+||||+|++|+++|.+|++.+ .+|+|||+...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g-~~v~vie~~~~   34 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKG-LRVLLLEKKSF   34 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence            79999999999999999999986 89999999975

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.13  E-value=2.9e-06  Score=74.57  Aligned_cols=37  Identities=32%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      +||+||||+|++|+++|..|++++ .+|+|+|+-+...
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G-~~v~i~E~~~~~~   37 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAG-IDVTIIERRPDPR   37 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTT-CEEEEEESSSSCC
T ss_pred             CceEEEECCCHHHHHHHHHHHhcc-cccccchhccccc
Confidence            589999999999999999999997 9999999987643

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.12  E-value=2.5e-06  Score=78.03  Aligned_cols=32  Identities=38%  Similarity=0.692  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ||+||||+|+||+++|..|++.+ .+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G-~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAG-IETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CcEEEEECC
Confidence            79999999999999999999987 999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.11  E-value=3.3e-06  Score=73.80  Aligned_cols=36  Identities=39%  Similarity=0.476  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+++|.+|++.+ .+|+|||++..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G-~~V~vlEk~~~   55 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNG-LKVCVLERSLA   55 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            4799999999999999999999987 89999999864

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.10  E-value=2.9e-06  Score=79.05  Aligned_cols=35  Identities=40%  Similarity=0.637  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ||+||||+|+||+++|.+|++.+ .+|+|||++...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g-~~V~vlE~~~~~   35 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKG-ARVLVLERNKRV   35 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCccc
Confidence            89999999999999999999987 999999999764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.08  E-value=3.6e-06  Score=79.20  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...||+||||+|+||+++|..|++.| .+|+|||+...
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G-~~VlllEr~~~   73 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGG-IETFLIERKLD   73 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence            35799999999999999999999987 99999999753

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.06  E-value=4.5e-06  Score=78.17  Aligned_cols=35  Identities=40%  Similarity=0.441  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.+|+.+|.++++.+ .+|+|||+++
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G-~~V~vlEk~~   37 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAG-ASVLLLEAAP   37 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            5799999999999999999999997 8999999875

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.05  E-value=5.2e-06  Score=72.59  Aligned_cols=36  Identities=31%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|+||+++|.+|++.+ .+|+|||+...
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G-~~V~liEk~~~   59 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAG-LKVAVFERKLS   59 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCC-CeEEEEecCCC
Confidence            4699999999999999999999976 99999998754

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.03  E-value=5.9e-06  Score=74.50  Aligned_cols=36  Identities=36%  Similarity=0.451  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|..|+.+|..|++.+ .+|+|||++..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g-~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRG-LRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCC-CeEEEEecccC
Confidence            3699999999999999999999987 89999999853

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.02  E-value=8.3e-06  Score=74.68  Aligned_cols=38  Identities=34%  Similarity=0.587  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+||+||||+|++|+++|..|++.+ ++|+|||+.+..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSG-LRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCC-CEEEEEecCCcc
Confidence            35799999999999999999999987 999999998753

>PRK06116 glutathione reductase; Validated

Probab=98.02  E-value=5.8e-06  Score=77.15  Aligned_cols=34  Identities=50%  Similarity=0.696  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G-~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYG-AKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CeEEEEecc
Confidence            4699999999999999999999987 899999986

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.02  E-value=8.1e-06  Score=57.24  Aligned_cols=31  Identities=23%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             EECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          64 VVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        64 VVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      |||+|.+|+.+|.+|++.+ ++|+|+|+....
T Consensus         1 IiGaG~sGl~aA~~L~~~g-~~v~v~E~~~~~   31 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAG-YRVTVFEKNDRL   31 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTT-SEEEEEESSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCC-CcEEEEecCccc
Confidence            8999999999999999986 899999998764

...

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.02  E-value=5.6e-06  Score=77.86  Aligned_cols=38  Identities=32%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++||+||||+|.+||++|.-|+.+| +|||+||+....
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~~G-kkVLhlD~n~~y   39 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSVNG-KKVLHMDRNPYY   39 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhhCC-CEEEEecCCCCc
Confidence            46899999999999999999999997 899999997643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.01  E-value=6.1e-06  Score=76.79  Aligned_cols=35  Identities=31%  Similarity=0.657  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|+||..+|.+|++.+ .+|+|+|+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g-~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAG-WRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCC-CeEEEEcCCC
Confidence            3699999999999999999999987 8999999874

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.01  E-value=5.8e-06  Score=77.53  Aligned_cols=34  Identities=47%  Similarity=0.747  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ++||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G-~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHG-AKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CcEEEeccc
Confidence            3699999999999999999999987 899999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.00  E-value=6.6e-06  Score=74.83  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|++|+.+|..|++.+ ++|+|||+.+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G-~~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHG-FSVAVLEHAA   38 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCC-CEEEEEcCCC
Confidence            5799999999999999999999986 9999999975

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.00  E-value=7.3e-06  Score=74.29  Aligned_cols=37  Identities=35%  Similarity=0.591  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+|+||||+|++|+++|..|++.+ .+|+|||+++..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G-~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSG-LRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCC-CeEEEEecCCCc
Confidence            4699999999999999999999986 899999999763

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.99  E-value=6.2e-06  Score=78.22  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+|+||||+|.+|+++|.+|+++| ++|+|||+-.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G-~~V~VlE~~~   36 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAG-LKVTVLEKND   36 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCC-CEEEEEEecC
Confidence            3699999999999999999999998 9999999754

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.99  E-value=7.6e-06  Score=72.01  Aligned_cols=32  Identities=38%  Similarity=0.581  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      |+||||+|.+|+++|..|++.+ .+|+|||++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G-~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRG-HSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTT-SEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCC-CeEEEEeecc
Confidence            8999999999999999999986 8999999994

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.99  E-value=7.1e-06  Score=77.94  Aligned_cols=36  Identities=36%  Similarity=0.532  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++||+||||||..|+.+|..|+..+ .+|+|||++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rG-~~V~LlEk~d   39 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGRG-LKVLLCEKDD   39 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhCC-CcEEEEECCC
Confidence            46799999999999999999999997 9999999995

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.99  E-value=6.2e-06  Score=70.86  Aligned_cols=34  Identities=35%  Similarity=0.527  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+-|+||||+|++|+++|+.|++++ .||+++|+-
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g-~kV~i~E~~   62 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAG-LKVAIFERK   62 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCC-ceEEEEEee
Confidence            4689999999999999999999996 999999984

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.98  E-value=7.8e-06  Score=77.92  Aligned_cols=36  Identities=33%  Similarity=0.569  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++||+||||+|..|+.+|..|+..+ .||+|||++.
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~rG-l~V~LvEk~d   39 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGRG-LSVLLCEQDD   39 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            45799999999999999999999987 9999999974

>PRK07121 hypothetical protein; Validated

Probab=97.98  E-value=1.1e-05  Score=76.42  Aligned_cols=37  Identities=35%  Similarity=0.361  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..++|+||||+|.||+.+|.+++|++ .+|+|||+...
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~G-~~VillEK~~~   54 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAAG-ARVLVLERAAG   54 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence            35799999999999999999999987 89999999764

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.98  E-value=7.7e-06  Score=73.62  Aligned_cols=34  Identities=32%  Similarity=0.665  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||+||||||.+|+|+|..|++.+ .+||+||+-..
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~g-k~VLIvekR~H   35 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLG-KRVLIVEKRNH   35 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcC-CEEEEEecccc
Confidence            89999999999999999888876 89999999764

>PRK09126 hypothetical protein; Provisional

Probab=97.96  E-value=8.7e-06  Score=74.01  Aligned_cols=35  Identities=37%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+||||+|++|+++|..|++.+ ++|+|+|+...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G-~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSG-LKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCC-CcEEEEeCCCc
Confidence            699999999999999999999987 99999999875

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.96  E-value=8.5e-06  Score=74.85  Aligned_cols=33  Identities=45%  Similarity=0.622  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|.||+++|.+++|++ .+|+|||+++.
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G-~~V~lvek~~~   33 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAG-AKVLLVEKGPR   33 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTT-T-EEEEESSSG
T ss_pred             CEEEECCCHHHHHHHHHHhhhc-CeEEEEEeecc
Confidence            8999999999999999999998 79999999986

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.95  E-value=1e-05  Score=73.85  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+|+||||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G-~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAG-LSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCC-CEEEEEeCCCC
Confidence            35799999999999999999999987 89999999763

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.95  E-value=1.1e-05  Score=76.92  Aligned_cols=38  Identities=29%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...++|+||||+|.+|+.+|.++++.+ .+|+|||+.+.
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~G-a~VivlEK~~~   95 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDAG-MNPVILEKMPV   95 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence            346899999999999999999999987 89999998764

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.95  E-value=8e-06  Score=75.35  Aligned_cols=33  Identities=36%  Similarity=0.509  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +|+||||+|+||+++|..|++.+ .+|+|||+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G-~~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAG-IQTFLLERKP   33 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CcEEEEecCC
Confidence            69999999999999999999987 9999999864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.95  E-value=9.5e-06  Score=76.29  Aligned_cols=35  Identities=40%  Similarity=0.684  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G-~~v~lie~~~   37 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLG-LKTALVEKGK   37 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CeEEEEEccC
Confidence            5799999999999999999999987 8999999863

>PRK06370 mercuric reductase; Validated

Probab=97.95  E-value=1e-05  Score=75.90  Aligned_cols=36  Identities=42%  Similarity=0.543  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~~G-~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAGLG-MKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCC-CeEEEEecCc
Confidence            35799999999999999999999987 8999999863

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.95  E-value=9.4e-06  Score=73.29  Aligned_cols=34  Identities=41%  Similarity=0.516  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||+||||+|.+|+.+|..|++.+ .+|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g-~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHG-KKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence            79999999999999999999987 89999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.93  E-value=1.1e-05  Score=74.50  Aligned_cols=36  Identities=33%  Similarity=0.632  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.+|+||||+|+||.++|..+++.+ .+|+|||+++.
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G-~~V~lid~~~k   37 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAG-RRVLLIDKGPK   37 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcC-CEEEEEecCcc
Confidence            4699999999999999999999987 89999999974

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.93  E-value=1.1e-05  Score=74.98  Aligned_cols=35  Identities=40%  Similarity=0.631  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g-~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAG-KKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCC-CEEEEEecCC
Confidence            3699999999999999999999987 8999999874

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.91  E-value=1.1e-05  Score=75.52  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +||+||||+|+||..+|.++++.+ .+|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G-~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHG-AKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CcEEEEecC
Confidence            699999999999999999999987 899999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.91  E-value=1.3e-05  Score=72.36  Aligned_cols=33  Identities=30%  Similarity=0.473  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G-~~V~vle~~~   33 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRG-LSVTVIERSS   33 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            69999999999999999999986 8999999975

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.91  E-value=1.2e-05  Score=73.56  Aligned_cols=34  Identities=35%  Similarity=0.604  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||++|||+|++|+++|..|++.+ ++|+|||+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G-~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSG-LEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCC-CEEEEEcCCC
Confidence            589999999999999999999986 9999999976

>PRK08013 oxidoreductase; Provisional

Probab=97.90  E-value=1.3e-05  Score=73.53  Aligned_cols=35  Identities=31%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+||||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G-~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSG-LRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCC-CEEEEEeCCCC
Confidence            599999999999999999999987 99999999875

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.90  E-value=1.4e-05  Score=72.70  Aligned_cols=36  Identities=31%  Similarity=0.355  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.||+||||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G-~~v~liE~~~~   41 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAG-ASVALVAPEPP   41 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCC-CeEEEEeCCCC
Confidence            4699999999999999999999986 99999999764

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.90  E-value=1.2e-05  Score=73.71  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +|+||||+|..|+.+|.+|++.+ .+|+|||++.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g-~~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRG-YQVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            69999999999999999999986 8999999986

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.89  E-value=1.4e-05  Score=72.86  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      ||+||||+|++|+++|..|++.+ +++|+|||+.+.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            89999999999999999999974 599999999864

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.88  E-value=1.3e-05  Score=78.06  Aligned_cols=35  Identities=46%  Similarity=0.496  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||+.+|..+++.| .+|+|||...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G-~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMG-AKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcC-CcEEEEeccc
Confidence            4699999999999999999999987 9999999974

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.88  E-value=1.4e-05  Score=74.69  Aligned_cols=35  Identities=40%  Similarity=0.605  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G-~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLG-LKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCC-CcEEEEeccc
Confidence            4799999999999999999999987 8999999864

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.87  E-value=1.5e-05  Score=73.01  Aligned_cols=34  Identities=38%  Similarity=0.614  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHH--hcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRL--SENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rL--ae~~~~~VLlLEaG~~~   95 (224)
                      |+||||+|+||+.+|.+|  +.. +.+|+|||..+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccc
Confidence            899999999999999999  665 4999999998754

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.87  E-value=1.6e-05  Score=72.31  Aligned_cols=33  Identities=36%  Similarity=0.556  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|+||+.+|.+|++.+ .+|+|||+.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g-~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPG-LRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCC
Confidence            8999999999999999999876 89999998764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.86  E-value=1.6e-05  Score=74.26  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..||+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G-~~v~liE~~~   38 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLG-KRVAVIERYR   38 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CEEEEEeccc
Confidence            4699999999999999999999987 8999999863

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.86  E-value=1.4e-05  Score=74.50  Aligned_cols=34  Identities=47%  Similarity=0.653  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      |+||||+|+||+.+|..+++.| .||||||+++..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G-~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAG-AKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-S-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHHCC-CEEEEEECCccC
Confidence            8999999999999999999997 899999998753

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.86  E-value=1.6e-05  Score=74.17  Aligned_cols=32  Identities=44%  Similarity=0.694  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~~G-~~v~lie~   32 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQLG-LKVALVEK   32 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence            499999999999999999999987 89999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07045 putative monooxygenase; Reviewed

Probab=97.86  E-value=1.7e-05  Score=72.25  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|++|||+|++|+++|.-|++.+ ++|+|+|+.+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G-~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARG-HSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcC-CcEEEEeCCCcc
Confidence            4699999999999999999999986 999999998754

>PRK06185 hypothetical protein; Provisional

Probab=97.86  E-value=1.7e-05  Score=72.60  Aligned_cols=36  Identities=31%  Similarity=0.400  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G-~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAG-VDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCc
Confidence            5799999999999999999999986 99999999864

>PLN02463 lycopene beta cyclase

Probab=97.86  E-value=1.6e-05  Score=74.89  Aligned_cols=37  Identities=35%  Similarity=0.472  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...||+||||+|+||+.+|..|++.+ .+|+|||..+.
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~G-l~V~liE~~~~   62 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAG-LSVCCIDPSPL   62 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCC-CeEEEeccCcc
Confidence            35699999999999999999999986 99999999763

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.85  E-value=1.6e-05  Score=72.74  Aligned_cols=36  Identities=36%  Similarity=0.681  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .||+||||+|.+|+.+|..|++. ++.+|+|||++..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            48999999999999999999986 2389999999853

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.85  E-value=1.8e-05  Score=71.28  Aligned_cols=33  Identities=36%  Similarity=0.572  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|++|+++|..|++.+ .+|+|+|+.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G-~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSG-LKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCC-CEEEEEeCCCc
Confidence            8999999999999999999987 99999999975

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.85  E-value=1.8e-05  Score=73.03  Aligned_cols=33  Identities=39%  Similarity=0.673  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||++|||+|.+|+++|.+|++.+ .+|+|||++.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G-~~V~viEk~~   34 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLN-KRVLVVEKRN   34 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CeEEEEecCC
Confidence            79999999999999999999876 8999999854

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.84  E-value=1.9e-05  Score=68.54  Aligned_cols=33  Identities=33%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||+||||+|+||+.+|..|++.+ .+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARAN-LKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CCEEEEeccC
Confidence            79999999999999999999986 8999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.84  E-value=1.7e-05  Score=74.58  Aligned_cols=32  Identities=34%  Similarity=0.580  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +||+||||+|+||..+|.++++.+ .+|+|+|+
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G-~~V~liE~   34 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLG-LKVACVEG   34 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence            599999999999999999999987 89999996

>TIGR02730 carot_isom carotene isomerase

Probab=97.84  E-value=1.8e-05  Score=74.90  Aligned_cols=34  Identities=44%  Similarity=0.511  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||+||||+|.+|+++|..|++++ .+|+|||+...
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G-~~V~vlE~~~~   34 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKG-AKVLVLERYLI   34 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCC-CcEEEEECCCC
Confidence            79999999999999999999997 99999999754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG1298|consensus

Probab=97.83  E-value=1.8e-05  Score=72.81  Aligned_cols=38  Identities=32%  Similarity=0.411  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ...+|+||||+|.+|+.+|..|+++| +||+|||+--.+
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdG-RrVhVIERDl~E   80 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDG-RRVHVIERDLSE   80 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCC-cEEEEEeccccc
Confidence            35799999999999999999999998 899999997544

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.83  E-value=2e-05  Score=75.80  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|..|+.+|..|++.+ .+|+|||++.
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG-~~V~LlEk~d   39 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRG-LRCILVERHD   39 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcC-CeEEEEECCC
Confidence            3699999999999999999999987 8999999974

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.83  E-value=2e-05  Score=73.99  Aligned_cols=36  Identities=36%  Similarity=0.491  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~   93 (224)
                      .++|+||||+|..|+.+|.+|++. ++.+|+|||++.
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            469999999999999999999996 348999999975

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.82  E-value=2.1e-05  Score=74.13  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|+.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G-~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLG-LETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence            4699999999999999999999987 8999999853

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.82  E-value=2.2e-05  Score=73.38  Aligned_cols=34  Identities=47%  Similarity=0.686  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLG-KKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCC-CeEEEEeCC
Confidence            3699999999999999999999987 899999984

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.82  E-value=2.2e-05  Score=73.73  Aligned_cols=34  Identities=32%  Similarity=0.514  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ++||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~~G-~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQLG-LKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC-CeEEEEecC
Confidence            3699999999999999999999986 899999986

>PRK13748 putative mercuric reductase; Provisional

Probab=97.82  E-value=2.1e-05  Score=75.30  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|||++.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G-~~v~lie~~~  131 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQG-ARVTLIERGT  131 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCC-CeEEEEecCc
Confidence            4699999999999999999999987 8999999863

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.81  E-value=2.1e-05  Score=76.97  Aligned_cols=36  Identities=33%  Similarity=0.421  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++||+||||+|..|+.+|..|+..+ .+|+|||++.
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~rG-l~V~LvE~~d  104 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAATRG-LRVGLVERED  104 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHhCC-CEEEEEeccc
Confidence            35699999999999999999999997 9999999984

>TIGR02053 MerA mercuric reductase

Probab=97.81  E-value=2.2e-05  Score=73.60  Aligned_cols=33  Identities=30%  Similarity=0.516  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g-~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELG-ASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCc
Confidence            79999999999999999999987 8999999853

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.81  E-value=2.3e-05  Score=75.35  Aligned_cols=35  Identities=46%  Similarity=0.635  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.||+.+|.++++++ .+|+|||+++
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G-~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAG-KRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            5799999999999999999999997 8999999987

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.81  E-value=2.3e-05  Score=71.56  Aligned_cols=34  Identities=35%  Similarity=0.614  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||++|||+|++|+++|..|++.+ .+|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G-~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQG-RSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCC-CcEEEEcCCC
Confidence            589999999999999999999987 9999999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.81  E-value=2.4e-05  Score=71.78  Aligned_cols=37  Identities=38%  Similarity=0.494  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~   93 (224)
                      ..+||+||||+|..|+.+|..|++. +..+|+|||++.
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            3579999999999999999999985 534899999974

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.81  E-value=2.5e-05  Score=70.61  Aligned_cols=35  Identities=40%  Similarity=0.526  Sum_probs=32.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      |+||||+|++|+++|..|++.++++|+|+|+.+..
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            89999999999999999999865899999998753

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.80  E-value=2.2e-05  Score=74.87  Aligned_cols=35  Identities=31%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+| +|+.+|.+++|.+ .+|+|||+.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G-~~V~vlEk~~~   40 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREG-LSVALVEATDK   40 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCC-CcEEEEecCCC
Confidence            58999999999 9999999999987 89999997754

>PLN02661 Putative thiazole synthesis

Probab=97.79  E-value=2.4e-05  Score=71.60  Aligned_cols=37  Identities=43%  Similarity=0.614  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+++|..|+++++.+|+|||++..
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~  127 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS  127 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence            4699999999999999999999875699999999754

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.78  E-value=2.6e-05  Score=70.82  Aligned_cols=34  Identities=44%  Similarity=0.514  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC---CCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG   92 (224)
                      +.+|+||||+|++|+++|..|++.   + .+|+|||+-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G-~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGG-LPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCC-CEEEEEeCC
Confidence            469999999999999999999987   6 999999994

>PLN02985 squalene monooxygenase

Probab=97.78  E-value=3e-05  Score=74.23  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...||+||||+|.+|+++|..|++++ ++|+|||+...
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G-~~V~vlEr~~~   77 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDG-RRVHVIERDLR   77 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcC-CeEEEEECcCC
Confidence            35799999999999999999999987 99999999753

>PRK14694 putative mercuric reductase; Provisional

Probab=97.78  E-value=2.6e-05  Score=73.30  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g-~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERG-ARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC-CcEEEEEccc
Confidence            5799999999999999999999987 8999999874

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.77  E-value=2.9e-05  Score=74.84  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..||+||||||+||+.+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~g-~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRAK-LDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Confidence            4699999999999999999999986 8999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PLN02697 lycopene epsilon cyclase

Probab=97.76  E-value=2.6e-05  Score=74.93  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..||+||||+|+||+.+|.+|++.+ .+|+|||.+.
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~G-l~V~LIe~~~  141 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLG-LNVGLIGPDL  141 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCC-CcEEEecCcc
Confidence            4699999999999999999999986 9999999863

>PTZ00058 glutathione reductase; Provisional

Probab=97.76  E-value=2.8e-05  Score=75.16  Aligned_cols=35  Identities=49%  Similarity=0.706  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..+||+||||+|+||..+|.++++.+ .+|+|||++
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G-~~ValIEk~   80 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNK-AKVALVEKD   80 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcC-CeEEEEecc
Confidence            36799999999999999999999987 899999985

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.76  E-value=3.4e-05  Score=74.13  Aligned_cols=37  Identities=27%  Similarity=0.295  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..++|+||||+|.||+.+|.+++|.+ .+|+|||++..
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~G-~~VilleK~~~   50 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRAG-RRVLVVTKAAL   50 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcC-CeEEEEEccCC
Confidence            35799999999999999999999986 89999999874

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.75  E-value=3e-05  Score=71.05  Aligned_cols=33  Identities=45%  Similarity=0.888  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~   93 (224)
                      |+||||+|+||+.+|.+|++. ++.+|+|||+++
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            899999999999999999985 359999999987

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06996 hypothetical protein; Provisional

Probab=97.75  E-value=3.4e-05  Score=70.79  Aligned_cols=37  Identities=24%  Similarity=0.486  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~   93 (224)
                      .++||++|||+|++|+++|..|++.+   +++|+|||+..
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            46799999999999999999999976   26899999975

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.74  E-value=3.2e-05  Score=72.94  Aligned_cols=33  Identities=36%  Similarity=0.570  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g-~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLG-LKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence            4799999999999999999999987 89999998

>PRK08244 hypothetical protein; Provisional

Probab=97.74  E-value=3.6e-05  Score=72.62  Aligned_cols=36  Identities=28%  Similarity=0.509  Sum_probs=33.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ++|++|||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G-~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAG-VKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCC
Confidence            589999999999999999999987 999999998653

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.73  E-value=3.5e-05  Score=73.35  Aligned_cols=33  Identities=36%  Similarity=0.630  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ..||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus         4 ~~yDviVIG~GpaG~~AA~~aa~~G-~~V~lie~   36 (499)
T PTZ00052          4 FMYDLVVIGGGSGGMAAAKEAAAHG-KKVALFDY   36 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCC-CeEEEEec
Confidence            4699999999999999999999987 89999996

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.72  E-value=3.4e-05  Score=71.88  Aligned_cols=33  Identities=42%  Similarity=0.727  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHhc----CCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE----NPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae----~~~~~VLlLEaG~   93 (224)
                      ||+||||+|++|+++|..|++    .+ .+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G-~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKD-LKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCC-CeEEEEeCCC
Confidence            799999999999999999998    55 9999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.71  E-value=3.5e-05  Score=73.42  Aligned_cols=37  Identities=24%  Similarity=0.542  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      ..+|+||||||..|+++|..|++. ++++|+|||+...
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            469999999999999999999985 4589999998753

>KOG0029|consensus

Probab=97.71  E-value=3.6e-05  Score=73.50  Aligned_cols=37  Identities=35%  Similarity=0.456  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+..++||||||.||+.+|..|.+.+ .+|+||||-.+
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G-~~V~VLEARdR   49 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFG-FDVLVLEARDR   49 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcC-CceEEEeccCC
Confidence            35799999999999999999999998 89999999654

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.70  E-value=4e-05  Score=70.35  Aligned_cols=33  Identities=27%  Similarity=0.549  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+|++|||+|++|+++|..|++.+ ++|+|||+-
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G-~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESD-LRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCC-CEEEEEcCC
Confidence            589999999999999999999986 999999996

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.69  E-value=4.2e-05  Score=69.67  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +|+||||+|++|+++|..|++.+ ++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G-~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKG-IKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCC-CeEEEecCCC
Confidence            79999999999999999999987 9999999874

>PRK11445 putative oxidoreductase; Provisional

Probab=97.69  E-value=4e-05  Score=69.31  Aligned_cols=32  Identities=31%  Similarity=0.567  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||++|||+|+||+++|..|++.  .+|+|||+-+
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~--~~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK--MKVIAIDKKH   33 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc--CCEEEEECCC
Confidence            8999999999999999999986  7999999876

>PLN02507 glutathione reductase

Probab=97.69  E-value=4.1e-05  Score=72.91  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .+||+||||+|+||..+|.++++.+ .+|+|+|+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~G-~~V~liE~   56 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANFG-AKVGICEL   56 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence            4799999999999999999999997 89999995

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.69  E-value=4.2e-05  Score=72.65  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~   93 (224)
                      +|+||||+|.+|+.+|.+|++. ++++|+|||++.
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~   35 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLD   35 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            6999999999999999999995 459999999975

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.69  E-value=4.2e-05  Score=70.08  Aligned_cols=33  Identities=36%  Similarity=0.469  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+|++|||+|++|+++|..|++.| ++|.|||+-
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G-~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAG-LDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC-CcEEEEccC
Confidence            589999999999999999999998 999999998

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.68  E-value=4.9e-05  Score=68.58  Aligned_cols=36  Identities=39%  Similarity=0.580  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|..|++.+ .+|+|+|++.-
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G-~~V~vie~~~~   38 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLEAGEA   38 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcC-CEEEEEecCcc
Confidence            5799999999999999999999998 69999999874

>PRK07208 hypothetical protein; Provisional

Probab=97.68  E-value=5.1e-05  Score=71.10  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..|+||||+|.+|+++|.+|++++ .+|+|||+...
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g-~~v~v~E~~~~   38 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRG-YPVTVLEADPV   38 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            5689999999999999999999986 89999999543

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.67  E-value=4.9e-05  Score=72.55  Aligned_cols=36  Identities=33%  Similarity=0.492  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~   93 (224)
                      .+||+||||||..|+.+|..|++. +.++|+|||+..
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            569999999999999999999995 557999999985

>PRK06184 hypothetical protein; Provisional

Probab=97.67  E-value=5.1e-05  Score=71.84  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +++|++|||+|++|+++|..|++.+ ++|+|||+-+..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~G-i~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRG-VSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCCC
Confidence            3699999999999999999999997 999999997643

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.67  E-value=4.7e-05  Score=73.89  Aligned_cols=36  Identities=31%  Similarity=0.459  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++++ .+|+|||++..
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G-~~VivlEk~~~   45 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARG-LDTLVVEKSAH   45 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCC-CcEEEEEcCCC
Confidence            5799999999999999999999987 89999998764

>PRK06847 hypothetical protein; Provisional

Probab=97.67  E-value=5.5e-05  Score=68.24  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..|++|||+|++|+++|..|++.+ .+|+|+|+-+.
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~~g-~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRRAG-IAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence            4689999999999999999999986 99999998764

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.66  E-value=5.1e-05  Score=69.45  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+|++|||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G-~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAG-IDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcC-CCEEEEEcCCc
Confidence            589999999999999999999987 99999999874

>PRK07190 hypothetical protein; Provisional

Probab=97.66  E-value=5.2e-05  Score=72.01  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+|+||||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~G-i~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCG-LNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcC-CCEEEEeCCCcc
Confidence            4699999999999999999999987 999999998753

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.66  E-value=5.2e-05  Score=73.30  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|.++++++ .+|+|||+...
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G-~~v~llEk~~~   43 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLG-LDVVVLEKEPV   43 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence            4799999999999999999999987 79999999764

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.66  E-value=5e-05  Score=71.74  Aligned_cols=35  Identities=46%  Similarity=0.671  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||-++|.|+++.+ .||+|+|+++
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G-~kvalvE~~~   37 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLG-LKVALVEKGE   37 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCC-CCEEEEeecC
Confidence            5799999999999999999999998 5599999995

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.65  E-value=4.6e-05  Score=72.38  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+||+||||+|+||..+|.++++..+.+|+|||++
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~   36 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ   36 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence            46999999999999999999999623899999973

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00367 squalene epoxidase; Provisional

Probab=97.65  E-value=5.3e-05  Score=73.40  Aligned_cols=35  Identities=49%  Similarity=0.708  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|+++|..|++.+ .+|+|||+.+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G-~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQG-RKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcC-CEEEEEcccc
Confidence            5799999999999999999999987 8999999976

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.64  E-value=5.6e-05  Score=71.27  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -|+||||||.+|+++|.+|++++ ++|+|||+...
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G-~~v~vlE~~~~   35 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRG-YRVTLLEQHAQ   35 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            58999999999999999999987 99999998754

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.64  E-value=5.3e-05  Score=69.55  Aligned_cols=35  Identities=17%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+|++|||+|++|+++|..|++.+ ++|+|||+-+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G-~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAG-IDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence            589999999999999999999987 99999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02546 glutathione reductase

Probab=97.62  E-value=5.5e-05  Score=73.11  Aligned_cols=33  Identities=21%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .+||+||||+|+||..+|.++++.+ .+|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G-~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFG-ASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence            4699999999999999999999987 89999995

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.62  E-value=5.7e-05  Score=74.15  Aligned_cols=34  Identities=38%  Similarity=0.635  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++|+||||+|.+|+.+|..|++.+ ++|+|||++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G-~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRG-WQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            589999999999999999999987 8999999985

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.62  E-value=5.8e-05  Score=70.57  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++. .+ .+|+|||+++.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G-~~V~lleK~~~   37 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KD-LKILMVSKGKL   37 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cC-CCEEEEecCCC
Confidence            4799999999999999999975 45 89999999865

>PRK08275 putative oxidoreductase; Provisional

Probab=97.62  E-value=5.9e-05  Score=72.61  Aligned_cols=37  Identities=41%  Similarity=0.656  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ +.+|+|||+++.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            4699999999999999999999863 489999999875

>PLN02576 protoporphyrinogen oxidase

Probab=97.62  E-value=6.6e-05  Score=70.67  Aligned_cols=36  Identities=33%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+++|.+|+++ + .+|+|||+...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g-~~v~vlEa~~r   47 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHG-VNVLVTEARDR   47 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcC-CCEEEEecCCC
Confidence            468999999999999999999998 6 89999999754

>PRK06834 hypothetical protein; Provisional

Probab=97.61  E-value=6.4e-05  Score=71.38  Aligned_cols=36  Identities=25%  Similarity=0.414  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+++|..|++.+ ++|+|||+-+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G-~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAG-VDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            3599999999999999999999987 99999998764

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.61  E-value=6.6e-05  Score=69.73  Aligned_cols=34  Identities=35%  Similarity=0.337  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|.+|+.+|.+++|++..+|+|||+.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~   34 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV   34 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence            8999999999999999999985369999998764

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.60  E-value=6.3e-05  Score=73.49  Aligned_cols=36  Identities=33%  Similarity=0.314  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G-~~V~lveK~~~   63 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELG-YKTACISKLFP   63 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcC-CcEEEEeccCC
Confidence            5799999999999999999999986 89999999864

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.60  E-value=6.9e-05  Score=72.29  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.+|+.+|.+|++.+ .+|+|||+..
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G-~~v~liEk~~   39 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSG-LEPLIVEKQD   39 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence            4799999999999999999999987 8999999864

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.60  E-value=6.2e-05  Score=72.84  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      ++|+||||+|.||+.+|.++++.+ +.+|+|||++..
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            689999999999999999999864 379999999864

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.59  E-value=7.2e-05  Score=68.53  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      |+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g-~~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAG-HEVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCC
Confidence            7999999999999999999986 8999999985

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.59  E-value=6.5e-05  Score=73.24  Aligned_cols=36  Identities=33%  Similarity=0.499  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC--CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.  + .+|+|||++..
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G-~~V~lieK~~~   47 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPD-LKVLIVEKANI   47 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCC-CeEEEEECCCc
Confidence            469999999999999999999997  5 89999999763

>PRK07588 hypothetical protein; Provisional

Probab=97.59  E-value=7.1e-05  Score=68.25  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|++|+++|..|++.+ .+|+|+|+.+.
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G-~~v~v~E~~~~   34 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYG-HEPTLIERAPE   34 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCC-CceEEEeCCCC
Confidence            7999999999999999999987 89999999865

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.59  E-value=7.1e-05  Score=72.73  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||.+..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G-~~V~lleK~~~   41 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSG-QSCALLSKVFP   41 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcC-CcEEEEEccCC
Confidence            4799999999999999999999986 89999999853

>PLN02268 probable polyamine oxidase

Probab=97.58  E-value=8.1e-05  Score=68.91  Aligned_cols=33  Identities=42%  Similarity=0.662  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||||+|.+|+.+|.+|.+.+ .+|+||||..+
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g-~~v~vlEa~~r   34 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDAS-FKVTLLESRDR   34 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCCC
Confidence            7899999999999999999976 89999999765

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.58  E-value=7.1e-05  Score=72.85  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G-~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAG-LKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcC-CcEEEEEccCC
Confidence            4799999999999999999999987 89999999753

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.58  E-value=7.1e-05  Score=72.34  Aligned_cols=36  Identities=33%  Similarity=0.558  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G-~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAG-FKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCC-CcEEEEEccCC
Confidence            4699999999999999999999986 89999998753

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.57  E-value=7.6e-05  Score=73.49  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ++||+||||+|+||..+|.++++.+ .||+|+|.+
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G-~kV~lie~~  148 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERG-LKVIIFTGD  148 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCC
Confidence            3799999999999999999999987 899999965

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.57  E-value=7.8e-05  Score=72.44  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||++.
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~G-~~V~vleK~~   45 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARAG-LSVAVLSKVF   45 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCC-CcEEEEeccC
Confidence            4699999999999999999999986 8999999974

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.56  E-value=7.4e-05  Score=73.10  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G-~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERG-LRVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCC-CCEEEEeccCC
Confidence            4699999999999999999999987 89999999753

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.56  E-value=9.2e-05  Score=70.83  Aligned_cols=37  Identities=32%  Similarity=0.435  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|+||||+|++|+++|..|++.+ ++|+|||+.+..
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G-~~v~v~Er~~~~   45 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYG-VRVLVLERWPTL   45 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCCC
Confidence            5799999999999999999999986 999999998753

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.56  E-value=9.1e-05  Score=67.39  Aligned_cols=36  Identities=33%  Similarity=0.415  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...|+||||+|++|+++|..|++.+ ++|+|+|+.+.
T Consensus         3 ~~~~V~IvGaGiaGl~~A~~L~~~g-~~v~v~Er~~~   38 (396)
T PRK08163          3 KVTPVLIVGGGIGGLAAALALARQG-IKVKLLEQAAE   38 (396)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCC-CcEEEEeeCcc
Confidence            4589999999999999999999987 99999999864

>PRK06753 hypothetical protein; Provisional

Probab=97.56  E-value=8.6e-05  Score=67.02  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      |+||||+|++|+++|..|++.+ ++|+|+|+.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQG-HEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCcc
Confidence            7999999999999999999987 999999998753

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.56  E-value=8.2e-05  Score=71.02  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEa   91 (224)
                      +++|+||||||.+|+++|..|++. +.++|+|||+
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            579999999999999999999985 4599999999

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.53  E-value=0.0001  Score=68.96  Aligned_cols=34  Identities=35%  Similarity=0.560  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|.+|+.+|.+|++.+ .+|+|||+|.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g-~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAG-KRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCC-CcEEEEECCC
Confidence            599999999999999999999987 8999999985

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.53  E-value=9.8e-05  Score=68.64  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~~   94 (224)
                      .|+||||+|.+|+++|.+|+++.   +.+|+|+|+...
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r   40 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR   40 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence            69999999999999999999972   389999999754

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.52  E-value=9.7e-05  Score=69.63  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +|+||||+|.||+.+|.+++|.+ .+|+|||++..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G-~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKG-FDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence            79999999999999999999987 89999999753

>PRK07236 hypothetical protein; Provisional

Probab=97.52  E-value=0.00011  Score=67.07  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..|+||||+|++|+++|.-|++.+ ++|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAG-WDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence            4589999999999999999999987 99999999863

>PRK06126 hypothetical protein; Provisional

Probab=97.52  E-value=0.00011  Score=70.26  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|++|||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G-~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRG-VDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            5799999999999999999999987 99999998764

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.51  E-value=0.00011  Score=70.93  Aligned_cols=36  Identities=36%  Similarity=0.567  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|+||||+|.+|+++|.++++.+ .+|+|||+.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G-~~v~llEk~~~   41 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRG-LSTVVVEKAPH   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            5799999999999999999999987 89999999653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.51  E-value=9.9e-05  Score=72.41  Aligned_cols=36  Identities=33%  Similarity=0.355  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||.+..
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G-~~VilveK~~~   84 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHG-FNTACITKLFP   84 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcC-CcEEEEEcCCC
Confidence            4799999999999999999999987 89999999863

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.51  E-value=0.00011  Score=60.37  Aligned_cols=31  Identities=32%  Similarity=0.542  Sum_probs=25.2

Q ss_pred             EEECCChHHHHHHHHHhcCCCCe-EEEeecCCC
Q psy7388          63 IVVGGGSAGNVVANRLSENPNWK-VLLLEAGGH   94 (224)
Q Consensus        63 IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~~   94 (224)
                      ||||+|++|+.+|.+|.+.+ .+ |+|||++..
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g-~~~v~v~e~~~~   32 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERG-IDPVVVLERNDR   32 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT----EEEEESSSS
T ss_pred             CEECcCHHHHHHHHHHHhCC-CCcEEEEeCCCC
Confidence            79999999999999999997 67 999999865

...

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.50  E-value=8.3e-05  Score=70.21  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||||||.+|+++|.+|+++| ++|+|||+-..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G-~~V~VlE~~~~   32 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAG-IPVTVVEQRDK   32 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCC-CcEEEEECCCC
Confidence            589999999999999999987 99999999765

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.50  E-value=0.00016  Score=69.33  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..++|++|||+|++|+++|..|++.+ .+|+|||+-+.
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G-~~v~viE~~~~   57 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQG-VPVVLLDDDDT   57 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCC-CcEEEEeCCCC
Confidence            36799999999999999999999987 99999999864

>PRK14727 putative mercuric reductase; Provisional

Probab=97.49  E-value=0.00012  Score=69.09  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..||+||||+|+||..+|.+|++.+ .+|+|+|++
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g-~~v~~ie~~   48 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHG-ARVTIIEGA   48 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEEcc
Confidence            4699999999999999999999987 899999987

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.49  E-value=0.00011  Score=71.22  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC--CeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPN--WKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~--~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+.  .+|+|||++..
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~   42 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP   42 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence            46999999999999999999999863  79999998764

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.48  E-value=0.00013  Score=68.46  Aligned_cols=37  Identities=43%  Similarity=0.747  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .+||++|||+|..|+++|..|++- |+++|+|||+=..
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~   39 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDG   39 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCc
Confidence            479999999999999999999995 4599999999754

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.48  E-value=0.00011  Score=70.66  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G-~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAG-LNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCC-CcEEEEeccCC
Confidence            8999999999999999999987 89999999753

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.47  E-value=0.00013  Score=67.29  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      ++||||||.||+++|.+|++.+ +.+|+|||+...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~   36 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDR   36 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCC
Confidence            5899999999999999999974 379999999653

>PRK10262 thioredoxin reductase; Provisional

Probab=97.47  E-value=0.00013  Score=64.84  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..+|++|||+|+||+.+|..|++.+ .+|+++|..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g-~~~~~ie~~   38 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARAN-LQPVLITGM   38 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CCeEEEEee
Confidence            5799999999999999999999986 789999864

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.46  E-value=0.00013  Score=71.60  Aligned_cols=35  Identities=34%  Similarity=0.451  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G-~~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELG-YNVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcC-CcEEEEecCC
Confidence            4699999999999999999999986 8999999743

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.46  E-value=0.00012  Score=72.09  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||..+.
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G-~~VivleK~~~   39 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRG-LDTIVLSLVPA   39 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcC-CCEEEEeCCCC
Confidence            4699999999999999999999987 89999998764

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=97.46  E-value=0.00013  Score=69.23  Aligned_cols=32  Identities=44%  Similarity=0.744  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +||+||||+|+||..+|.++++.+ .+|+|||+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G-~~v~lie~   33 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYG-AKVMLLDF   33 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence            599999999999999999999987 89999996

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00014  Score=65.27  Aligned_cols=35  Identities=43%  Similarity=0.646  Sum_probs=30.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~   93 (224)
                      +.||+||||||+||+.+|-.+++.+ ++ ++++|.+.
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~-l~~~li~~~~~   37 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAG-LKVVLILEGGE   37 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcC-CCcEEEEecCC
Confidence            4699999999999999999999986 77 88888753

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.45  E-value=0.00012  Score=70.26  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++ +.+ .+|+|||++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G-~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERG-KNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcC-CCEEEEEccCC
Confidence            468999999999999999999 876 89999999753

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.45  E-value=0.00014  Score=70.47  Aligned_cols=35  Identities=31%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++||+||||+| +|..+|.+.++.+ .+|+|||+.+
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G-~~v~v~Ek~~   48 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELG-LSVLIVEKSS   48 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCC-CcEEEEecCC
Confidence            358999999999 8999999999987 8999999874

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.45  E-value=0.00017  Score=58.99  Aligned_cols=32  Identities=38%  Similarity=0.592  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      |+||||+|+||..+|.+|++.+ .+|+++|..+
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~-~~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPG-AKVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT-SEEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCC-CeEEEEeccc
Confidence            7999999999999999999765 9999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.45  E-value=0.00016  Score=65.98  Aligned_cols=38  Identities=39%  Similarity=0.614  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      .++|+||||+|.||+|+|.+|++.+ ++|++||.-+..+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG-~~V~ildQEgeqn   41 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAG-KRVLILDQEGEQN   41 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcC-ceEEEEccccccc
Confidence            5799999999999999999999997 8999999876543

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.44  E-value=0.00014  Score=70.76  Aligned_cols=34  Identities=32%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..|+||||+|.||+.+|.++++.+ .+|+|||.+.
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~~G-~~V~lieK~~   36 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAEAG-VHVDLFSLVP   36 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHHcC-CcEEEEEccC
Confidence            469999999999999999999987 8999999764

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.44  E-value=0.00014  Score=70.28  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..++|+||||+|.||+.+|.++++ + .+|+|||+++.
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~~-G-~~V~lieK~~~   42 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLPS-H-LRVGLITKDTL   42 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-C-CCEEEEEccCC
Confidence            467999999999999999999865 5 89999999864

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.44  E-value=0.00014  Score=70.56  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.  .+|+|||++..
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~--~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR--ARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC--CCEEEEeCCCC
Confidence            479999999999999999999974  79999999753

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.43  E-value=0.00014  Score=70.66  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++++ +.+|+|||++..
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~   40 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP   40 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            4699999999999999999999864 479999999853

>PRK07233 hypothetical protein; Provisional

Probab=97.43  E-value=0.00017  Score=66.03  Aligned_cols=34  Identities=35%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ++||||+|.+|+++|..|++.+ .+|+|||+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G-~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRG-HEVTVFEADDQL   34 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CcEEEEEeCCCC
Confidence            5899999999999999999987 899999998653

>PRK12839 hypothetical protein; Provisional

Probab=97.42  E-value=0.00017  Score=69.86  Aligned_cols=35  Identities=34%  Similarity=0.470  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.+|+.+|..|++.+ .+|+|||++.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g-~~v~~iek~~   41 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGG-AKVLVVEKAS   41 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence            5799999999999999999999987 8999999874

>PRK07538 hypothetical protein; Provisional

Probab=97.40  E-value=0.00018  Score=66.35  Aligned_cols=33  Identities=27%  Similarity=0.482  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|++|+++|..|++.+ .+|+|+|+.+.
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   34 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRG-IEVVVFEAAPE   34 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CcEEEEEcCCc
Confidence            8999999999999999999986 89999999764

>PLN02815 L-aspartate oxidase

Probab=97.38  E-value=0.00018  Score=70.06  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+  +|+|||.+..
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G--~VvlleK~~~   62 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG--TVAIITKDEP   62 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC--CEEEEECCCC
Confidence            4699999999999999999999986  7999999874

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.38  E-value=0.00022  Score=69.88  Aligned_cols=38  Identities=32%  Similarity=0.355  Sum_probs=34.0

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      +.+++|++|||+|++|+++|..|++. + ++|+|||+-+.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~G-i~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPD-ITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCC-CcEEEEEcCCC
Confidence            45689999999999999999999994 5 99999998764

>TIGR00551 nadB L-aspartate oxidase

Probab=97.37  E-value=0.0002  Score=67.92  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+||||+|.||+.+|.++++.+ . |+|||++..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G-~-V~lleK~~~   35 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQG-R-VIVLSKAPV   35 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCC-C-EEEEEccCC
Confidence            589999999999999999999987 5 999999853

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.37  E-value=0.00017  Score=70.01  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++++ +.+|+|||++..
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~   39 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP   39 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            3689999999999999999999863 479999999753

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.36  E-value=0.0002  Score=68.81  Aligned_cols=35  Identities=34%  Similarity=0.583  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.  .+|+|||++..
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~   41 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPL   41 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCC
Confidence            469999999999999999999985  79999999864

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.33  E-value=0.00028  Score=66.67  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|++|+++|..|.+.+ .+|+|+|++..
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G-~~v~vfE~~~~   44 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREG-HTVVVFEREKQ   44 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcC-CeEEEEecCCC
Confidence            4689999999999999999999987 89999999753

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.32  E-value=0.00032  Score=67.95  Aligned_cols=36  Identities=39%  Similarity=0.448  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..++|+||||+|.+|+.+|.++++.+ .+|+|||+..
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~~g-~~v~l~ek~~   49 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAIAG-LKVLLVERTE   49 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence            35799999999999999999999987 8999999854

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.32  E-value=0.00023  Score=68.02  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+||||+|.||+.+|.++++ + .+|+|||+++.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g-~~V~lveK~~~   36 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-E-YNVIIITKKTK   36 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-C-CCEEEEeccCC
Confidence            7899999999999999999987 5 89999999864

>PLN02568 polyamine oxidase

Probab=97.31  E-value=0.00031  Score=67.70  Aligned_cols=37  Identities=24%  Similarity=0.500  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC----CCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP----NWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~----~~~VLlLEaG~~   94 (224)
                      +..|+||||+|.+|+++|.+|++.+    ..+|+|||+...
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~   44 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR   44 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence            4589999999999999999999865    379999999764

>PLN02676 polyamine oxidase

Probab=97.31  E-value=0.00028  Score=67.06  Aligned_cols=37  Identities=35%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|.+|+.+|.+|++.+..+|+|||+...
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~   61 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDR   61 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCC
Confidence            3689999999999999999999987336999999764

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.30  E-value=0.00029  Score=68.30  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..++|+||||+|.+|+.+|.++++++ .+|+|||+.+
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g-~~v~~iek~~   45 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHG-LKVIVVEKDP   45 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            35799999999999999999999987 8999999864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.27  E-value=0.00028  Score=71.80  Aligned_cols=36  Identities=39%  Similarity=0.619  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++.+ .+|+|||++..
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G-~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHG-ANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCC-CeEEEEecccc
Confidence            4799999999999999999999986 89999999864

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00035  Score=65.48  Aligned_cols=36  Identities=36%  Similarity=0.492  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..|+||||+|.+|+++|+.|...+ ++|++||+-+.
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG-~~v~ilEar~r   41 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAG-YQVQILEARDR   41 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcC-cEEEEEeccCC
Confidence            5799999999999999999999997 99999999654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.26  E-value=0.00032  Score=66.92  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ...||++|||||+||+.+|.+|++.+ .+|+|+|.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~~G-~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAARKG-IRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEec
Confidence            34699999999999999999999987 89999986

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.26  E-value=0.0003  Score=65.74  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCC-----CCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP-----NWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~-----~~~VLlLEaG~~   94 (224)
                      ++||||+|.+|+++|++|++.+     +.+|+|||+...
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r   41 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY   41 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence            5899999999999999999853     379999999654

>PRK05868 hypothetical protein; Validated

Probab=97.24  E-value=0.00035  Score=63.78  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |++|||+|++|+++|..|++.+ ++|+|+|+-+.
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G-~~v~viE~~~~   35 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHG-YSVTMVERHPG   35 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCEEEEcCCCC
Confidence            8999999999999999999987 99999999765

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.24  E-value=0.00034  Score=68.44  Aligned_cols=33  Identities=30%  Similarity=0.504  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHh----cCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLS----ENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLa----e~~~~~VLlLEaG~~   94 (224)
                      |+||||||.||+.+|.+++    +.+ .+|+|||++..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G-~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKG-LKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCC-CeEEEEEccCC
Confidence            8999999999999999998    555 89999999764

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.23  E-value=0.00034  Score=73.04  Aligned_cols=36  Identities=36%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.+.+|.+ .+|+|||+++.
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae~G-a~VivlEK~~~  443 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAASCG-AQVILLEKEAK  443 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEEccCC
Confidence            4699999999999999999999987 89999999754

>KOG2415|consensus

Probab=97.23  E-value=0.00033  Score=65.41  Aligned_cols=38  Identities=34%  Similarity=0.524  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSE-----NPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae-----~~~~~VLlLEaG~~   94 (224)
                      .+++|+||||+|+||+.+|.||-+     +.+.+|.|+|.+..
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~  116 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE  116 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence            468999999999999999999865     34689999999764

>PRK07846 mycothione reductase; Reviewed

Probab=97.22  E-value=0.00037  Score=65.47  Aligned_cols=32  Identities=28%  Similarity=0.696  Sum_probs=27.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|++|..+|.++  .+ .||+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~--~G-~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF--AD-KRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH--CC-CeEEEEeCCC
Confidence            49999999999999998875  35 8999999864

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.22  E-value=0.00037  Score=66.88  Aligned_cols=37  Identities=38%  Similarity=0.590  Sum_probs=34.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|+||||||..|+-+|..++..| ++|+|+|++..-
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RG-l~v~LvE~~D~A   47 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRG-LKVALVEKGDLA   47 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCC-CeEEEEecCccc
Confidence            6899999999999999999999997 999999999753

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.20  E-value=0.0004  Score=65.18  Aligned_cols=34  Identities=29%  Similarity=0.254  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -|++|||+|.+|+.+|..|++.+ .+|.|+|+.+.
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~G-l~V~LiE~rp~   36 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRG-VPVELYEMRPV   36 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEEccCc
Confidence            48999999999999999999987 99999998654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.19  E-value=0.0004  Score=66.26  Aligned_cols=33  Identities=30%  Similarity=0.511  Sum_probs=30.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ..||++|||+|+||..+|.+|++.+ .+|+|+|.
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G-~~v~li~~  243 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKG-LRTAMVAE  243 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEec
Confidence            4699999999999999999999986 89999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.18  E-value=0.00043  Score=64.75  Aligned_cols=34  Identities=41%  Similarity=0.644  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||++|||+|.+|+.+|.+|++.+ ++|+|||+|..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g-~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAG-KKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCC-CCEEEEeCCCc
Confidence            79999999999999999999986 89999999963

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR03452 mycothione_red mycothione reductase

Probab=97.17  E-value=0.00045  Score=64.85  Aligned_cols=32  Identities=28%  Similarity=0.640  Sum_probs=27.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|++|..+|.++  .+ .||+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~--~g-~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF--AD-KRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH--CC-CeEEEEeCCC
Confidence            59999999999999987765  34 8999999853

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=97.17  E-value=0.00049  Score=61.04  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+++|||+|.+|+++|+.|.+.+ .+|+|+|+|.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG-~~vtV~eKg~   34 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAG-REVTVFEKGR   34 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcC-cEEEEEEcCC
Confidence            36899999999999999999997 9999999986

>KOG3855|consensus

Probab=97.13  E-value=0.00045  Score=64.18  Aligned_cols=36  Identities=50%  Similarity=0.880  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~   93 (224)
                      +.||+||||||+.|..+|..|..++   .+||+|||+|.
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~   73 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGD   73 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEeccc
Confidence            5799999999999999999999865   48999999994

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.13  E-value=0.00053  Score=63.89  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|||+|.+|+++|.+|++.+ .+|+|||+.+.
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G-~~v~vlE~~~~   33 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAG-HTPIVLEARDV   33 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            4899999999999999999987 89999999753

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.12  E-value=0.00051  Score=66.57  Aligned_cols=37  Identities=38%  Similarity=0.534  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+||+||||+|.||+.+|.++++.+ .+|+|||.....
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g-~~V~l~~K~~~~   41 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAG-LKVALLSKAPPK   41 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcC-CcEEEEEccccC
Confidence            5799999999999999999999998 999999998643

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.11  E-value=0.00055  Score=64.22  Aligned_cols=32  Identities=34%  Similarity=0.585  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||||+|+||..+|.+|++.+ .+|+|||++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g-~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNG-KNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CcEEEEECCc
Confidence            6899999999999999999986 8999999964

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.00061  Score=64.08  Aligned_cols=36  Identities=19%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~   93 (224)
                      .+.+|++|||+|.+|..+|.+|.+.+ .. ++++|+..
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g-~~~~~i~Ek~~   42 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAG-VPDFVIFEKRD   42 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcC-CCcEEEEEccC
Confidence            46799999999999999999999987 55 99999985

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.10  E-value=0.00069  Score=69.60  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|+||+.+|..|++.+ .+|+|+|+++.
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G-~~V~liD~~~~  197 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAG-ARVILVDEQPE  197 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence            4699999999999999999999986 99999998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.09  E-value=0.00052  Score=63.70  Aligned_cols=28  Identities=50%  Similarity=0.592  Sum_probs=25.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLL   89 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlL   89 (224)
                      |+||||+|.|||.+|..+|+.+ .+|+|+
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G-~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMG-AKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT---EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEE
Confidence            8999999999999999999997 899999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=97.07  E-value=0.00069  Score=62.35  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|.+|+++|..|++.+..+|.|+|+.+.
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            5899999999999999999987679999999765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.06  E-value=0.00059  Score=65.24  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|.++++   .+|+|||++..
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa~---~~V~lleK~~~   41 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLAP---RPVVVLSPAPL   41 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhCc---CCEEEEECCCC
Confidence            57999999999999999999973   59999999875

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.05  E-value=0.00065  Score=66.30  Aligned_cols=33  Identities=39%  Similarity=0.476  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||+||||+|.||+.+|..+++.+ .+|+|||..+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G-~~v~Lie~~~   33 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMG-AKTLLLTLNL   33 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCC-CCEEEEeccc
Confidence            79999999999999999999987 8999999864

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.02  E-value=0.0008  Score=61.72  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      =+++|||+|++|+++|.-|++.+ ++|.|+|+-+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G-~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARG-WAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEecCCc
Confidence            46899999999999999999986 99999998764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.00  E-value=0.00084  Score=66.27  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+..+++|||+|++|+++|..|++.+ ++|.|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~G-i~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKG-FDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcC-CeEEEEeccc
Confidence            46799999999999999999999987 9999999975

>TIGR00275 flavoprotein, HI0933 family

Probab=96.97  E-value=0.00053  Score=63.42  Aligned_cols=31  Identities=39%  Similarity=0.599  Sum_probs=28.6

Q ss_pred             EEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          63 IVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        63 IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||||+|++|+++|.+|++.+ .+|+|||+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G-~~V~llEk~~~   31 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREG-LSVLLLEKNKK   31 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcC-CcEEEEecCcc
Confidence            69999999999999999987 89999999764

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>KOG0685|consensus

Probab=96.92  E-value=0.001  Score=62.72  Aligned_cols=38  Identities=37%  Similarity=0.471  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ...-+||||+|.||..+|.||-|++...|+++|+..+-
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            45689999999999999999999888899999998653

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.89  E-value=0.0011  Score=62.23  Aligned_cols=33  Identities=33%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |++|||+|.+|+.+|..|++.+ .+|+|+|..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G-~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAG-VPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCC-CcEEEEecccc
Confidence            7999999999999999999987 99999997554

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>KOG2665|consensus

Probab=96.89  E-value=0.00076  Score=61.08  Aligned_cols=38  Identities=42%  Similarity=0.636  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHh-cCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLS-ENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLa-e~~~~~VLlLEaG~~   94 (224)
                      .+.||.||||+|.-|+..|.+|+ ++|.++|+|||+-..
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~   84 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKS   84 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhh
Confidence            46799999999999999999998 467899999999754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.88  E-value=0.0012  Score=67.89  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+|++|||||+||..+|..|++.+ .+|+|+|+.+
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G-~~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAG-HPVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEeccc
Confidence            4589999999999999999999987 8999999864

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12831 putative oxidoreductase; Provisional

Probab=96.88  E-value=0.0013  Score=62.16  Aligned_cols=35  Identities=29%  Similarity=0.370  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...|++|||+|+||+.+|.+|++.+ .+|+|+|+..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G-~~V~v~e~~~  173 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMG-YDVTIFEALH  173 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC-CeEEEEecCC
Confidence            5689999999999999999999987 8999999854

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.84  E-value=0.0015  Score=61.60  Aligned_cols=39  Identities=31%  Similarity=0.400  Sum_probs=30.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      .++||+||+|.|..-|++|..||..| +|||.|++.....
T Consensus         2 ~~~yDviI~GTGl~esila~als~~G-kkVLhiD~n~yYG   40 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRSG-KKVLHIDRNDYYG   40 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSSC
T ss_pred             CccceEEEECCCcHHHHHHHHHHhcC-CEEEecCCCCCcC
Confidence            47899999999999999999999997 8999999987653

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.83  E-value=0.0015  Score=61.64  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|++|..+|..|++.+ .+|+|+|+.+.
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G-~~V~vie~~~~  177 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAG-HKVTVFERADR  177 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence            4689999999999999999999987 89999998754

>KOG2820|consensus

Probab=96.81  E-value=0.0011  Score=60.24  Aligned_cols=37  Identities=35%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+..|+||||+|.-|+.+|..|+.++ .++|+||+=+.
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~g-~killLeqf~~   41 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKRG-DKILLLEQFPL   41 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhcC-CeEEEEeccCC
Confidence            36799999999999999999999998 89999999764

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.80  E-value=0.0028  Score=45.08  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=31.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      ++|||+|..|+-+|..|++.+ .+|.|||+.+...
T Consensus         2 vvViGgG~ig~E~A~~l~~~g-~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAELG-KEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHHTT-SEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHhC-cEEEEEeccchhh
Confidence            689999999999999999987 8999999998754

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.78  E-value=0.0017  Score=61.03  Aligned_cols=35  Identities=29%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+|++|||+|++|+.+|..|++.+ .+|+|+|+.+
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G-~~V~vie~~~  166 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAG-HSVTVFEALH  166 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence            4689999999999999999999986 8999999864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.74  E-value=0.0013  Score=64.19  Aligned_cols=31  Identities=39%  Similarity=0.514  Sum_probs=29.1

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||||+|.||+.+|.++++.+ .+|+|||++.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G-~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELG-YHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcC-CCEEEEEecC
Confidence            589999999999999999987 8999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.73  E-value=0.0013  Score=62.00  Aligned_cols=35  Identities=34%  Similarity=0.538  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCC--CCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP--NWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~--~~~VLlLEaG~~~   95 (224)
                      |+||||+|+||.++|..|+...  .++|+|||.....
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            7999999999999999999853  3799999998654

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02612 phytoene desaturase

Probab=96.69  E-value=0.0023  Score=62.05  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...+++|||+|.+|+++|.+|++.+ .+|+|+|+..
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g-~~~~~~e~~~  126 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAG-HKPILLEARD  126 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcC-CeEEEEecCC
Confidence            4589999999999999999999987 8999999964

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=96.69  E-value=0.0021  Score=60.59  Aligned_cols=32  Identities=25%  Similarity=0.437  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      |+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g-~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLG-ADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCC-CeEEEEEccC
Confidence            7999999999999999999986 8999999865

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.0018  Score=61.45  Aligned_cols=32  Identities=31%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+|+|.||+.+|..|++.| .+|.|+|++..
T Consensus         3 Vai~GaG~AgL~~a~~La~~g-~~vt~~ea~~~   34 (485)
T COG3349           3 VAIAGAGLAGLAAAYELADAG-YDVTLYEARDR   34 (485)
T ss_pred             EEEEcccHHHHHHHHHHHhCC-CceEEEeccCc
Confidence            789999999999999999998 99999999865

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.66  E-value=0.0024  Score=59.85  Aligned_cols=36  Identities=31%  Similarity=0.493  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|++|+.+|..|++.+ .+|+|+|+.+.
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g-~~V~lie~~~~  174 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKG-YDVTIFEARDK  174 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CeEEEEccCCC
Confidence            4589999999999999999999987 89999998754

>KOG0405|consensus

Probab=96.65  E-value=0.002  Score=59.08  Aligned_cols=35  Identities=37%  Similarity=0.624  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .++|||.|||+|++|...|+|-++.+ .||.|+|+.
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~G-Akv~l~E~~   52 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHG-AKVALCELP   52 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcC-ceEEEEecC
Confidence            35899999999999999999999987 899999998

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=96.64  E-value=0.0024  Score=58.16  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||++|||+|.||.+.|.+|.+.| +++.+|-.|..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~G-k~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAG-KRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcC-CcEEEEeCChh
Confidence            699999999999999999999998 89999999975

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.61  E-value=0.0025  Score=60.35  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|||+|.+|+.+|.+|++.+ .+|+|+|+...
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G-~~v~v~E~~~~   33 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAG-HEVDIYESRSF   33 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CcEEEEEecCC
Confidence            4799999999999999999987 89999999654

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02529 lysine-specific histone demethylase 1

Probab=96.60  E-value=0.0025  Score=63.65  Aligned_cols=36  Identities=36%  Similarity=0.477  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...|+||||+|.+|+.+|..|++.+ .+|+|||+...
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g-~~v~v~E~~~~  194 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFG-FKVVVLEGRNR  194 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcC-CcEEEEecCcc
Confidence            5689999999999999999999987 89999999643

>KOG2614|consensus

Probab=96.60  E-value=0.0025  Score=59.17  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +-++||||||.+|++.|.-|++.+ ++|+|+|.-.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G-~~v~VlE~~e   35 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKG-IDVVVLESRE   35 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcC-CeEEEEeecc
Confidence            468999999999999999999987 9999999944

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.56  E-value=0.0029  Score=59.80  Aligned_cols=37  Identities=30%  Similarity=0.692  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~   94 (224)
                      ++||+|+||+|..|++++.-|.+ .|.++|.|+|+-..
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~   39 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDS   39 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCc
Confidence            57999999999999999999998 67899999999764

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.51  E-value=0.0029  Score=63.68  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...++||||+|.+|+.+|.+|++.+ .+|+|+|+...
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g-~~v~v~E~~~r  272 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMG-FKVVVLEGRAR  272 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecccc
Confidence            5689999999999999999999986 89999999653

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.47  E-value=0.0036  Score=61.54  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|+||+.+|..|++.+ .+|+|+|+.+.
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G-~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNG-VAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            4579999999999999999999987 89999998753

>KOG1399|consensus

Probab=96.47  E-value=0.003  Score=59.72  Aligned_cols=36  Identities=28%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-+++|||+|+||+++|..|.+.+ ..|.++|+..+.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g-~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREG-HEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCC-CCceEEEecCCc
Confidence            578999999999999999999986 999999998753

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.46  E-value=0.0035  Score=62.56  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...|++|||||+||+.+|..|++.+ .+|+|+|+.+
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G-~~V~v~e~~~  464 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRG-YDVTVFEALH  464 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            4679999999999999999999987 8999999843

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=96.44  E-value=0.0034  Score=64.78  Aligned_cols=36  Identities=25%  Similarity=0.168  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||||+||+.+|..|++.+ .+|+|+|++..
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G-~~VtV~E~~~~  464 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYG-VDVTVYEALHV  464 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Confidence            3579999999999999999999987 89999999753

>KOG4716|consensus

Probab=96.40  E-value=0.003  Score=57.76  Aligned_cols=35  Identities=37%  Similarity=0.530  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||.||||+|++|+..|.+.+..+ .+|++|+.=.
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G-~kV~~lDfV~   52 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLG-AKVACLDFVK   52 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcC-CcEEEEeecc
Confidence            4799999999999999999999987 8999999753

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.36  E-value=0.0044  Score=58.47  Aligned_cols=33  Identities=39%  Similarity=0.643  Sum_probs=29.7

Q ss_pred             EEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      ++|||+|.+|+.+|.+|.+. |+..|.|+|++.+
T Consensus         3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r   36 (444)
T COG1232           3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDR   36 (444)
T ss_pred             EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            79999999999999999985 4689999999854

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.36  E-value=0.0026  Score=59.13  Aligned_cols=30  Identities=43%  Similarity=0.499  Sum_probs=27.9

Q ss_pred             EECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          64 VVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        64 VVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |||+|.+|+.+|.+++|.+ .+|+|||+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~~G-a~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAG-ASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHhCC-CcEEEEeCCCC
Confidence            7999999999999999997 89999999763

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=96.32  E-value=0.0041  Score=62.35  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      +++|||+|+||+++|..|++.+ +++|+|||+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            6899999999999999999872 599999998764

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.32  E-value=0.0045  Score=63.67  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...+++|||+|+||..+|..|++.+ .+|+|+|+.+
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G-~~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAG-HPVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CeEEEEeccc
Confidence            4579999999999999999999987 8999999865

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.26  E-value=0.0049  Score=63.23  Aligned_cols=35  Identities=29%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...+++|||||+||+.+|..|++.+ .+|+|+|+..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G-~~VtVfE~~~  339 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEG-FPVTVFEAFH  339 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CeEEEEeeCC
Confidence            3578999999999999999999987 8999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.23  E-value=0.0067  Score=54.86  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ...+++|||+|++|+.+|.+|++.+ .+|.|+|+.+..
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~~~   53 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLG-YEVHVYDKLPEP   53 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCCC
Confidence            3469999999999999999999986 899999998653

>KOG2960|consensus

Probab=96.21  E-value=0.0015  Score=56.39  Aligned_cols=35  Identities=37%  Similarity=0.626  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHh-cCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLS-ENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLa-e~~~~~VLlLEaG   92 (224)
                      .+-|+||||+|.+|+.+|+..+ .+|+++|.+||+.
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S  110 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS  110 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence            4679999999999999999999 5789999999984

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.21  E-value=0.0061  Score=60.01  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|++|+.+|..|++.+ .+|+|+|+...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G-~~Vtv~e~~~~  227 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKG-HDVTIFDANEQ  227 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            4579999999999999999999987 89999998754

>PLN02487 zeta-carotene desaturase

Probab=96.21  E-value=0.0061  Score=59.25  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+++|||+|.+|+.+|.+|++.+ .+|+|+|+.+.
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g-~~v~i~E~~~~  109 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRPF  109 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CeeEEEecCCC
Confidence            469999999999999999999987 89999999664

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.05  E-value=0.0058  Score=58.83  Aligned_cols=36  Identities=42%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.||+||||+|-||+-+|...|+-+ .++|||--..+
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARmG-~ktlLlT~~~d   38 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARMG-AKTLLLTLNLD   38 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhccC-CeEEEEEcCCC
Confidence            4699999999999999999999987 89999876543

>PLN03000 amine oxidase

Probab=96.02  E-value=0.0083  Score=60.88  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...|+||||+|.+|+.+|.+|.+.+ .+|+|||+..+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G-~~V~VlE~~~r  218 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFG-FKVTVLEGRKR  218 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCC-CcEEEEEccCc
Confidence            4689999999999999999999986 89999999765

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.01  E-value=0.01  Score=56.74  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~~   95 (224)
                      ....++|||||+||+.+|..|++ ..+.+|.|+|+-+..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            45789999999999999999986 234899999998753

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=95.99  E-value=0.0087  Score=58.16  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC---CCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP---NWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~---~~~VLlLEaG~~   94 (224)
                      .-+++|||||.||+++|.+|++++   +.+|.|||+...
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~   60 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV   60 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence            468999999999999999999963   479999999653

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.97  E-value=0.0099  Score=56.18  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|++|+.+|..|++.+ .+|+++|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G-~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAG-VQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence            4589999999999999999999986 89999998753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.93  E-value=0.0095  Score=57.44  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -++|||+|++|+++|..|.|.+ ..|.++|+..+
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g-~~~~~fE~~~~   35 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEG-LEVTCFEKSDD   35 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT--EEEEEESSSS
T ss_pred             EEEEECccHHHHHHHHHHHHCC-CCCeEEecCCC
Confidence            3799999999999999999987 99999999764

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.91  E-value=0.01  Score=56.35  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+++|||+|++|+.+|..|++.+ .+|+|+|+.+.
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g-~~V~v~e~~~~  177 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAG-HTVTVFEREDR  177 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence            479999999999999999999986 89999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02976 amine oxidase

Probab=95.90  E-value=0.0096  Score=63.21  Aligned_cols=35  Identities=37%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+|++|||+|++|+.+|.+|++.+ .+|+|||+..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G-~~V~VlEa~~  726 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQG-FSVTVLEARS  726 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCC-CcEEEEeecc
Confidence            4589999999999999999999986 8999999853

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=95.88  E-value=0.01  Score=56.53  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .=+++|||+|.||..+|..|++.| .+|.|+|.-+.
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G-~~v~LVEKeps  158 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMG-FKVYLVEKEPS  158 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcC-CeEEEEecCCc
Confidence            457999999999999999999998 99999999764

>KOG1335|consensus

Probab=95.77  E-value=0.01  Score=55.17  Aligned_cols=33  Identities=33%  Similarity=0.568  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .+||+||||+|++|-++|.+-++.+ ++...+|.
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlG-lkTacvEk   70 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLG-LKTACVEK   70 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhc-ceeEEEec
Confidence            4799999999999999999999997 99999998

>KOG0042|consensus

Probab=95.72  E-value=0.0046  Score=59.39  Aligned_cols=38  Identities=32%  Similarity=0.542  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+||++|||||+.|+-+|.--+-.| +||.|+|+|..-
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~TRG-LktaLVE~~DF~  102 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAATRG-LKTALVEAGDFA  102 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhccc-ceeEEEeccccc
Confidence            35699999999999999999888877 999999999753

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.70  E-value=0.013  Score=57.59  Aligned_cols=36  Identities=22%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|++|+.+|..|++.+ .+|+++|+.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G-~~Vtv~e~~~~  344 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAG-VQVDVFDRHPE  344 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcC-CcEEEEeCCCC
Confidence            3688999999999999999999987 79999999874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.69  E-value=0.013  Score=54.37  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      .+||||+|+||..+|.+|.+.+ +.+|+|+|+.+.
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~   36 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI   36 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence            4899999999999999998853 469999999875

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.68  E-value=0.011  Score=56.25  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      |++|||||.||+++|..|++.  .+|+||-+++..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~--~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS--FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC--CcEEEEeCCCCC
Confidence            999999999999999999985  899999998754

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=95.55  E-value=0.02  Score=51.70  Aligned_cols=35  Identities=23%  Similarity=0.531  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHhcC--CCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~~   95 (224)
                      .+||||+|+||..+|.+|.++  ++.+|+|+|+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            379999999999999999643  45899999988653

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.54  E-value=0.018  Score=52.87  Aligned_cols=37  Identities=30%  Similarity=0.440  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~~   95 (224)
                      ..++||||+|+||..+|.+|.+.+ +.+|+|+++....
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            357999999999999999999864 3589999988653

>KOG4254|consensus

Probab=95.51  E-value=0.012  Score=55.58  Aligned_cols=37  Identities=35%  Similarity=0.440  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+||.||||+|..|+++|..|++-+ .+|.|+|+-..
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g-~~V~vlerrhv   48 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYG-QSVAVLERRHV   48 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcC-cceEEEEEeee
Confidence            46899999999999999999999986 89999999743

>PRK13984 putative oxidoreductase; Provisional

Probab=95.43  E-value=0.02  Score=55.63  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|++|..+|..|.+.+ .+|.|+|+.+.
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G-~~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMG-YEVTVYESLSK  317 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            4678999999999999999999987 89999998763

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.43  E-value=0.021  Score=53.38  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      .+||||+|+||..+|.+|.+. ++.+|+|+|+....
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            589999999999999999874 45799999999753

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.42  E-value=0.016  Score=59.41  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ....++|||+|+||..+|..|+..| .+|.|+|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~G-h~Vtv~E~~  415 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSG-HNVTAIDGL  415 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCC-CeEEEEccc
Confidence            4578999999999999999999987 899999984

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=95.40  E-value=0.011  Score=53.77  Aligned_cols=36  Identities=33%  Similarity=0.392  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .||+|+||.|++++.+|..|.|.+..+++.||+-+.
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~   37 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS   37 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence            599999999999999999999987799999998764

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.32  E-value=0.023  Score=54.46  Aligned_cols=37  Identities=16%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..-+.|||||+||+.+|.+|....+.+|.|+|+-+..
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            4569999999999999999875435899999998754

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=95.25  E-value=0.021  Score=53.89  Aligned_cols=41  Identities=29%  Similarity=0.484  Sum_probs=36.0

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcC----CCCeEEEeecCCCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSEN----PNWKVLLLEAGGHET   96 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~----~~~~VLlLEaG~~~~   96 (224)
                      +...||+||||+|++|...|.+|+.+    +..+|++||.|.+..
T Consensus        15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~   59 (486)
T COG2509          15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE   59 (486)
T ss_pred             hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence            45689999999999999999999975    468999999998743

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=95.25  E-value=0.023  Score=54.80  Aligned_cols=35  Identities=34%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..-+++|||+|++|+.+|..|++.+ .+|+|+|+.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G-~~V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMG-HAVTIFEAGP  170 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            4568999999999999999999987 7999999754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=95.19  E-value=0.028  Score=52.31  Aligned_cols=37  Identities=19%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +..++||||+|.||..+|.+|... +.+|+|||.-+..
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~   45 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM   45 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence            467999999999999999999754 4899999987653

>KOG2853|consensus

Probab=95.19  E-value=0.021  Score=52.53  Aligned_cols=41  Identities=24%  Similarity=0.458  Sum_probs=34.1

Q ss_pred             hcCCcccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCCC
Q psy7388          55 KLLMEYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGHE   95 (224)
Q Consensus        55 ~~~~~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~~   95 (224)
                      ....+.|++|||+|-.|+.+|.-|-|   +.+.+|+|+|+-.-.
T Consensus        82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            34568999999999999999988766   445999999998644

>PRK09897 hypothetical protein; Provisional

Probab=95.13  E-value=0.027  Score=54.41  Aligned_cols=34  Identities=18%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~   93 (224)
                      .+++|||+|++|..+|.+|.+.. ..+|.|+|.+.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            47999999999999999998743 37999999854

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.93  E-value=0.042  Score=50.03  Aligned_cols=35  Identities=14%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~   94 (224)
                      .|+||||+|+||..+|.+|.+ .++.+|.||++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            489999999999999999987 34578999987653

>KOG2311|consensus

Probab=94.44  E-value=0.037  Score=52.83  Aligned_cols=34  Identities=35%  Similarity=0.509  Sum_probs=27.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ...||+||||+|-|||-+|..-|+-| -+.|||--
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~G-a~TlLlT~   59 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLG-ARTLLLTH   59 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcC-CceEEeec
Confidence            46899999999999999999888877 56666543

>KOG3851|consensus

Probab=94.41  E-value=0.037  Score=50.46  Aligned_cols=38  Identities=26%  Similarity=0.403  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      ..+|.++|||+|++|+.+|+++.++ +.-+|.+||--.+
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~   75 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED   75 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence            4689999999999999999999984 4468999997664

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=94.27  E-value=0.054  Score=43.47  Aligned_cols=31  Identities=23%  Similarity=0.522  Sum_probs=26.9

Q ss_pred             EEECCChHHHHHHHHHhcCC----CCeEEEeecCC
Q psy7388          63 IVVGGGSAGNVVANRLSENP----NWKVLLLEAGG   93 (224)
Q Consensus        63 IVVGsG~aG~v~A~rLae~~----~~~VLlLEaG~   93 (224)
                      .|||+|++|..++.+|.+..    ..+|.|+|..+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            49999999999999999873    58899999843

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.85  E-value=0.072  Score=49.81  Aligned_cols=37  Identities=35%  Similarity=0.601  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC------------CCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP------------NWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~------------~~~VLlLEaG~~~   95 (224)
                      .-+++|||+|+.|.-+|..|++.-            +.+|.|+|+|+.-
T Consensus       155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            468999999999999999998821            2499999999863

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=93.79  E-value=0.083  Score=45.31  Aligned_cols=33  Identities=33%  Similarity=0.613  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||||+|.-|..+|..|++.+ ..|+++|.-+.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~~   34 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEG-HNVVLIDRDEE   34 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCC-CceEEEEcCHH
Confidence            5899999999999999999997 79999998764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=93.64  E-value=0.1  Score=41.05  Aligned_cols=31  Identities=26%  Similarity=0.537  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|+|+|..|+.+|.+|++.+ .+|.++-+++
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g-~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAG-HDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTT-CEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCC-CceEEEEccc
Confidence            479999999999999999976 8999998887

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>KOG1276|consensus

Probab=93.62  E-value=0.1  Score=49.13  Aligned_cols=37  Identities=32%  Similarity=0.440  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      ..-+++|||+|.+|+.+|..|+.. ++..|.|.|++++
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~R   47 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPR   47 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCc
Confidence            457899999999999999999985 4567888999875

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=93.50  E-value=0.1  Score=46.78  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=32.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -+++|||+|..|+.+|..|.+.+ .+|.++|+.+..
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G-~~v~l~e~~~~~  171 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRG-KKVTLIEAADRL  171 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcC-CeEEEEEccccc
Confidence            69999999999999999999998 999999999864

>KOG4405|consensus

Probab=93.41  E-value=0.084  Score=49.50  Aligned_cols=39  Identities=28%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +.++||+||||.|.-=+++|..-++.| .+||-|+.-+.+
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrsG-~sVLHlDsn~yY   43 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRSG-SSVLHLDSNEYY   43 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhcC-CceEeccCcccc
Confidence            457899999999999999999999987 899999987643

>KOG1439|consensus

Probab=93.31  E-value=0.051  Score=50.57  Aligned_cols=38  Identities=32%  Similarity=0.386  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++||+||+|.|--=|+++.+|+-++ .+||.+++-+..
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~~g-kkVLhiDrN~yY   39 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSVDG-KKVLHIDRNDYY   39 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeeecC-cEEEEEeCCCCC
Confidence            35799999999999999999999987 889999997654

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=0.05  Score=50.16  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=28.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ++.||++|||+|+||..+|-.-++++-+.=++-|+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aer  243 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAER  243 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHhhcchhhhhhhh
Confidence            46799999999999999999999987333455565

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=93.02  E-value=0.12  Score=48.25  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGHET   96 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~~~   96 (224)
                      --+||||||.+|..+|.+|..+. +.+|.|||+-....
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl   41 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL   41 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence            35899999999999999999974 58899999987643

>KOG1800|consensus

Probab=92.78  E-value=0.16  Score=47.27  Aligned_cols=38  Identities=29%  Similarity=0.291  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHET   96 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~~   96 (224)
                      ..-++|||||+||.-.|.+|-.+ ++.+|-+.|.-+.+.
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF   58 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF   58 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence            45899999999999999999884 679999999987643

>KOG2755|consensus

Probab=92.49  E-value=0.1  Score=46.41  Aligned_cols=34  Identities=44%  Similarity=0.761  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~   94 (224)
                      .|||||+|.||...|..|+. .|+-.||||-+.+.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~   35 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF   35 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence            38999999999999999997 45678999998763

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.44  E-value=0.12  Score=47.38  Aligned_cols=34  Identities=26%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      --+.|||+|-||+-+|+++++.| .+|.|-|.-+.
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~G-v~V~L~EMRp~   37 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRG-VPVILYEMRPV   37 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcC-CcEEEEEcccc
Confidence            35789999999999999999997 99999998764

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=92.44  E-value=0.19  Score=46.13  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|||+++..
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~~  179 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRR-CKVTVIELAATV  179 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCcc
Confidence            36999999999999999999886 899999998753

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=92.40  E-value=0.14  Score=48.72  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .-.+-|||||+||+.+|..|+..+ .+|++.|+=+.
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G-~~Vtv~e~~~~  157 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAG-HDVTVFERVAL  157 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCC-CeEEEeCCcCC
Confidence            378999999999999999999997 89999988653

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=92.28  E-value=0.2  Score=46.34  Aligned_cols=37  Identities=24%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..||+||+|.|.-=|+++.+|+-++ .+||+|++-...
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~-k~VlhiD~Nd~Y   41 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDG-KNVLHIDKNDYY   41 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcC-ceEEEEeCCCcc
Confidence            3699999999999999999999986 899999997654

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=92.24  E-value=0.13  Score=47.34  Aligned_cols=34  Identities=32%  Similarity=0.378  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .-++-|||+|.+|+.+|.-|+..  -+|.|.||+..
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r--hdVTLfEA~~r   41 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR--HDVTLFEADRR   41 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc--cceEEEecccc
Confidence            46889999999999999999985  58999999875

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=92.01  E-value=0.21  Score=46.94  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|.+|+-+|..|++.+ .+|.|||+++.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g-~~Vtli~~~~~  214 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFG-VEVTVVEAADR  214 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEEecCc
Confidence            36899999999999999999986 89999999875

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=91.96  E-value=0.23  Score=39.92  Aligned_cols=31  Identities=29%  Similarity=0.435  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|+|+|..|..+|.-|++++ .+|.|..+-+
T Consensus         2 I~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADNG-HEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence            579999999999999999998 8999987643

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=91.80  E-value=0.23  Score=46.29  Aligned_cols=34  Identities=24%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -+++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtli~~~~~  204 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLG-SKVTVIEMLDR  204 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCC
Confidence            47999999999999999999986 89999999875

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=91.76  E-value=0.26  Score=44.84  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       142 ~~vvViGgG~~g~e~A~~L~~~g-~~Vtlv~~~~~  175 (377)
T PRK04965        142 QRVLVVGGGLIGTELAMDLCRAG-KAVTLVDNAAS  175 (377)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC-CeEEEEecCCc
Confidence            46899999999999999999886 89999999875

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=91.61  E-value=0.27  Score=46.13  Aligned_cols=34  Identities=29%  Similarity=0.377  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~~~~~l  205 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSRLG-TKVTIVEMAPQL  205 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCCc
Confidence            6999999999999999999876 899999998753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=91.58  E-value=0.27  Score=45.73  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~~g-~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNKLG-SKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCcc
Confidence            5999999999999999999976 899999998743

>KOG2844|consensus

Probab=91.49  E-value=0.22  Score=49.33  Aligned_cols=37  Identities=38%  Similarity=0.524  Sum_probs=30.7

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGG   93 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~   93 (224)
                      +....|++|||+|.+||.+|..|+..+ .| ++++|+-.
T Consensus        36 ~~~~A~vvViggG~~g~~~~yhlak~g-~k~avlle~~~   73 (856)
T KOG2844|consen   36 LPSTADVVVIGGGSLGCSTAYHLAKRG-MKGAVLLERSR   73 (856)
T ss_pred             CCCcccEEEEcCCchhHHHHHHHHHcc-ccceEEEeeee
Confidence            346799999999999999999999987 56 66666643

>KOG2404|consensus

Probab=91.48  E-value=0.2  Score=45.91  Aligned_cols=32  Identities=38%  Similarity=0.583  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+||||+|.||+.++++|-..+ -.|+|||.-.
T Consensus        11 pvvVIGgGLAGLsasn~iin~g-g~V~llek~~   42 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKG-GIVILLEKAG   42 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcC-CeEEEEeccC
Confidence            6999999999999999999987 4599999754

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.24  E-value=0.4  Score=35.85  Aligned_cols=32  Identities=22%  Similarity=0.506  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |||+|.|..|-.+|..|.+. +.+|+++|.-+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcH
Confidence            69999999999999999995 479999998864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.98  E-value=0.32  Score=45.94  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|||+++..
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~~G-~~Vtlv~~~~~i  209 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHRLG-SEVDVVEMFDQV  209 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CCEEEEecCCCC
Confidence            6899999999999999999987 899999998753

>KOG2495|consensus

Probab=90.97  E-value=0.11  Score=48.89  Aligned_cols=37  Identities=41%  Similarity=0.647  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-------------CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE-------------NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae-------------~~~~~VLlLEaG~~   94 (224)
                      .---++|||||+.|.-.|.+|+.             ....+|.||||.+.
T Consensus       217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~  266 (491)
T KOG2495|consen  217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH  266 (491)
T ss_pred             heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence            34679999999999999999987             23479999999984

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.94  E-value=0.32  Score=43.41  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++.+ .+|.++.++.
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G-~~V~lv~r~~   35 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAG-LPVRLILRDR   35 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCeEEEEech
Confidence            5899999999999999999987 7899999975

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=90.87  E-value=0.4  Score=39.08  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=27.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .-.++|||+|.++.-+|..|++.+ .+|.++=+.+
T Consensus       167 ~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~R~~  200 (203)
T PF13738_consen  167 GKRVVVVGGGNSAVDIAYALAKAG-KSVTLVTRSP  200 (203)
T ss_dssp             TSEEEEE--SHHHHHHHHHHTTTC-SEEEEEESS-
T ss_pred             CCcEEEEcChHHHHHHHHHHHhhC-CEEEEEecCC
Confidence            357999999999999999999997 8999987765

...

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=90.85  E-value=0.34  Score=45.51  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|||+++.
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~~~~~  200 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHGLG-SETHLVIRHER  200 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Confidence            6899999999999999999986 89999999875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=90.79  E-value=0.36  Score=49.27  Aligned_cols=35  Identities=14%  Similarity=0.352  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcC---CCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG~~~   95 (224)
                      .+||||+|+||..+|.+|.+.   .+.+|.|+++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            699999999999999999763   34799999998764

>PRK07846 mycothione reductase; Reviewed

Probab=90.75  E-value=0.36  Score=45.34  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|||+++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G-~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALG-VRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCcc
Confidence            47899999999999999999986 899999998753

>TIGR02053 MerA mercuric reductase

Probab=90.68  E-value=0.35  Score=45.26  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g-~~Vtli~~~~~  200 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLG-SEVTILQRSDR  200 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCc
Confidence            46899999999999999999986 79999999864

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=90.51  E-value=0.34  Score=48.88  Aligned_cols=34  Identities=18%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHhcC--CCCeEEEeecCCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGHE   95 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~~   95 (224)
                      +||||+|+||..+|.+|.+.  .+.+|.|+|+.+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            58999999999999998764  34799999998764

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=90.30  E-value=0.45  Score=39.29  Aligned_cols=32  Identities=22%  Similarity=0.430  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +-|||+|..|.-+|..++..| .+|.|++.-+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAG-YEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence            579999999999999999997 99999998653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.26  E-value=0.35  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC--CCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENP--NWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~--~~~VLlLEaG~~   94 (224)
                      ++++|||+|++|..+|..|...+  ..+|-|+|.-+.
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~   38 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN   38 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence            78999999999999999999853  234899987653

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=90.17  E-value=0.44  Score=42.46  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++.+ ..|.++-++.
T Consensus         7 ~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~   38 (313)
T PRK06249          7 RIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD   38 (313)
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence            5899999999999999999987 7999998875

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=90.06  E-value=0.46  Score=44.78  Aligned_cols=35  Identities=17%  Similarity=0.175  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      =.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G-~~Vtlie~~~~i  209 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLG-AQVTVVEYLDRI  209 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCCCC
Confidence            35899999999999999999987 899999998753

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.97  E-value=0.46  Score=44.44  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~~g-~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYASLG-AEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCCc
Confidence            5899999999999999999886 899999998753

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=89.88  E-value=0.47  Score=43.86  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtli~~~~~  171 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERG-KNVTLIHRSER  171 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CcEEEEECCcc
Confidence            47899999999999999999876 79999999875

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=89.86  E-value=0.47  Score=44.28  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|||+++.
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g-~~Vtli~~~~~  209 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALG-VKVTLINTRDR  209 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence            35899999999999999999987 89999999875

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=89.83  E-value=0.45  Score=44.42  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~~g-~~Vtli~~~~~  182 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYERG-LHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CcEEEEecccc
Confidence            6899999999999999999986 89999999864

>PRK06370 mercuric reductase; Validated

Probab=89.82  E-value=0.47  Score=44.47  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G-~~Vtli~~~~~~  206 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFG-SEVTVIERGPRL  206 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCCC
Confidence            36799999999999999999986 799999998753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=89.82  E-value=0.47  Score=44.56  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G-~~Vtlv~~~~~  206 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYG-VDVTIVEFLDR  206 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence            6899999999999999999986 79999999864

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=89.75  E-value=0.46  Score=44.52  Aligned_cols=39  Identities=28%  Similarity=0.244  Sum_probs=35.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+.+|+|.||-|++-+.+|.-|.|....++|.||+-+..
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            357999999999999999999999887899999998854

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.56  E-value=0.52  Score=41.21  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +.|||+|..|+.+|.+|++.+ .+|.++.+
T Consensus         3 I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r   31 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQAG-HDVTLVAR   31 (304)
T ss_pred             EEEECCCHHHHHHHHHHHhCC-CeEEEEEC
Confidence            789999999999999999987 78999987

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.32  E-value=0.51  Score=41.38  Aligned_cols=29  Identities=34%  Similarity=0.492  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +.|||+|..|+.+|..|++++ .+|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~~g-~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLEAG-RDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHHCC-CceEEEec
Confidence            689999999999999999986 78999888

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=89.22  E-value=0.64  Score=44.15  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      -.+|||+|..|+-+|.-++.-| .+|.|||+++...
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG-~~VTiie~~~~iL  209 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALG-SKVTVVERGDRIL  209 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCCC
Confidence            3899999999999999999987 8999999998643

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=89.22  E-value=0.57  Score=43.74  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g-~~Vtli~~~~~  203 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLG-VKVTVFERGDR  203 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCC
Confidence            36899999999999999999986 89999999875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=88.80  E-value=0.62  Score=43.54  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~~G-~~Vtli~~~~~  200 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRGLG-VQVTLIYRGEL  200 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHHcC-CeEEEEEeCCC
Confidence            4899999999999999999886 89999999975

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03452 mycothione_red mycothione reductase

Probab=88.55  E-value=0.66  Score=43.56  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|||.++.
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G-~~Vtli~~~~~  203 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALG-TRVTIVNRSTK  203 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CcEEEEEccCc
Confidence            47899999999999999999986 89999999875

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=88.20  E-value=0.73  Score=43.46  Aligned_cols=34  Identities=24%  Similarity=0.195  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~~g-~~Vtli~~~~~~  218 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRRLG-AEVTILEALPAF  218 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CeEEEEeCCCcc
Confidence            6899999999999999999886 899999998753

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=88.16  E-value=0.72  Score=42.74  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|.+.+ .+|.++|+++.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g-~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLG-KNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CcEEEEeCCcc
Confidence            46899999999999999999876 79999999874

>PRK06116 glutathione reductase; Validated

Probab=88.09  E-value=0.76  Score=42.86  Aligned_cols=34  Identities=24%  Similarity=0.168  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGLG-SETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEecCCC
Confidence            36899999999999999999986 89999999875

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=88.04  E-value=0.7  Score=44.19  Aligned_cols=33  Identities=33%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       354 ~VvViGgG~~g~E~A~~L~~~g-~~Vtli~~~~~  386 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAGIV-RHVTVLEFADE  386 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHhcC-cEEEEEEeCCc
Confidence            7999999999999999999876 79999998764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=87.81  E-value=0.77  Score=39.46  Aligned_cols=34  Identities=29%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|.-+|..|++.+ .+|.++++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~~-~~V~~v~~~~~  175 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRIA-KKVTLVHRRDK  175 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhhc-CEEEEEEeCcc
Confidence            37899999999999999999875 89999999874

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=87.79  E-value=0.72  Score=41.06  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|..|++++ .+|.+.++.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G-~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAG-HEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCC-CeeEEEeCCH
Confidence            4789999999999999999987 7999998865

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=87.77  E-value=0.82  Score=43.06  Aligned_cols=33  Identities=33%  Similarity=0.441  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g-~~Vtli~~~~~  211 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELG-VKVTLVSSRDR  211 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCc
Confidence            5899999999999999999986 89999999875

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=87.64  E-value=0.81  Score=42.53  Aligned_cols=34  Identities=44%  Similarity=0.704  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcC-------------CCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-------------PNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-------------~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|.-+|..|++.             .+.+|.|+|+++.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~  221 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSE  221 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCc
Confidence            789999999999999999861             2479999999975

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=87.49  E-value=0.78  Score=44.35  Aligned_cols=33  Identities=30%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~~g-~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTRYA-SKVTVIVREPD  177 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHccC-CEEEEEEeCCc
Confidence            6899999999999999999876 89999999875

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=87.38  E-value=0.83  Score=45.38  Aligned_cols=33  Identities=18%  Similarity=0.104  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|||+++.
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G-~eVTLIe~~~~  346 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALG-SEVVSFEYSPQ  346 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCC-CeEEEEeccCc
Confidence            6899999999999999999987 79999999875

>PLN02507 glutathione reductase

Probab=87.37  E-value=0.84  Score=43.57  Aligned_cols=33  Identities=21%  Similarity=0.086  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~~G-~~Vtli~~~~~  237 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRGMG-ATVDLFFRKEL  237 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHHcC-CeEEEEEecCC
Confidence            6899999999999999999986 89999999874

>PRK13748 putative mercuric reductase; Provisional

Probab=87.31  E-value=0.84  Score=43.76  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|||++.
T Consensus       272 ~vvViGgG~ig~E~A~~l~~~g-~~Vtli~~~~  303 (561)
T PRK13748        272 RLAVIGSSVVALELAQAFARLG-SKVTILARST  303 (561)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CEEEEEecCc
Confidence            5899999999999999999986 8999999864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=87.28  E-value=0.86  Score=42.49  Aligned_cols=33  Identities=30%  Similarity=0.598  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +++|||+|.-|.++|..|++++..+|++..+-.
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~   35 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK   35 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence            589999999999999999999878899988874

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=87.09  E-value=0.85  Score=43.58  Aligned_cols=34  Identities=29%  Similarity=0.312  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +++|||+|..|.-+|..|+..+ .+|.|+++++..
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~-~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIV-KHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcC-CEEEEEEECccc
Confidence            7999999999999999999876 899999998753

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=86.96  E-value=0.91  Score=40.55  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +.|||+|.-|+.+|..|++++ .+|.++.+-
T Consensus         3 I~IiGaGa~G~ala~~L~~~g-~~V~l~~r~   32 (326)
T PRK14620          3 ISILGAGSFGTAIAIALSSKK-ISVNLWGRN   32 (326)
T ss_pred             EEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence            689999999999999999987 789999874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=86.91  E-value=1  Score=41.92  Aligned_cols=34  Identities=29%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       160 ~v~ViGgG~~g~E~A~~l~~~g-~~Vtli~~~~~~  193 (441)
T PRK08010        160 HLGILGGGYIGVEFASMFANFG-SKVTILEAASLF  193 (441)
T ss_pred             eEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCCC
Confidence            6899999999999999999986 899999998753

>PRK10262 thioredoxin reductase; Provisional

Probab=86.88  E-value=0.96  Score=40.06  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++++++.
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~~~-~~Vtlv~~~~~  180 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSNIA-SEVHLIHRRDG  180 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHhhC-CEEEEEEECCc
Confidence            6899999999999999999986 79999999864

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=86.73  E-value=0.72  Score=40.87  Aligned_cols=26  Identities=31%  Similarity=0.331  Sum_probs=23.0

Q ss_pred             hHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          69 SAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        69 ~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .||+++|.+|++.+ .+|+|||+..+.
T Consensus         1 iaGL~aA~~L~~~G-~~v~vlEa~~r~   26 (450)
T PF01593_consen    1 IAGLAAAYYLAKAG-YDVTVLEASDRV   26 (450)
T ss_dssp             HHHHHHHHHHHHTT-TEEEEEESSSSS
T ss_pred             ChHHHHHHHHHhCC-CCEEEEEcCCCC
Confidence            38999999999997 899999998653

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.64  E-value=1  Score=39.62  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|..|..+|..|++++ .+|.+++.-+
T Consensus         5 kIaViGaG~mG~~iA~~la~~G-~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHG-FDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence            3789999999999999999987 7999998754

>PLN02546 glutathione reductase

Probab=86.23  E-value=1  Score=43.77  Aligned_cols=34  Identities=18%  Similarity=0.138  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      =.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g-~~Vtlv~~~~~  286 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLK-SDVHVFIRQKK  286 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC-CeEEEEEeccc
Confidence            36899999999999999999876 79999999874

>PRK14694 putative mercuric reductase; Provisional

Probab=86.22  E-value=1.1  Score=42.15  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|++.+.
T Consensus       180 ~vvViG~G~~G~E~A~~l~~~g-~~Vtlv~~~~  211 (468)
T PRK14694        180 RLLVIGASVVALELAQAFARLG-SRVTVLARSR  211 (468)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CeEEEEECCC
Confidence            5899999999999999999986 8999999764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.22  E-value=1  Score=39.53  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|||+|.-|..+|..|++++ .+|.+.+.-+
T Consensus         4 V~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~   34 (288)
T PRK09260          4 LVVVGAGVMGRGIAYVFAVSG-FQTTLVDIKQ   34 (288)
T ss_pred             EEEECccHHHHHHHHHHHhCC-CcEEEEeCCH
Confidence            689999999999999999987 8999998764

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=85.89  E-value=1  Score=45.44  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|.++.
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~~G-~~Vtvv~~~~~  174 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQNLG-MDVSVIHHAPG  174 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHhcC-CeEEEEccCCc
Confidence            5899999999999999999987 89999999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=85.66  E-value=1.2  Score=41.91  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -.++|||+|.+|..+|.-|.+.+ .+|.++|...
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G-~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELG-ARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence            36899999999999999999887 8999999764

>PRK14727 putative mercuric reductase; Provisional

Probab=85.49  E-value=1.2  Score=42.11  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+++..
T Consensus       190 ~vvVIGgG~iG~E~A~~l~~~G-~~Vtlv~~~~  221 (479)
T PRK14727        190 SLTVIGSSVVAAEIAQAYARLG-SRVTILARST  221 (479)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CEEEEEEcCC
Confidence            5899999999999999999886 8999999863

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=85.48  E-value=1.3  Score=34.46  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-++|||.|.-|+.+|..|+..|-.++.+++-..-.
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            347999999999999999999886689999877643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PTZ00058 glutathione reductase; Provisional

Probab=85.47  E-value=1.1  Score=43.62  Aligned_cols=34  Identities=12%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      =.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G-~~Vtli~~~~~  271 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLG-AESYIFARGNR  271 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcC-CcEEEEEeccc
Confidence            36899999999999999999987 89999999874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=85.44  E-value=1.4  Score=35.68  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL   89 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlL   89 (224)
                      .--++|||+|..|.-.|..|.+.+ .+|.||
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~g-a~V~VI   42 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTG-AFVTVV   42 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEE
Confidence            456899999999999999999986 799998

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=85.26  E-value=1.2  Score=39.80  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++++ .+|.++.+.+
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G-~~V~~~~r~~   35 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAG-ADVTLIGRAR   35 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcC-CcEEEEecHH
Confidence            3789999999999999999987 7999998864

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.91  E-value=1.3  Score=41.24  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -.++|||+|..|..+|.+|++.| .+|.+.+...
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G-~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLG-AKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCc
Confidence            45899999999999999999998 8999999864

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=84.74  E-value=1.7  Score=34.01  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.1

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|||.|.-|+.+|..|+..|-.++.+++...-
T Consensus         2 VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v   34 (143)
T cd01483           2 VLLVGLGGLGSEIALNLARSGVGKITLIDFDTV   34 (143)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCc
Confidence            689999999999999999998567999987754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=84.55  E-value=1.4  Score=42.08  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHh---cCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLS---ENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLa---e~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|+   +.+ .+|.|||+++.
T Consensus       189 ~vvIIGgG~iG~E~A~~~~~l~~~G-~~Vtli~~~~~  224 (486)
T TIGR01423       189 RVLTVGGGFISVEFAGIFNAYKPRG-GKVTLCYRNNM  224 (486)
T ss_pred             eEEEECCCHHHHHHHHHHHHhccCC-CeEEEEecCCc
Confidence            5899999999999997554   334 79999999975

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=84.55  E-value=1.3  Score=45.24  Aligned_cols=33  Identities=27%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|.++.
T Consensus       147 ~vvVIGgG~iGlE~A~~L~~~G-~~VtvVe~~~~  179 (847)
T PRK14989        147 RGAVVGGGLLGLEAAGALKNLG-VETHVIEFAPM  179 (847)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CeEEEEecccc
Confidence            5799999999999999999987 89999999875

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=84.51  E-value=1.4  Score=39.36  Aligned_cols=32  Identities=22%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|.-|..+|.+|++++ .+|.+..+.+
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G-~~V~~~~r~~   37 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKG-VPVRLWARRP   37 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence            4899999999999999999987 7899998854

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.43  E-value=1.5  Score=38.57  Aligned_cols=32  Identities=28%  Similarity=0.410  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|.-|..+|..|+.++ .+|.+.++-+
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G-~~V~l~d~~~   37 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAG-YDVLLNDVSA   37 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence            3789999999999999999987 8999998753

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=84.33  E-value=1.5  Score=36.85  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .--++|||+|..|.-.|..|.+.+ .+|.|++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~   41 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYG-AHIVVISP   41 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcC
Confidence            457899999999999999999987 79999964

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.05  E-value=1.6  Score=38.69  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -+-|||+|.-|+-+|..|+.++ .+|.+++.-+.
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~   39 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAG-VDVLVFETTEE   39 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCC-CEEEEEECCHH
Confidence            4779999999999999999987 89999988764

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=83.96  E-value=1.6  Score=39.32  Aligned_cols=33  Identities=24%  Similarity=0.081  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|.+.+..+|.|+|+..
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            589999999999999999887633499999865

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=83.83  E-value=1.4  Score=36.56  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=25.3

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.|||.|.-|+++|..||+.| .+|+.+|..+.
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G-~~V~g~D~~~~   34 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKG-HQVIGVDIDEE   34 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTT-SEEEEE-S-HH
T ss_pred             EEEECCCcchHHHHHHHHhCC-CEEEEEeCChH
Confidence            579999999999999999998 89999988753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=83.76  E-value=2.3  Score=33.25  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +.--++|||+|-+|..++..|.+.+-.+|.|+-|-
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35679999999999999999999875559988764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=83.65  E-value=1.5  Score=39.36  Aligned_cols=32  Identities=25%  Similarity=0.526  Sum_probs=28.7

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.|+|+|.-|+..|.+|++.+ -.|+++=+.+.
T Consensus         3 I~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~~   34 (307)
T COG1893           3 ILILGAGAIGSLLGARLAKAG-HDVTLLVRSRR   34 (307)
T ss_pred             EEEECCcHHHHHHHHHHHhCC-CeEEEEecHHH
Confidence            689999999999999999998 78888887763

>KOG0404|consensus

Probab=83.56  E-value=1.2  Score=39.01  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      -.++|||||+|+-.+|..+++.. +|=||.|-+
T Consensus         9 e~v~IiGSGPAa~tAAiYaarae-lkPllfEG~   40 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAE-LKPLLFEGM   40 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcc-cCceEEeee
Confidence            36899999999999999999975 899999965

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=83.44  E-value=1.7  Score=38.19  Aligned_cols=31  Identities=23%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|||+|.-|+.+|..|+..+ .+|.+.+.-+
T Consensus         6 I~ViGaG~mG~~iA~~la~~G-~~V~l~d~~~   36 (291)
T PRK06035          6 IGVVGSGVMGQGIAQVFARTG-YDVTIVDVSE   36 (291)
T ss_pred             EEEECccHHHHHHHHHHHhcC-CeEEEEeCCH
Confidence            789999999999999999987 7999998754

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.38  E-value=1.7  Score=39.36  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +-|||+|..|+-+|..++..| .+|.+.+.-+
T Consensus        10 VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~   40 (321)
T PRK07066         10 FAAIGSGVIGSGWVARALAHG-LDVVAWDPAP   40 (321)
T ss_pred             EEEECcCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence            779999999999999999987 9999998764

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=83.02  E-value=2.6  Score=30.20  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .-.++|+|+|..|..+|..|.+.+..+|.+.++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            346999999999999999999985578888877

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=83.01  E-value=1.6  Score=32.58  Aligned_cols=33  Identities=30%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .--++|||+|..|..-+..|.+.+ -+|.|+-.-
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~   39 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAG-AKVTVISPE   39 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCc
Confidence            467899999999999999999987 899987544

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=82.78  E-value=1.9  Score=39.33  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...-++|||.|.-|+.+|..|+..|--++.|++...
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            456799999999999999999999855899998875

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=82.73  E-value=2  Score=37.96  Aligned_cols=32  Identities=31%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++++ ..|.++.+.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g-~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNG-HDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CEEEEEECCH
Confidence            3789999999999999999987 7899998864

>PTZ00052 thioredoxin reductase; Provisional

Probab=82.71  E-value=1.7  Score=41.48  Aligned_cols=31  Identities=23%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~G-~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNELG-FDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            6899999999999999999987 899999974

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=82.21  E-value=2.1  Score=36.73  Aligned_cols=34  Identities=21%  Similarity=0.432  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC--eEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNW--KVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~   93 (224)
                      --++|+|+|.+|..+|..|.+.+-.  +|.++++-+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            4689999999999999999998744  699999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=82.17  E-value=2.2  Score=35.80  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      --++|+|.|..|..+|.+|.+.+ .+|++.+.-.
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G-~~Vvv~D~~~   61 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEG-AKLIVADINE   61 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCH
Confidence            35899999999999999999987 7999887643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=82.06  E-value=1.7  Score=40.94  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      -.++|||+|.+|.-+|..|++.+ .+|.|+=+.+...
T Consensus       176 KrV~VIG~GaSA~di~~~l~~~g-a~vt~~qRs~~~~  211 (443)
T COG2072         176 KRVLVIGAGASAVDIAPELAEVG-ASVTLSQRSPPHI  211 (443)
T ss_pred             CeEEEECCCccHHHHHHHHHhcC-CeeEEEecCCCce
Confidence            57899999999999999999998 8999999987543

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=81.99  E-value=2  Score=40.26  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|.-+|..|.+.+ .+|.|++++..
T Consensus       274 ~VvVIGgG~~a~d~A~~l~~~G-~~Vtlv~~~~~  306 (449)
T TIGR01316       274 SVVVIGGGNTAVDSARTALRLG-AEVHCLYRRTR  306 (449)
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CEEEEEeecCc
Confidence            6999999999999999999987 68999998864

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.96  E-value=2  Score=37.54  Aligned_cols=32  Identities=22%  Similarity=0.438  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|..|+.+|..|+..+ .+|.+++.-+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g-~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAG-YDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCC-CceEEEeCCH
Confidence            4789999999999999999987 7999998543

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=81.93  E-value=1.8  Score=41.16  Aligned_cols=31  Identities=19%  Similarity=0.143  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+++.
T Consensus       182 ~vvIIGgG~iG~E~A~~l~~~G-~~Vtli~~~  212 (484)
T TIGR01438       182 KTLVVGASYVALECAGFLAGIG-LDVTVMVRS  212 (484)
T ss_pred             CEEEECCCHHHHHHHHHHHHhC-CcEEEEEec
Confidence            5899999999999999999986 799999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.92  E-value=2.2  Score=37.83  Aligned_cols=32  Identities=19%  Similarity=0.473  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|..|+.+|..|+..+ .+|.+++.-.
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g-~~V~~~d~~~   37 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKG-LQVVLIDVME   37 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            3789999999999999999986 7999998643

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=81.37  E-value=2.6  Score=32.13  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=27.3

Q ss_pred             EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.||| +|..|..+...|.+++..+++.|-....
T Consensus         2 V~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~   35 (121)
T PF01118_consen    2 VAIVGATGYVGRELLRLLAEHPDFELVALVSSSR   35 (121)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred             EEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence            56999 9999999999999999888666655443

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK04148 hypothetical protein; Provisional

Probab=81.25  E-value=1.6  Score=34.78  Aligned_cols=33  Identities=21%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      --+++||.| .|..+|..|++.+ ..|+.+|.-+.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G-~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESG-FDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCC-CEEEEEECCHH
Confidence            358999999 7877899999987 89999987764

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.02  E-value=2.3  Score=39.73  Aligned_cols=32  Identities=25%  Similarity=0.440  Sum_probs=28.6

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.|||.|.+|..+|.-|.+.| .+|.+.|+...
T Consensus         3 v~viG~G~sG~s~a~~l~~~G-~~V~~~D~~~~   34 (459)
T PRK02705          3 AHVIGLGRSGIAAARLLKAQG-WEVVVSDRNDS   34 (459)
T ss_pred             EEEEccCHHHHHHHHHHHHCC-CEEEEECCCCc
Confidence            689999999999999999987 89999998754

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=80.27  E-value=2.8  Score=38.22  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...-++|||+|.-|+.+|..|+..|--++.+++...
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            467899999999999999999999855899999875

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=80.26  E-value=3.2  Score=33.99  Aligned_cols=33  Identities=18%  Similarity=0.186  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|||.|.-|+.+|..|+..|-.++.+++...-
T Consensus         2 VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v   34 (174)
T cd01487           2 VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV   34 (174)
T ss_pred             EEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEE
Confidence            689999999999999999988556999988763

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		3e-16
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		2e-15
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		4e-15
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		1e-10
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		1e-10
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		2e-10
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		4e-10
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		2e-08

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 59  EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEI--TDVPVLSLYL-HKSRFDW 115
           ++D++             RL+E+P+  VL+LEAG  +  +   + P+L+  L   S FDW
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61
Query: 116 KYRTQPGTTACQAMKDKRCV-WTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWS 173
            Y     TT  QA  + R + + RG+++GGSS ++ M+ +RG+  DFD++AA  G+EGW+
Sbjct: 62  NY-----TTTAQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWN 116
Query: 174 YEEVLPYFKKS------MDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRC 220
           ++ +  + +K+       D  N     I   H T G +++    + TPL  R 
Sbjct: 117 WDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRV 169

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 80/147 (54%), Gaps = 15/147 (10%)
Query: 60  YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAG-GHETEITDV--PVLSLYLHKSRFDWK 116
           +DF+             RL+ENPN  VL++EAG G+  +I ++  P  ++ L  S++DW 
Sbjct: 7   FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 117 YRTQPGTTACQAMKDKRCVW--TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSY 174
           Y+T    T  +    +R     TRGK +GGSS LN   +V G++  FDQW   G + W++
Sbjct: 67  YKT----TMVRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTW 122
Query: 175 EEVLPYFKKSM----DQR--NPYLAKI 195
           + ++PY +KS     D R  +P L KI
Sbjct: 123 DPLVPYLRKSATYHDDPRLYSPELEKI 149

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 65/115 (56%), Gaps = 10/115 (8%)
Query: 77  RLSENPNWKVLLLEAGGHETEITDV--PVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC 134
           RLSE+P+ +VLL+EAG   T+  D+  P     L    +DW YRT+      QA    R 
Sbjct: 35  RLSEDPDSRVLLIEAGEEPTD-PDIWNPAAWPALQGRSYDWDYRTE-----AQAGTAGRA 88
Query: 135 V-WTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGWSYEEVLPYFKKSMDQ 187
             W RG++IGGSS L+ M Y+RG+  DF  W  A G+  W ++E+LP F+   D 
Sbjct: 89  HHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH 143

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 59  EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLS--LYLHKSRFDWK 116
           E+D+I             RLSE+P   V L+EAG  +  + +V  L   + L +S +DW 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
           Y  +P       M+  R      KV+GG S  N+ +     R D D+W A  G  GW+ E
Sbjct: 73  YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGF 218
              P +K+   + N        +H   G + + + P   P G 
Sbjct: 128 AAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 70/163 (42%), Gaps = 10/163 (6%)
Query: 59  EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLS--LYLHKSRFDWK 116
           E+D+I             RLSE+P   V L+EAG  +  + +V  L   + L +S +DW 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
           Y  +P       M+  R      KV+GG S  N+ +     R D D+W A  G  GW+ E
Sbjct: 73  YPIEPQENGNSFMRHARA-----KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGF 218
              P +K+   + N        +H   G + + + P   P G 
Sbjct: 128 AAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 59  EYDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETEITDVPVLS--LYLHKSRFDWK 116
           E+D+I             RLSE+P   V L+EAG  +  + +V  L   + L +S +DW 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 117 YRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYE 175
           Y  +P       M+  R      KV+GG S  N  +     R D D+W A  G  GW+ E
Sbjct: 73  YPIEPQENGNSFMRHARA-----KVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWNAE 127
Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGF 218
              P +K+   + N        +H   G + + + P   P G 
Sbjct: 128 AAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGV 168

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 44  YDPETQIFDQKKLLME--------YDFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHE 95
           Y P  QI  Q  LL +        YD+I             +L+ENP  KVL++E G +E
Sbjct: 1   YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 96  TE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTML 152
           +    I + P     +  +  D  Y T P       + ++      GK +GGS+++N   
Sbjct: 61  SNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGGSTLINGDS 114
Query: 153 YVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHA 200
           + R ++   D W    G EGW+++ +  Y KK+   R P  A++   H+
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHS 163

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 61  DFIXXXXXXXXXXXXXRLSENPNWKVLLLEAGGHETE----ITDVPVLSLY--LHKSRFD 114
           D+I             RL+ENPN  VL++E+G +E++    I D   L+ Y  +  S  D
Sbjct: 21  DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIED---LNAYGDIFGSSVD 77
Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWS 173
             Y      T   A  ++  +   G  +GGS+++N   + R ++   D W    GNEGW+
Sbjct: 78  HAYE-----TVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYH 199
           ++ V  Y  ++   R P   +I   H
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGH 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-82
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	4e-81
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	2e-79
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	1e-77
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	4e-67
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	2e-63
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	6e-63
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	3e-49
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	7e-16
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	6e-13
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	2e-09
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	8e-06
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-05
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	4e-05
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	4e-05
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	5e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	5e-05
3atr_A	453	Conserved archaeal protein; saturating double bond	5e-05
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	7e-05
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	7e-05
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	9e-05
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	1e-04
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	1e-04
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	2e-04

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  255 bits (654), Expect = 2e-82
 Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 22/195 (11%)

Query: 38  YFRYDLYDPETQIFDQKKLLM--EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95
           Y      D ++ +      +    YD+I+ GGG  G  VA +L+ENP  KVL++E G +E
Sbjct: 1   YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60

Query: 96  TE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTML 152
           +    I + P     +  +  D  Y T P       + ++      GK +GGS+++N   
Sbjct: 61  SNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDS 114

Query: 153 YVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKI-------DRYHATGGY 204
           + R ++   D W    G EGW+++ +  Y KK+   R P  A++          H T G 
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT 174

Query: 205 LTVQDSPW---NTPL 216
           +           +P+
Sbjct: 175 VQSGARDNGQPWSPI 189

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  251 bits (644), Expect = 4e-81
 Identities = 58/168 (34%), Positives = 96/168 (57%), Gaps = 14/168 (8%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI--TDVPVLSLYL-HKSRFDW 115
           ++D++VVG G+AGNVVA RL+E+P+  VL+LEAG  +  +   + P+L+  L   S FDW
Sbjct: 2   DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDW 61

Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSY 174
            Y T            +   + RG+++GGSS ++ M+ +RG+  DFD++AA  G+EGW++
Sbjct: 62  NYTTTA----QAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNW 117

Query: 175 EEVLPYFKKS------MDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
           + +  + +K+       D  N     I   H T G +++    + TPL
Sbjct: 118 DNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPL 165

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  247 bits (633), Expect = 2e-79
 Identities = 55/161 (34%), Positives = 84/161 (52%), Gaps = 11/161 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI---TDVPVLSLYLHKSRFDW 115
            +DF++VGGG+AGN VA RL+ENPN  VL++EAG    E       P  ++ L  S++DW
Sbjct: 6   HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65

Query: 116 KYRTQPGTTACQAMKDKRCVW--TRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWS 173
            Y+T       +    +R     TRGK +GGSS LN   +V G++  FDQW   G + W+
Sbjct: 66  AYKTTM----VRRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWT 121

Query: 174 YEEVLPYFKKSMDQRNPYLA--KIDRYHATGGYLTVQDSPW 212
           ++ ++PY +KS    +              GG + +  +  
Sbjct: 122 WDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAEL 162

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  243 bits (622), Expect = 1e-77
 Identities = 45/172 (26%), Positives = 75/172 (43%), Gaps = 19/172 (11%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVPVLSLYLHKSRFDW 115
             D+I+ GGG  G   A RL+ENPN  VL++E+G +E++   I +       +  S  D 
Sbjct: 19  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78

Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSY 174
            Y T        A  ++  +   G  +GGS+++N   + R ++   D W    GNEGW++
Sbjct: 79  AYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNW 133

Query: 175 EEVLPYFKKSMDQRNPYLAKI-------DRYHATGGYLTVQD---SPWNTPL 216
           + V  Y  ++   R P   +I          H   G +           +P+
Sbjct: 134 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPI 185

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  214 bits (548), Expect = 4e-67
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 10/162 (6%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITD-VPVLSLY-LHKSRFDW 115
            E+D+IVVGGGSAG  VA RLSE+P   V L+EAG  +  + + + +     L +S +DW
Sbjct: 12  REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDW 71

Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSY 174
            Y  +P     Q   +      R KV+GG S  N+ +     R D D+W A  G  GW+ 
Sbjct: 72  DYPIEP-----QENGNSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126

Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
           E   P +K+   + N        +H   G + + + P   P 
Sbjct: 127 EAAWPLYKRL--ETNEDAGPDAPHHGDSGPVHLMNVPPKDPT 166

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  204 bits (522), Expect = 2e-63
 Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 15/163 (9%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEIT-DVPVLSLYLHKSRFDWKY 117
             D ++VGGGSAG+++A RLSE+P+ +VLL+EAG   T+     P     L    +DW Y
Sbjct: 17  NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDY 76

Query: 118 RTQPGTTACQA-MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWA-ADGNEGWSYE 175
           RT+      QA    +   W RG++IGGSS L+ M Y+RG+  DF  W  A G+  W ++
Sbjct: 77  RTEA-----QAGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWD 131

Query: 176 EVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQD--SPWNTPL 216
           E+LP F+    + +P     D  H  GG L +       + PL
Sbjct: 132 ELLPVFQAI--EDHPLGG--DGIHGKGGPLPIHLPADEVS-PL 169

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  203 bits (519), Expect = 6e-63
 Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 33/178 (18%)

Query: 39  FRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEI 98
           F YD  D E        L   YD+++VGGG++G  +A  LSE   +KVL+LE G   T  
Sbjct: 14  FAYDATDLE--------LEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAY 63

Query: 99  TDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNR 158
            +V     +++  + +   +T       + + +      RG+V+GG+S++N  +Y R N 
Sbjct: 64  PNVLTADGFVYNLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARANT 119

Query: 159 RDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
             +          W  + V   ++   D           Y             W +  
Sbjct: 120 SIYSAS----GVDWDMDLVNQTYEWVEDT--------IVYK-------PNSQSWQSVT 158

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  167 bits (426), Expect = 3e-49
 Identities = 41/163 (25%), Positives = 57/163 (34%), Gaps = 25/163 (15%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG----HETEITDVPVLSLYL----HK 110
            YD+I+VG G  G + A+RLSE    KVLLLE GG            P  +         
Sbjct: 7   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65

Query: 111 SRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNE 170
                   T            K      G ++GG + +N  LY   N  DF       + 
Sbjct: 66  PGLFESLFTDSN----PFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDF-----SSSV 116

Query: 171 GW--SYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSP 211
           GW  S+    PY  K   +          + +T G   ++ S 
Sbjct: 117 GWPSSWTNHAPYTSKLSSRLPS-----TDHPSTDGQRYLEQSF 154

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 74.7 bits (183), Expect = 7e-16
 Identities = 29/152 (19%), Positives = 47/152 (30%), Gaps = 24/152 (15%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG---------GHETEITDVPVLSLYLH 109
               +V+G G    V A RL E    + L+LE G         G+       P       
Sbjct: 5   YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63

Query: 110 KSRFDWKYR-----------TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNR 158
           K+R +                 P       +   +     G+ +GG S++N  + V   R
Sbjct: 64  KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123

Query: 159 RDFDQWAADGNEGWSYEEVLPYFKKSMDQRNP 190
             F++         S E    YF ++      
Sbjct: 124 SYFEEIL---PRVDSSEMYDRYFPRANSMLRV 152

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 66.3 bits (161), Expect = 6e-13
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 23/144 (15%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVP---------------- 102
               +V+G G  G V A RL++       ++E G                          
Sbjct: 11  RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69

Query: 103 ---VLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRR 159
                    +   F              + +       +G+ +GG S++N  + V   R 
Sbjct: 70  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129

Query: 160 DFDQWAADGNEGWSYEEVLPYFKK 183
            F++         S E    YF +
Sbjct: 130 YFEEIL---PSVDSNEMYNKYFPR 150

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 32/190 (16%), Positives = 52/190 (27%), Gaps = 45/190 (23%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
           +YD ++VG G  G   A  L     +KV + + G  ++ +         +   +   K+ 
Sbjct: 46  KYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 104

Query: 119 TQP---------------------------------GTTACQAMKDKRCVWTRGKVIGGS 145
                                               G+   Q            +V+GG 
Sbjct: 105 NVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGM 164

Query: 146 SVLNTMLYVRGNRRDF-----DQWAADGNEGW-SYEEVLPYFKKSMDQ-----RNPYLAK 194
           S   T    R +R        D   AD  E    Y +   YF+   DQ     R+  +  
Sbjct: 165 STAWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAESYFQTGTDQFKESIRHNLVLN 224

Query: 195 IDRYHATGGY 204
                  G  
Sbjct: 225 KLTEEYKGQR 234

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 44.8 bits (105), Expect = 8e-06
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 54 KKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          + +   +D  VVG G  G  +A R++   + +VL+LE   H
Sbjct: 2  QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPH 42

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAG 92
             D I+VG GS+G   A  +++N P+ KV ++E+ 
Sbjct: 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS 99

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
           E D +VVG GSAG   A  +S+NPN +V ++E  
Sbjct: 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 72

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
           +D+++VG G AG+V+A RL+ +   +VL+++   H
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASS-GQRVLIVDRRPH 63

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 12/53 (22%), Positives = 24/53 (45%)

Query: 40 RYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
           +  +   + +  +   +  +D++VVG G  G   A  L       VL+++AG
Sbjct: 4  SHHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGHETE 97
            +D +V+G G  G   A  L +  P   +LL+E GG   E
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNE 75

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 42.5 bits (100), Expect = 5e-05
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
          ++YD +++GGG AG+  A +LS     K+LL+++ 
Sbjct: 5  LKYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSK 38

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 8/37 (21%), Positives = 18/37 (48%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          +  D +V+G G  G   A RL++      +++++   
Sbjct: 9  ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 41.6 bits (97), Expect = 9e-05
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          YD+I+VG G  G V AN L +  N KVL++E   H
Sbjct: 2  YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
              ++VG G +G V+  +L+E    +V +++   H
Sbjct: 3  SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH 37

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 4/41 (9%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGH 94
           +    ++G G AG      L +       +LE     GG 
Sbjct: 5  KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGK 45

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEA----GGH 94
            E D ++VG GS G   A  LS   P+ ++ ++EA    GG 
Sbjct: 78  AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	99.98
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.97
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.91
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.9
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.89
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.79
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.66
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.56
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.37
3dme_A	369	Conserved exported protein; structural genomics, P	98.29
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.28
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.26
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.25
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.24
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.23
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.2
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.19
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.18
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.18
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.15
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.14
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.13
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.13
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.12
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.12
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.09
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.08
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.08
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.07
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.05
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.03
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.03
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.03
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.02
3atr_A	453	Conserved archaeal protein; saturating double bond	98.02
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.01
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.01
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.01
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.0
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.98
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.97
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.96
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.96
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.93
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.92
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.92
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.92
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.92
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.92
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.91
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.91
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.91
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.91
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.91
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.9
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.9
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.9
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.89
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.89
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.89
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.89
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.88
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.87
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.87
4dna_A	463	Probable glutathione reductase; structural genomic	97.87
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.87
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.87
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.87
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.86
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.86
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.86
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.86
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.85
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.85
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.84
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.84
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.84
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.84
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.83
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.83
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.83
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.82
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.82
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.82
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.81
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.81
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.81
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.81
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.81
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.81
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.8
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.8
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.8
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.8
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.79
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.78
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.78
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.78
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.78
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.78
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.78
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.77
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.77
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.77
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.77
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.76
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.76
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.75
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.75
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.75
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.75
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.74
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.74
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.73
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.73
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.72
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.72
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.72
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.72
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.71
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.71
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.71
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.71
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.71
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.7
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.7
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.69
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.69
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.69
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.69
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.69
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.66
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.65
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.65
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.65
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.64
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.64
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.64
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.63
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.63
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.62
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.61
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.61
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.61
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.6
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.6
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.59
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.59
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.59
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.58
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.56
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.55
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.55
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.55
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	97.55
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.53
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.52
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.51
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.48
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.47
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.45
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.45
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.44
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.43
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.42
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.42
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.4
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.38
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.35
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.34
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.32
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.32
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.31
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.26
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.26
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	97.25
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.23
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.21
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.2
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.18
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.17
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	97.16
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.13
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.13
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	97.09
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.09
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.07
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.06
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.06
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.03
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.98
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.97
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	96.93
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.87
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.8
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.72
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.72
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.71
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.7
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	96.58
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.38
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.1
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.04
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	96.01
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.83
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.39
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.17
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.14
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.87
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	93.69
1id1_A	153	Putative potassium channel protein; RCK domain, E.	93.56
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.54
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	93.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	93.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	92.97
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	92.92
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	92.78
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	92.74
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	92.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	92.55
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.54
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	92.15
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	91.96
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	91.91
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	91.73
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	91.57
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	91.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.29
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	91.26
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.1
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	90.93
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	90.76
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	90.7
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	90.68
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	90.67
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	90.54
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	90.31
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	90.29
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.05
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	90.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	89.95
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	89.95
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	89.88
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	89.87
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	89.87
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	89.82
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	89.76
1ojt_A	482	Surface protein; redox-active center, glycolysis,	89.68
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	89.58
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	89.52
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	89.48
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	89.41
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	89.32
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	89.28
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	89.21
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	89.21
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	89.12
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	89.1
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	89.07
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	89.03
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	88.44
4g65_A	461	TRK system potassium uptake protein TRKA; structur	88.36
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	88.31
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	88.16
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	88.16
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	88.14
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	88.02
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	87.99
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	87.98
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	87.97
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	87.95
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	87.76
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	87.68
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	87.56
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	87.49
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	87.38
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	87.37
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	87.35
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	87.31
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	87.15
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	87.14
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.94
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	86.8
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	86.79
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	86.63
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	86.62
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	86.55
1fec_A	490	Trypanothione reductase; redox-active center, oxid	86.39
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	85.88
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	85.86
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	85.76
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	85.71
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	85.26
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	85.24
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	85.24
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	85.03
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	84.96
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	84.95
3r9u_A	315	Thioredoxin reductase; structural genomics, center	84.93
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	84.79
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	84.56
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	84.36
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	84.34
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	84.31
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	84.03
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	83.99
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	83.71
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	83.4
4dna_A	463	Probable glutathione reductase; structural genomic	83.05
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	82.87
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	82.83
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	82.66
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	82.43
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	82.42
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	82.09
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	82.06
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	81.96
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	81.88
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	81.46
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	81.45
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	81.32
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	81.3
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	81.28
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	81.21
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	81.06
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	80.92
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	80.88
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	80.79
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	80.66
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	80.5
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	80.46
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	80.21
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	80.19
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	80.16
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	80.16

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=8.4e-38  Score=297.83  Aligned_cols=158  Identities=37%  Similarity=0.676  Sum_probs=136.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC--Ccccccchhhhhcc-CCCCCCccccCCCccccccccCCcee
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE--TEITDVPVLSLYLH-KSRFDWKYRTQPGTTACQAMKDKRCV  135 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~--~~~~~~p~~~~~~~-~~~~~w~~~t~p~~~~~~~~~~~~~~  135 (224)
                      +|||||||+|+|||++|.||+|+++++|||||||+..  .....+|.....+. ++.++|+|.++||+    .++++.+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~----~~~~r~~~   77 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA----GYNGRSIA   77 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCG----GGTTCCCB
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCC----CCCCceEe
Confidence            6999999999999999999999878999999999865  23345676544444 47899999999997    46889999


Q ss_pred             eccceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCCC------CCCCCCCCCCcceEEe
Q psy7388         136 WTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYL------AKIDRYHATGGYLTVQ  208 (224)
Q Consensus       136 ~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~~------~~~~~~hg~~Gpl~v~  208 (224)
                      |+|||+|||||+||+|+|+|+++.|||.|++. |+++|+|++|+|||+|+|++..|..      ..+..+||.+||++|+
T Consensus        78 ~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~v~  157 (566)
T 3fim_B           78 YPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSIS  157 (566)
T ss_dssp             CCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEEEB
T ss_pred             ccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCeeee
Confidence            99999999999999999999999999999987 9999999999999999999876532      1234689999999999


Q ss_pred             eCCCCChhhhhc
Q psy7388         209 DSPWNTPLGFRC  220 (224)
Q Consensus       209 ~~~~~~~~~~~~  220 (224)
                      ++++..|+.+++
T Consensus       158 ~~~~~~~~~~~~  169 (566)
T 3fim_B          158 LPGFPTPLDDRV  169 (566)
T ss_dssp             SCSSCCTHHHHH
T ss_pred             cCCCCCHHHHHH
Confidence            998888766543

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=2.1e-37  Score=296.08  Aligned_cols=157  Identities=25%  Similarity=0.403  Sum_probs=129.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC---cccccchhhhhccCCCCCCccccCCCccccccccCCce
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET---EITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      ++|||||||+|+|||++|.||+|+++++|||||||++..   +....|.....+..+.++|+|.++||.     +.++.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-----~~~r~~   92 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQTA   92 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCCC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-----CCCCee
Confidence            579999999999999999999999889999999999422   122334333334467899999999985     467889


Q ss_pred             eeccceEecCCccccceeeecCChhhhHHHhhCCCC-CCChhchHHHHHHHHhcCCCCC-------CCCCCCCCCCcceE
Q psy7388         135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNE-GWSYEEVLPYFKKSMDQRNPYL-------AKIDRYHATGGYLT  206 (224)
Q Consensus       135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~-gWsy~~l~pyf~k~E~~~~p~~-------~~~~~~hg~~Gpl~  206 (224)
                      .|+|||+|||||+||+|+|.|+++.|||.|++.|++ +|+|++|+|||+|+|++..|..       ..+..+||.+|||+
T Consensus        93 ~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~  172 (583)
T 3qvp_A           93 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH  172 (583)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEE
T ss_pred             eccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEE
Confidence            999999999999999999999999999999999988 9999999999999999876531       13356899999999


Q ss_pred             EeeC---CCCChhhhh
Q psy7388         207 VQDS---PWNTPLGFR  219 (224)
Q Consensus       207 v~~~---~~~~~~~~~  219 (224)
                      |+++   ....|+.++
T Consensus       173 v~~~~~~~~~~~~~~~  188 (583)
T 3qvp_A          173 AGPRDTGDDYSPIVKA  188 (583)
T ss_dssp             EBCCCCSSCBCTHHHH
T ss_pred             ecCCCCcccCCHHHHH
Confidence            9987   233454433

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=4.3e-35  Score=273.17  Aligned_cols=154  Identities=38%  Similarity=0.683  Sum_probs=129.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc-ccccchhhhhccCCCCCCccccCCCccccccccCCceee
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE-ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVW  136 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~-~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~  136 (224)
                      .+|||||||||+|||++|+||||++++||||||||+.... ....|.....++.++++|+|.++||..    +.++.+.|
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~~----~~~~~~~~   91 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQAG----TAGRAHHW   91 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBGG----GTTBCCEE
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccCC----CCCCeEec
Confidence            4799999999999999999999988899999999986432 234455555566788999999999974    57888999


Q ss_pred             ccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeCCC-CC
Q psy7388         137 TRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPW-NT  214 (224)
Q Consensus       137 ~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~~~-~~  214 (224)
                      +|||+|||||+||+|+|+|+++.|||.|++ .++.+|+|++++|||+|+|+.....    ...|+..||+.+..+.. ..
T Consensus        92 ~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~~----~~~~~~~g~~~~~~~~~~~~  167 (526)
T 3t37_A           92 ARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLGG----DGIHGKGGPLPIHLPADEVS  167 (526)
T ss_dssp             CCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTTT----SSSSCSSCSEECBCCSTTSC
T ss_pred             cCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCCC----ccccCcCCCcCcccccccCC
Confidence            999999999999999999999999999976 6789999999999999999875432    34789999999987643 35


Q ss_pred             hhhhh
Q psy7388         215 PLGFR  219 (224)
Q Consensus       215 ~~~~~  219 (224)
                      |+.++
T Consensus       168 p~~~~  172 (526)
T 3t37_A          168 PLARA  172 (526)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=1.3e-35  Score=283.18  Aligned_cols=149  Identities=36%  Similarity=0.658  Sum_probs=126.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC---cccccchhhhhccCCCCCCccccCCCccccccccCCce
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET---EITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~---~~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      ++|||||||+|+|||++|.||+|+++++|||||+|+...   +...+|.....+..+.++|+|.++        +.++.+
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~--------~~~r~~   76 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTT--------MVRRDD   76 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEE--------EEEETT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEE--------ECCccc
Confidence            579999999999999999999999889999999998732   234567665556678899999987        234445


Q ss_pred             e------eccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcCCCCCC--CCCCCCCCCcceE
Q psy7388         135 V------WTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLA--KIDRYHATGGYLT  206 (224)
Q Consensus       135 ~------~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~~p~~~--~~~~~hg~~Gpl~  206 (224)
                      .      |+|||+|||||++|+|+|.|+++.|||.|++.|+++|+|++++|||+|+|++..+...  .+..+||.+|||+
T Consensus        77 ~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~  156 (577)
T 3q9t_A           77 YERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIP  156 (577)
T ss_dssp             EEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEE
T ss_pred             cccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEE
Confidence            5      9999999999999999999999999999999999999999999999999998765321  2234799999999


Q ss_pred             EeeCCCCC
Q psy7388         207 VQDSPWNT  214 (224)
Q Consensus       207 v~~~~~~~  214 (224)
                      |+++++..
T Consensus       157 v~~~~~~~  164 (577)
T 3q9t_A          157 ISHAELID  164 (577)
T ss_dssp             EEECCCCG
T ss_pred             eeCCCCCc
Confidence            99987654

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=99.98  E-value=1.2e-32  Score=262.95  Aligned_cols=156  Identities=29%  Similarity=0.489  Sum_probs=127.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc--ccc-cchhhhhccCCCCCCccccCCCccccccccCCce
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE--ITD-VPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~--~~~-~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      .+|||||||+|++|+++|.||+++++++|||||+|.....  ..+ +|.....+..+.++|.|.++|      .++++.+
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p------~~~~~~~   96 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP------LINNRTN   96 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC------CTTSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc------CCCCcee
Confidence            5799999999999999999999965699999999986532  123 555443344567899999887      2467889


Q ss_pred             eeccceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCC-------CCCCCCCCCCCcceE
Q psy7388         135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPY-------LAKIDRYHATGGYLT  206 (224)
Q Consensus       135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~-------~~~~~~~hg~~Gpl~  206 (224)
                      .++|||+|||||+||+|+|+|+++.|||.|+.. |+++|+|++|+|||+|+|++..+.       ...+..+||.+|||+
T Consensus        97 ~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~Gpl~  176 (587)
T 1gpe_A           97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQ  176 (587)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEE
T ss_pred             eeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCCCEE
Confidence            999999999999999999999999999999987 999999999999999999987652       112356899999999


Q ss_pred             EeeC---CCCChhhhh
Q psy7388         207 VQDS---PWNTPLGFR  219 (224)
Q Consensus       207 v~~~---~~~~~~~~~  219 (224)
                      |+++   ...+|+.++
T Consensus       177 v~~~~~~~~~~~~~~~  192 (587)
T 1gpe_A          177 SGARDNGQPWSPIMKA  192 (587)
T ss_dssp             EBCCCCSSCBCTHHHH
T ss_pred             EccCCCcCCCCHHHHH
Confidence            9976   244554443

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.97  E-value=6.4e-31  Score=248.84  Aligned_cols=156  Identities=33%  Similarity=0.535  Sum_probs=129.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc--ccccchhhhhccCCCCCCccccCCCccccccccCCcee
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE--ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCV  135 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~--~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~  135 (224)
                      .+||+||||+|++|+++|.||+++++.+|||||+|+....  ..++|........+.++|.|.++||+.     .++.+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~-----~~~~~~   86 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQEN-----GNSFMR   86 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSS-----SCTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCC-----CCceEE
Confidence            4799999999999999999999986699999999986532  234454322223567899999999873     567899


Q ss_pred             eccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEeeCCCCC
Q psy7388         136 WTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNT  214 (224)
Q Consensus       136 ~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~~~~~~~  214 (224)
                      ++|||+|||+|++|+|+|+|+++.||+.|++ +|+++|+|++|+|||+|+|++..+..  +..+||.+||++++.+.+..
T Consensus        87 ~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~--~~~~~g~~Gpl~v~~~~~~~  164 (546)
T 2jbv_A           87 HARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGP--DAPHHGDSGPVHLMNVPPKD  164 (546)
T ss_dssp             ECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBT--TBTTSCBSCSEEEEECCSCC
T ss_pred             eecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCC--ccccCCCCCCEEEecCCCCC
Confidence            9999999999999999999999999999998 89999999999999999999876321  13589999999999887777


Q ss_pred             hhhhhc
Q psy7388         215 PLGFRC  220 (224)
Q Consensus       215 ~~~~~~  220 (224)
                      ++.+++
T Consensus       165 ~~~~~~  170 (546)
T 2jbv_A          165 PTGVAL  170 (546)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765543

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.91  E-value=8.6e-25  Score=204.91  Aligned_cols=127  Identities=19%  Similarity=0.211  Sum_probs=101.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccch---hhhhc-cCCCCCCccccCCCccc-------
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPV---LSLYL-HKSRFDWKYRTQPGTTA-------  125 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~---~~~~~-~~~~~~w~~~t~p~~~~-------  125 (224)
                      ..+||+||||+|++|+++|.||++.+ .+|+|||+|.....  ..|.   +.... ...+++|.|.++||...       
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~-~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~   85 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAG-IPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   85 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCC-CcEEEEECCCCCCC--CCCcccccccccccccccccccccccccccccccccc
Confidence            35799999999999999999999965 99999999986432  1222   11111 23468999999887210       


Q ss_pred             ----cccc------cCCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchH-HHHHHHHhcCCC
Q psy7388         126 ----CQAM------KDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL-PYFKKSMDQRNP  190 (224)
Q Consensus       126 ----~~~~------~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~-pyf~k~E~~~~p  190 (224)
                          +...      .++.+.++|||+|||||+||+|+|+|+++.|||.|.    ++|.|++|+ |||+|+|++..+
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~  157 (507)
T 1coy_A           86 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGV  157 (507)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTC
T ss_pred             ccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCC
Confidence                1122      567889999999999999999999999999999996    589999999 999999997653

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.90  E-value=3.1e-24  Score=200.88  Aligned_cols=127  Identities=20%  Similarity=0.216  Sum_probs=100.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc-cc--ccchhhhhccCCCCCCccccCCCc-----------
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE-IT--DVPVLSLYLHKSRFDWKYRTQPGT-----------  123 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~-~~--~~p~~~~~~~~~~~~w~~~t~p~~-----------  123 (224)
                      .+||+||||+|++|+++|.+|++.+ ++|+|||+|..... ..  ..+... ......++|.|.++||.           
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~-~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~~   81 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAG-VQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVVN   81 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGGC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC-CcEEEEeCCCCCCCCCCcccccccc-cccCcccccccccccccccccccccccc
Confidence            4799999999999999999999965 99999999985331 11  222111 12234578999998872           


Q ss_pred             ---ccccc----ccCCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchH-HHHHHHHhcCCC
Q psy7388         124 ---TACQA----MKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVL-PYFKKSMDQRNP  190 (224)
Q Consensus       124 ---~~~~~----~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~-pyf~k~E~~~~p  190 (224)
                         ..+.+    ..++.+.|+|||+|||||+||+|+|+|+++.|||.|.    ++|+|++|+ |||+|+|++..+
T Consensus        82 ~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~  152 (504)
T 1n4w_A           82 RNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRV  152 (504)
T ss_dssp             CBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTC
T ss_pred             ccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCC
Confidence               11111    1677899999999999999999999999999999996    689999999 999999997643

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.89  E-value=5.7e-24  Score=200.78  Aligned_cols=119  Identities=29%  Similarity=0.433  Sum_probs=91.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC--cccccc-hhhhhccCCCCCCccccCCCccccccccCCc
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET--EITDVP-VLSLYLHKSRFDWKYRTQPGTTACQAMKDKR  133 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~--~~~~~p-~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~  133 (224)
                      ..+|||||||||+|||++|.||+| + .+|||||+|+...  .....| .+...+..  .+| |.++||..    +.++.
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse-g-~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~--~~~-~~t~~q~~----~~~~~   94 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE-K-YKVLVLERGSLPTAYPNVLTADGFVYNLQQ--EDD-GKTPVERF----VSEDG   94 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT-T-SCEEEECSSBCGGGSGGGGBGGGHHHHHHS--CCC-SSSSEEEE----ECTTS
T ss_pred             cCcccEEEECccHHHHHHHHHHhc-C-CcEEEEecCCCcCCCcceecchhHhhhccC--CCc-CcCCCccc----cCCCc
Confidence            357999999999999999999999 5 8999999998642  111222 22111111  245 66777653    34667


Q ss_pred             eeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcC
Q psy7388         134 CVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR  188 (224)
Q Consensus       134 ~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~  188 (224)
                      +.++|||+|||+|+||+|+|+|+++.||+.+   | .+|+|++++|||+|+|+..
T Consensus        95 ~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~  145 (536)
T 1ju2_A           95 IDNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTI  145 (536)
T ss_dssp             CEEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHH
T ss_pred             ceeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhccc
Confidence            8899999999999999999999999999742   2 2599999999999999853

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.79  E-value=1.6e-19  Score=169.95  Aligned_cols=121  Identities=33%  Similarity=0.496  Sum_probs=82.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCccc--cc-chhhhhccCCCCCCc-----cccCCCccccccc
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEIT--DV-PVLSLYLHKSRFDWK-----YRTQPGTTACQAM  129 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~--~~-p~~~~~~~~~~~~w~-----~~t~p~~~~~~~~  129 (224)
                      .+|||||||+|++|+++|.||++++ ++|||||+|+......  .+ +..........+++.     ....+...    .
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g-~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~   80 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAG-KKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----W   80 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----T
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCcc----c
Confidence            5799999999999999999999986 8999999998543110  00 000000000000000     00001100    0


Q ss_pred             cCCceeeccceEecCCccccceeeecCChhhhHH---HhhCCCCCCChhchHHHHHHHHhcCC
Q psy7388         130 KDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQ---WAADGNEGWSYEEVLPYFKKSMDQRN  189 (224)
Q Consensus       130 ~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~---w~~~G~~gWsy~~l~pyf~k~E~~~~  189 (224)
                      ......+++|++|||+|++|+|+|+|+++.||+.   |.    .+|+|++  |||+|+|+...
T Consensus        81 ~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W~----~~w~~~~--p~~~k~e~~~~  137 (546)
T 1kdg_A           81 WCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGWP----SSWTNHA--PYTSKLSSRLP  137 (546)
T ss_dssp             BCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTCC----GGGSCCH--HHHHHHHHHSC
T ss_pred             cccccccccceeecccccccceEEecCChHHhcCcccCc----cccCccc--HHHHHHHhcCC
Confidence            1123557899999999999999999999999998   83    6899998  99999998653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.66  E-value=1.7e-08  Score=80.76  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|++|||+|+||+++|..|++.+ .+|+|||+.+.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G-~~V~v~Ek~~~   36 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAG-HQVHLFDKSRG   36 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence            589999999999999999999997 99999999754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.56  E-value=3.5e-08  Score=86.41  Aligned_cols=36  Identities=33%  Similarity=0.561  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|++|+++|..|++.| .+|+|||+.+.
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G-~~V~v~Er~~~   38 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYG-LKTLMIEKRPE   38 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            3699999999999999999999997 99999999764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.37  E-value=6e-07  Score=86.03  Aligned_cols=38  Identities=29%  Similarity=0.568  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+||+||||+|.+|+.+|..|++.+ .+|+|||++...
T Consensus        44 ~~~~dvvIIG~G~aGl~aA~~l~~~G-~~V~liE~~~~~   81 (623)
T 3pl8_A           44 DIKYDVVIVGSGPIGCTYARELVGAG-YKVAMFDIGEID   81 (623)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCCC
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhCC-CcEEEEeccCCC
Confidence            35799999999999999999999987 899999998753

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.29  E-value=4.8e-07  Score=78.56  Aligned_cols=35  Identities=34%  Similarity=0.529  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~G-~~V~vlE~~~   37 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAGG-HEVLVAEAAE   37 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            4699999999999999999999987 8999999985

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.28  E-value=5.6e-07  Score=77.46  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g-~~v~lie~~~   39 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRAR-KQIALFDNNT   39 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence            5799999999999999999999986 8999999874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.26  E-value=7e-07  Score=76.78  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g-~~V~liE~~~   39 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRAN-LKTVMIERGI   39 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Confidence            3699999999999999999999987 8999999874

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.25  E-value=5.7e-07  Score=76.91  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~g-~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRSS-LKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEecCC
Confidence            4699999999999999999999987 8999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.24  E-value=7.5e-07  Score=79.14  Aligned_cols=36  Identities=39%  Similarity=0.609  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|+||||+|.+|+.+|..|++.+ .+|+|||++..
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~G-~~V~vlE~~~~   38 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAERG-HRVLVLERHTF   38 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence            4699999999999999999999997 89999999864

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.23  E-value=6.3e-07  Score=81.92  Aligned_cols=38  Identities=21%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+|+||||||.+|+++|.+|++..+.+|+|||+....
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            46999999999999999999998534899999997653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.20  E-value=1.2e-06  Score=78.96  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|.+|++.+ . +|+|||++..
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G-~~~V~vlE~~~~   41 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRG-YTNVTVLDPYPV   41 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcC-CCcEEEEeCCCC
Confidence            5799999999999999999999997 7 9999999875

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.19  E-value=1.3e-06  Score=76.17  Aligned_cols=38  Identities=32%  Similarity=0.507  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~   94 (224)
                      ..++|+||||+|+||+++|.+|++ ..+.+|+|+|++..
T Consensus        63 ~~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~  101 (326)
T 3fpz_A           63 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence            357999999999999999999986 33599999999754

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.18  E-value=1.1e-06  Score=81.63  Aligned_cols=37  Identities=30%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+||+||||+|.+|+++|.+|++.+ .+|+|||+++.
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G-~~V~vlEk~~~   75 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAG-ADVLVLERTSG   75 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            45799999999999999999999997 89999999875

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.18  E-value=1.3e-06  Score=79.92  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +..++|+||||+|.+|+++|.+|++.| ++|+|||+....
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G-~~V~vlE~~~~~   46 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDG-KKVLHIDKQDHY   46 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCCCC
Confidence            346799999999999999999999987 899999998654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.15  E-value=1.5e-06  Score=76.51  Aligned_cols=37  Identities=30%  Similarity=0.530  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..++|+||||+|.+|+.+|.+|++.+ .+|+|||++..
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~G-~~V~llE~~~~   51 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKEN-KNTALFESGTM   51 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCC-CcEEEEeCCCC
Confidence            35799999999999999999999987 89999999753

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.13  E-value=2.1e-06  Score=75.49  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..++|+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~~G-~~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILARKG-YSVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCC-CEEEEEeccC
Confidence            35799999999999999999999987 8999999864

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.13  E-value=1.8e-06  Score=77.14  Aligned_cols=38  Identities=24%  Similarity=0.172  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+.||+||||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G-~~V~v~E~~~~~   58 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSG-IDCDVYEAVKEI   58 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCCCC
Confidence            46799999999999999999999997 899999998653

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.12  E-value=1.7e-06  Score=77.58  Aligned_cols=33  Identities=55%  Similarity=0.737  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||+||||+|.+|+++|.+|++.+ .+|+|||+..
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G-~~V~vlE~~~   34 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAG-KKVLLLEGGE   34 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHHcC-CeEEEEecCC
Confidence            89999999999999999999997 8999999954

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.12  E-value=2.1e-06  Score=75.60  Aligned_cols=35  Identities=26%  Similarity=0.437  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.+|+.+|.+|++.+ .+|+|||++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~G-~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKRG-EEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            5799999999999999999999987 8999999984

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.09  E-value=2.2e-06  Score=75.37  Aligned_cols=35  Identities=37%  Similarity=0.536  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+||||+|.+|+.+|.+|++.+ .+|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G-~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQG-VKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCCC
Confidence            699999999999999999999987 89999999864

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.08  E-value=2.4e-06  Score=76.23  Aligned_cols=35  Identities=31%  Similarity=0.547  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|++|+.+|..|++.+ .+|+|||+..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G-~~V~v~E~~~   38 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSG-FKVKIVEKQK   38 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTT-CCEEEECSSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCC
Confidence            3599999999999999999999987 8999999985

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.07  E-value=2e-06  Score=75.40  Aligned_cols=35  Identities=29%  Similarity=0.501  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+||||+|.+|+.+|.+|++.+ .+|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G-~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAG-LNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTT-CCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            589999999999999999999987 89999999864

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.05  E-value=3e-06  Score=78.95  Aligned_cols=40  Identities=25%  Similarity=0.285  Sum_probs=35.7

Q ss_pred             hcCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          55 KLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        55 ~~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+.++||+||||+|.+|+++|.+|++.+ .+|+|||+++..
T Consensus        16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g-~~v~~~e~~~~~   55 (475)
T 3p1w_A           16 FQGEHYDVIILGTGLKECILSGLLSHYG-KKILVLDRNPYY   55 (475)
T ss_dssp             -CCCEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             cccccCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeccCCC
Confidence            4557899999999999999999999987 899999998754

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.03  E-value=3.4e-06  Score=75.28  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +|+||||+|.+|+.+|.+|++.+ .+|+|||++..
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G-~~V~vlE~~~~   34 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAG-HEVEVFERLPI   34 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CceEEEeCCCC
Confidence            58999999999999999999997 89999999764

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.03  E-value=3.5e-06  Score=76.84  Aligned_cols=37  Identities=22%  Similarity=0.419  Sum_probs=32.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+||+||||+|++|+.+|..|++.+ .+|+|||+++.
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G-~~V~llEk~~~   61 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRG-RRVLVIDHARA   61 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            45799999999999999999999987 89999999875

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.03  E-value=3.5e-06  Score=79.56  Aligned_cols=35  Identities=26%  Similarity=0.386  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|.+|+.+|..|++.| .+|+|||++.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G-~~V~LlEk~d   51 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRG-IQTGLVEMND   51 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTT-CCEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC-CcEEEEECCC
Confidence            5799999999999999999999987 9999999984

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.02  E-value=4.4e-06  Score=69.61  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ++||+||||+|++|+.+|..|++.+ .+|+|||++
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g-~~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKG-VRVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT-CCEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEecC
Confidence            3699999999999999999999986 899999997

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.02  E-value=3e-06  Score=77.25  Aligned_cols=36  Identities=36%  Similarity=0.696  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G-~~V~vlE~~~~   40 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRG-LKILLVDSKPW   40 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSS-CCEEEECSSCG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence            4699999999999999999999987 89999999864

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.01  E-value=3.2e-06  Score=74.74  Aligned_cols=37  Identities=38%  Similarity=0.474  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~   93 (224)
                      ..++|+||||+|.+|+.+|.+|++ .+..+|+|||++.
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            357999999999999999999999 7547999999986

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.01  E-value=4.6e-06  Score=71.69  Aligned_cols=37  Identities=43%  Similarity=0.600  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+.+|..|++.++.+|+|||+.+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence            4699999999999999999999962499999999864

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.01  E-value=3.6e-06  Score=75.90  Aligned_cols=37  Identities=35%  Similarity=0.566  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .+++|+||||+|.+|+++|.+|++. + .+|+|||+...
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g-~~v~v~E~~~~   42 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLD-KRVLVLERRPH   42 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSC-CCEEEECSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            3579999999999999999999998 5 89999999864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.00  E-value=3.5e-06  Score=76.33  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|++|+.+|.+|++.+ .+|+|||+++.
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~~G-~~V~vlEk~~~   38 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAKLG-KSVTVFDNGKK   38 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            3699999999999999999999987 89999999874

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.98  E-value=4.2e-06  Score=73.15  Aligned_cols=35  Identities=34%  Similarity=0.558  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|+||||+|.+|+.+|.+|+ .+ .+|+|||++..
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G-~~V~vlE~~~~   42 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AH-GRVVVLEREAQ   42 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TT-SCEEEECSSSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CC-CCEEEEECCCC
Confidence            4799999999999999999999 45 89999999853

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.97  E-value=5.2e-06  Score=74.13  Aligned_cols=35  Identities=46%  Similarity=0.698  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||++|||+|.+|+++|.+|++.+ .+|+|||++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g-~~v~v~E~~~~   35 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLN-KKVLVIEKRNH   35 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGT-CCEEEECSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCC-CcEEEEecCCC
Confidence            389999999999999999999986 89999999864

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.96  E-value=5.7e-06  Score=75.51  Aligned_cols=36  Identities=44%  Similarity=0.725  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+.+|..|++.+ .+|+|||+.+.
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G-~~V~llEk~~~   60 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEG-ANVLLLDKGNK   60 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence            4699999999999999999999987 89999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.96  E-value=4.5e-06  Score=76.45  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|++|+.+|.+|++.+ .+|+|||+++
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G-~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLG-LKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHT-CCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCC-CEEEEEeCCC
Confidence            4699999999999999999999987 8999999985

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.93  E-value=7e-06  Score=73.00  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|+||||+|++|+.+|..|++.+ .+|+|||+.+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G-~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQG-HRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCC-CcEEEEeCCCCC
Confidence            3699999999999999999999987 899999998643

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.92  E-value=5.6e-06  Score=74.38  Aligned_cols=36  Identities=33%  Similarity=0.566  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC--CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN--PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~--~~~~VLlLEaG~~   94 (224)
                      +++|+||||+|.+|+.+|..|++.  + .+|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG-~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPG-RSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTT-SCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCC-CeEEEEeCCCC
Confidence            469999999999999999999997  6 89999999753

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.92  E-value=7.3e-06  Score=75.96  Aligned_cols=35  Identities=37%  Similarity=0.526  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|.+|+.+|..|++.+ .+|+|||++.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G-~~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRG-LSVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCC-CCEEEEECCC
Confidence            3699999999999999999999987 8999999975

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.92  E-value=9.3e-06  Score=72.45  Aligned_cols=36  Identities=25%  Similarity=0.438  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   60 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNG-IDVSVYERDND   60 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTT-CEEEEEECSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            5699999999999999999999987 89999999764

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.92  E-value=8.2e-06  Score=70.13  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=32.4

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +..++|+||||+|++|+.+|.+|++.+ .+|+|||+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~   48 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSG-FSVAILDKA   48 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCC-CcEEEEeCC
Confidence            345799999999999999999999987 899999995

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.92  E-value=7.7e-06  Score=77.93  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|+||||+|++|+.+|..|++.+ .+|+|||+...
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G-~~V~LiEr~~~   57 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLG-HDVTIYERSAF   57 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCC-CCEEEEcCCCC
Confidence            4699999999999999999999987 89999999853

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.91  E-value=7.4e-06  Score=73.44  Aligned_cols=33  Identities=27%  Similarity=0.451  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |+||||+|.+|+.+|.+|++.+ .+|+|||+...
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G-~~V~vlE~~~~   34 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNG-HEIIVLEKSAM   34 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence            8999999999999999999987 89999999754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.91  E-value=8.2e-06  Score=78.63  Aligned_cols=35  Identities=26%  Similarity=0.254  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|.+|+.+|.+|++.+ ++|+|||++.
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G-~~V~vlEk~~  297 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRG-AVVTLYCADA  297 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTT-CCEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence            4599999999999999999999987 8999999974

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.91  E-value=6.7e-06  Score=72.90  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+||||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAG-IDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHT-CCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            589999999999999999999987 89999999864

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.91  E-value=9.2e-06  Score=75.52  Aligned_cols=39  Identities=31%  Similarity=0.325  Sum_probs=34.7

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+++|+||||+|++|+++|..|++.+ ++|+|||+.+..
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~~G-~~v~vlE~~~~~   46 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRLAG-VEVVVLERLVER   46 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTT-CCEEEEESCCC-
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCCC
Confidence            356899999999999999999999987 999999998653

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.91  E-value=6.9e-06  Score=77.31  Aligned_cols=36  Identities=33%  Similarity=0.396  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +++|+||||+|.+|+.+|..|++.+ .+|+|||+.+.
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G-~~V~vlEk~~~  160 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSG-AKVILIEKEPV  160 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            4799999999999999999999987 89999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.90  E-value=8.1e-06  Score=75.18  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|+.+|.+|++.+ .+|+|||++.
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G-~~V~liEk~~   59 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALG-KRVAIAEEYR   59 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCc-CEEEEEeCCC
Confidence            4699999999999999999999987 8999999953

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.90  E-value=8.3e-06  Score=73.07  Aligned_cols=36  Identities=28%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~~   94 (224)
                      .++|+||||+|++|+++|..|++.+ .+ |+|||+.+.
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~~G-~~~v~v~E~~~~   39 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQAG-IGKVTLLESSSE   39 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC-CCeEEEEECCCC
Confidence            3699999999999999999999987 89 999999764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.90  E-value=6.4e-06  Score=78.12  Aligned_cols=36  Identities=39%  Similarity=0.580  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC------CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN------PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~------~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+++|.+|++.      + .+|+|||++..
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G-~~V~vlEk~~~   75 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKD-LRVCLVEKAAH   75 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCC-CCEEEECSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCC-CcEEEEeCCCC
Confidence            469999999999999999999987      5 89999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.89  E-value=8.7e-06  Score=76.99  Aligned_cols=35  Identities=31%  Similarity=0.468  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|.+|+.+|..|++.+ .+|+|||++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG-~~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASG-IKTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence            4799999999999999999999997 8999999985

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.89  E-value=7.8e-06  Score=73.26  Aligned_cols=37  Identities=38%  Similarity=0.579  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+.+|..|++. ++.+|+|||++..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~  115 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVA  115 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            469999999999999999999996 3489999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.89  E-value=7.2e-06  Score=70.32  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ...+|+||||+|++|+.+|.+|++.+ .+|+|||+.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAE-IKPILYEGMM   55 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTT-CCCEEECCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEecCC
Confidence            46799999999999999999999987 8999999954

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.89  E-value=7.8e-06  Score=75.88  Aligned_cols=36  Identities=36%  Similarity=0.630  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|++|+.+|..|++.+ .+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G-~~V~liE~~~~   41 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRG-HRVLLLEREAF   41 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTT-CCEEEECSSCS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCC-CCEEEEccCCC
Confidence            4699999999999999999999986 89999999863

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.88  E-value=9.8e-06  Score=71.73  Aligned_cols=37  Identities=35%  Similarity=0.403  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+|+||||+|++|+.+|..|++.+ .+|+|||+.+..
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G-~~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNG-WDVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CCEEEEecCCCC
Confidence            3699999999999999999999987 899999998653

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.87  E-value=1e-05  Score=74.87  Aligned_cols=36  Identities=36%  Similarity=0.561  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|.+|+++|.+|++.+ .+|+|||+...
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~~G-~~V~vlE~~~~   38 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHDSG-LNVVVLEARDR   38 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            4689999999999999999999987 89999999754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.87  E-value=7.2e-06  Score=74.97  Aligned_cols=33  Identities=36%  Similarity=0.431  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||||||.+|+++|.+|+++| ++|+|||+...
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G-~~V~VlEa~~~   35 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAG-IPVLLLEQRDK   35 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTT-CCEEEECCC--
T ss_pred             CEEEECCcHHHHHHHHHHHHCC-CcEEEEccCCC
Confidence            6999999999999999999997 89999999653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.87  E-value=1e-05  Score=73.92  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|+.+|.+|++.+ .+|+|||++.
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G-~~V~liEk~~   38 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALG-KKVAIAEEFR   38 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTT-CCEEEEESSC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCC-CEEEEEeCCC
Confidence            3699999999999999999999987 8999999943

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.87  E-value=1.2e-05  Score=73.30  Aligned_cols=38  Identities=32%  Similarity=0.358  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+++|+||||+|.+|+++|.+|++.+ ++|+|||+....
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~~g-~~v~~~e~~~~~   41 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSVNG-KKVLHMDRNPYY   41 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCCCc
Confidence            45799999999999999999999987 899999997643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.87  E-value=8.9e-06  Score=74.54  Aligned_cols=35  Identities=37%  Similarity=0.709  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|+.+|.+|++.+ .+|+|||+.+
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~G-~~V~liEk~~   37 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKAK-YNVLMADPKG   37 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECTTS
T ss_pred             ccceEEEECCCHHHHHHHHHHHhCC-CeEEEEECCC
Confidence            3699999999999999999999987 8999999654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.87  E-value=1e-05  Score=77.57  Aligned_cols=35  Identities=26%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+|+||||+|.+|+.+|.+|++.+ ++|+|||+..
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G-~~V~vlEk~~  305 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRG-WQVTLYCADE  305 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            3599999999999999999999987 8999999964

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.86  E-value=1.2e-05  Score=74.01  Aligned_cols=34  Identities=41%  Similarity=0.562  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|||++
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G-~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNG-ARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT-CCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CEEEEEEec
Confidence            5799999999999999999999987 899999943

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.86  E-value=1.2e-05  Score=67.65  Aligned_cols=34  Identities=35%  Similarity=0.625  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .||++|||+|++|+.+|.+|++.+ .+|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRAR-KNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCC
Confidence            489999999999999999999987 8999999864

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.86  E-value=6.9e-06  Score=77.33  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|..|++.+ .+|+|||+.+.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G-~~V~vlEk~~~  155 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAG-ANVILVDKAPF  155 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHT-CCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            5799999999999999999999987 89999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.86  E-value=1.1e-05  Score=73.39  Aligned_cols=36  Identities=36%  Similarity=0.723  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|.+|+++|.+|++.+ .+|+|||+...
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g-~~v~v~E~~~~   63 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSG-QRVLIVDRRPH   63 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCC-CceEEEeccCC
Confidence            5799999999999999999999986 89999999764

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.85  E-value=1.1e-05  Score=73.23  Aligned_cols=37  Identities=32%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+|+||||+|.+|+++|.+|++.+ .+|+|||+...
T Consensus        14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g-~~v~v~E~~~~   50 (478)
T 2ivd_A           14 TTGMNVAVVGGGISGLAVAHHLRSRG-TDAVLLESSAR   50 (478)
T ss_dssp             ---CCEEEECCBHHHHHHHHHHHTTT-CCEEEECSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCC
Confidence            35799999999999999999999987 89999999764

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.85  E-value=7.3e-06  Score=74.10  Aligned_cols=34  Identities=32%  Similarity=0.493  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +++|+||||+|.+|+.+|.+|++.+..+|+|||+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~   55 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA   55 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence            5799999999999999999999986369999999

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.84  E-value=1.3e-05  Score=73.23  Aligned_cols=37  Identities=35%  Similarity=0.446  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+.+|+||||+|.+|+++|.+|++.+ .+|+|||+...
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g-~~v~v~E~~~~   45 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAG-YKVTVLEARTR   45 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEeccCC
Confidence            35789999999999999999999987 89999999865

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.84  E-value=1.1e-05  Score=76.74  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|.+|++.+ .+|+|||++..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G-~~V~vlEK~~~   41 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSG-QTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            4699999999999999999999987 89999999864

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.84  E-value=1.1e-05  Score=75.97  Aligned_cols=35  Identities=31%  Similarity=0.581  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|.+|++ + .+|+|||++..
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G-~~V~vlEk~~~   41 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-Q-HQVIVLSKGPV   41 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-T-SCEEEECSSCT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-C-CcEEEEECCCC
Confidence            46999999999999999999999 6 89999999864

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.84  E-value=1.3e-05  Score=73.91  Aligned_cols=36  Identities=36%  Similarity=0.575  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|+||+.+|.+|++.+ .+|+|||+.+.
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G-~~V~liEk~~~   59 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLG-MKVAVVEKRST   59 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTT-CCEEEEESSSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            4699999999999999999999987 89999998643

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.83  E-value=1.5e-05  Score=63.07  Aligned_cols=34  Identities=44%  Similarity=0.665  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||++|||+|++|+.+|..|++.+ .+|+|||+++.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g-~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAG-LKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            79999999999999999999986 89999999863

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.83  E-value=1.2e-05  Score=75.98  Aligned_cols=34  Identities=32%  Similarity=0.646  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|+||.++|.|+++.+ .||+|||...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G-~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHG-ARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTT-CCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeccc
Confidence            599999999999999999999987 9999999654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.83  E-value=1.3e-05  Score=74.20  Aligned_cols=34  Identities=29%  Similarity=0.465  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|+|+++
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~~G-~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKKHT-DKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTC-SCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCC-CcEEEEeCCC
Confidence            599999999999999999999987 8999999975

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.82  E-value=1.4e-05  Score=74.28  Aligned_cols=37  Identities=32%  Similarity=0.354  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|+||||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G-~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQG-VRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTT-CCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCCC
Confidence            4699999999999999999999987 899999998753

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.82  E-value=1.4e-05  Score=67.86  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..+|+||||+|++|+.+|.+|++.+ .+|+|+|+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYM-LKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHHCC-CcEEEEecc
Confidence            4699999999999999999999986 899999995

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.82  E-value=1e-05  Score=76.64  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+.+|.+|++.+ .+|+|||+++.
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G-~kV~VlEr~~~  141 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMG-FNPIIVERGKE  141 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTT-CCCEEECSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CeEEEEEccCc
Confidence            4599999999999999999999987 89999999964

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.81  E-value=1.6e-05  Score=70.92  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+++|..|++.+ .+|+|||+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G-~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAG-VDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence            4689999999999999999999987 99999999865

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.81  E-value=1.5e-05  Score=74.11  Aligned_cols=38  Identities=32%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ++++|+||||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G-~~v~vlE~~~~~   47 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGG-VDVMVLEQLPQR   47 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESCSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCCCC
Confidence            36799999999999999999999987 999999997643

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.81  E-value=1.3e-05  Score=69.05  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .||+||||+|++|+.+|.+|++.+ .+|+|||+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g-~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSG-LSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSS-CCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCCC
Confidence            599999999999999999999986 89999999864

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.81  E-value=1.4e-05  Score=75.62  Aligned_cols=37  Identities=32%  Similarity=0.453  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+||+||||+|++|+++|..|++.+ ++|+|||+.+..
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G-~~V~VlEr~~~~   84 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGG-VGALVLEKLVEP   84 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTT-CCEEEEBSCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEcCCCCC
Confidence            4699999999999999999999987 899999998653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.81  E-value=1.4e-05  Score=77.19  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|.||+.+|..|++.+ .+|+|||++.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G-~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMG-QQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCC-CCEEEEeecc
Confidence            5799999999999999999999987 8999999874

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.81  E-value=1.6e-05  Score=69.61  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.+|+||||+|++|+.+|..|++.+ .+|+|||+.+.
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~~   48 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNN-ISCRIIESMPQ   48 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence            4699999999999999999999986 89999999754

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.80  E-value=1e-05  Score=70.68  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCC-----CCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP-----NWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~-----~~~VLlLEaG~   93 (224)
                      |+||||+|.+|+.+|..|++.+     +.+|+|||++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            8999999999999999999984     48999999985

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.80  E-value=1.3e-05  Score=73.78  Aligned_cols=33  Identities=30%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|||+
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G-~~V~liEk   37 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLG-KKVAVADY   37 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC-CeEEEEEe
Confidence            5799999999999999999999987 89999997

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.80  E-value=1.5e-05  Score=69.55  Aligned_cols=33  Identities=21%  Similarity=0.448  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~   93 (224)
                      +|+||||+|.+|+++|..|++   .+ .+|+|+|+++
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G-~~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGP-LYLAVWDKAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CC-EEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCC-ceEEEEECCC
Confidence            699999999999999999999   76 8999999975

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.80  E-value=1.8e-05  Score=68.23  Aligned_cols=36  Identities=14%  Similarity=0.197  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+.+|.+|++.+ .+|+|+|+.+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~~   39 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRG-LSFRFVDPLPE   39 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            4699999999999999999999986 89999999753

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.79  E-value=1.5e-05  Score=76.50  Aligned_cols=36  Identities=33%  Similarity=0.338  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.||+.+|..|++.+ .+|+|||+...
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G-~~V~vlEK~~~   52 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAG-FNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCG
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCC-CcEEEEeccCC
Confidence            5799999999999999999999987 89999999853

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.78  E-value=1.6e-05  Score=71.73  Aligned_cols=36  Identities=28%  Similarity=0.459  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+++|.+|++.+ .+|+|||+...
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g-~~v~v~E~~~~   39 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAG-LSVAVIEARDR   39 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CcEEEEECCCC
Confidence            3689999999999999999999986 89999999754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.78  E-value=1.6e-05  Score=76.75  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|..|++.+ .+|+|||++..
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G-~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKG-LSTIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTT-CCEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHHCC-CcEEEEeccCC
Confidence            4699999999999999999999987 89999999764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.78  E-value=1.6e-05  Score=67.95  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+.+|.+|++.+ .+|+|||+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie~~~~   41 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQ-ASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCC-CCEEEEEcCCC
Confidence            3599999999999999999999986 89999999763

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.78  E-value=1.7e-05  Score=71.87  Aligned_cols=34  Identities=35%  Similarity=0.606  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC--eEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNW--KVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~~   94 (224)
                      +|+||||+|.+|+++|.+|++.+ .  +|+|||+...
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G-~~~~V~vlEa~~~   38 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAP-CPPKVVLVESSER   38 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSS-SCCEEEEECSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCC-CCCcEEEEeCCCC
Confidence            69999999999999999999987 7  9999999653

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.78  E-value=1.4e-05  Score=72.48  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+|+||||+|++|+++|..|++.+ .+|+|||+..
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G-~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHD-VDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTT-CEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCC-CeEEEEcCCC
Confidence            3589999999999999999999997 9999999876

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.78  E-value=1.1e-05  Score=72.70  Aligned_cols=36  Identities=22%  Similarity=0.396  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC-----CCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP-----NWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~-----~~~VLlLEaG~~   94 (224)
                      .+|+||||+|.+|+++|.+|++.+     +.+|+|||+...
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~   45 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPR   45 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCC
Confidence            589999999999999999999975     289999999753

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.77  E-value=1.7e-05  Score=72.57  Aligned_cols=35  Identities=40%  Similarity=0.646  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|+||||+|.+|+.+|.+|++.+ .+|+|||+...
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g-~~v~v~E~~~~   73 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAG-FKTLLLEARDR   73 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTT-CCEEEECSSSB
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            499999999999999999999987 89999999754

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.77  E-value=1.8e-05  Score=68.22  Aligned_cols=34  Identities=35%  Similarity=0.651  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..+|++|||+|++|+.+|.+|++.+ .+|+|||+.
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~v~lie~~   40 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQ-LSTLILEKG   40 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcC-CcEEEEeCC
Confidence            4699999999999999999999986 899999997

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.77  E-value=1.9e-05  Score=72.07  Aligned_cols=35  Identities=40%  Similarity=0.591  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAMYG-QKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTT-CCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCC-CeEEEEcCCC
Confidence            4699999999999999999999976 8999999974

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.77  E-value=1.7e-05  Score=76.33  Aligned_cols=35  Identities=29%  Similarity=0.386  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|.||+.+|..|++.+ .+|+|||++.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G-~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMG-AKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTT-CCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CCEEEEEecc
Confidence            4699999999999999999999987 8999999974

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.76  E-value=2.3e-05  Score=70.10  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.+|+||||+|.+|+++|.+|++.+..+|+|+|+...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~   41 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDH   41 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            4689999999999999999999975369999999654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.76  E-value=2e-05  Score=72.15  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+.+|+||||+|.+|+++|.+|++.+ .+|+|||+...
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~~g-~~v~v~E~~~~   47 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKIHG-LNVTVFEAEGK   47 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHTTS-CEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCC-CcEEEEEeCCC
Confidence            35699999999999999999999987 89999999865

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.75  E-value=2.1e-05  Score=72.15  Aligned_cols=35  Identities=34%  Similarity=0.588  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..||+||||+|++|+.+|.+|++.+ .+|+|||++.
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G-~~V~liE~~~   53 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELG-ARAAVVESHK   53 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC-CeEEEEecCC
Confidence            4699999999999999999999987 8999999774

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.75  E-value=2e-05  Score=75.66  Aligned_cols=36  Identities=31%  Similarity=0.479  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHh---c-CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLS---E-NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLa---e-~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|.||+.+|.+|+   + .+ .+|+|||++..
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G-~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGG-LKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTT-CCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCC-CeEEEEeCcCC
Confidence            5799999999999999999999   5 66 89999999864

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.75  E-value=2.1e-05  Score=72.14  Aligned_cols=35  Identities=34%  Similarity=0.586  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g-~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFG-KRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCC-CcEEEEcCCC
Confidence            4699999999999999999999976 8999999974

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.75  E-value=2.1e-05  Score=73.38  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+++|..|++   .+ .+|+|||+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G-~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQQ-ANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCSS-CEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCCC-CEEEEECCCCC
Confidence            36899999999999999999999   76 89999999653

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.74  E-value=1.8e-05  Score=73.28  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|.+|+++|.+|++.+..+|+|||+...
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~r   43 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR   43 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence            3689999999999999999999985479999999754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.74  E-value=1.8e-05  Score=72.39  Aligned_cols=35  Identities=29%  Similarity=0.511  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|+.+|.+|++.+ .+|+|+|+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~   38 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLG-FNTACVEKRG   38 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            4699999999999999999999986 8999999954

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.73  E-value=2e-05  Score=77.34  Aligned_cols=36  Identities=22%  Similarity=0.546  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~~   94 (224)
                      +++|+||||+|.+|+.+|.+|++.+ . +|+|||++..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~G-~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTRG-WNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHTT-CCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCC-CCcEEEEeCCCC
Confidence            4699999999999999999999987 6 8999999864

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.73  E-value=2.1e-05  Score=75.78  Aligned_cols=36  Identities=33%  Similarity=0.420  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+||+||||+|.||+.+|..|++.+ .+|+|||+..
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr~G-~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVARGG-LHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCC-CcEEEEEecc
Confidence            35799999999999999999999987 8999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.72  E-value=2.2e-05  Score=73.17  Aligned_cols=34  Identities=35%  Similarity=0.633  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|+.
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G-~~V~liEk~   64 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYG-KKVMVLDFV   64 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT-CCEEEECCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC-CeEEEEecc
Confidence            5799999999999999999999987 899999984

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.72  E-value=2.5e-05  Score=71.45  Aligned_cols=35  Identities=31%  Similarity=0.557  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|+|+.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLG-MKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence            599999999999999999999986 89999999853

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.72  E-value=2.9e-05  Score=72.30  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ....+|+||||+|++|..+|.+|++.+ .+|+|||++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G-~~V~liE~~~   76 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMG-GRQLIVDRWP   76 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence            456799999999999999999999986 8999999987

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.72  E-value=1.8e-05  Score=76.46  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-----CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-----PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-----~~~~VLlLEaG~~   94 (224)
                      .+||+||||||.||+.+|.+|++.     ++.+|+|||++..
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            469999999999999999999996     2389999999753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.71  E-value=2.5e-05  Score=68.09  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCC-eEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~   93 (224)
                      +||+||||+|++|+.+|.+|++.+ . +|+|||+..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g-~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFG-ITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT-CCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcC-CCcEEEEecCC
Confidence            599999999999999999999986 7 999999985

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.71  E-value=3.6e-05  Score=71.48  Aligned_cols=37  Identities=27%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+|+||||+|++|+.+|..|++.+ .+|+|||+.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~~G-~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELALLG-ARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHHCC-CeEEEEEeccc
Confidence            35799999999999999999999987 89999999864

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.71  E-value=2.5e-05  Score=71.84  Aligned_cols=35  Identities=43%  Similarity=0.678  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|..+|.+|++.+ .+|+|+|++.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g-~~V~liE~~~   44 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYG-AKTLLVEAKA   44 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTS-CCEEEEESSC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence            4799999999999999999999986 8999999974

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.71  E-value=2.3e-05  Score=69.66  Aligned_cols=37  Identities=35%  Similarity=0.534  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .+||++|||+|++|+.+|..|++. ++.+|+|+|+++.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~  101 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA  101 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcc
Confidence            568999999999999999999986 1389999999754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.71  E-value=2.8e-05  Score=71.01  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|..+|.+|++.+ .+|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVEQG-AQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCC
Confidence            4699999999999999999999986 8999999983

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.70  E-value=2.6e-05  Score=71.04  Aligned_cols=34  Identities=35%  Similarity=0.516  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|+|+++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~   34 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQLG-MKVGVVEKEK   34 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             CCCEEEECCChhHHHHHHHHHHCC-CeEEEEeCCC
Confidence            489999999999999999999986 8999999985

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.70  E-value=2.9e-05  Score=71.86  Aligned_cols=34  Identities=44%  Similarity=0.671  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g-~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHN-AKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence            599999999999999999999986 8999999985

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.69  E-value=1.7e-05  Score=73.19  Aligned_cols=35  Identities=34%  Similarity=0.546  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~   94 (224)
                      .+|+||||+|++|+++|..|++   .+ .+|+|||+...
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G-~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDR-IDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGG-SEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCC-CEEEEEecCCC
Confidence            4799999999999999999999   86 89999999753

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.69  E-value=2.3e-05  Score=72.01  Aligned_cols=35  Identities=34%  Similarity=0.540  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|..+|.+|++.+ .+|+|||+.+
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G-~~V~liE~~~   39 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEG-LKVAIVERYK   39 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            4699999999999999999999986 8999999954

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.69  E-value=2.7e-05  Score=66.36  Aligned_cols=32  Identities=28%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC-eEEEeecC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAG   92 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG   92 (224)
                      ||++|||+|++|+.+|..|++.+ . +|+|||+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g-~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGG-VKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT-CSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHHCC-CCcEEEEcCC
Confidence            89999999999999999999986 8 99999985

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.69  E-value=3e-05  Score=74.19  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLEaG~~   94 (224)
                      .+++|+||||+|++|+++|..|++ .+ .+|+|||+.+.
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~G-~~V~viEr~~~   67 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFPD-IRTCIVEQKEG   67 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCTT-SCEEEECSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            457999999999999999999999 87 99999999764

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.69  E-value=2.7e-05  Score=73.08  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|+||||+|++|+++|..|++.+ .+|+|||+.+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G-~~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQ-VGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCCC
Confidence            4699999999999999999999987 999999998643

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.68  E-value=3e-05  Score=66.05  Aligned_cols=32  Identities=28%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +||+||||+|++|+.+|.+|++.+ .+|+|||.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g-~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKG-IRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTT-CCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeC
Confidence            489999999999999999999986 89999986

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.66  E-value=3.8e-05  Score=74.13  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=36.1

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      +..+|||||||+|..|+++|..|++.| +|||+||+.....
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g-~~vl~id~~~~~g   44 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSG-QRVLHVDSRSYYG   44 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSSC
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCC-CEEEEEcCCCccc
Confidence            446899999999999999999999997 8999999988653

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.65  E-value=3.3e-05  Score=71.26  Aligned_cols=31  Identities=26%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      |+||||+|.+|+.+|.+|++.+ .+|+|||++
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G-~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAG-KKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCC-CCEEEEeCC
Confidence            8999999999999999999987 899999998

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.65  E-value=3.2e-05  Score=70.81  Aligned_cols=35  Identities=26%  Similarity=0.467  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|||+.+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g-~~V~liE~~~   39 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLG-FKTVCIEKNE   39 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            4699999999999999999999986 8999999986

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.65  E-value=3.4e-05  Score=70.28  Aligned_cols=33  Identities=39%  Similarity=0.540  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|+|+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g-~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLG-QKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence            699999999999999999999986 899999997

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.65  E-value=4.2e-05  Score=71.68  Aligned_cols=36  Identities=31%  Similarity=0.436  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+++|..|++   .+ .+|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G-~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGT-ADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTS-SEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCC-CcEEEEeCCCC
Confidence            46999999999999999999999   76 89999999753

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.64  E-value=2.7e-05  Score=66.57  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..+|++|||+|++|+.+|.+|++.+ .+|+|||+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARAN-LQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTT-CCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEccC
Confidence            3699999999999999999999986 899999964

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.64  E-value=3.6e-05  Score=72.01  Aligned_cols=36  Identities=36%  Similarity=0.470  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+.+|.+|.+.+ .+|+|||+++.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G-~~v~iiE~~~~   50 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELG-RSVHVIETAGD   50 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            5799999999999999999999986 89999999753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.64  E-value=3.3e-05  Score=70.48  Aligned_cols=35  Identities=31%  Similarity=0.549  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|..+|.+|++.+ .+|+|+|+.+
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g-~~V~liE~~~   39 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLG-FKTTCIEKRG   39 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT-CCEEEEECSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            4699999999999999999999986 8999999985

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.63  E-value=4.7e-05  Score=68.33  Aligned_cols=35  Identities=26%  Similarity=0.565  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|++|||+|.+|+++|.+|++.+ .+|+|+|+...
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g-~~v~v~E~~~~   37 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKG-HQVHIIDQRDH   37 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC-CcEEEEEecCC
Confidence            489999999999999999999986 89999999764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.63  E-value=4.8e-05  Score=70.32  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|.+|+++|.+|++.+..+|+|||+.+.
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~   44 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT   44 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence            4699999999999999999999987579999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.62  E-value=3.4e-05  Score=68.46  Aligned_cols=35  Identities=31%  Similarity=0.692  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      |+||||+|++|+.+|..|++. ++.+|+|||+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999997 23999999997643

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.61  E-value=2.7e-05  Score=65.98  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEE-eecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLL-LEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLl-LEaG   92 (224)
                      +.+|++|||+|+||+.+|.+|++.+ .+|+| +|+.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGG-LKNVVMFEKG   37 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHT-CSCEEEECSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC-CCeEEEEeCC
Confidence            4699999999999999999999986 89999 9983

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.61  E-value=3.8e-05  Score=70.09  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +||+||||+|++|..+|.+|++.+ .+|+|+|+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G-~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLG-LSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCC-CeEEEEeCC
Confidence            599999999999999999999986 899999997

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.61  E-value=3e-05  Score=67.20  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ...+|+||||+|++|+.+|.+|++.+ .+|+|+|+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g-~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQ-LAPLVFEGT   46 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTT-CCCEEECCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCC-CeEEEEecC
Confidence            35799999999999999999999986 899999964

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.60  E-value=3.8e-05  Score=71.43  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhc------------CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE------------NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae------------~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+++|..|++            .+ .+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G-~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK-LNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS-CEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC-CeEEEEeCCCC
Confidence            46899999999999999999999            65 89999998643

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.60  E-value=3.3e-05  Score=71.29  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcC---CCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG~   93 (224)
                      +||+||||+|++|..+|.+|++.   + .+|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G-~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPET-TQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTT-EEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCc-CEEEEEeCCC
Confidence            48999999999999999999997   5 8999999985

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.59  E-value=3.4e-05  Score=66.36  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=30.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ..+|+||||+|++|+.+|..|++.+ .+|+|||+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g-~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAE-LKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence            3699999999999999999999986 89999998

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.59  E-value=5.9e-05  Score=68.50  Aligned_cols=36  Identities=28%  Similarity=0.401  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC--eEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNW--KVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~~   94 (224)
                      ..+|++|||+|++|+.+|..|++.+ .  +|+|+|+...
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G-~~~~V~v~E~~~~   42 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEK-AFDQVTLFERRGS   42 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT-CCSEEEEECSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcC-CCCCeEEEecCCC
Confidence            4689999999999999999999986 7  9999999753

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.59  E-value=4.2e-05  Score=70.71  Aligned_cols=32  Identities=25%  Similarity=0.493  Sum_probs=30.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEee
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLE   90 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLE   90 (224)
                      .+||+||||+|++|..+|.+|++ .+ .+|+|+|
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G-~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHK-KRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHC-CCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcC-CEEEEEe
Confidence            36999999999999999999999 87 8999999

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.58  E-value=5.5e-05  Score=68.36  Aligned_cols=34  Identities=32%  Similarity=0.451  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ..+|++|||+|.+|+++|.+|.+.+ .+|+|||+.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G-~~V~VlE~~   76 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAG-HDVTILEAN   76 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTS-CEEEEECSC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC-CcEEEEecc
Confidence            4689999999999999999999987 899999998

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.56  E-value=5.5e-05  Score=69.28  Aligned_cols=34  Identities=44%  Similarity=0.636  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g-~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLG-LKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCC
Confidence            699999999999999999999986 8999999985

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.55  E-value=6.8e-05  Score=65.81  Aligned_cols=33  Identities=24%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|++|+++|..|++.+ ++|+|+|+-+.
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G-~~v~v~Er~~~   35 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHG-IKVTIYERNSA   35 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence            5899999999999999999997 99999998764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.55  E-value=4.7e-05  Score=72.52  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      .+||+||||+|.+|+.+|..|++.+ +.+|+|||+...
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3699999999999999999999974 379999999753

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.55  E-value=5.1e-05  Score=68.89  Aligned_cols=36  Identities=31%  Similarity=0.471  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      .+|+||||+|.+|+.+|.+|++.+ +.+|+|||+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            589999999999999999999974 379999999653

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=97.55  E-value=4.1e-05  Score=70.90  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=30.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEee
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLE   90 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae-~~~~~VLlLE   90 (224)
                      .+||+||||+|+||..+|.+|++ .+ .+|+|+|
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G-~~V~liE   38 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYG-KRVAVVD   38 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHC-CCEEEEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcC-CeEEEEe
Confidence            46999999999999999999999 86 8999999

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.53  E-value=4.7e-05  Score=69.60  Aligned_cols=35  Identities=26%  Similarity=0.497  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|+||..+|.+|++.+ .+|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g-~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLG-IPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHT-CCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CEEEEEccCC
Confidence            4699999999999999999999986 8999999953

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.52  E-value=5.9e-05  Score=69.01  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|.+|+.+|.+|++.+ .+|+|||+...
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g-~~v~vlE~~~~   67 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAG-HQVTVLEASER   67 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCC-CeEEEEECCCC
Confidence            4689999999999999999999987 89999999754

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.51  E-value=7e-05  Score=68.32  Aligned_cols=36  Identities=44%  Similarity=0.581  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~~   94 (224)
                      +.+|++|||+|.+|+.+|.+|++.+ . +|+|||++..
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g-~~~v~~~e~~~~   39 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAG-ITDLLILEATDH   39 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTT-CCCEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcC-CCceEEEeCCCC
Confidence            4689999999999999999999987 6 8999999864

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.48  E-value=5.5e-05  Score=68.58  Aligned_cols=37  Identities=32%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-C---CeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-N---WKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~---~~VLlLEaG~~   94 (224)
                      +.||+||||+|++|+.+|.+|++.+ .   .+|+|||+.+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCC
Confidence            4699999999999999999999974 2   79999999874

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.47  E-value=7.7e-05  Score=71.83  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE-----NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae-----~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+++|..|++     .+ ++|+|||+.+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~G-i~v~viE~~~~   47 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPD-LKVRIIDKRST   47 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTT-CCEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCC-CCEEEEeCCCC
Confidence            36999999999999999999999     76 99999998764

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.45  E-value=8.6e-05  Score=70.03  Aligned_cols=35  Identities=31%  Similarity=0.505  Sum_probs=32.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      ...||+||||+|+||..+|.+|++.+ .+|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~~g-~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAKYG-AKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHHTT-CCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHhCC-CeEEEEecc
Confidence            35799999999999999999999987 899999974

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.45  E-value=9.2e-05  Score=69.73  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|++|+.+|.+|.+.+ .+|+|||+.+
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G-~~v~iiE~~~   54 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQG-LTVRAFEAAS   54 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCC-CCEEEEeCCC
Confidence            5799999999999999999999976 8999999965

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.44  E-value=9.9e-05  Score=69.45  Aligned_cols=35  Identities=34%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|++|+.+|.+|.+.+ .+|+|||+++
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g-~~v~iiE~~~   42 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAG-MKVLGIEAGE   42 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCC-CCEEEEeCCC
Confidence            4699999999999999999999976 8999999985

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.43  E-value=0.0001  Score=67.65  Aligned_cols=33  Identities=33%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +|+||||+|.||+.+|..|++.+ .+|+|+|..+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G-~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLG-VPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCC-CcEEEEeccC
Confidence            69999999999999999999987 8999999876

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.42  E-value=0.00011  Score=69.03  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHh-cCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLS-ENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLa-e~~~~~VLlLEaG~   93 (224)
                      .++|+||||+|++|+.+|.+|. +.+ .+|+|||+.+
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G-~~v~viE~~~   42 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELG-LTTVGFDKAD   42 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCC-CCEEEEECCC
Confidence            4699999999999999999999 765 8999999965

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.42  E-value=0.0001  Score=69.49  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|.+|+.+|..|++.+ .+|+|||+.+.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g-~~v~~~e~~~~  160 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAG-AKVILLEKEPI  160 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSS-CCEEEECSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            4689999999999999999999987 89999999864

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.40  E-value=0.00014  Score=64.59  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~   93 (224)
                      ..||+||||+|+||..+|.+|++.+ +.+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            3699999999999999999999976 35799999865

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.38  E-value=0.0001  Score=66.95  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      +|+||||+|++|..+|.+|++. ++.+|+|||+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            6899999999999999999986 2489999999874

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.35  E-value=0.00016  Score=65.61  Aligned_cols=37  Identities=24%  Similarity=0.229  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~~   94 (224)
                      ..+|+||||+|++|+.+|.+|++.+. .+|+|||+.+.
T Consensus         3 ~~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~   40 (431)
T 1q1r_A            3 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATV   40 (431)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCS
T ss_pred             CCCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCC
Confidence            36899999999999999999999862 28999998864

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.34  E-value=0.00018  Score=64.52  Aligned_cols=38  Identities=26%  Similarity=0.332  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~~~   95 (224)
                      +.+|+||||+|+||+.+|.+|++.+. .+|+|||+.+..
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEI   46 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCC
Confidence            56999999999999999999999862 249999998753

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.32  E-value=0.00015  Score=67.53  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ...||++|||+|+||+.+|.+|++.+ .+|+|+|.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G-~~v~lie~  243 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKG-IRTGLMGE  243 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCC-CeEEEEEC
Confidence            35799999999999999999999986 89999986

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.32  E-value=0.00014  Score=70.11  Aligned_cols=37  Identities=32%  Similarity=0.457  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+|+||||+|+||+.+|.+|++.+ .+|+|+|++..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G-~~V~liE~~~~  425 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRG-YDVVLAEAGRD  425 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            35689999999999999999999986 89999999753

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.31  E-value=0.00027  Score=69.44  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+|+||||+|.+|+.+|..|++.+ .+|+|||++..
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~~g-~~v~v~E~~~~  370 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHNFG-IKVTVLEAKDR  370 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCC-CcEEEEecccc
Confidence            35699999999999999999999987 89999999754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.26  E-value=0.00021  Score=63.60  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .-|+||||+|+||..+|.+|++.+  +|+|+|+++.
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g--~V~lie~~~~   41 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY--EVTVIDKEPV   41 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS--EEEEECSSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC--CEEEEECCCC
Confidence            479999999999999999999876  9999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.26  E-value=0.00019  Score=65.99  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|+||+.+|.+|++.+ .+|+|+|+.+.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G-~~V~v~e~~~~  156 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKG-YEVHVYDRYDR  156 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT-CCEEEECSSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence            4689999999999999999999987 89999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=97.25  E-value=0.00022  Score=65.48  Aligned_cols=34  Identities=12%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCe---EEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE---NPNWK---VLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae---~~~~~---VLlLEaG~~   94 (224)
                      +|++|||+|++|+.+|.+|++   .+ .+   |+|+|+.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G-~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKG-AEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTT-CCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcC-CCCCcEEEEEcCCC
Confidence            699999999999999999999   76 78   999999754

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.23  E-value=0.00015  Score=66.98  Aligned_cols=36  Identities=33%  Similarity=0.467  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..+|+||||+|++|+.+|.+|++.  .+|+|||+++..
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~--~~V~vie~~~~~  142 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY--LTVALIEERGWL  142 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT--CCEEEECTTSSS
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc--CCEEEEeCCCCC
Confidence            458999999999999999999997  899999998753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.21  E-value=0.00023  Score=65.75  Aligned_cols=39  Identities=23%  Similarity=0.443  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      ...+|+||||+|+||+.+|..|.+. .+.+|+|||+.+..
T Consensus         9 ~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            9 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4579999999999999999998874 34899999998653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.20  E-value=0.00023  Score=64.54  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .|+||||+|+||..+|.+|++. ++.+|+|||+.+.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDF   36 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCc
Confidence            4899999999999999999986 2489999999875

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.18  E-value=0.00017  Score=66.48  Aligned_cols=36  Identities=17%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC--CCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP--NWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~--~~~VLlLEaG~~   94 (224)
                      ++|+||||+|+||..+|.+|++.+  +.+|+|||+.+.
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            599999999999999999999863  489999999874

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.17  E-value=0.00023  Score=64.72  Aligned_cols=36  Identities=17%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      .|+||||+|+||+.+|.+|++. ++.+|+|||+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            6999999999999999999985 34899999998753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=97.16  E-value=0.00027  Score=64.13  Aligned_cols=37  Identities=32%  Similarity=0.620  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      .+|+||||+|++|+.+|.+|++. ++.+|+|+|+.+..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            48999999999999999999986 24899999998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.13  E-value=0.00028  Score=64.81  Aligned_cols=37  Identities=30%  Similarity=0.515  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      .+|+||||+|+||..+|.+|++. .+.+|+|||+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            37999999999999999999985 34899999998753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.13  E-value=0.00041  Score=66.50  Aligned_cols=36  Identities=28%  Similarity=0.375  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||+|+||..+|..|++.+ .+|+|+|+.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g-~~V~lie~~~~  407 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARG-HQVTLFDAHSE  407 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCCC
Confidence            4589999999999999999999986 89999999754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=97.09  E-value=0.00028  Score=64.45  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      ..|+||||+|++|+.+|.+|++. ++.+|+|||+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            46999999999999999999986 24899999998763

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.09  E-value=0.00035  Score=62.38  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~   94 (224)
                      .|+||||+|++|+.+|.+|++   .+ .+|+|||+.+.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g-~~V~vie~~~~   38 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSK-ADVKVINKSRF   38 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGG-SEEEEEESSSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCC-CeEEEEeCCCC
Confidence            379999999999999999998   65 89999999874

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.08  E-value=0.00043  Score=66.45  Aligned_cols=37  Identities=30%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+|++|||+|++|+.+|.+|++.+ .+|+|+|+...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g-~~v~~~e~~~~  141 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFG-MDVTLLEARDR  141 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCC-CeEEEEecCCC
Confidence            35689999999999999999999987 89999999754

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.06  E-value=0.00042  Score=62.27  Aligned_cols=38  Identities=13%  Similarity=0.194  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~~~   95 (224)
                      ..+|+||||+|++|..+|.+|++.+. .+|+|+|+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCC
Confidence            46999999999999999999999762 369999998753

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.06  E-value=0.00047  Score=66.90  Aligned_cols=36  Identities=25%  Similarity=0.420  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|+||+.+|..|++.+ .+|+|+|+...
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G-~~Vtlie~~~~  423 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESG-YTVHLTDTAEK  423 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCCC
Confidence            4589999999999999999999987 89999999754

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.03  E-value=0.00042  Score=69.43  Aligned_cols=36  Identities=33%  Similarity=0.505  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..||+||||+|+||..+|.+|++.+ .+|+|||+.+.
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G-~~V~lie~~~~  162 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSG-ARVMLLDERAE  162 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCC-CcEEEEeCCCC
Confidence            4699999999999999999999987 89999999864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.98  E-value=0.00069  Score=60.56  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCC-CeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~~~   95 (224)
                      .|+||||+|+||+.+|.+|.+.+. .+|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCC
Confidence            489999999999999999999862 289999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.97  E-value=0.0005  Score=64.55  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      ...|+||||+|+||+.+|.+|.+. ++.+|+|+|+.+..
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            458999999999999999999986 24899999999863

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=96.93  E-value=0.00056  Score=62.82  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHhc-C------CCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSE-N------PNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae-~------~~~~VLlLEaG~~   94 (224)
                      .+|++|||+|+||+.+|.+|.+ .      + .+|+|+|+.+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g-~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLD-MAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCC-CeEEEEecCCC
Confidence            5899999999999999999998 5      4 89999999854

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.87  E-value=0.00064  Score=61.48  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~~   95 (224)
                      ..|+||||+|++|+.+|.+|++   .+ .+|+|||+.+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g-~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSG-HEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGG-SEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCc-CEEEEEeCCCCC
Confidence            3699999999999999999998   54 899999998753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.80  E-value=0.001  Score=65.99  Aligned_cols=36  Identities=31%  Similarity=0.390  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|.+|+.+|.+|++.+ .+|+|+|+...
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g-~~v~v~E~~~~  312 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFG-MDVTLLEARDR  312 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CcEEEEEecCc
Confidence            4689999999999999999999987 89999998754

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.72  E-value=0.00097  Score=62.00  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~~   95 (224)
                      .|++|||+|+||+.+|.+|.+.+ +.+|+|+|+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            37999999999999999999862 4899999999764

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.72  E-value=0.0011  Score=66.66  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNW-KVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~-~VLlLEaG~   93 (224)
                      ..+|++|||||+||..+|.+|++.+ . +|+|+|+..
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G-~~~Vtv~E~~~  221 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLG-YSDITIFEKQE  221 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTT-CCCEEEEESSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcC-CCcEEEEeCCC
Confidence            4689999999999999999999987 6 799999975

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.71  E-value=0.0011  Score=60.87  Aligned_cols=37  Identities=27%  Similarity=0.222  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      ..+|++|||+|++|..+|.+|.+.+ +.+|+|+|+.+.
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            3589999999999999999999863 489999999864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.70  E-value=0.0015  Score=58.56  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCC-CeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPN-WKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~-~~VLlLEaG~~~   95 (224)
                      .|+||||+|+||+.+|.+|.+.+. .+|+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCC
Confidence            489999999999999999999862 349999998754

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=96.58  E-value=0.0021  Score=56.95  Aligned_cols=33  Identities=33%  Similarity=0.601  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      +||||+|+||..+|.+|.+. ++.+|+|||..+.
T Consensus         5 VvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            5 VVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            89999999999999999874 3579999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.38  E-value=0.0023  Score=58.09  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=29.5

Q ss_pred             EEEECCChHHHHHHHHHhcCC-CCeEEEeecCCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGHE   95 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~~   95 (224)
                      +||||+|+||..+|.+|++.+ +.+|+|+|+++..
T Consensus         3 VvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            3 IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             EEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            799999999999999999854 4689999998753

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.15  E-value=0.005  Score=56.97  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=30.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-------------CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-------------PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-------------~~~~VLlLEaG~~   94 (224)
                      +-||+||||+|++|+.+|..|.|.             +..+++.+|+-+.
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~   87 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQ   87 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSS
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCC
Confidence            459999999999999999999763             3457888998653

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.10  E-value=0.0065  Score=54.32  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +..-++|||+|+||..+|.+|.. .+.+|+|+|+.+..
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~-~~~~itlie~~~~~   44 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALG-KCDDITMINSEKYL   44 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTT-TCSCEEEECSSSSC
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhC-CCCEEEEEECCCCC
Confidence            46789999999999999999944 45899999998764

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=96.04  E-value=0.0059  Score=55.12  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .+||||+|+||..+|.+|.+. ++.+|+|||+.+.
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            489999999999999999873 4689999998764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=96.01  E-value=0.0033  Score=61.28  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-------CeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPN-------WKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~-------~~VLlLEaG~   93 (224)
                      ...+++|||+|.+|+.+|.+|++.+.       .+|.|+|+..
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccC
Confidence            35899999999999999999998642       7999999987

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.83  E-value=0.0065  Score=56.39  Aligned_cols=36  Identities=8%  Similarity=0.241  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..-+||||+|+||..+|.+|...+ .+|+|||.-+.
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~-~~VtLId~~~~   76 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKK-YNVSIISPRSY   76 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTT-CEEEEEESSSE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCC-CcEEEECCCCC
Confidence            3467999999999999999998865 89999998753

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.39  E-value=0.04  Score=49.65  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...+++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~  183 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAG-KKVTVIDILDR  183 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CeEEEEecCcc
Confidence            4579999999999999999999987 89999999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.17  E-value=0.052  Score=41.13  Aligned_cols=34  Identities=18%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      =.++|||.|.-|..+|.+|.+.+ .+|.++|.-+.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g-~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASD-IPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTT-CCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCC-CCEEEEECCHH
Confidence            46899999999999999999987 89999998653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.14  E-value=0.054  Score=40.69  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -++|+|+|.-|..+|.+|.+.+ .+|.++|.-+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g-~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAG-KKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CeEEEEECCH
Confidence            5899999999999999999987 8999999754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.87  E-value=0.071  Score=39.35  Aligned_cols=32  Identities=28%  Similarity=0.473  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|..+|.+|.+.+ .+|.++++-+
T Consensus         6 ~i~IiG~G~iG~~~a~~L~~~g-~~v~~~d~~~   37 (140)
T 1lss_A            6 YIIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDK   37 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            5899999999999999999986 8999998753

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=93.69  E-value=0.073  Score=45.02  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFA-DKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTC-SEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHhcC-CEEEEEeccccc
Confidence            6899999999999999999987 899999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=93.56  E-value=0.078  Score=40.57  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      -++|+|+|..|..+|.+|.+.+ .+|.++|.-
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g-~~V~vid~~   35 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRG-QNVTVISNL   35 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCEEEEECC
T ss_pred             cEEEECCCHHHHHHHHHHHHCC-CCEEEEECC
Confidence            5899999999999999999986 899999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.54  E-value=0.083  Score=40.58  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .-.++|+|+|.-|..+|..|.+.+ .+|.++++-+.
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g-~~V~vid~~~~   53 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSG-HSVVVVDKNEY   53 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCC-CeEEEEECCHH
Confidence            456899999999999999999987 79999987643

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.00  E-value=0.098  Score=47.16  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  205 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFG-TKVTILEGAGEI  205 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCcc
Confidence            57999999999999999999987 899999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=93.00  E-value=0.076  Score=47.28  Aligned_cols=35  Identities=14%  Similarity=0.081  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+.+..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g-~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSG-TPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHT-CCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CeEEEEEcCCcc
Confidence            47999999999999999999987 899999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=92.97  E-value=0.098  Score=47.15  Aligned_cols=35  Identities=29%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g-~~V~lv~~~~~~  202 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLG-AEVIVLEYMDRI  202 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CEEEEEecCCcc
Confidence            36899999999999999999986 899999998753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=92.92  E-value=0.097  Score=47.50  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLG-AEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CeEEEEEcCCcc
Confidence            46999999999999999999987 899999998753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.78  E-value=0.082  Score=47.91  Aligned_cols=35  Identities=26%  Similarity=0.283  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  206 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLG-AQVSVVEARERI  206 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHT-CEEEEECSSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCC-CeEEEEEcCCcc
Confidence            36899999999999999999986 899999999754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=92.74  E-value=0.12  Score=45.52  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-+++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  180 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGG-YQLDVVAPCEQV  180 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CeEEEEecCcch
Confidence            457899999999999999999987 899999998753

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=92.56  E-value=0.1  Score=46.01  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAG-YHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTT-CEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCCee
Confidence            47899999999999999999987 899999999753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=92.55  E-value=0.14  Score=43.00  Aligned_cols=35  Identities=31%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G-~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYG-SKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTS-SEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHHhC-Ceeeeecccccc
Confidence            46899999999999999999987 899999988653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.54  E-value=0.15  Score=36.40  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -.++|+|+|..|..+|.+|.+.+..+|.++++.+
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            3589999999999999999998757899998754

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=92.15  E-value=0.14  Score=46.27  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  218 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLG-SKVTVVEFQPQI  218 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcC-CEEEEEEeCCcc
Confidence            36899999999999999999987 899999999753

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=91.96  E-value=0.16  Score=45.89  Aligned_cols=34  Identities=24%  Similarity=0.162  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~  201 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLG-AKTHLFEMFDA  201 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC-CEEEEEEeCCc
Confidence            36899999999999999999987 89999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=91.91  E-value=0.15  Score=37.65  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|+|+|..|..+|.+|.+.+ .+|.++++.+
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g-~~v~~~d~~~   39 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMG-HEVLAVDINE   39 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCCEEEESCH
T ss_pred             cEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence            4899999999999999999987 7899998753

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=91.73  E-value=0.16  Score=43.59  Aligned_cols=33  Identities=24%  Similarity=0.432  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~~g-~~V~lv~~~~~  200 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAKNG-SDIALYTSTTG  200 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECC---
T ss_pred             EEEEECCCcCHHHHHHHHHhcC-CeEEEEecCCC
Confidence            6999999999999999999987 79999999875

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=91.57  E-value=0.2  Score=44.64  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  180 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAG-VHVSLVETQPRL  180 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CEEEEEEeCCcc
Confidence            357999999999999999999987 899999998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=91.35  E-value=0.13  Score=46.95  Aligned_cols=35  Identities=31%  Similarity=0.461  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .-+++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       186 ~~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~  220 (480)
T 3cgb_A          186 VEDVTIIGGGAIGLEMAETFVELG-KKVRMIERNDH  220 (480)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHTT-CEEEEECCGGG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcC-CeEEEEEeCCc
Confidence            467999999999999999999987 89999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.29  E-value=0.17  Score=39.68  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~   93 (224)
                      -.++|||.|..|..+|.+|.+. + .+|.++|.-+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g-~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYG-KISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHC-SCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccC-CeEEEEECCH
Confidence            3599999999999999999987 7 7999998764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=91.26  E-value=0.21  Score=45.53  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKG-KEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CeEEEEEcccch
Confidence            46899999999999999999987 899999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.10  E-value=0.18  Score=40.85  Aligned_cols=31  Identities=16%  Similarity=0.443  Sum_probs=28.3

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++|||+|.-|..+|.+|.+.+ .+|.++|.-+
T Consensus         3 iiIiG~G~~G~~la~~L~~~g-~~v~vid~~~   33 (218)
T 3l4b_C            3 VIIIGGETTAYYLARSMLSRK-YGVVIINKDR   33 (218)
T ss_dssp             EEEECCHHHHHHHHHHHHHTT-CCEEEEESCH
T ss_pred             EEEECCCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            799999999999999999986 8999999754

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=90.93  E-value=0.27  Score=41.19  Aligned_cols=35  Identities=26%  Similarity=0.210  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANIC-KKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTS-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CEEEEEeeCCcc
Confidence            46899999999999999999986 899999998753

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=90.76  E-value=0.25  Score=44.84  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|+++.
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~~G-~~Vtlv~~~~~  200 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRSFG-SEVTVVALEDR  200 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcC-CEEEEEEcCCc
Confidence            6899999999999999999987 89999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=90.70  E-value=0.27  Score=41.17  Aligned_cols=35  Identities=31%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+.+..
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIV-EHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTB-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC-CEEEEEEeCccc
Confidence            36899999999999999999986 899999998754

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=90.68  E-value=0.25  Score=44.66  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       180 ~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  213 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQRLG-ADVTAVEFLGHV  213 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CEEEEEeccCcc
Confidence            6899999999999999999987 899999998753

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=90.67  E-value=0.25  Score=44.33  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCe-EEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWK-VLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+ |.|+++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~-~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVA-KHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTS-CSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHHh-CCcEEEEeCCCC
Confidence            46999999999999999999987 56 999998863

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=90.54  E-value=0.27  Score=44.39  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  206 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYG-VDVTIVEFLPRA  206 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcC-CeEEEEEcCCcc
Confidence            36899999999999999999987 899999999753

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=90.31  E-value=0.29  Score=43.92  Aligned_cols=34  Identities=21%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAAQG-KNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CeEEEEEcCCcc
Confidence            7999999999999999999987 899999999753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=90.29  E-value=0.29  Score=44.79  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       177 ~~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~  210 (500)
T 1onf_A          177 KKIGIVGSGYIAVELINVIKRLG-IDSYIFARGNR  210 (500)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTT-CEEEEECSSSS
T ss_pred             CeEEEECChHHHHHHHHHHHHcC-CeEEEEecCCc
Confidence            36899999999999999999987 89999999875

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=90.05  E-value=0.34  Score=40.95  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+.+..
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-SEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhcC-CeEEEEecCCcC
Confidence            46899999999999999999986 899999998753

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=90.00  E-value=0.31  Score=44.27  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~  219 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLG-SETHLVIRGET  219 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CceEEEEeCCc
Confidence            36899999999999999999987 89999999975

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=89.95  E-value=0.35  Score=43.45  Aligned_cols=35  Identities=20%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  184 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQN-YNVNLIDGHERV  184 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHhcC-CEEEEEEcCCch
Confidence            46899999999999999999986 899999998753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=89.95  E-value=0.31  Score=41.21  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~~g-~~V~~v~~~~~~  187 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLDTA-RRITLIHRRPQF  187 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTTTS-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhC-CEEEEEEcCCcc
Confidence            36899999999999999999986 799999998753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=89.88  E-value=0.33  Score=43.57  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G-~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKAN-MHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CEEEEEEeCCcc
Confidence            46899999999999999999987 899999998753

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=89.87  E-value=0.37  Score=41.10  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g-~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFA-RSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTC-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhC-CeEEEEEcCCcC
Confidence            46899999999999999999986 899999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=89.87  E-value=0.32  Score=41.91  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++++ .+|.++.+.+
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g-~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAKTG-HCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHHTT-CEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCh
Confidence            4789999999999999999987 7999998875

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=89.82  E-value=0.32  Score=44.51  Aligned_cols=35  Identities=23%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~~  209 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLG-VIVKVFGRSGSV  209 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTT-CEEEEECCTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEECCcc
Confidence            36899999999999999999987 899999999853

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=89.76  E-value=0.32  Score=45.37  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~-~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETA-KELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTB-SEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhC-CEEEEEEcCCC
Confidence            35899999999999999999986 79999999985

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=89.68  E-value=0.26  Score=44.77  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G-~~Vtlv~~~~~~  220 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLG-SRLDVVEMMDGL  220 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHT-CEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEECCcc
Confidence            36899999999999999999987 899999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=89.58  E-value=0.36  Score=42.88  Aligned_cols=36  Identities=33%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|..|+-+|..|.+.+ .+|.++|+.+..
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g-~~Vtvv~~~~~~  178 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLG-LSVTILEAGDEL  178 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCcc
Confidence            357999999999999999999987 899999999764

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=89.52  E-value=0.38  Score=44.86  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~-~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEV-EHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTC-SEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhC-CEEEEEECCCC
Confidence            36999999999999999999986 89999999986

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=89.48  E-value=0.31  Score=44.29  Aligned_cols=34  Identities=12%  Similarity=0.065  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++.+.
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g-~~V~li~~~~~  231 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYG-AKKLISCYRTA  231 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTT-CSEEEEECSSC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhC-CeEEEEEECCC
Confidence            35899999999999999999987 79999998754

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=89.41  E-value=0.42  Score=40.07  Aligned_cols=35  Identities=26%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++.+..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  180 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSNIA-SEVHLIHRRDGF  180 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTS-SEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcC-CeEEEEEeCCcc
Confidence            46899999999999999999986 899999998753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.32  E-value=0.23  Score=44.82  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtli~~~~~~  212 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIG-SEVTVVEFASEI  212 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHT-CEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCcc
Confidence            36899999999999999999986 899999999753

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=89.28  E-value=0.32  Score=41.75  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++++ .+|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~~g-~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQRSG-EDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTS-CCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CeEEEEEcCc
Confidence            4789999999999999999987 7999998865

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=89.21  E-value=0.39  Score=43.28  Aligned_cols=35  Identities=17%  Similarity=0.104  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  211 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARLG-SKVTVLARNTLF  211 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CEEEEEEECCcc
Confidence            35899999999999999999987 899999998753

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=89.21  E-value=0.44  Score=40.24  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g-~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFA-DEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTC-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CEEEEEeCCCcC
Confidence            36899999999999999999986 899999998653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=89.12  E-value=0.45  Score=39.96  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g-~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYG-SKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTS-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CEEEEEEcCCcc
Confidence            46899999999999999999986 899999998754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=89.10  E-value=0.33  Score=43.73  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|++...
T Consensus       149 ~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYERG-LHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHhcC-Ccceeeeeeccc
Confidence            6999999999999999999987 899999999753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=89.07  E-value=0.41  Score=43.21  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  209 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLG-AEVTVVEFAPRC  209 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhC-CEEEEEecCCcc
Confidence            36899999999999999999987 899999999753

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=89.03  E-value=0.46  Score=39.50  Aligned_cols=32  Identities=19%  Similarity=0.172  Sum_probs=28.4

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.|||+|.-|..+|.+|++.+ .+|.++++.+.
T Consensus         3 i~iiG~G~~G~~~a~~l~~~g-~~V~~~~r~~~   34 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCKQG-HEVQGWLRVPQ   34 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHhCC-CCEEEEEcCcc
Confidence            689999999999999999987 69999987653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=88.44  E-value=0.46  Score=40.81  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~  198 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNA-ASVTLVHRGHEF  198 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTS-SEEEEECSSSSC
T ss_pred             cEEEECCCHHHHHHHHHHHhcC-CEEEEEEcCCCC
Confidence            6899999999999999999986 899999998753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=88.36  E-value=0.34  Score=44.41  Aligned_cols=32  Identities=22%  Similarity=0.534  Sum_probs=29.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+|+|--|..+|..|++.+ ..|.|||.-+.
T Consensus         6 iiI~G~G~vG~~la~~L~~~~-~~v~vId~d~~   37 (461)
T 4g65_A            6 IIILGAGQVGGTLAENLVGEN-NDITIVDKDGD   37 (461)
T ss_dssp             EEEECCSHHHHHHHHHTCSTT-EEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHHCC-CCEEEEECCHH
Confidence            899999999999999999886 89999998753

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=88.31  E-value=0.49  Score=42.76  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  207 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMG-VQTHIIEMLDRA  207 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CEEEEEEeCCcC
Confidence            35899999999999999999987 899999998753

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=88.16  E-value=0.52  Score=39.66  Aligned_cols=35  Identities=26%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g-~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYV-KNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTB-SEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhC-CcEEEEEcCCcc
Confidence            36899999999999999999986 899999988653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=88.16  E-value=0.25  Score=45.58  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-------------CCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-------------PNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-------------~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|+.|+-+|..|++.             .+.+|.|+|+++..
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            3599999999999999998762             12689999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=88.14  E-value=0.52  Score=43.41  Aligned_cols=34  Identities=32%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLG-IKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhcC-CcEEEEEcCCcc
Confidence            7999999999999999999987 899999999753

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=88.02  E-value=0.46  Score=41.68  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+-|||+|.-|+-+|..++.+| ++|.|+|.-+
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G-~~V~l~D~~~   39 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGG-FRVKLYDIEP   39 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CCEEEECSCH
T ss_pred             eEEEECCcHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            4789999999999999999997 9999998754

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=87.99  E-value=0.41  Score=43.52  Aligned_cols=34  Identities=29%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       200 ~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWARLG-AKVTVVEFLDTI  233 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT-CEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CEEEEEeccccc
Confidence            5799999999999999999987 799999999754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=87.98  E-value=0.57  Score=41.47  Aligned_cols=36  Identities=33%  Similarity=0.329  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|..|+-+|..|.+.+ .+|.++|+++..
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~  187 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFG-VNVTLLEALPRV  187 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcC-CeEEEEecCCch
Confidence            346899999999999999999987 899999999754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=87.97  E-value=0.53  Score=42.57  Aligned_cols=34  Identities=24%  Similarity=0.140  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~  221 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALG-SKTSLMIRHDK  221 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHcC-CeEEEEEeCCc
Confidence            36899999999999999999987 89999999875

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=87.95  E-value=0.38  Score=44.91  Aligned_cols=34  Identities=18%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|.-+|..|++.+ .+|.|+++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~-~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQA-EQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHB-SEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhC-CEEEEEECCCC
Confidence            35899999999999999999986 79999999985

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=87.76  E-value=0.48  Score=41.10  Aligned_cols=31  Identities=26%  Similarity=0.444  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      -+.|||+|.-|+.+|.+|++++ .+|.++.+.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~~g-~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLALAG-EAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHHTT-CCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CEEEEEECh
Confidence            4789999999999999999987 799999875

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=87.68  E-value=0.58  Score=41.31  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|.+.+ .+|.++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKG-LEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CEEEEEeCCCcc
Confidence            46899999999999999999987 899999998754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=87.56  E-value=0.39  Score=42.97  Aligned_cols=37  Identities=14%  Similarity=0.288  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|..|+-+|..|++. +..+|.++++.+..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999987 34899999999753

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=87.49  E-value=0.37  Score=40.98  Aligned_cols=32  Identities=19%  Similarity=0.352  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|++++ .+|.++.+..
T Consensus         4 kI~iiGaGa~G~~~a~~L~~~g-~~V~~~~r~~   35 (294)
T 3g17_A            4 SVAIIGPGAVGTTIAYELQQSL-PHTTLIGRHA   35 (294)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHC-TTCEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CeEEEEEecc
Confidence            4789999999999999999987 6899988874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=87.38  E-value=0.58  Score=39.32  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      -+.|||+|..|..+|.+|++.+ .+|.++++-
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g-~~V~~~~r~   35 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGG-NDVTLIDQW   35 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCC-CcEEEEECC
Confidence            4789999999999999999987 799999874

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=87.37  E-value=0.71  Score=37.32  Aligned_cols=33  Identities=12%  Similarity=0.308  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -.+.|||+|..|..+|.+|++.+ .+|.++++.+
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g-~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAG-HEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCC-CEEEEEcCCH
Confidence            45899999999999999999987 7999998765

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=87.35  E-value=0.58  Score=39.84  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|.-|..+|..|++.+ .+|.++++.+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G-~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATG-HTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            3889999999999999999987 7999998754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=87.31  E-value=0.54  Score=42.51  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.+||||.|..|..+|..|.+.+ ..|++||.-+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g-~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSG-VKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT-CCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHH
Confidence            35999999999999999999987 89999998653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=87.15  E-value=0.56  Score=43.79  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLG-GDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence            5899999999999999999987 799999997

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=87.14  E-value=0.66  Score=41.82  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       181 ~~v~ViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  215 (476)
T 3lad_A          181 GKLGVIGAGVIGLELGSVWARLG-AEVTVLEAMDKF  215 (476)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CcEEEEecCCCc
Confidence            35899999999999999999987 899999999753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.94  E-value=0.63  Score=39.35  Aligned_cols=32  Identities=19%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|.-|..+|..|++.+ .+|.+.++-+
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G-~~V~l~d~~~   37 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHG-FAVTAYDINT   37 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence            3789999999999999999987 8999998764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=86.80  E-value=0.55  Score=42.94  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcC---CCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.   + .+|.|+|+++..
T Consensus       193 ~vvViGgG~ig~E~A~~l~~~~~~g-~~Vtlv~~~~~~  229 (495)
T 2wpf_A          193 RVLTVGGGFISVEFAGIFNAYKPPG-GKVTLCYRNNLI  229 (495)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTT-CEEEEEESSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCC-CeEEEEEcCCcc
Confidence            689999999999999999987   6 899999998753

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=86.79  E-value=0.72  Score=41.41  Aligned_cols=35  Identities=20%  Similarity=0.187  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~~~  182 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMK-KTVHVFESLENL  182 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CeEEEEEccCcc
Confidence            46899999999999999999987 899999998753

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=86.63  E-value=0.66  Score=39.60  Aligned_cols=32  Identities=19%  Similarity=0.399  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCC--eEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNW--KVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~   93 (224)
                      -+.|||+|..|..+|..|++.+ .  +|.++++..
T Consensus         9 kI~IiGaG~vG~~~a~~l~~~g-~~~~V~l~d~~~   42 (319)
T 1lld_A            9 KLAVIGAGAVGSTLAFAAAQRG-IAREIVLEDIAK   42 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CCCEEEEEeCCh
Confidence            5899999999999999999986 5  899998864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=86.62  E-value=0.72  Score=39.60  Aligned_cols=31  Identities=29%  Similarity=0.353  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|+.+|.+|+ ++ .+|.++.+.+
T Consensus         4 kI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r~~   34 (307)
T 3ego_A            4 KIGIIGGGSVGLLCAYYLS-LY-HDVTVVTRRQ   34 (307)
T ss_dssp             EEEEECCSHHHHHHHHHHH-TT-SEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHh-cC-CceEEEECCH
Confidence            4789999999999999999 76 7999998875

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=86.55  E-value=0.65  Score=40.02  Aligned_cols=31  Identities=23%  Similarity=0.425  Sum_probs=27.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      -.+.|||+|.-|+.+|.+|++++ .+|.++ +-
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G-~~V~l~-~~   50 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAG-HEVILI-AR   50 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTT-CEEEEE-CC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCC-CeEEEE-Ec
Confidence            35799999999999999999987 789988 53

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=86.39  E-value=0.6  Score=42.59  Aligned_cols=34  Identities=24%  Similarity=0.164  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcC---CCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.   + .+|.++|+++.
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g-~~Vtlv~~~~~  224 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARG-GQVDLAYRGDM  224 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTT-CEEEEEESSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCc-CeEEEEEcCCC
Confidence            3689999999999999999987   6 89999999975

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=85.88  E-value=0.67  Score=38.49  Aligned_cols=36  Identities=28%  Similarity=0.248  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|..|+-+|..|.+.+ .+|.++++++..
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g-~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYS-TKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHS-SEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhC-CeEEEEEeCCCC
Confidence            357999999999999999999986 899999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=85.86  E-value=0.78  Score=37.69  Aligned_cols=33  Identities=12%  Similarity=-0.023  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+  +|.+++++..
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g--~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG--ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS--EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC--cEEEEECCCC
Confidence            46899999999999999999985  9999998875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=85.76  E-value=0.81  Score=42.08  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G-~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATG-RRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEecCcc
Confidence            46899999999999999999987 899999998753

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=85.71  E-value=0.8  Score=42.57  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g-~~Vtlv~~~~~~  222 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERG-IEVTLVEMANQV  222 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-CeEEEEecCCcc
Confidence            46899999999999999999987 899999998753

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=85.26  E-value=0.95  Score=37.81  Aligned_cols=35  Identities=17%  Similarity=0.149  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++..
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~-~~v~~~~~~~~~  189 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIA-KEVSIIHRRDKF  189 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTB-SEEEEECSSSSC
T ss_pred             CEEEEECCCHhHHHHHHHHHhhC-CeEEEEEecCcC
Confidence            46899999999999999999986 799999998753

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=85.24  E-value=0.84  Score=41.57  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       183 ~~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~~~  217 (499)
T 1xdi_A          183 DHLIVVGSGVTGAEFVDAYTELG-VPVTVVASQDHV  217 (499)
T ss_dssp             SSEEEESCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCcc
Confidence            36899999999999999999986 899999999753

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=85.24  E-value=0.87  Score=41.32  Aligned_cols=32  Identities=16%  Similarity=0.060  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|++.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~~g-~~Vtlv~~~~  218 (488)
T 3dgz_A          187 KTLVVGASYVALECAGFLTGIG-LDTTVMMRSI  218 (488)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             eEEEECCCHHHHHHHHHHHHcC-CceEEEEcCc
Confidence            5899999999999999999986 8999999875

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=85.03  E-value=1.1  Score=35.71  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=27.5

Q ss_pred             EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.||| +|..|..+|.+|++.+ .+|.++++-+
T Consensus         3 i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~~   34 (212)
T 1jay_A            3 VALLGGTGNLGKGLALRLATLG-HEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTT-CEEEEEESSH
T ss_pred             EEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence            67999 9999999999999987 7999988753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=84.96  E-value=0.89  Score=39.10  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+.|||+|..|..+|.+|++.+ .+|.++++-
T Consensus         6 ki~iiG~G~~G~~~a~~L~~~g-~~V~~~~r~   36 (359)
T 1bg6_A            6 TYAVLGLGNGGHAFAAYLALKG-QSVLAWDID   36 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CEEEEEeCC
Confidence            5899999999999999999987 789999775

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=84.95  E-value=0.66  Score=42.77  Aligned_cols=35  Identities=31%  Similarity=0.304  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g-~~Vtlv~~~~~l  390 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIV-EHVTLLEFAPEM  390 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHB-SEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhC-CEEEEEEeCccc
Confidence            36899999999999999999976 799999998753

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=84.93  E-value=1.1  Score=37.17  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|.+.+ .+|.++++++..
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g-~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANIC-SKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTS-SEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhC-CEEEEEEeCCCC
Confidence            46899999999999999999986 899999998754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=84.79  E-value=0.97  Score=38.00  Aligned_cols=32  Identities=16%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -.++|||+|..|+-+|..|++.+  +|.+++++.
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~--~v~~v~~~~  195 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA--ETTWITQHE  195 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS--EEEEECSSC
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC--CEEEEECCC
Confidence            46899999999999999999986  699999885

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=84.56  E-value=0.98  Score=40.95  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g-~~Vtli~~~~~  225 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLG-VKTTLLHRGDL  225 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcC-CeEEEEECCCc
Confidence            46899999999999999999987 79999999875

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=84.36  E-value=0.81  Score=41.26  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|..|++. + .+|.++|+++..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g-~~Vtlv~~~~~~  195 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWG-IDTTVVELADQI  195 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHC-CEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcC-CcEEEEEccCcc
Confidence            4799999999999999999997 6 799999998753

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=84.34  E-value=1.1  Score=40.69  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHhc--------------------CCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE--------------------NPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae--------------------~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++                    .+-.+|.|+++.+.
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            468999999999999999993                    44237999999874

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=84.31  E-value=0.61  Score=37.97  Aligned_cols=33  Identities=12%  Similarity=0.094  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.+||+|.|..|..+|..|.+.+ . |.++|+-+.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g-~-v~vid~~~~   42 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSE-V-FVLAEDENV   42 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSE-E-EEEESCGGG
T ss_pred             CEEEEECCChHHHHHHHHHHhCC-e-EEEEECCHH
Confidence            45899999999999999999986 6 999987643

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=84.03  E-value=1  Score=41.49  Aligned_cols=32  Identities=19%  Similarity=0.092  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+..
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G-~~Vtlv~~~~  243 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIG-LDVTVMVRSI  243 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCEEEEESSC
T ss_pred             eEEEECCcHHHHHHHHHHHHcC-CeEEEEeccc
Confidence            5899999999999999999986 8999999863

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=83.99  E-value=0.9  Score=37.98  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .-.++|||+|..|+.+|..|+..|-.+|.|++...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46799999999999999999998744899998876

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=83.71  E-value=0.83  Score=38.94  Aligned_cols=29  Identities=21%  Similarity=0.384  Sum_probs=26.8

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +.|||+|..|..+|..|++.+ .+|.++++
T Consensus         3 I~iiG~G~mG~~~a~~L~~~g-~~V~~~~r   31 (335)
T 1txg_A            3 VSILGAGAMGSALSVPLVDNG-NEVRIWGT   31 (335)
T ss_dssp             EEEESCCHHHHHHHHHHHHHC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHhCC-CeEEEEEc
Confidence            679999999999999999987 79999987

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=83.40  E-value=1.1  Score=38.56  Aligned_cols=34  Identities=44%  Similarity=0.582  Sum_probs=29.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .+.-+.|||+|.-|+.+|.+|++++ .+|.+..+.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G-~~V~~~~r~   46 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENG-EEVILWARR   46 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCC-CeEEEEeCC
Confidence            3567999999999999999999987 799998775

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=83.05  E-value=1.3  Score=39.86  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~g-~~Vt~v~~~~~  204 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGLG-VKTTLIYRGKE  204 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcC-CeEEEEEcCCc
Confidence            46899999999999999999987 79999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=82.87  E-value=1.4  Score=40.09  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|.-+|..|.+.+..+|.++++....
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            369999999999999999998874579999998753

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=82.83  E-value=1.3  Score=39.96  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .++|||+|..|+-+|..|++.+ .+|.++|+..
T Consensus       189 ~vvViGgG~~g~E~A~~l~~~g-~~Vtlv~~~~  220 (483)
T 3dgh_A          189 KTLVVGAGYIGLECAGFLKGLG-YEPTVMVRSI  220 (483)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCC
Confidence            5899999999999999999987 8999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=82.66  E-value=1.6  Score=36.12  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -++|.|+|.-|..++.+|.+.+ .+|.++.+...
T Consensus         5 ~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~r~~~   37 (286)
T 3gpi_A            5 KILIAGCGDLGLELARRLTAQG-HEVTGLRRSAQ   37 (286)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCEEEEECTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCcc
Confidence            3899999999999999999987 79999987653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=82.43  E-value=0.79  Score=34.43  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      --+.|||+|..|..+|..|.+.+ .+|.+.++-+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g-~~v~v~~r~~   54 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQ-YKVTVAGRNI   54 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTT-CEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCH
Confidence            45899999999999999999876 6798888754

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=82.42  E-value=1.2  Score=40.94  Aligned_cols=34  Identities=24%  Similarity=0.429  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .--+.|||.|.-|+.+|..|++++ .+|.++++-+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G-~~V~~~d~~~   41 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIG-HDVFCLDVDQ   41 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             CceEEEECcCHHHHHHHHHHHhCC-CEEEEEECCH
Confidence            456889999999999999999987 7999998753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=82.09  E-value=1.5  Score=35.47  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      --+.|||+|..|..+|.+|.+.+ .+|.++++.+
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g-~~V~~~~r~~   61 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSG-FKVVVGSRNP   61 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCEEEEESSH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCC-CEEEEEeCCH
Confidence            35899999999999999999987 7899988754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=82.06  E-value=1.3  Score=40.39  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|.-|+.+|..|+..+ .+|.++++-+
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G-~~V~l~D~~~   70 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVG-ISVVAVESDP   70 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT-CEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            4889999999999999999987 8999998754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=81.96  E-value=1  Score=38.65  Aligned_cols=33  Identities=21%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .--++|||+|..|...|..|.+.+ .+|.|++.-
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~G-a~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTG-CKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGT-CEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCC-CEEEEEcCC
Confidence            345899999999999999999987 899999753

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=81.88  E-value=1.4  Score=38.97  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -.+.|||+|.-|..+|..|++++ .+|.+..+.+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G-~~V~l~~r~~   62 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKG-QKVRLWSYES   62 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTT-CCEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHHCC-CeEEEEeCCH
Confidence            46899999999999999999987 7899988753

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=81.45  E-value=1.5  Score=37.66  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCC--eEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNW--KVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~--~VLlLEaG~   93 (224)
                      +.|||+|..|..+|..|+..+ .  .|.|++.-.
T Consensus         3 I~VIGaG~vG~~la~~la~~g-~~~eV~L~D~~~   35 (304)
T 2v6b_A            3 VGVVGTGFVGSTAAFALVLRG-SCSELVLVDRDE   35 (304)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CCSEEEEECSSH
T ss_pred             EEEECCCHHHHHHHHHHHhCC-CCCEEEEEeCCH
Confidence            689999999999999999986 5  799998753

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=81.32  E-value=1.2  Score=38.81  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      --+.|||+|.-|..+|..|++++..+|.|++.-+
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            4589999999999999999998743899998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=81.30  E-value=1.5  Score=36.49  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      +.--++|||+|..|...|..|.+.+ .+|.|+..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~G-A~VtVvap   62 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEG-AAITVVAP   62 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGC-CCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEECC
Confidence            3467899999999999999999987 79999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=81.28  E-value=1.2  Score=41.62  Aligned_cols=33  Identities=15%  Similarity=0.050  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -..+|||+|..|+-+|.-|+.-+ .+|.|+++..
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~lG-~~VTii~~~~  256 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSLG-YDVTVAVRSI  256 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHT-CCEEEEESSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcC-CeEEEecccc
Confidence            35899999999999999999987 8999999864

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=81.21  E-value=1.7  Score=38.53  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ...-++|||+|..|+.+|..|+..|-.++.|++...-
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~V   69 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTV   69 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEe
Confidence            3578999999999999999999988667889988763

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=81.06  E-value=1.4  Score=37.92  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -+.|||+|..|..+|..|++.+..+|.|++.-+
T Consensus         6 kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            6 KIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            488999999999999999998733899998865

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=80.92  E-value=1.2  Score=38.77  Aligned_cols=32  Identities=25%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+.|||+|.-|..+|.+|++++ .+|.++++.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G-~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKC-REVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTE-EEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CEEEEEECCH
Confidence            5899999999999999999987 7899987653

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=80.88  E-value=1.8  Score=39.18  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcC--------------------CCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN--------------------PNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~--------------------~~~~VLlLEaG~~   94 (224)
                      -.++|||+|..|+-+|..|++.                    +..+|.|+++.+.
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~  202 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP  202 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence            3689999999999999999974                    4358999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=80.79  E-value=1.7  Score=35.77  Aligned_cols=32  Identities=16%  Similarity=0.422  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -++|.|+|.-|..++.+|.+++ .+|.++-+.+
T Consensus         7 ~ilVtGaG~iG~~l~~~L~~~g-~~V~~~~r~~   38 (286)
T 3ius_A            7 TLLSFGHGYTARVLSRALAPQG-WRIIGTSRNP   38 (286)
T ss_dssp             EEEEETCCHHHHHHHHHHGGGT-CEEEEEESCG
T ss_pred             cEEEECCcHHHHHHHHHHHHCC-CEEEEEEcCh
Confidence            3899999999999999999986 8999998765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=80.66  E-value=1.4  Score=38.86  Aligned_cols=29  Identities=21%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEee
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLE   90 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLE   90 (224)
                      .+.|||+|..|+.+|..|++. + .+|.+++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G-~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDG-VEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTT-EEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEEe
Confidence            378999999999999999984 6 7999987

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=80.50  E-value=1.9  Score=35.55  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .--+-|||.|.-|..+|.+|++++ .+|.+.++-+.
T Consensus        19 ~~kIgiIG~G~mG~alA~~L~~~G-~~V~~~~r~~~   53 (245)
T 3dtt_A           19 GMKIAVLGTGTVGRTMAGALADLG-HEVTIGTRDPK   53 (245)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC-CEEEEEeCChh
Confidence            356889999999999999999987 79999987654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=80.46  E-value=2.2  Score=33.48  Aligned_cols=31  Identities=16%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             EEEEC-CChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVG-GGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++|+| +|..|..++.+|.+.+ .+|.++-+.+
T Consensus         3 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~   34 (221)
T 3ew7_A            3 IGIIGATGRAGSRILEEAKNRG-HEVTAIVRNA   34 (221)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-CEEEEEESCS
T ss_pred             EEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCc
Confidence            68999 5999999999999987 8999998875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=80.21  E-value=1.8  Score=37.66  Aligned_cols=34  Identities=18%  Similarity=0.288  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      --+.|||+|..|..+|..|++.+..+|.|++.-.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            3589999999999999999998743899998864

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=80.19  E-value=1.8  Score=40.06  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.+||||.|.-|..+|..|.+.+ ..|++||.-+..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g-~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKP-VPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCC-CCEEEEECChHH
Confidence            46999999999999999999986 899999987653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=80.16  E-value=2  Score=33.84  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=27.6

Q ss_pred             EEEECC-ChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGG-GSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGs-G~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++|.|+ |.-|..++.+|.+.+ .+|.++-+.+
T Consensus         3 ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~   34 (224)
T 3h2s_A            3 IAVLGATGRAGSAIVAEARRRG-HEVLAVVRDP   34 (224)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-CEEEEEESCH
T ss_pred             EEEEcCCCHHHHHHHHHHHHCC-CEEEEEEecc
Confidence            789997 999999999999987 8999998764

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=80.16  E-value=1.4  Score=39.62  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|||.|.-|+.+|..|++.+ .+|.++++-+
T Consensus         3 I~VIG~G~vG~~~A~~la~~G-~~V~~~d~~~   33 (436)
T 1mv8_A            3 ISIFGLGYVGAVCAGCLSARG-HEVIGVDVSS   33 (436)
T ss_dssp             EEEECCSTTHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             EEEECCCHHHHHHHHHHHHCC-CEEEEEECCH
Confidence            679999999999999999987 7999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	3e-40
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	3e-33
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-30
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	3e-30
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	6e-26
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	4e-19
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	4e-19
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	6e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	1e-05
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	3e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	3e-05
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	7e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	7e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	9e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	1e-04
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	1e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-04
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	5e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	6e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	8e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	9e-04
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	0.001
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.001
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.001
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	0.001
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.002
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.002
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	0.003
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.004
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	0.004

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  139 bits (351), Expect = 3e-40
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 18/184 (9%)

Query: 44  YDPETQIFDQKKLLM--------EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE 95
           Y P  QI  Q  LL          YD+I+ GGG  G  VA +L+ENP  KVL++E G +E
Sbjct: 1   YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60

Query: 96  TE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTML 152
           +    I + P     +  +  D  Y T P       + ++      GK +GGS+++N   
Sbjct: 61  SNDGAIIEDPNAYGQIFGTTVDQNYLTVPL------INNRTNNIKAGKGLGGSTLINGDS 114

Query: 153 YVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSP 211
           + R ++   D W    G EGW+++ +  Y KK+   R P  A++   H+        +  
Sbjct: 115 WTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGT 174

Query: 212 WNTP 215
             + 
Sbjct: 175 VQSG 178

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  121 bits (303), Expect = 3e-33
 Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVPVLSLYLHKSRFDW 115
             D+I+ GGG  G   A RL+ENPN  VL++E+G +E++   I +       +  S  D 
Sbjct: 17  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 76

Query: 116 KYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGN-EGWSY 174
            Y T        A  ++  +   G  +GGS+++N   + R ++   D W      EGW++
Sbjct: 77  AYETVE-----LATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNW 131

Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWN 213
           + V  Y  ++   R P   +I   H         +   +
Sbjct: 132 DNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH 170

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  113 bits (283), Expect = 2e-30
 Identities = 18/158 (11%), Positives = 35/158 (22%), Gaps = 13/158 (8%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKY 117
           ++YD ++VG G  G   A  L     +KV + + G  ++ +         +   +   K+
Sbjct: 3   IKYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 61

Query: 118 RTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGN--------RRDFDQWAADGN 169
                            +                +    N                  G 
Sbjct: 62  VNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 121

Query: 170 EGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTV 207
               +    P F +            D   A       
Sbjct: 122 MSTHWTCATPRFDREQRPLLVK----DDADADDAEWDR 155

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  112 bits (281), Expect = 3e-30
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 18/151 (11%)

Query: 37  LYFRYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET 96
           L F YD  D E        L   YD+++VGGG++G  +A  LSE   +KVL+LE G   T
Sbjct: 12  LSFAYDATDLE--------LEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPT 61

Query: 97  EITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRG 156
              +V     +++  + +   +T       + + +      RG+V+GG+S++N  +Y R 
Sbjct: 62  AYPNVLTADGFVYNLQQEDDGKTPV----ERFVSEDGIDNVRGRVLGGTSIINAGVYARA 117

Query: 157 NRRDFDQWAADGNEGWSYEEVLPYFKKSMDQ 187
           N   +     D    W  + V   ++   D 
Sbjct: 118 NTSIYSASGVD----WDMDLVNQTYEWVEDT 144

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score =  101 bits (251), Expect = 6e-26
 Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 24/185 (12%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVP---------------- 102
               +V+G G  G V A RL++       ++E G                          
Sbjct: 7   RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 65

Query: 103 ---VLSLYLHKSRFDWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRR 159
                    +   F              + +       +G+ +GG S++N  + V   R 
Sbjct: 66  ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 125

Query: 160 DFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFR 219
            F++     +    Y +  P     +   N        +  +  +     +   T     
Sbjct: 126 YFEEILPSVDSNEMYNKYFPRANTGLGVNNID----QAWFESTEWYKFARTGRKTAQRSG 181

Query: 220 CGCMF 224
               F
Sbjct: 182 FTTAF 186

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 82.3 bits (202), Expect = 4e-19
 Identities = 27/177 (15%), Positives = 45/177 (25%), Gaps = 34/177 (19%)

Query: 60  YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVP--VLSLYLHKSRFDWKY 117
              +V+G G    V A RL E    + L+LE G    +          +     R  W  
Sbjct: 3   VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 118 RT------------------QPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRR 159
                                P       +   +     G+ +GG S++N  + V   R 
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 160 DFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPL 216
            F++         S E    YF ++                        +       
Sbjct: 122 YFEEI---LPRVDSSEMYDRYFPRAN----------SMLRVNHIDTKWFEDTEWYKF 165

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 82.4 bits (202), Expect = 4e-19
 Identities = 43/170 (25%), Positives = 62/170 (36%), Gaps = 15/170 (8%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPV-----LSLYLHKSRF 113
            YD+I+VG G  G + A+RLSE    KVLLLE GG  T+ T          S  L K   
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 114 DWKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWS 173
              + +   T +      K      G ++GG + +N  LY   N  DF           S
Sbjct: 61  PGLFESLF-TDSNPFWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSS---VGWPSS 116

Query: 174 YEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCM 223
           +    PY  K   +          + +T G   ++ S        +    
Sbjct: 117 WTNHAPYTSKLSSRLPST-----DHPSTDGQRYLEQSFNVVSQLLKGQGY 161

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.6 bits (107), Expect = 1e-06
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
           E D +VVG GSAG   A  +S+NPN +V ++E  
Sbjct: 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS 66

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (102), Expect = 6e-06
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          EYD IV+G G    +++  +S N   KVL ++   +
Sbjct: 6  EYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPY 40

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 11/170 (6%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGHETEITDVPVLSLYLHKSRFD 114
           +YD IV+G G    +++  LS +   KVL ++     GG    +T   +        +F 
Sbjct: 5   DYDVIVLGTGITECILSGLLSVD-GKKVLHIDKQDHYGGEAASVTLSQL------YEKFK 57

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSY 174
               ++    +         V    K +  +  L  +L      R  D     G+  +  
Sbjct: 58  QNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQ 117

Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWNTPLGFRCGCMF 224
            ++       ++  +  L  I        +L    S     L    G   
Sbjct: 118 GKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDL 167

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 58 MEYDFIVVGGGSAGNVVANRLS-----ENPNWKVLLLEAGGH 94
           E D ++VG G AG   A RL         + +V L+E   H
Sbjct: 31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
          M YD IV+GGG +G + A   +E     VLLL+ G
Sbjct: 1  MHYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKG 34

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          YD+I+VG G  G V AN L +  N KVL++E   H
Sbjct: 2  YDYIIVGSGLFGAVCANELKKL-NKKVLVIEKRNH 35

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.2 bits (95), Expect = 3e-05
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 60  YDFIVVGGGSAGNVVANRLSENPNWKVLLLEA---GGHETEITDVPVLSLYLHKSRFDWK 116
           YD IV+GGGS G   A R + + N KV L+E    GG    +  VP   ++   S  D  
Sbjct: 2   YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDIL 60

Query: 117 YRTQPGTTACQAMKDKRCVWTR 138
             ++      +   +   +  R
Sbjct: 61  ENSRHYGFDTKFSFNLPLLVER 82

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 23/168 (13%), Positives = 41/168 (24%), Gaps = 15/168 (8%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKY 117
           ++   +++GGG  G V A R  +      +L+E            +    L+      K 
Sbjct: 4   IQTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQ---------ALGGTCLNIGCIPSKA 53

Query: 118 RTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEV 177
                    QA    R        I  +S    +      +         G      +  
Sbjct: 54  LIHVAEQFHQAS---RFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHG 110

Query: 178 LPYFKKSMDQRNPYLAKID--RYHATGGYLTVQDSPWNTPLGFRCGCM 223
           +          +    ++D  R       L    S    P   R    
Sbjct: 111 VKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGF 158

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 28/159 (17%), Positives = 46/159 (28%), Gaps = 6/159 (3%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGHETEITDVPVLSLYLHKSRFD 114
           EYD +V+GGG  G   A   ++    KV ++E     GG    +  +P  +L  H +   
Sbjct: 6   EYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYKTLGGVCLNVGCIPSKALL-HNAAVI 63

Query: 115 WKYRTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSY 174
            + R            +      R    G  S L   L      R  D    DG     +
Sbjct: 64  DEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPH 123

Query: 175 EEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPWN 213
              +        ++     +          +       N
Sbjct: 124 HLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPN 162

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (92), Expect = 9e-05
 Identities = 23/168 (13%), Positives = 52/168 (30%), Gaps = 10/168 (5%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH------ETEITDVPVLSLYLHKSR 112
            +D +++GGG AG V A + ++   +    +E  G                L    H   
Sbjct: 5   SHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFH 63

Query: 113 FDWKYRTQPGTTACQAMKDKRCVWTRGK--VIGGSSVLNTMLYVRGNRRDFDQWAADGNE 170
                  + G      +K     + + K   +   +    +L+ +     +    +  +E
Sbjct: 64  QMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDE 123

Query: 171 GWSYEEVLPYFKKSMDQRNPYLAK-IDRYHATGGYLTVQDSPWNTPLG 217
                  +   + ++ + +    K I     +     V   P+   LG
Sbjct: 124 TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLG 171

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 21/155 (13%), Positives = 40/155 (25%), Gaps = 10/155 (6%)

Query: 58  MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKY 117
           +E + +VVG G  G V A R ++    KV ++E G       ++  + L +         
Sbjct: 2   IETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKG-------NLGGVCLNVGCIPSKALI 53

Query: 118 RTQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEV 177
                    +  ++         +            V+      +             E 
Sbjct: 54  SASHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGE- 112

Query: 178 LPYFKKSMDQRNPYLAKIDRYHATGGYLTVQDSPW 212
             YF  +   R         Y      +     P 
Sbjct: 113 -AYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI 146

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 11/82 (13%), Positives = 23/82 (28%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
            YD +V+G GS G       +     +V +++   H        +    ++      K  
Sbjct: 3   AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLM 62

Query: 119 TQPGTTACQAMKDKRCVWTRGK 140
                      +     W   +
Sbjct: 63  VTGANYMDTIRESAGFGWELDR 84

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 6/121 (4%)

Query: 57  LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA---GGHETEITDVPVLSLYLHKSRF 113
           +  YD++V+GGGS G   A R +E    +  ++E+   GG    +  VP   ++      
Sbjct: 1   VASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHS 59

Query: 114 DWKYRT--QPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEG 171
           ++ +        +       +     R   +   + +      + +       AA  ++ 
Sbjct: 60  EFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDP 119

Query: 172 W 172
            
Sbjct: 120 K 120

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          E D +++GGG  G V A + ++   +K   +E  G 
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRGA 37

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
           YD+I +GGGS G    NR +     K  L+EA 
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAK 34

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 9/63 (14%), Positives = 20/63 (31%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
            +D +V+G GS G   A   +     +V +++            +    ++      K  
Sbjct: 3   IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLM 62

Query: 119 TQP 121
              
Sbjct: 63  VTG 65

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 2/83 (2%)

Query: 59  EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYR 118
           ++D IV+G G  G V A + ++    K  L+E      E       +             
Sbjct: 3   KFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEK-YKGKEGKTALGGTCLNVGCIPSKALL 60

Query: 119 TQPGTTACQAMKDKRCVWTRGKV 141
                        K    + G+V
Sbjct: 61  DSSYKFHEAHESFKLHGISTGEV 83

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 37.3 bits (85), Expect = 8e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG 93
            D +VVG G AG   A   +++   KV+L+E   
Sbjct: 16 TVDVVVVGSGGAGFSAAISATDS-GAKVILIEKEP 49

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.3 bits (85), Expect = 9e-04
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 37 LYF--RYDLYDPETQIFDQKKLLMEYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEA 91
          +Y+  +Y+LY  +    +    ++E D +++GGG +G   A   +        KV L+E 
Sbjct: 1  VYYPKKYELYKAD----EVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK 56

Query: 92 G 92
           
Sbjct: 57 A 57

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
          +D IVVG GS G     +L++    K LL++A 
Sbjct: 4  FDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAF 35

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
          ++D I++GGGS G   A   ++  + KV++L+  
Sbjct: 3  DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFV 35

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
           + I++G G+AG   A +L++     V + + G  
Sbjct: 5  SENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKK 38

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
           Y+ +V+GGG  G+ +A  L++  N    L E+G
Sbjct: 4  HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESG 36

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.002
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
             D +++G G+AG  +A RL++    +V++L  G
Sbjct: 6  HSCDVLIIGSGAAGLSLALRLADQH--QVIVLSKG 38

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 58 MEYDFIVVGGGSAGNVVANRLSE-NPNWKVLLLEAG 92
           + D  +VG G AG   A   ++ NPN K+ L+   
Sbjct: 4  FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKV 39

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
           ++VG G +G V+  +L+E    +V +++   H
Sbjct: 5  ILIVGAGFSGAVIGRQLAEK-GHQVHIIDQRDH 36

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH 94
          EYD I +GGG+AG   +  L      + L+++    
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAM-GGRQLIVDRWPF 76

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG 92
            D +++G G AG   A    +    KV+LLE  
Sbjct: 23 TTDVVIIGSGGAGLAAAVSARDA-GAKVILLEKE 55

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 35.3 bits (79), Expect = 0.004
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%)

Query: 61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEA----GGH 94
            IVVG G +G   A RLSE     +L+LEA    GG 
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGR 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.95
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.95
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.88
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.86
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.68
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.13
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.08
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.69
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.65
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.62
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.59
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.58
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.56
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.56
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.56
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.56
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.5
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.5
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.45
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.44
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.42
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.42
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.41
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.41
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.41
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.4
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.4
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.36
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.31
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.31
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.28
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.26
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.25
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.25
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.25
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.24
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.21
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.2
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.2
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.16
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.14
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.13
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.12
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.11
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.08
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.05
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.02
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.99
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.96
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.89
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.88
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.81
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.57
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.56
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.5
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.31
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.27
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.2
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	97.01
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.0
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.0
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.95
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.95
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.88
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.85
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.74
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.74
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.67
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.66
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.65
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.63
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.33
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.3
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.22
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.03
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.98
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.95
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	95.88
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.73
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	95.71
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.67
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.57
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.52
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.51
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.42
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.26
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	95.2
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.03
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.53
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.19
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.25
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.87
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.72
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	91.56
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	90.73
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.06
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.01
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.65
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.99
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	88.58
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	87.6
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	87.48
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.1
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.32
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	85.85
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	85.17
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.68
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	82.73
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	82.09
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	81.1
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	80.3
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	80.14

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=5e-36  Score=270.42  Aligned_cols=148  Identities=31%  Similarity=0.531  Sum_probs=126.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc---ccccchhhhhccCCCCCCccccCCCccccccccCCce
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~---~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      ++|||||||||+|||++|+||||++++||||||||+....   ..++|.....+..+.+||+|.++|+.      +++.+
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~------~~r~~   96 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLI------NNRTN   96 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCT------TSCCC
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecC------CCcEe
Confidence            5799999999999999999999999899999999986432   23456554455677899999999873      57888


Q ss_pred             eeccceEecCCccccceeeecCChhhhHHHhh-CCCCCCChhchHHHHHHHHhcCCCC-------CCCCCCCCCCCcceE
Q psy7388         135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAA-DGNEGWSYEEVLPYFKKSMDQRNPY-------LAKIDRYHATGGYLT  206 (224)
Q Consensus       135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~-~G~~gWsy~~l~pyf~k~E~~~~p~-------~~~~~~~hg~~Gpl~  206 (224)
                      .+++||+|||||++|+|+|+|+++.||+.|.. .|+++|+|++++|||+|+|++..+.       ...+..+||..||++
T Consensus        97 ~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  176 (391)
T d1gpea1          97 NIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQ  176 (391)
T ss_dssp             EECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSSSEE
T ss_pred             eeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCCccc
Confidence            99999999999999999999999999999987 5889999999999999999986542       123456899999999


Q ss_pred             EeeCC
Q psy7388         207 VQDSP  211 (224)
Q Consensus       207 v~~~~  211 (224)
                      ++...
T Consensus       177 ~~~~~  181 (391)
T d1gpea1         177 SGARD  181 (391)
T ss_dssp             EBCCC
T ss_pred             ccccc
Confidence            98654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=5.6e-35  Score=262.38  Aligned_cols=149  Identities=28%  Similarity=0.474  Sum_probs=123.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCc---ccccchhhhhccCCCCCCccccCCCccccccccCCce
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETE---ITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~---~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      ++|||||||||+|||++|+||+|++++||||||||+....   ....|.....+..++++|.|.++++.     ++++.+
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~~-----~~~r~~   90 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-----TNNQTA   90 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-----TTSCCC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCcC-----CCCcee
Confidence            5799999999999999999999998899999999986432   12233333334567899999987653     578889


Q ss_pred             eeccceEecCCccccceeeecCChhhhHHHhhC-CCCCCChhchHHHHHHHHhcCCCC-------CCCCCCCCCCCcceE
Q psy7388         135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAAD-GNEGWSYEEVLPYFKKSMDQRNPY-------LAKIDRYHATGGYLT  206 (224)
Q Consensus       135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~-G~~gWsy~~l~pyf~k~E~~~~p~-------~~~~~~~hg~~Gpl~  206 (224)
                      .+++||+|||||++|+|+|+|+++.|||.|+.. ++++|+|++++|||+|+|++..+.       ...+..+||..||+.
T Consensus        91 ~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~~~~  170 (385)
T d1cf3a1          91 LIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVH  170 (385)
T ss_dssp             EECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEE
T ss_pred             eecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCccccc
Confidence            999999999999999999999999999999985 789999999999999999986653       123456899999999


Q ss_pred             EeeCC
Q psy7388         207 VQDSP  211 (224)
Q Consensus       207 v~~~~  211 (224)
                      ++...
T Consensus       171 ~~~~~  175 (385)
T d1cf3a1         171 AGPRD  175 (385)
T ss_dssp             EBCCC
T ss_pred             ccccc
Confidence            98643

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.95  E-value=1.9e-29  Score=224.41  Aligned_cols=137  Identities=31%  Similarity=0.353  Sum_probs=103.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccc----cchhhh-hccC---CCCCCccccCCCcccccccc
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITD----VPVLSL-YLHK---SRFDWKYRTQPGTTACQAMK  130 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~----~p~~~~-~~~~---~~~~w~~~t~p~~~~~~~~~  130 (224)
                      .|||||||||+|||++|.||||++ .||||||||+.......    .|.... ....   ....|.+.+.++..    +.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g-~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   76 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAG-KKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNPF----WW   76 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCCT----TB
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCC-CeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCcc----cC
Confidence            699999999999999999999997 89999999975432111    111110 0111   12345566666653    46


Q ss_pred             CCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcCCCCCCCCCCCCCCCcceEEe
Q psy7388         131 DKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNPYLAKIDRYHATGGYLTVQ  208 (224)
Q Consensus       131 ~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~~p~~~~~~~~hg~~Gpl~v~  208 (224)
                      ++.+.+++||+|||||+||+|+|+|+++.||+.|..  . .|+|++++|||+|+|+....     ..+|+.+|++.++
T Consensus        77 ~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~g--w-p~~~~~l~py~~~~e~~~~~-----~~~~~~~g~~~~~  146 (360)
T d1kdga1          77 CKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVG--W-PSSWTNHAPYTSKLSSRLPS-----TDHPSTDGQRYLE  146 (360)
T ss_dssp             CTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGT--C-CGGGSCCHHHHHHHHHHSCC-----BSCCSTTSCCCSC
T ss_pred             Cccccccceeeecchhccccccccccchhhheeccc--c-cccccchhhhhhhhhccccc-----cceecCCCccccc
Confidence            778889999999999999999999999999998851  1 24899999999999997643     3367788887764

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.95  E-value=4.3e-29  Score=221.80  Aligned_cols=124  Identities=27%  Similarity=0.433  Sum_probs=97.0

Q ss_pred             hcCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccchhhhhccCCCCCCccccCCCccccccccCCce
Q psy7388          55 KLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPVLSLYLHKSRFDWKYRTQPGTTACQAMKDKRC  134 (224)
Q Consensus        55 ~~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~  134 (224)
                      ++..+|||||||||+|||++|.||||+  +||||||||+.+....+++....+......+|.+.+.++.    .+.++.+
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae~--~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   95 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER----FVSEDGI   95 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTTT--SCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEE----EECTTSC
T ss_pred             cccCCccEEEECccHHHHHHHHHhcCC--CCEEEEecCCCCcCccccccchhhhccCcCCCCCCCcccc----ccCCCce
Confidence            345689999999999999999999995  8999999998643322322222222222345555555554    3567789


Q ss_pred             eeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcC
Q psy7388         135 VWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQR  188 (224)
Q Consensus       135 ~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~  188 (224)
                      .++|||+|||||+||+|+|+|+++.||+.|.    .+|+|++++|||+++|+..
T Consensus        96 ~~~rG~~lGGsS~in~~~~~R~~~~dfd~~~----~~W~~~~~~p~~~~~e~~~  145 (351)
T d1ju2a1          96 DNVRGRVLGGTSIINAGVYARANTSIYSASG----VDWDMDLVNQTYEWVEDTI  145 (351)
T ss_dssp             EEEEECBTTGGGGTSCCEECBCCTTSSTTSS----SCCCHHHHHHHHHHHHHHH
T ss_pred             eeeeeeecccccccceeeeccCCHHHHhhcc----cccChhHhCcceeeccccc
Confidence            9999999999999999999999999999985    6899999999999999753

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.88  E-value=2.3e-23  Score=183.34  Aligned_cols=128  Identities=18%  Similarity=0.136  Sum_probs=95.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCcccccch-hhh------------------hccCCCCCCccc
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEITDVPV-LSL------------------YLHKSRFDWKYR  118 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~~~p~-~~~------------------~~~~~~~~w~~~  118 (224)
                      ++||+||||||++|+++|.||+|++ ++|||||+|++.......+. +..                  ......+.|++.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG-~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAG-IPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINKS   84 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCCB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCC-CeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCcc
Confidence            6799999999999999999999986 99999999975432111100 000                  000112445555


Q ss_pred             cCCCccccccccCCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcCC
Q psy7388         119 TQPGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRN  189 (224)
Q Consensus       119 t~p~~~~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~~  189 (224)
                      ..+..........+.+.++++++|||+|.+|+++++|+++.||+.|..   ..+.+++++|||+++|+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~---~~~~~~~~~~~y~~~e~~lg  152 (370)
T d3coxa1          85 IDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP---SVDSNEMYNKYFPRANTGLG  152 (370)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHT
T ss_pred             cccccccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccc---cCCcHHHHHHHHHHHHHhcC
Confidence            555555455566777889999999999999999999999999999974   23357889999999998643

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.86  E-value=1.9e-22  Score=177.00  Aligned_cols=127  Identities=23%  Similarity=0.241  Sum_probs=87.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCccc-ccchhhhhc-cCCCCCCcc--ccC---------------
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEIT-DVPVLSLYL-HKSRFDWKY--RTQ---------------  120 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~-~~p~~~~~~-~~~~~~w~~--~t~---------------  120 (224)
                      +|+||||||++|+++|+||+|++ +||||||+|....... ..+.+.... ......|..  ...               
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG-~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAG-VQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNI   81 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCBC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCc-CeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCccc
Confidence            79999999999999999999986 9999999997543211 111110000 011112211  111               


Q ss_pred             -CCccccccccCCceeeccceEecCCccccceeeecCChhhhHHHhhCCCCCCChhchHHHHHHHHhcCCC
Q psy7388         121 -PGTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADGNEGWSYEEVLPYFKKSMDQRNP  190 (224)
Q Consensus       121 -p~~~~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G~~gWsy~~l~pyf~k~E~~~~p  190 (224)
                       +..........+.+.+++|++|||+|.+|+++++|+++.||+.|..   ..|.+++++|||+++|+...+
T Consensus        82 ~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~  149 (367)
T d1n4wa1          82 DPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRV  149 (367)
T ss_dssp             CCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTC
T ss_pred             ccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCC
Confidence             1111112234566788999999999999999999999999999964   334688999999999986543

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.68  E-value=8.3e-19  Score=151.90  Aligned_cols=130  Identities=22%  Similarity=0.281  Sum_probs=78.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCCccc--ccchh-----------hhhccCC-------CCCCc
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHETEIT--DVPVL-----------SLYLHKS-------RFDWK  116 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~~~~--~~p~~-----------~~~~~~~-------~~~w~  116 (224)
                      ..+|||||||||+||+++|.||+|++ +||||||+|+......  ..+..           ....+..       ...|.
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G-~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAG-YKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCC-CeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            46899999999999999999999986 8999999998643211  00000           0000000       00000


Q ss_pred             cccCC-------------CccccccccCCceeeccceEecCCccccceeeecCChhhhHHHhhCC----CCCC--Chhch
Q psy7388         117 YRTQP-------------GTTACQAMKDKRCVWTRGKVIGGSSVLNTMLYVRGNRRDFDQWAADG----NEGW--SYEEV  177 (224)
Q Consensus       117 ~~t~p-------------~~~~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~~~G----~~gW--sy~~l  177 (224)
                      .....             ..............+.+++.+||+|.+|.+++.|..+.||+.|...+    ...|  .|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhh
Confidence            00000             00000000011122456788999999999999999999998765432    1234  67888


Q ss_pred             HHHHHHHHhc
Q psy7388         178 LPYFKKSMDQ  187 (224)
Q Consensus       178 ~pyf~k~E~~  187 (224)
                      ++||.+.++.
T Consensus       161 ~~~~~~~~~~  170 (379)
T d2f5va1         161 ESYFQTGTDQ  170 (379)
T ss_dssp             HHHHTEESCT
T ss_pred             hhhhhHHHHH
Confidence            8888876654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=4.3e-11  Score=94.18  Aligned_cols=38  Identities=32%  Similarity=0.488  Sum_probs=34.8

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.++||+||||||.+|+++|.+|+++| ++|+|||+...
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G-~~V~vlE~~~~   39 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDG-KKVLHIDKQDH   39 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCC-CCEEEEcCCCC
Confidence            457899999999999999999999997 89999999754

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=5.5e-09  Score=92.25  Aligned_cols=39  Identities=36%  Similarity=0.555  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSE-----NPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae-----~~~~~VLlLEaG~~~   95 (224)
                      .++||+||||+|+||+++|.+|++     ..+.+|||||++...
T Consensus        30 ~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          30 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             cccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            457999999999999999999996     234999999999754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.65  E-value=8.5e-09  Score=84.93  Aligned_cols=36  Identities=31%  Similarity=0.557  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +++||+||||+|.+|+.+|..|++.+ .+|+|||++.
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~~G-~~V~vlE~~~   37 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAKEN-KNTALFESGT   37 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCC
Confidence            46899999999999999999999997 8999999975

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.62  E-value=1.2e-08  Score=82.94  Aligned_cols=35  Identities=43%  Similarity=0.705  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+||||+|++|+.+|.+|++.+ .+|+|||+++.
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G-~~V~liEk~~~   36 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEG-ANVLLLDKGNK   36 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            699999999999999999999997 89999999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.59  E-value=1.4e-08  Score=83.71  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+.||+||||+|+||+++|.+|++.+ .+|+|||+++..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~~G-~~V~vlEk~~~~   39 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAKLG-KSVTVFDNGKKI   39 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHCC-CcEEEEecCCCC
Confidence            35799999999999999999999997 899999999753

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.58  E-value=1.7e-08  Score=83.64  Aligned_cols=36  Identities=36%  Similarity=0.516  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|.+|+.+|.+|++.+ .+|+|||++..
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G-~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQG-VKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            5799999999999999999999987 89999999753

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=2.2e-08  Score=80.17  Aligned_cols=35  Identities=40%  Similarity=0.591  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|+||..+|.++++.+ .||+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G-~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYG-QKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTT-CCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CEEEEEeccC
Confidence            4799999999999999999999987 8999999975

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.56  E-value=1.7e-08  Score=80.36  Aligned_cols=35  Identities=31%  Similarity=0.463  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ++||+||||+|+||+++|.+|++.+ +||+|||.+.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G-~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLG-LKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHT-CCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CeEEEEeccc
Confidence            5799999999999999999999987 9999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.8e-08  Score=80.90  Aligned_cols=38  Identities=26%  Similarity=0.475  Sum_probs=34.3

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.++||+||||+|+||+.+|.+|++.+ .||+|||..+.
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G-~kV~lie~~~~   39 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLG-FNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSSS
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCC-CcEEEEEecCC
Confidence            457899999999999999999999987 89999998654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.56  E-value=1.9e-08  Score=84.55  Aligned_cols=36  Identities=33%  Similarity=0.396  Sum_probs=33.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|.+|+.+|.+|++.+ .||+|||+++.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G-~~V~lvEK~~~   50 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSG-AKVILIEKEPV   50 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCC-CcEEEEecCCC
Confidence            5799999999999999999999997 89999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.50  E-value=3.6e-08  Score=78.70  Aligned_cols=36  Identities=31%  Similarity=0.527  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|+||+.+|..+++.+ .||+|||+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G-~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLG-FKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHT-CCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCC-CcEEEEEecCC
Confidence            5799999999999999999999987 89999998653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=3.5e-08  Score=83.83  Aligned_cols=34  Identities=47%  Similarity=0.738  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ||+||||||.+|+++|.+|++.+ .+|+|||+...
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g-~~V~iiEk~~~   35 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLN-KKVLVIEKRNH   35 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGT-CCEEEECSSSS
T ss_pred             ccEEEECCcHHHHHHHHHHHhCC-CcEEEEECCCC
Confidence            89999999999999999999986 89999999543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=4.1e-08  Score=79.33  Aligned_cols=35  Identities=31%  Similarity=0.558  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+||||+|+||..+|.++++.+ .||+|||.++.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G-~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFD-KKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGC-CCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence            699999999999999999999987 99999998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.45  E-value=6.3e-08  Score=77.81  Aligned_cols=33  Identities=36%  Similarity=0.551  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      |++|||||++|+++|.+|++.+ .+|+|||+...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G-~~V~vlE~~~~   34 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRG-TDAVLLESSAR   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTT-CCEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCC-CCEEEEecCCC
Confidence            7999999999999999999997 89999999643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.44  E-value=6e-08  Score=82.32  Aligned_cols=38  Identities=29%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+++|+||||+|.+|+.+|.+|++.+ .||+|||+++.
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~~G-~~V~llEk~~~   57 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARDAG-AKVILLEKEPI   57 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHTTT-CCEEEECSSSS
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            356899999999999999999999997 89999999764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.42  E-value=8.6e-08  Score=76.26  Aligned_cols=35  Identities=37%  Similarity=0.495  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+||||+|+||+.+|..+++.+ .||+|||++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G-~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLG-QKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCC-CEEEEEecCCC
Confidence            699999999999999999999987 89999999863

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.42  E-value=8.9e-08  Score=79.89  Aligned_cols=37  Identities=43%  Similarity=0.600  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|++|+.+|.+|+++.+.+|+|||+.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            5899999999999999999999864499999999864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.41  E-value=8.4e-08  Score=77.62  Aligned_cols=36  Identities=33%  Similarity=0.522  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|+||+.+|..|++.+ .+|+|||+.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G-~~V~viE~~~~   40 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEG-LKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCEEEEESSSC
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCC-CeEEEEeccCC
Confidence            5799999999999999999999987 89999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.41  E-value=7.7e-08  Score=81.48  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.||+||||+|+||+.+|.+|++++ .+|+|||+++.
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G-~~V~liEK~~~   39 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKG-LSTIVLSLIPV   39 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTT-CCEEEECSSCG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCC-CCEEEEecCCC
Confidence            4689999999999999999999997 89999999753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=9.5e-08  Score=76.28  Aligned_cols=36  Identities=33%  Similarity=0.554  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+||+||||+|+||+.+|.++++.+ .+|+|||.+..
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~G-~kV~vIEk~~~   37 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAELG-ARAAVVESHKL   37 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCT
T ss_pred             CccCEEEECCCHHHHHHHHHHHHCC-CEEEEEeccCC
Confidence            3699999999999999999999987 89999998753

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.40  E-value=1.1e-07  Score=73.92  Aligned_cols=35  Identities=46%  Similarity=0.547  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .|+||||||+||+++|.+|++.|-.+|+|||+...
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            48999999999999999999997236999999754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.1e-07  Score=76.73  Aligned_cols=36  Identities=31%  Similarity=0.390  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++.++||||||.+|+++|.+|++.| .+|+|||+...
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G-~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFG-MDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            5688999999999999999999997 89999999754

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.4e-07  Score=78.11  Aligned_cols=32  Identities=41%  Similarity=0.640  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      |+||||||.+|+++|.+|++.| .+|+|||+..
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G-~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSG-LNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCC-CCEEEEecCC
Confidence            8999999999999999999997 8999999855

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.31  E-value=1.3e-07  Score=80.20  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+++|+||||+|.+|+.+|.+|++.+ .+|+|||+++.
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G-~~V~vlEK~~~   53 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAG-ANVILVDKAPF   53 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHT-CCEEEECSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence            46899999999999999999999997 89999999864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.31  E-value=2.3e-07  Score=76.65  Aligned_cols=33  Identities=45%  Similarity=0.710  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ||+||||+|+||..+|.++++.+ .||+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G-~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHN-AKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCC-CeEEEEecCC
Confidence            99999999999999999999997 8999999875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.5e-07  Score=77.88  Aligned_cols=35  Identities=31%  Similarity=0.586  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|+||+.+|.++++.+  ||+|||+++.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g--~V~llEK~~~   40 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH--QVIVLSKGPV   40 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS--CEEEECSSCT
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC--CEEEEECCCC
Confidence            5799999999999999999998864  8999999864

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.26  E-value=3.5e-07  Score=73.01  Aligned_cols=32  Identities=31%  Similarity=0.485  Sum_probs=29.8

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||||||+||+++|.+|++.+ .+|+|||+.+.
T Consensus         4 V~IIGaG~aGL~aA~~La~~G-~~V~vlE~~~~   35 (373)
T d1seza1           4 VAVIGAGVSGLAAAYKLKIHG-LNVTVFEAEGK   35 (373)
T ss_dssp             EEEECCSHHHHHHHHHHHTTS-CEEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHhCC-CCEEEEeCCCC
Confidence            899999999999999999987 89999999654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=3.2e-07  Score=71.07  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=30.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      .||+||||||++|+.+|..+++.+ .+|+|||..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~G-~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARKG-IRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTT-CCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcC-CeEEEEEEe
Confidence            399999999999999999999987 899999973

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.25  E-value=4.3e-07  Score=72.60  Aligned_cols=36  Identities=22%  Similarity=0.311  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.||+||||+|+||..+|.++++.+..+|+|+|...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~   37 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQM   37 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeec
Confidence            579999999999999999999998766899999864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=2e-07  Score=79.69  Aligned_cols=36  Identities=31%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|.||+.+|.++++++ .+|+|||.++.
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G-~~V~lleK~~~   41 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSG-QTCALLSKVFP   41 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTT-CCCEEECSSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcC-CeEEEEeCCCC
Confidence            5899999999999999999999987 89999999764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.24  E-value=2.9e-07  Score=73.77  Aligned_cols=35  Identities=26%  Similarity=0.497  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+||+||||+|++|..+|.++++.+ .+|+|||.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G-~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLG-IPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHT-CCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCC-CcEEEEecCC
Confidence            4799999999999999999999987 8999999875

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.21  E-value=5.6e-07  Score=71.91  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      ..+.++||||+|.+|+.+|.+|++++ .+|+|||++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G-~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKG-YSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence            35678999999999999999999997 7999999964

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.20  E-value=4.7e-07  Score=76.97  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~   94 (224)
                      .++|+||||+|+||+.+|.+|++   +.+.+|+|||+++.
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~   59 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   59 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence            36999999999999999999986   33489999998754

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.20  E-value=4.4e-07  Score=74.29  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..++||||||++|+++|.+|+++| .+|+|||+.+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G-~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAG-HQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHT-CEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            4569999999999999999999997 89999999753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.16  E-value=7.4e-07  Score=74.22  Aligned_cols=34  Identities=21%  Similarity=0.402  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .|+||||+|.+|+.+|.+|++.+..+|+|||++.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            5999999999999999999998734699999985

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.14  E-value=5.4e-07  Score=72.97  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++||+||||+|+||..+|.++++.+..+|+|+|....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            5799999999999999999999976457999998653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.13  E-value=1.1e-06  Score=72.41  Aligned_cols=38  Identities=29%  Similarity=0.363  Sum_probs=34.4

Q ss_pred             cCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          56 LLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        56 ~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..++||+||||+|++|..+|.+|++.+ .+|+|||.++.
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G-~kv~vve~~~~   76 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMG-GRQLIVDRWPF   76 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCC-CeEEEEeccCc
Confidence            346899999999999999999999997 89999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.12  E-value=9.4e-07  Score=75.18  Aligned_cols=37  Identities=35%  Similarity=0.437  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .+++|+||||+|++|+++|.+|.+.+ .+|+|+|+++.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G-~~v~i~Ek~~~   41 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELG-RSVHVIETAGD   41 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCC-CCEEEEEcCCC
Confidence            46899999999999999999999987 89999999864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.11  E-value=1e-06  Score=72.86  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .||+||||+|+||+.+|...++.+ .||||||.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G-~ktllit~   33 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKG-VRVGLLTQ   33 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTT-CCEEEEES
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC-CcEEEEEe
Confidence            599999999999999999999997 99999986

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.08  E-value=1.1e-06  Score=73.54  Aligned_cols=38  Identities=34%  Similarity=0.565  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhc----CCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSE----NPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae----~~~~~VLlLEaG~~~   95 (224)
                      ..||+||||+|++|+++|.-|++    ..+++|+|||+-+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            46999999999999999999984    234999999997653

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.05  E-value=1.7e-06  Score=69.83  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +|+||||+|++|+++|..|++.|-.+|+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            799999999999999999999872389999998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.02  E-value=1.6e-06  Score=71.55  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|++|||+|++|+++|..|++.+ ++|+|||+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G-~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAG-IDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHT-CCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            579999999999999999999987 89999999763

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.99  E-value=2.5e-06  Score=72.68  Aligned_cols=33  Identities=27%  Similarity=0.619  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -+||||||.+|+++|.+|++++ .+|+|+|+...
T Consensus         4 KI~IIGaG~sGL~aA~~L~k~G-~~V~viEk~~~   36 (314)
T d2bi7a1           4 KILIVGAGFSGAVIGRQLAEKG-HQVHIIDQRDH   36 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhCC-CCEEEEECCCC
Confidence            4899999999999999999986 89999998765

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=3.1e-06  Score=71.76  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      .++|+||||||.||+.+|.++++. ++.+|+|||.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            479999999999999999999985 3589999998763

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.5e-06  Score=65.86  Aligned_cols=36  Identities=17%  Similarity=0.287  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +..|++|||+|++|+.+|..|++.+ .+|+|||+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g-~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARAN-LQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTT-CCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEEeecc
Confidence            4689999999999999999999987 89999998753

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.88  E-value=5.4e-06  Score=66.76  Aligned_cols=35  Identities=26%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .-.++|||+|++|+++|..|++++ ++|.|||+.+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G-~~v~v~Er~~~   38 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAG-VDVDVYERSPQ   38 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCC-CCEEEEeCCCC
Confidence            356999999999999999999997 89999998654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=6.4e-06  Score=69.37  Aligned_cols=38  Identities=34%  Similarity=0.538  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      ..++|++|||+|++|+.+|..|+++ .+.+|+|+|+...
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            3579999999999999999999973 4599999999864

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=5.2e-06  Score=65.21  Aligned_cols=36  Identities=25%  Similarity=0.250  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..+|+||||||++|+.+|..|++.+ .+|+|+|++..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g-~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAE-LKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTT-CCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcC-CcEEEEEeecc
Confidence            4699999999999999999999987 89999997754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.57  E-value=3.3e-05  Score=62.22  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ...-+++|||+|+||..+|..|++.+ .+|.|+|+....
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G-~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESG-YTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhc-cceeeEeecccc
Confidence            35689999999999999999999987 899999998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=4.1e-05  Score=60.45  Aligned_cols=37  Identities=27%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .....++|||||+||+.+|..|++.+ .+|.|+|+-+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G-~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARG-HQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTT-CEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhc-cceEEEeccCc
Confidence            35689999999999999999999997 89999999764

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.50  E-value=4.7e-05  Score=58.64  Aligned_cols=35  Identities=17%  Similarity=0.174  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -++|||||++|+.+|..|++.|...|.|+|+.+..
T Consensus         6 kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           6 KIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            48999999999999999999983259999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.31  E-value=4.7e-05  Score=60.29  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC------CCeEEEeecCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENP------NWKVLLLEAGGH   94 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~------~~~VLlLEaG~~   94 (224)
                      .+.+.|||||+||+.+|..|++.+      +.+|.|+|+.+.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            368999999999999999999864      268999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.27  E-value=0.0001  Score=58.61  Aligned_cols=35  Identities=29%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      -++|||+|+||+.+|..|.++ .+.+|.|+|+.+..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            589999999999999999764 24799999999753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.20  E-value=0.00016  Score=60.87  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCC-CCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP-NWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~-~~~VLlLEaG~~   94 (224)
                      -++|||||++|+++|..|.+.+ ..+|.|+|+...
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            3899999999999999998764 369999999864

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.00028  Score=56.53  Aligned_cols=34  Identities=24%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCC--CCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENP--NWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~--~~~VLlLEaG~~   94 (224)
                      ++||||+|+||..+|.++++.+  ..+|+|+|++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            6899999999999998877632  368999998753

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00039  Score=55.25  Aligned_cols=38  Identities=24%  Similarity=0.475  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      .+++|||||+|++|+.+|.+|.+. ...+|+||++.+..
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            579999999999999999999763 34689999886653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.00  E-value=0.00038  Score=50.17  Aligned_cols=35  Identities=29%  Similarity=0.439  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      =.++|||+|..|+-+|..|++.+ .+|.|+|+++..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G-~~Vtlve~~~~i   57 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFG-TKVTILEGAGEI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CeEEEECCCccceeeeeeecccc-cEEEEEEeccee
Confidence            36999999999999999999997 899999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.95  E-value=0.00044  Score=51.58  Aligned_cols=34  Identities=32%  Similarity=0.592  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~   94 (224)
                      -+||||+|++|..+|.+|.+. ++.+|.|||+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            479999999999999999985 3578999998764

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.95  E-value=5.2e-05  Score=59.81  Aligned_cols=29  Identities=28%  Similarity=0.283  Sum_probs=25.5

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      ++|||+|.+|+.+|.+|++++ .+|+++|+
T Consensus         3 V~VIGaGi~GlstA~~L~~~G-~~v~v~e~   31 (246)
T d1kifa1           3 VVVIGAGVIGLSTALCIHERY-HSVLQPLD   31 (246)
T ss_dssp             EEEECCSHHHHHHHHHHHHHH-TTTSSSCE
T ss_pred             EEEECchHHHHHHHHHHHHCC-CCceEEee
Confidence            799999999999999999987 67766665

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.88  E-value=0.00042  Score=50.53  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -+++|||+|+.|+-+|..|++.+ .+|.|+|+++..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g-~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAG-YHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTT-CEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhccc-ceEEEEeccccc
Confidence            47999999999999999999987 899999999764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.85  E-value=0.00062  Score=49.76  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|+.|+-+|..|++.+ .+|.|+|+++..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g-~~Vtli~~~~~~   65 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAG-VHVSLVETQPRL   65 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSST
T ss_pred             CCeEEEECcchhHHHHHHHhhccc-ceEEEEeecccc
Confidence            457999999999999999999986 899999999864

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0008  Score=48.56  Aligned_cols=35  Identities=23%  Similarity=0.166  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      -++|||+|..|+-+|..|++.+ .+|.|+|+++...
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G-~~Vtlve~~~~~l   57 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLG-AKTHLFEMFDAPL   57 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccc-cEEEEEeecchhh
Confidence            3899999999999999999987 8999999998643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.74  E-value=0.001  Score=50.29  Aligned_cols=35  Identities=29%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      =|++|||+|++|+-+|..|.+.+ .+|.++|.....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g-~~v~v~~~~~~~   38 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDAT   38 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CCSEEEEECSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcC-CceEEEEecCcc
Confidence            37999999999999999999976 677677766543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.74  E-value=0.00061  Score=49.01  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|+.|+-+|.-|++.+ .+|.|+|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g-~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLG-AQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHT-CEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcc-cceEEEeeeccc
Confidence            5999999999999999999987 899999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.67  E-value=0.001  Score=48.51  Aligned_cols=35  Identities=20%  Similarity=0.312  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|+.|+-+|..|++.+ .+|.|+|+.+..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g-~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAG-KKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhccc-eEEEEEEecCcc
Confidence            47899999999999999999987 899999999754

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.00083  Score=60.55  Aligned_cols=41  Identities=24%  Similarity=0.385  Sum_probs=36.8

Q ss_pred             hcCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          55 KLLMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        55 ~~~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      ++.++||+||+|.|..=|++|..||..| .|||-|++-..+.
T Consensus         2 ~lP~e~DVII~GTGL~ESILAaAlSr~G-kkVLHiD~N~yYG   42 (491)
T d1vg0a1           2 NLPSDFDVIVIGTGLPESIIAAACSRSG-QRVLHVDSRSYYG   42 (491)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHHTT-CCEEEECSSSSSC
T ss_pred             CCCCccCEEEECCChHHHHHHHHHHhcC-CEEEEecCCCcCC
Confidence            3567999999999999999999999998 8999999987653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.65  E-value=0.00099  Score=49.29  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .-.++|||+|+.|+-+|..|++.+ .+|.|+|+++..
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g-~~Vtvie~~~~~   70 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKAN-MHVTLLDTAARV   70 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSST
T ss_pred             CCEEEEECCchHHHHHHHHHHhhC-cceeeeeecccc
Confidence            357999999999999999999987 899999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.63  E-value=0.0011  Score=47.98  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      -++|||+|..|+-+|.-|++.+ .+|.|+|++...
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g-~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLG-IDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTT-CEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhcc-ccceeeehhccc
Confidence            4899999999999999999987 899999999764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0021  Score=46.83  Aligned_cols=34  Identities=24%  Similarity=0.161  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|..|++.+ .+|.|+|++...
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G-~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALG-SKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCC-cEEEEEeecccc
Confidence            5899999999999999999987 899999999764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.0022  Score=46.58  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      -++|||+|..|+-+|.-|++.+ .+|.|+|+.+...
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG-~~Vtii~~~~~~l   59 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLG-SKVTVVEFQPQIG   59 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CEEEEECSSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhC-cceeEEEeccccc
Confidence            5899999999999999999987 8999999998643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.22  E-value=0.0034  Score=45.27  Aligned_cols=35  Identities=23%  Similarity=0.157  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      =..+|||+|..|+-+|.-|++.+ .+|.++|+....
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G-~~Vtiv~~~~~l   57 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLG-AEVTVLEAMDKF   57 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHcC-CceEEEEeeccc
Confidence            45899999999999999999987 899999999764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.03  E-value=0.0038  Score=44.60  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      --++|||+|..|+-+|..|+..+ .+|.++|+++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATG-RRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhcc-hhheEeeccchh
Confidence            36899999999999999999986 899999999754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.98  E-value=0.0041  Score=47.90  Aligned_cols=34  Identities=24%  Similarity=0.363  Sum_probs=29.6

Q ss_pred             EEEECCChHHHHHHHHHhcC-CCCeEEEeecCCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSEN-PNWKVLLLEAGGHE   95 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~-~~~~VLlLEaG~~~   95 (224)
                      ++|||+|.+|+-+|..|.+. ++.+|.++|++...
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            79999999999999999874 45789999998754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.95  E-value=0.0023  Score=48.64  Aligned_cols=34  Identities=21%  Similarity=0.332  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -.++|||+|++|+-+|..|.+.+ .+|.+++.+..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g-~~v~i~~~~~~   37 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAG-YQGLITVVGDE   37 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHT-CCSCEEEEESS
T ss_pred             CCEEEECccHHHHHHHHHHHhcC-CceEEEEEecc
Confidence            45999999999999999999875 56666665543

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.88  E-value=0.0047  Score=45.87  Aligned_cols=32  Identities=25%  Similarity=0.519  Sum_probs=27.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ++|||+|++|+-+|..|++ . .+|.|+|+.+..
T Consensus         3 VvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~~~~   34 (167)
T d1xhca1           3 VVIVGNGPGGFELAKQLSQ-T-YEVTVIDKEPVP   34 (167)
T ss_dssp             EEEECCSHHHHHHHHHHTT-T-SEEEEECSSSSC
T ss_pred             EEEECCcHHHHHHHHHHHc-C-CCEEEEeccccc
Confidence            6999999999999999986 3 699999987653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.73  E-value=0.0043  Score=45.35  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|..|+-+|.-|++.+ .+|.++|+++.-
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G-~~Vtive~~~~i   61 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLG-SRLDVVEMMDGL   61 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHT-CEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCC-CEEEEEEeeccc
Confidence            5899999999999999999987 899999999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.71  E-value=0.0062  Score=43.57  Aligned_cols=34  Identities=24%  Similarity=0.223  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~~   95 (224)
                      .++|||+|+.|+-+|.-|++   ++ .+|.|+|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~-~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKD-GQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTT-CEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCC-cEEEEEeccchh
Confidence            69999999999999965554   43 689999999764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.67  E-value=0.0049  Score=45.91  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=29.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++|||+|-.|..+|.+|++++ .+|.|+++-..
T Consensus         5 IliiGaG~~G~~~a~~L~~~g-~~V~v~dr~~~   36 (182)
T d1e5qa1           5 VLMLGSGFVTRPTLDVLTDSG-IKVTVACRTLE   36 (182)
T ss_dssp             EEEECCSTTHHHHHHHHHTTT-CEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHhCC-CEEEEEECChH
Confidence            689999999999999999997 79999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.57  E-value=0.007  Score=43.81  Aligned_cols=32  Identities=19%  Similarity=0.092  Sum_probs=29.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      -++|||+|..|+-+|.-|++.+ .+|.|||+..
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG-~~Vtii~~~~   53 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIG-LDVTVMVRSI   53 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTT-CCEEEEESSS
T ss_pred             eEEEECCCccHHHHHHHHhhcC-CeEEEEEech
Confidence            5999999999999999999997 8999999753

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.52  E-value=0.0042  Score=45.03  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHET   96 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~~   96 (224)
                      .++|||+|..|+-+|.-|++.| .+|.|||+++...
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G-~~Vtvi~~~~~~l   61 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIG-SEVTVVEFASEIV   61 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHT-CEEEEECSSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcC-CeEEEEEEccccC
Confidence            5789999999999999999987 8999999998654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.51  E-value=0.0054  Score=44.45  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .|||||.|..|..+|.+|.+.+ ..|+++|.-+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g-~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMG-HEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCC-CeEEEecCcHH
Confidence            4899999999999999999987 89999998653

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.42  E-value=0.0071  Score=45.57  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|||+|..|+.+|..|++++ .+|.++++.+
T Consensus         4 iaIiGaG~~G~~~A~~l~~~G-~~V~~~~r~~   34 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLALKG-QSVLAWDIDA   34 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             EEEECccHHHHHHHHHHHHCC-CEEEEEECCH
Confidence            689999999999999999997 8999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.26  E-value=0.011  Score=43.76  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      +.|||+|.-|+.+|.+|++.+ .+|.++.+.+..
T Consensus         3 I~IiGaG~iG~~~a~~L~~~G-~~V~~~~r~~~~   35 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCKQG-HEVQGWLRVPQP   35 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CEEEEECSSCCS
T ss_pred             EEEECcCHHHHHHHHHHHHCC-CceEEEEcCHHH
Confidence            689999999999999999987 799999998753

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=95.20  E-value=0.012  Score=41.77  Aligned_cols=35  Identities=23%  Similarity=0.150  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSE---NPNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae---~~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|..|+-+|.-|++   .+ .+|.++|+++..
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g-~~Vtli~~~~~i   56 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARG-GQVDLAYRGDMI   56 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTT-CEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccc-cccceecccccc
Confidence            358999999999999976554   44 799999999764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.03  E-value=0.012  Score=42.58  Aligned_cols=32  Identities=28%  Similarity=0.506  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+|.|.-|..+|.+|.+.+ ..|++||.-++
T Consensus         3 IvI~G~G~~G~~la~~L~~~g-~~v~vid~d~~   34 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSEKG-HDIVLIDIDKD   34 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHHCC-CCcceecCChh
Confidence            689999999999999999987 89999998654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.013  Score=43.00  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcC---CCCeEEEeecCCCC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSEN---PNWKVLLLEAGGHE   95 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~---~~~~VLlLEaG~~~   95 (224)
                      -.++|||+|+.|+-+|..|++.   .+.+|.+||+++..
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            4699999999999999999752   24799999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.19  E-value=0.052  Score=39.97  Aligned_cols=34  Identities=9%  Similarity=0.100  Sum_probs=29.4

Q ss_pred             cEEEE--CCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          61 DFIVV--GGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        61 D~IVV--GsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      .+|||  |+|..|+-+|..|++.| .+|.|+|+.+..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G-~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAG-HEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTT-CEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHHcC-CeEEEEecCCcc
Confidence            45555  99999999999999998 899999998753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.25  E-value=0.098  Score=35.40  Aligned_cols=33  Identities=9%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -+.|+|.|-+|..+|..|.+.+ .+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g-~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARG-VTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTT-CCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHHCC-CEEEEeeCCcC
Confidence            4799999999999999999987 89999987654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.08  Score=40.94  Aligned_cols=32  Identities=25%  Similarity=0.421  Sum_probs=28.8

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +.|||+|..|.-+|..++..| ++|.++|.-+.
T Consensus         7 vaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~~   38 (192)
T d1f0ya2           7 VTVIGGGLMGAGIAQVAAATG-HTVVLVDQTED   38 (192)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CEEEEECSCHH
T ss_pred             EEEECcCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence            679999999999999999987 99999987653

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.72  E-value=0.066  Score=41.38  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      -.+.|||+|.-|.++|..|++++ .+|.|..+-
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g-~~V~l~~r~   39 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKC-REVCVWHMN   39 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTE-EEEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcC-CeEEEEEec
Confidence            35899999999999999999987 689998754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.62  E-value=0.1  Score=38.13  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=27.1

Q ss_pred             EEEE-CCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVV-GGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVV-GsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|| |+|.-|..+|.+|+++| .+|.|.-+.+
T Consensus         3 i~vigGaG~iG~alA~~la~~G-~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLATLG-HEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTT-CEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCH
Confidence            4677 78999999999999998 8999997764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.56  E-value=0.1  Score=38.90  Aligned_cols=34  Identities=24%  Similarity=0.272  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      .++|||||..|+=+|..|.+.+..+|.++++-..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            5999999999999999999887678999988654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=90.73  E-value=0.092  Score=40.26  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +.|||+|..|.-+|..++..| ++|.++|.-+
T Consensus         7 vaViGaG~mG~~iA~~~a~~G-~~V~l~D~~~   37 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSASKG-TPILMKDINE   37 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHHTT-CCEEEECSSH
T ss_pred             EEEECcCHHHHHHHHHHHhCC-CeEEEEECCH
Confidence            789999999999999999987 8999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.15  Score=37.19  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      +||+|.|.-|..+|.+|.+.+ .+|.+||.-++
T Consensus         6 iII~G~g~~g~~l~~~L~~~~-~~v~vId~d~~   37 (153)
T d1id1a_           6 FIVCGHSILAINTILQLNQRG-QNVTVISNLPE   37 (153)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CCEEEEECCCH
T ss_pred             EEEECCCHHHHHHHHHHHHcC-CCEEEEeccch
Confidence            899999999999999999986 89999997653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.01  E-value=0.12  Score=39.31  Aligned_cols=30  Identities=20%  Similarity=0.363  Sum_probs=26.4

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +.|||+|.-|.++|..|++++ .+|.|..+.
T Consensus         3 I~ViGaG~~GtalA~~la~~g-~~V~l~~r~   32 (180)
T d1txga2           3 VSILGAGAMGSALSVPLVDNG-NEVRIWGTE   32 (180)
T ss_dssp             EEEESCCHHHHHHHHHHHHHC-CEEEEECCG
T ss_pred             EEEECCCHHHHHHHHHHHHCC-CEEEEEEec
Confidence            679999999999999999987 799987553

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.65  E-value=0.23  Score=34.30  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=25.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .=+++|||+|.+|.-+|..|++.. .+|.++-+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~a-k~v~~~~~   63 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVA-KHPIYQSL   63 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTS-CSSEEEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhc-CEEEEEEe
Confidence            468999999999999999999976 45444433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.99  E-value=0.17  Score=38.99  Aligned_cols=30  Identities=27%  Similarity=0.355  Sum_probs=27.4

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAG   92 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG   92 (224)
                      +.|||.|.-|+++|..||+.+ .+|..+|.-
T Consensus         3 I~ViGlG~vGl~~a~~la~~g-~~V~g~D~n   32 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARG-HEVIGVDVS   32 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTT-CEEEEECSC
T ss_pred             EEEECCCHhHHHHHHHHHhCC-CcEEEEeCC
Confidence            579999999999999999987 799999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=88.58  E-value=0.24  Score=36.49  Aligned_cols=31  Identities=23%  Similarity=0.200  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          62 FIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        62 ~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      +-|||.|.-|..+|.+|.+++ .+|.+.++-+
T Consensus         3 I~iIG~G~mG~~lA~~l~~~g-~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRRG-HYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHHCC-CEEEEEECCc
Confidence            468999999999999999987 8999887653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.60  E-value=0.31  Score=33.88  Aligned_cols=32  Identities=25%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeec
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEA   91 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEa   91 (224)
                      .--++|||+|..|..-|.+|.+.+ .+|.++.-
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~g-a~v~v~~~   43 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAG-ARLTVNAL   43 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-BEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CeEEEEec
Confidence            457899999999999999999987 88888753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.48  E-value=0.2  Score=36.55  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=27.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLL   89 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlL   89 (224)
                      .--++|||+|..|.--|..|.+.+ .+|.|+
T Consensus        13 gkrvLViGgG~va~~ka~~Ll~~G-A~VtVv   42 (150)
T d1kyqa1          13 DKRILLIGGGEVGLTRLYKLMPTG-CKLTLV   42 (150)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGT-CEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEE
Confidence            456899999999999999999987 899999

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.10  E-value=0.33  Score=35.21  Aligned_cols=33  Identities=21%  Similarity=0.445  Sum_probs=29.1

Q ss_pred             cEEEEC-CChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          61 DFIVVG-GGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        61 D~IVVG-sG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      -+.||| .|.-|..+|.+|.+++ +.|.+.++-..
T Consensus        11 kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~   44 (152)
T d2pv7a2          11 KIVIVGGYGKLGGLFARYLRASG-YPISILDREDW   44 (152)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCG
T ss_pred             eEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccc
Confidence            578999 7999999999999987 89999987654

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=0.44  Score=34.00  Aligned_cols=37  Identities=30%  Similarity=0.268  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..=+++|||+|.+.+-.|..|++-. .+|.||-+++..
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a-~~V~li~r~~~~   65 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIV-EHVTLLEFAPEM   65 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTB-SEEEEECSSSSC
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccC-CceEEEeccccc
Confidence            3468999999999999999999975 799999999753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.85  E-value=0.25  Score=35.44  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=25.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCe-EEEee
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWK-VLLLE   90 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~-VLlLE   90 (224)
                      .++-++|+|+|.+|..++..|..+.+++ |..++
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD   35 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFD   35 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence            3578999999999999998877655566 34444

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.17  E-value=0.56  Score=33.75  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..=|++|||+|-+.+--|..|++.- .+|.||-++...
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a-~~V~li~r~~~~   69 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDAF   69 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-SEEEEECSSSSC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCC-CcEEEEEecccc
Confidence            4569999999999999999999976 799999998753

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.68  E-value=0.73  Score=32.69  Aligned_cols=37  Identities=24%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGHE   95 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~~   95 (224)
                      ..=+++|||+|-++.-.|.-|++-. .+|.+|-++...
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a-~~V~li~r~~~~   62 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIA-SEVHLIHRRDGF   62 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTS-SEEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcC-CcEEEEeecccc
Confidence            3469999999999999999999976 799999998753

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.73  E-value=0.13  Score=37.77  Aligned_cols=31  Identities=19%  Similarity=0.160  Sum_probs=24.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEee
Q psy7388          60 YDFIVVGGGSAGNVVANRLSENPNWKVLLLE   90 (224)
Q Consensus        60 yD~IVVGsG~aG~v~A~rLae~~~~~VLlLE   90 (224)
                      -.+||||+|..|+-+|..|++.+...+.+++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~~~~~~   60 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGESTSQNIA   60 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCGGGCHH
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCccceeHh
Confidence            4789999999999999999998744444443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.09  E-value=0.98  Score=35.69  Aligned_cols=37  Identities=24%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ++--+|+.|+|+||.-+|..|.+.+-.++.++++-+.
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GL   61 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGI   61 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeE
Confidence            3567999999999999999998877678999998753

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=81.10  E-value=0.62  Score=36.52  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCCC
Q psy7388          58 MEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGGH   94 (224)
Q Consensus        58 ~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~~   94 (224)
                      ..--++|||.|.-|+.+|..|+..|=.++.|++...-
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~V   65 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTV   65 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCccc
Confidence            4578999999999999999999988668888887653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=80.30  E-value=0.83  Score=33.67  Aligned_cols=37  Identities=14%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          57 LMEYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        57 ~~~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .+..-+.|||+|.-|..+|..|+.++-..++|++.-+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            3567899999999999999999987744788887654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=80.14  E-value=0.92  Score=33.55  Aligned_cols=34  Identities=18%  Similarity=0.162  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeecCC
Q psy7388          59 EYDFIVVGGGSAGNVVANRLSENPNWKVLLLEAGG   93 (224)
Q Consensus        59 ~yD~IVVGsG~aG~v~A~rLae~~~~~VLlLEaG~   93 (224)
                      .-.++|+|+|-++-.++..|.+.+ .+|.++-|-.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g-~~i~I~nRt~   51 (170)
T d1nyta1          18 GLRILLIGAGGASRGVLLPLLSLD-CAVTITNRTV   51 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSH
T ss_pred             CCEEEEECCcHHHHHHHHHhcccc-eEEEeccchH
Confidence            356899999999999999999987 6888886643