Psyllid ID: psy7414

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
MFLRCIVKPVFSRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHccccccccccEEEEcccccEEcccccccccccccccccccccccEEEcccEEEcccccHHHHHHHHccccEEEEEcccccccccccccccccEEcccEEEEcccccccccccHHHHHHHHHHHcccccEEEEcccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEEccEEEEEEEEcccccccccc
cccHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccEEEcccccccEEcHHHHHHccccccccccccccEEEEccccEEEccccHHHHHHHHcccccEEEEccEEEcccccccccccEEEEEEEEEEccccccccccHHHHHHHHHHHHccccccEEEcccccccccccccccEEccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccEEEEEEEcccEEEEEccccEcHHHHcc
mflrcivkpvfsrhtscyLNLLRFSTHAVKNDVEKATltingktyhtddytnvTPKILSYLNknlhnkkyhplcMLKQRIINFFYsefvgkkgtpifsiydsispvvtvEENFDSLLVAKdhvsrskndcyyvnREYLLRAHTTAHQSELIRMGLdnfvvfgdvyrrdqidsthfpvfhqadgvhllnrdqvsrgdigvgtslKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIfeqggvhtdekqarHTLDATKVMEQKLKNSLVKLAKIlfgddiqmrwiseyfpfthpsweleILLNDKWVEILGCGVIRHEILDR
mflrcivkpvfsrhtscYLNLLRFSTHAVKNDVEKAtltingktyhtddytnvTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLvakdhvsrskndcYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR
MFLRCIVKPVFSRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR
*FLRCIVKPVFSRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTD*****HTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEI***
******VKPVFSRHTSCYLN***********************TYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD*
MFLRCIVKPVFSRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR
MFLRCIVKPVFSRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFLRCIVKPVFSRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query320 2.2.26 [Sep-21-2011]
O16129 453 Probable phenylalanine--t yes N/A 0.906 0.640 0.482 1e-83
O95363 451 Phenylalanine--tRNA ligas yes N/A 0.768 0.545 0.446 2e-70
Q6AYQ3 472 Phenylalanine--tRNA ligas yes N/A 0.781 0.529 0.443 7e-70
Q99M01 451 Phenylalanine--tRNA ligas yes N/A 0.821 0.583 0.420 5e-69
Q94K73 429 Phenylalanine--tRNA ligas yes N/A 0.706 0.526 0.369 7e-46
Q86A68 454 Phenylalanine--tRNA ligas yes N/A 0.715 0.504 0.380 5e-45
P08425 469 Phenylalanine--tRNA ligas yes N/A 0.831 0.567 0.346 5e-42
O74952 429 Phenylalanine--tRNA ligas yes N/A 0.746 0.557 0.351 7e-39
Q8EUJ8341 Phenylalanine--tRNA ligas yes N/A 0.328 0.307 0.398 6e-11
B5FDX4327 Phenylalanine--tRNA ligas yes N/A 0.365 0.357 0.317 2e-10
>sp|O16129|SYFM_DROME Probable phenylalanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster GN=Aats-phe PE=2 SV=3 Back     alignment and function desciption
 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/309 (48%), Positives = 202/309 (65%), Gaps = 19/309 (6%)

Query: 12  SRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYH 71
           +RH       L  S    K+      L ++G TY TD +TNVTPKILSY+  N H +  H
Sbjct: 10  ARHWLKSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILSYVGANKHLQTDH 69

Query: 72  PLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCY 131
           PL +++QRI+N+FY  +  ++G P+FS+YD ++PVVTV++NFD+LL+  DHVSR K+DCY
Sbjct: 70  PLSIIRQRIVNYFYGAYRNQRGNPLFSVYDQMNPVVTVQQNFDNLLIPADHVSRQKSDCY 129

Query: 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQ 191
           Y+N+++LLRAHTTAHQ ELI  GLDNF+V G+VYRRD+IDSTH+PVFHQAD V L+ +D+
Sbjct: 130 YINQQHLLRAHTTAHQVELISGGLDNFLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDK 189

Query: 192 VSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHT 251
           +   + G       + +F  T             S ++    +I          KQ  HT
Sbjct: 190 LFERNPG-------LELFEET------------WSGTLADPKLILPSSKFMDQTKQPCHT 230

Query: 252 LDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCG 311
           L+A K+ME ++K+ LV L K LFG  I+ RW+  YFPFT PSWELEI   D W+E+LGCG
Sbjct: 231 LEAVKLMEHEMKHVLVGLTKDLFGPRIKYRWVDTYFPFTQPSWELEIYFKDNWLEVLGCG 290

Query: 312 VIRHEILDR 320
           ++RHEIL R
Sbjct: 291 IMRHEILQR 299
Catalyzes direct attachment of p-Tyr (Tyr) to tRNAPhe. Permits also, with a lower efficiency, the attachment of m-Tyr to tRNAPhe, thereby opening the way for delivery of the misacylated tRNA to the ribosome and incorporation of ROS-damaged amino acid into proteins.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0
>sp|O95363|SYFM_HUMAN Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=FARS2 PE=1 SV=1 Back     alignment and function description
>sp|Q6AYQ3|SYFM_RAT Phenylalanine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Fars2 PE=2 SV=1 Back     alignment and function description
>sp|Q99M01|SYFM_MOUSE Phenylalanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Fars2 PE=2 SV=1 Back     alignment and function description
>sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1 Back     alignment and function description
>sp|Q86A68|SYFM_DICDI Phenylalanine--tRNA ligase, mitochondrial OS=Dictyostelium discoideum GN=mpheS PE=3 SV=1 Back     alignment and function description
>sp|P08425|SYFM_YEAST Phenylalanine--tRNA ligase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MSF1 PE=1 SV=3 Back     alignment and function description
>sp|O74952|SYFM_SCHPO Phenylalanine--tRNA ligase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfs1 PE=3 SV=1 Back     alignment and function description
>sp|Q8EUJ8|SYFA_MYCPE Phenylalanine--tRNA ligase alpha subunit OS=Mycoplasma penetrans (strain HF-2) GN=pheS PE=3 SV=1 Back     alignment and function description
>sp|B5FDX4|SYFA_VIBFM Phenylalanine--tRNA ligase alpha subunit OS=Vibrio fischeri (strain MJ11) GN=pheS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
322788727 435 hypothetical protein SINV_13398 [Solenop 0.825 0.606 0.533 2e-88
332030949 449 Putative phenylalanyl-tRNA synthetase, m 0.9 0.641 0.504 8e-87
383861466 431 PREDICTED: probable phenylalanine--tRNA 0.85 0.631 0.496 1e-83
156550087 438 PREDICTED: probable phenylalanyl-tRNA sy 0.840 0.614 0.503 4e-83
193669518 438 PREDICTED: phenylalanyl-tRNA synthetase, 0.840 0.614 0.511 1e-82
194883220 453 GG20415 [Drosophila erecta] gi|190658888 0.906 0.640 0.491 1e-82
340712687 435 PREDICTED: probable phenylalanyl-tRNA sy 0.878 0.645 0.485 2e-82
195484841 453 GE12575 [Drosophila yakuba] gi|194176943 0.906 0.640 0.491 2e-82
194757788 462 GF13723 [Drosophila ananassae] gi|190622 0.862 0.597 0.501 3e-82
340712689420 PREDICTED: probable phenylalanyl-tRNA sy 0.809 0.616 0.510 4e-82
>gi|322788727|gb|EFZ14320.1| hypothetical protein SINV_13398 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 158/296 (53%), Positives = 213/296 (71%), Gaps = 32/296 (10%)

Query: 26  THAVKNDVEKAT-LTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFF 84
           T +V  +V K+  L + G+ Y TDD+TN+TP I++ L +NLH ++YHPL +L+QRI+N+F
Sbjct: 21  TVSVATNVNKSNELVLQGQKYVTDDWTNITPSIIAKLGRNLHIQQYHPLSLLRQRIVNYF 80

Query: 85  YSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTT 144
           Y +F  K GTP FSIYD+I P+VTV +NFDSLLV KDH SR K DCY+VN++ LLRAHTT
Sbjct: 81  YGQFRSKSGTPSFSIYDNICPIVTVAQNFDSLLVPKDHPSRKKTDCYFVNQDTLLRAHTT 140

Query: 145 AHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLK 204
           AHQ+ELI MGL+NF+V GDVYRRD+IDSTH+P+FHQ D V L                  
Sbjct: 141 AHQAELISMGLNNFLVIGDVYRRDEIDSTHYPIFHQVDAVRLR----------------- 183

Query: 205 IMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKN 264
                  TSQE F+      +++S  +++ +FE  G  + EKQA H+L+A KVMEQ+LK+
Sbjct: 184 -------TSQEIFH-----NVNDS--ESLKLFEHRGTESVEKQACHSLEAVKVMEQELKS 229

Query: 265 SLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320
           +L+ LA+ +FG D+Q RW+ +YFPFTHPSWELEIL ND W+EI+GCG++R EI+ +
Sbjct: 230 TLISLAQAIFGKDVQCRWVEQYFPFTHPSWELEILYNDNWLEIVGCGIMRQEIVQK 285

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332030949|gb|EGI70575.1| Putative phenylalanyl-tRNA synthetase, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383861466|ref|XP_003706207.1| PREDICTED: probable phenylalanine--tRNA ligase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|156550087|ref|XP_001605577.1| PREDICTED: probable phenylalanyl-tRNA synthetase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|193669518|ref|XP_001943508.1| PREDICTED: phenylalanyl-tRNA synthetase, mitochondrial-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|194883220|ref|XP_001975701.1| GG20415 [Drosophila erecta] gi|190658888|gb|EDV56101.1| GG20415 [Drosophila erecta] Back     alignment and taxonomy information
>gi|340712687|ref|XP_003394887.1| PREDICTED: probable phenylalanyl-tRNA synthetase, mitochondrial-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|195484841|ref|XP_002090842.1| GE12575 [Drosophila yakuba] gi|194176943|gb|EDW90554.1| GE12575 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194757788|ref|XP_001961144.1| GF13723 [Drosophila ananassae] gi|190622442|gb|EDV37966.1| GF13723 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|340712689|ref|XP_003394888.1| PREDICTED: probable phenylalanyl-tRNA synthetase, mitochondrial-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query320
FB|FBgn0020766 453 Aats-phe "Phenylalanyl-tRNA sy 0.587 0.415 0.531 1.4e-78
ZFIN|ZDB-GENE-070928-38 465 fars2 "phenylalanyl-tRNA synth 0.584 0.402 0.481 2.3e-72
UNIPROTKB|E2RK98 452 FARS2 "Uncharacterized protein 0.509 0.360 0.542 1.1e-70
UNIPROTKB|Q08D87 446 FARS2 "Uncharacterized protein 0.509 0.365 0.542 2.3e-70
UNIPROTKB|O95363 451 FARS2 "Phenylalanine--tRNA lig 0.509 0.361 0.530 3.7e-70
RGD|1309416 472 Fars2 "phenylalanyl-tRNA synth 0.521 0.353 0.529 7.7e-70
MGI|MGI:1917205 451 Fars2 "phenylalanine-tRNA synt 0.528 0.374 0.511 6.8e-69
WB|WBGene00013361 458 fars-2 [Caenorhabditis elegans 0.584 0.408 0.396 5.4e-59
UNIPROTKB|E1BW09200 FARS2 "Uncharacterized protein 0.478 0.765 0.588 1.7e-50
TAIR|locus:2085455429 AT3G58140 [Arabidopsis thalian 0.409 0.305 0.510 4.2e-49
FB|FBgn0020766 Aats-phe "Phenylalanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 554 (200.1 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 100/188 (53%), Positives = 138/188 (73%)

Query:    12 SRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYH 71
             +RH       L  S    K+      L ++G TY TD +TNVTPKILSY+  N H +  H
Sbjct:    10 ARHWLKSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILSYVGANKHLQTDH 69

Query:    72 PLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCY 131
             PL +++QRI+N+FY  +  ++G P+FS+YD ++PVVTV++NFD+LL+  DHVSR K+DCY
Sbjct:    70 PLSIIRQRIVNYFYGAYRNQRGNPLFSVYDQMNPVVTVQQNFDNLLIPADHVSRQKSDCY 129

Query:   132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQ 191
             Y+N+++LLRAHTTAHQ ELI  GLDNF+V G+VYRRD+IDSTH+PVFHQAD V L+ +D+
Sbjct:   130 YINQQHLLRAHTTAHQVELISGGLDNFLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDK 189

Query:   192 VSRGDIGV 199
             +   + G+
Sbjct:   190 LFERNPGL 197
GO:0005739 "mitochondrion" evidence=ISS
GO:0006432 "phenylalanyl-tRNA aminoacylation" evidence=ISS
GO:0004826 "phenylalanine-tRNA ligase activity" evidence=ISS;NAS
GO:0000049 "tRNA binding" evidence=IEA
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0008033 "tRNA processing" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
ZFIN|ZDB-GENE-070928-38 fars2 "phenylalanyl-tRNA synthetase 2, mitochondrial" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RK98 FARS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q08D87 FARS2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O95363 FARS2 "Phenylalanine--tRNA ligase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1309416 Fars2 "phenylalanyl-tRNA synthetase 2, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1917205 Fars2 "phenylalanine-tRNA synthetase 2 (mitochondrial)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00013361 fars-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW09 FARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2085455 AT3G58140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O16129SYFM_DROME6, ., 1, ., 1, ., 2, 00.48220.90620.6401yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer6.1.1.20LOW CONFIDENCE prediction!
3rd Layer6.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
TIGR00469 460 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase 1e-85
PLN02788 402 PLN02788, PLN02788, phenylalanine-tRNA synthetase 4e-76
cd00496218 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synth 2e-36
COG0016335 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha 5e-23
TIGR00468293 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alp 3e-19
cd00496218 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synth 2e-18
PRK00488339 PRK00488, pheS, phenylalanyl-tRNA synthetase subun 7e-17
pfam01409245 pfam01409, tRNA-synt_2d, tRNA synthetases class II 9e-16
COG0016335 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha 7e-14
pfam01409245 pfam01409, tRNA-synt_2d, tRNA synthetases class II 6e-11
PRK00488339 PRK00488, pheS, phenylalanyl-tRNA synthetase subun 1e-09
TIGR00468293 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alp 2e-07
PRK04172489 PRK04172, pheS, phenylalanyl-tRNA synthetase subun 1e-05
PRK04172489 PRK04172, pheS, phenylalanyl-tRNA synthetase subun 2e-05
>gnl|CDD|129561 TIGR00469, pheS_mito, phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information 
 Score =  264 bits (676), Expect = 1e-85
 Identities = 119/309 (38%), Positives = 166/309 (53%), Gaps = 37/309 (11%)

Query: 38  LTINGKTYHTDDYT-NVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPI 96
           L ING  Y TD  T NVT KI+   + N H K+ HPL +++  I   F      ++G P+
Sbjct: 8   LEINGIKYATDGQTTNVTDKIIKLTDANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPL 67

Query: 97  FSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD 156
           F I+D+  PVVT  ENFD+L    DH  R K+DCYY+N ++LLRAHT+AH+ E  + GLD
Sbjct: 68  FKIFDNFKPVVTTMENFDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELECFQGGLD 127

Query: 157 N-------FVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIF 209
           +       F++  DVYRRD+ID TH+PVFHQADG  +    + ++ D+       I    
Sbjct: 128 DSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAAIR---KRTKADLFEKEPGYIEKFE 184

Query: 210 TPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDE---KQARHTLDATKVMEQKLKNSL 266
                    + K N          +I +   +   E   KQ   +  A  + E +LK+S+
Sbjct: 185 EDIRGTEADLNKENV--------KIILDDDSIPLKENNPKQEYASDLAVDLCEHELKHSI 236

Query: 267 VKLAKILFGDDI---------------QMRWISEYFPFTHPSWELEILLNDKWVEILGCG 311
             + K LFG  I               ++RWI  YFPFT PSWE+EI   D+W+E+ GCG
Sbjct: 237 EGITKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPFTAPSWEIEIWFKDEWLELCGCG 296

Query: 312 VIRHEILDR 320
           +IRH+IL R
Sbjct: 297 IIRHDILLR 305

Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This model models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species [Protein synthesis, tRNA aminoacylation]. Length = 460
>gnl|CDD|215422 PLN02788, PLN02788, phenylalanine-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>gnl|CDD|238277 cd00496, PheRS_alpha_core, Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F) Back     alignment and domain information
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|216483 pfam01409, tRNA-synt_2d, tRNA synthetases class II core domain (F) Back     alignment and domain information
>gnl|CDD|234780 PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|232988 TIGR00468, pheS, phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 320
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 100.0
KOG2783|consensus 436 100.0
PLN02788 402 phenylalanine-tRNA synthetase 100.0
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 100.0
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 100.0
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 100.0
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 100.0
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 100.0
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 100.0
KOG2784|consensus483 100.0
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 100.0
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 99.95
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 99.79
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 99.4
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.08
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 99.06
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.02
PRK06253 529 O-phosphoseryl-tRNA synthetase; Reviewed 98.31
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 98.17
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 98.16
PRK09350306 poxB regulator PoxA; Provisional 97.87
PTZ00417585 lysine-tRNA ligase; Provisional 97.87
TIGR00471551 pheT_arch phenylalanyl-tRNA synthetase, beta subun 97.66
PRK12445505 lysyl-tRNA synthetase; Reviewed 97.41
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 97.35
PLN02502553 lysyl-tRNA synthetase 97.35
PRK06462335 asparagine synthetase A; Reviewed 97.32
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 97.23
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 97.19
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 97.17
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 97.14
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 97.13
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 97.08
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 97.03
PTZ00385 659 lysyl-tRNA synthetase; Provisional 97.01
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 96.97
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 96.96
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 96.82
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 96.67
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 96.6
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 96.51
COG2024 536 Phenylalanyl-tRNA synthetase alpha subunit (archae 96.31
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 96.27
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 96.19
PLN02903 652 aminoacyl-tRNA ligase 96.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 95.92
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 95.76
PLN02603565 asparaginyl-tRNA synthetase 95.69
PLN02265597 probable phenylalanyl-tRNA synthetase beta chain 95.37
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 95.2
KOG1885|consensus 560 95.17
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 95.01
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 94.51
PTZ00401 550 aspartyl-tRNA synthetase; Provisional 94.15
PRK00960517 seryl-tRNA synthetase; Provisional 94.04
TIGR00414418 serS seryl-tRNA synthetase. This model represents 93.79
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 93.56
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 93.42
PLN02850530 aspartate-tRNA ligase 92.79
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 92.58
PRK05431425 seryl-tRNA synthetase; Provisional 91.94
PLN02532633 asparagine-tRNA synthetase 91.04
PLN02678448 seryl-tRNA synthetase 90.93
PLN02221572 asparaginyl-tRNA synthetase 90.61
PTZ00425586 asparagine-tRNA ligase; Provisional 88.27
COG0072 650 PheT Phenylalanyl-tRNA synthetase beta subunit [Tr 85.25
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 85.16
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 85.05
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 84.83
PRK04173 456 glycyl-tRNA synthetase; Provisional 83.53
TIGR00443314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 82.49
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 81.67
PLN02972 763 Histidyl-tRNA synthetase 81.23
PLN02320502 seryl-tRNA synthetase 81.19
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 80.08
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information 
Probab=100.00  E-value=1.8e-88  Score=674.43  Aligned_cols=271  Identities=43%  Similarity=0.732  Sum_probs=234.1

Q ss_pred             CCceEEECCeeecCCCCC-CCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceec
Q psy7414          34 EKATLTINGKTYHTDDYT-NVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEEN  112 (320)
Q Consensus        34 ~~~~i~~~g~~y~~d~~t-Nvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~N  112 (320)
                      .|.+++++|++|++|+|| ||||+|++++||++|.+..|||++++++|+++|.+++.+..|+|+|+++++++||||+++|
T Consensus         4 ~~~~~~~~~~~~~~d~~~~n~~~~i~~~~~r~~~~~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~N   83 (460)
T TIGR00469         4 KPPHLEINGIKYATDGQTTNVTDKIIKLTDANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMEN   83 (460)
T ss_pred             CCCeEEECCeeccCCcccCCCChHHHHhhccCccCCCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhh
Confidence            367899999999999999 9999999999999999999999999999999998876666789999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCCC-------eEEEecccccCCCcCCCCCCcceeeeEEE
Q psy7414         113 FDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD-------NFVVFGDVYRRDQIDSTHFPVFHQADGVH  185 (320)
Q Consensus       113 FD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~~-------~~l~~GdVYRRDeID~tHyPvFHQmEG~~  185 (320)
                      ||+||||+|||||+++||||||+++||||||||||+++|+++.+       +|+++|||||||+||+|||||||||||++
T Consensus        84 FD~Ln~P~dHPaR~~~DT~Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~  163 (460)
T TIGR00469        84 FDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAA  163 (460)
T ss_pred             hhhcCCCCCCcccCcccceEecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEE
Confidence            99999999999999999999999999999999999999998753       49999999999999999999999999999


Q ss_pred             Eeeccc--cccCccCcccccceecccCCCchhhhhhhh------ccccccccCcceeeeecCCCCCcccccccchhHHHH
Q psy7414         186 LLNRDQ--VSRGDIGVGTSLKIMTIFTPTSQEYFYIKK------CNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKV  257 (320)
Q Consensus       186 v~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~  257 (320)
                      ||.+.+  ++++..  +.+++++       ++.+.+++      .++.++|++..+.       ..+++|++||.+++++
T Consensus       164 v~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~q~~~~~~~~~~  227 (460)
T TIGR00469       164 IRKRTKADLFEKEP--GYIEKFE-------EDIRGTEADLNKENVKIILDDDSIPLK-------ENNPKQEYASDLAVDL  227 (460)
T ss_pred             Eecccccccccccc--chhhhhh-------hhhhhccccccccCcceeccCcccccc-------cccchhhhccHHHHHH
Confidence            996442  221100  1111111       33333332      2344444332222       5788999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCc---------------cEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414         258 MEQKLKNSLVKLAKILFGDDI---------------QMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR  320 (320)
Q Consensus       258 v~~~LK~tLe~lv~~lFg~~~---------------~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~  320 (320)
                      +++|||++|+.|+++|||+++               ++||+|+|||||+||+|+||+|+|+||||||||||+|+||++
T Consensus       228 ~~~~LK~~L~~~~~~lFg~~~~~~~~~~~~~~~~~~~~r~~ps~fPftePs~evdi~~~g~WiEi~gcG~v~p~vl~~  305 (460)
T TIGR00469       228 CEHELKHSIEGITKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPFTAPSWEIEIWFKDEWLELCGCGIIRHDILLR  305 (460)
T ss_pred             HHHHHHHHHHHHHHHHhchhhhhhccccccccCccceEEEEeccCCCCCcceEEEEEECCeeEEEeeeccCcHHHHHH
Confidence            999999999999999999766               999999999999999999999999999999999999999864

Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
>KOG2783|consensus Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>KOG2784|consensus Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>KOG1885|consensus Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
3cmq_A 415 Crystal Structure Of Human Mitochondrial Phenylalan 2e-71
3pco_A327 Crystal Structure Of E. Coli Phenylalanine-Trna Syn 8e-09
2rhq_A294 Phers From Staphylococcus Haemolyticus- Rational Pr 4e-07
2rhq_A294 Phers From Staphylococcus Haemolyticus- Rational Pr 5e-06
1pys_A350 Phenylalanyl-Trna Synthetase From Thermus Thermophi 6e-06
1pys_A350 Phenylalanyl-Trna Synthetase From Thermus Thermophi 7e-05
2akw_A266 Crystal Structure Of T.thermophilus Phenylalanyl-tr 8e-06
2akw_A266 Crystal Structure Of T.thermophilus Phenylalanyl-tr 5e-05
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine Trna Synthetase Length = 415 Back     alignment and structure 
Iteration: 1

 Score =  265 bits (678), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/284 (43%), Positives = 192/284 (67%), Gaps = 32/284 (11%)
Query: 36  ATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTP 95
           + + + GK+Y  DD++N+T K+L+ + +NLHN+++HPL ++K+R+   FY ++VG+ GTP
Sbjct: 13  SVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTP 72
Query: 96  IFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGL 155
           +FS+YD++SPVVT  +NFDSLL+  DH SR K D YY+NR ++LRAHT+AHQ +L+  GL
Sbjct: 73  LFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGL 132
Query: 156 DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQE 215
           D F+V GDVYRRDQIDS H+P+FHQ + V L ++ ++  G                    
Sbjct: 133 DAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAG-------------------- 172
Query: 216 YFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFG 275
              IK         G+++ +FEQ    +  KQ  HT++A K++E  LK +L +L   LFG
Sbjct: 173 ---IKD--------GESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFG 220
Query: 276 DDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
           D++++RW+  YFPFTHPS+E+EI  + +W+E+LGCGV+  ++++
Sbjct: 221 DELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN 264
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase Complexed With Phenylalanine And Amp Length = 327 Back     alignment and structure
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 294 Back     alignment and structure
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein Engineering And Inhibitor Studies Length = 294 Back     alignment and structure
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 350 Back     alignment and structure
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus Length = 350 Back     alignment and structure
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna Synthetase Complexed With P-cl-phenylalanine Length = 266 Back     alignment and structure
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna Synthetase Complexed With P-cl-phenylalanine Length = 266 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query320
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 5e-92
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 3e-15
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 2e-09
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 8e-14
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 6e-12
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 1e-13
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 7e-12
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 4e-13
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 5e-12
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 6e-13
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 2e-11
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 1e-12
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 2e-11
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 3e-12
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 2e-10
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 8e-12
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 5e-08
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 1e-11
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 5e-11
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 9e-11
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 4e-06
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Length = 415 Back     alignment and structure
 Score =  279 bits (714), Expect = 5e-92
 Identities = 122/295 (41%), Positives = 191/295 (64%), Gaps = 32/295 (10%)

Query: 25  STHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFF 84
           +          + + + GK+Y  DD++N+T K+L+ + +NLHN+++HPL ++K+R+   F
Sbjct: 2   AAECATQRAPGSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHF 61

Query: 85  YSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTT 144
           Y ++VG+ GTP+FS+YD++SPVVT  +NFDSLL+  DH SR K D YY+NR ++LRAHT+
Sbjct: 62  YKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTS 121

Query: 145 AHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLK 204
           AHQ +L+  GLD F+V GDVYRRDQIDS H+P+FHQ + V L ++ ++  G         
Sbjct: 122 AHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAG--------- 172

Query: 205 IMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKN 264
                                    G+++ +FEQ    +  KQ  HT++A K++E  LK 
Sbjct: 173 ----------------------IKDGESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQ 209

Query: 265 SLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
           +L +L   LFGD++++RW+  YFPFTHPS+E+EI  + +W+E+LGCGV+  ++++
Sbjct: 210 TLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN 264
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Length = 294 Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Length = 294 Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 701 Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 685 Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 685 Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 665 Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 665 Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 327 Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Length = 327 Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 648 Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Length = 648 Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Length = 534 Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Length = 534 Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 508 Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Length = 508 Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Length = 350 Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Length = 350 Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Length = 549 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 100.0
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 100.0
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 100.0
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 100.0
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 100.0
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.97
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.97
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.97
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.97
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 99.97
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 99.95
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 99.82
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.75
2rhq_B 795 Phenylalanyl-tRNA synthetase beta chain; heterotet 99.73
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.62
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 99.6
1b7y_B 785 Phers, protein (phenylalanyl-tRNA synthetase); enz 99.52
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 99.0
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 98.91
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 98.75
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 98.69
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 98.43
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 97.85
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 97.71
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 97.59
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.38
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 97.36
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.21
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 97.14
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 96.99
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 96.92
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 96.84
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 96.75
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 96.74
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 96.5
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 96.38
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 96.21
3pco_B 795 Phenylalanyl-tRNA synthetase, beta chain; aminoacy 95.85
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 95.4
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 94.77
1z7m_A344 ATP phosphoribosyltransferase regulatory subunit; 94.52
3ikl_A 459 DNA polymerase subunit gamma-2, mitochondrial; tra 93.79
3vbb_A522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 93.35
3rac_A373 Histidine-tRNA ligase; structural genomics, PSI-bi 93.12
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 92.8
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 92.38
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 91.48
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 91.4
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 91.31
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 91.12
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 90.55
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 89.48
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 89.12
3err_A536 Fusion protein of microtubule binding domain from 88.76
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 87.48
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 87.25
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 86.05
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 85.48
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 84.56
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 84.42
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 83.2
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
Probab=100.00  E-value=2.8e-67  Score=518.47  Aligned_cols=253  Identities=48%  Similarity=0.918  Sum_probs=227.0

Q ss_pred             CceEEECCeeecCCCCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccc
Q psy7414          35 KATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFD  114 (320)
Q Consensus        35 ~~~i~~~g~~y~~d~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD  114 (320)
                      +.+++++|++|++|+|+|||++|++++||+++.|+.|||++++++|+++|.+++.++.|+|+|+++++++||||.++|||
T Consensus        12 ~~~~~~~~~~~~~~~~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd   91 (415)
T 3cmq_A           12 GSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFD   91 (415)
T ss_dssp             CSEEEETTEEEECCSSCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTG
T ss_pred             CCcEEECCeeeccCccccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHH
Confidence            46799999999999999999999999999999999999999999999999887665668889999999899999999999


Q ss_pred             cCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEeecccccc
Q psy7414         115 SLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSR  194 (320)
Q Consensus       115 ~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~  194 (320)
                      +|++|+|||||+++||||||+.+||||||||||+++|+++.+++|++|||||||+||++|||+|||+||+++|..+..+.
T Consensus        92 ~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~  171 (415)
T 3cmq_A           92 SLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFA  171 (415)
T ss_dssp             GGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTT
T ss_pred             HhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceec
Confidence            99999999999999999999999999999999999999988899999999999999999999999999999996655432


Q ss_pred             CccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy7414         195 GDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILF  274 (320)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lF  274 (320)
                      ..++                 .              .++..+..+. .++++|.+|+.+++++...|||++|+.++..+|
T Consensus       172 ~~~~-----------------~--------------~~la~~~~g~-~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lf  219 (415)
T 3cmq_A          172 GIKD-----------------G--------------ESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLF  219 (415)
T ss_dssp             TSTT-----------------G--------------GGCCSBCCCC-CCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc-----------------c--------------ceEEEEEecC-cccccccccccccccccHHHHHHHHHHHHHHHc
Confidence            1100                 0              1122122111 346789999999999999999999999999999


Q ss_pred             CCCccEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414         275 GDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD  319 (320)
Q Consensus       275 g~~~~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~  319 (320)
                      |.+.++||+++|||||+||.|++|+++|+|||++|||++||+||+
T Consensus       220 g~~~~~~~~~~~~p~~hPgr~a~I~~~g~wlE~lG~G~lhP~Vl~  264 (415)
T 3cmq_A          220 GDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN  264 (415)
T ss_dssp             CTTCCEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred             CCCceEEEecCCCCCCCCceEEEEEECCeeEEEEEEEEeCHHHHH
Confidence            987789999999999999999999999999999999999999986
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 320
d1jjca_266 d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alph 7e-18
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Length = 266 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
species: Thermus thermophilus [TaxId: 274]

 Score = 79.7 bits (196), Expect = 7e-18
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 26/140 (18%)

Query: 63  KNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDH 122
            +L +   HP+ ++++ ++  F +          +   +    V +   NFD+L + + H
Sbjct: 9   ASLFSGGLHPITLMERELVEIFRALG--------YQAVEG-PEVESEFFNFDALNIPEHH 59

Query: 123 VSRSKNDCYYVNRE---------------YLLRAHTTAHQSELIRMGLD--NFVVFGDVY 165
            +R   D +++  E                LLR HT+  Q   +         VV G V+
Sbjct: 60  PARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVF 119

Query: 166 RRDQIDSTHFPVFHQADGVH 185
           R +Q D+TH  VFHQ +G+ 
Sbjct: 120 RFEQTDATHEAVFHQLEGLV 139

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query320
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 100.0
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 97.66
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 97.61
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 97.55
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 97.27
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 97.14
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 97.06
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 96.51
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 95.39
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 93.64
d1wu7a2327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 92.29
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 89.86
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 89.63
d1h4vb2324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 88.35
d1g5ha2290 The aaRS-like accessory subunit of mitochondrial p 86.14
d1qe0a2325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 84.47
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.2e-70  Score=513.36  Aligned_cols=186  Identities=30%  Similarity=0.562  Sum_probs=172.3

Q ss_pred             hccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccccc-
Q psy7414          58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNRE-  136 (320)
Q Consensus        58 ls~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~-  136 (320)
                      ++++|++++.|+.|||++++++|+++|.+     +|   |+++++ ++|||+++|||+|++|+|||||+++|||||+++ 
T Consensus         4 vtlPg~~~~~G~~HPl~~~~~~i~~if~~-----~G---F~~~~g-p~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~   74 (266)
T d1jjca_           4 VSLPGASLFSGGLHPITLMERELVEIFRA-----LG---YQAVEG-PEVESEFFNFDALNIPEHHPARDMWDTFWLTGEG   74 (266)
T ss_dssp             TTSCCCCCCCCBCCHHHHHHHHHHHHHHT-----TT---CEECCC-CSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSS
T ss_pred             eeCCCCCCCCCCCChHHHHHHHHHHHHHH-----cC---CeEeeC-CccccchhhhhcccCCcccchhcccceEEEeccc
Confidence            46889999999999999999999999974     35   999998 899999999999999999999999999999854 


Q ss_pred             --------------ccccccCchhhHHHHHcCCC--eEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcc
Q psy7414         137 --------------YLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVG  200 (320)
Q Consensus       137 --------------~lLRTHTSAhq~~~l~~~~~--~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~  200 (320)
                                    +||||||||||++.|.++.+  +++++|+|||||+||+||+|+||||||++++             
T Consensus        75 ~~~~~~~~~~~~~~~lLRTHTS~~q~r~~~~~~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd-------------  141 (266)
T d1jjca_          75 FRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVG-------------  141 (266)
T ss_dssp             CCEECTTSCEECSCEEECSSSTHHHHHHHHHSCSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEE-------------
T ss_pred             ccccCcccccchhhhhhccCCcHHHHHHHhccCCCceEEecccceecCCCCCcccccceeeeeeecc-------------
Confidence                          69999999999999988764  8999999999999999999999999999994             


Q ss_pred             cccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccE
Q psy7414         201 TSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQM  280 (320)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~  280 (320)
                                                    ++++                        .+|||++|+.|++++||+++++
T Consensus       142 ------------------------------~~~~------------------------~~~Lk~~l~~~~~~~f~~~~~~  167 (266)
T d1jjca_         142 ------------------------------EGIA------------------------MAHLKGAIYELAQALFGPDSKV  167 (266)
T ss_dssp             ------------------------------TTCC------------------------HHHHHHHHHHHHHHHHCTTCCE
T ss_pred             ------------------------------cccc------------------------HHHHHHHHHHHHHHhcCCCcEE
Confidence                                          2233                        2799999999999999999999


Q ss_pred             EEeccCCCCCCCceEEEeee--CCceEEEeecccccccccC
Q psy7414         281 RWISEYFPFTHPSWELEILL--NDKWVEILGCGVIRHEILD  319 (320)
Q Consensus       281 Rw~~ayFPFTePS~EleV~~--~g~WLEvLGCGvv~~~vL~  319 (320)
                      ||+|+||||||||+||+|+|  .|+|||||||||++|+||+
T Consensus       168 R~~p~yFPFTePS~Ev~v~~~~~~~WlEilG~Gmv~p~vL~  208 (266)
T d1jjca_         168 RFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQ  208 (266)
T ss_dssp             EEEECCCTTEEEEEEEEEEEGGGTEEEEEEEEEEECHHHHH
T ss_pred             EEecccCCCccCCcceEEEEeecCCcceEEeecccCHHHHH
Confidence            99999999999999999999  5789999999999999985
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure