Psyllid ID: psy7416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
TLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEKEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQPEQEEEFEDSLGNVVNRKTYEDLKRQGLL
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEccEEccccccccHHHHHHHcccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHcccccccccccccccccHHHHccccEcccccccHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHcccccccccEEEEccccccccHHHHHHHHHccccccHHHcccccccccccccHHHHHHHcccc
Coil and Loop (DISEMBL)
TLEERAQRLFstkgktaldpsllakskpdkglkSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRkqargegergdseeseagdtsdeddekEAGSVLTHVgahldlsaFSSWEELASLGLDRLKTLEERAQRLFStkgktaldpsllakskpdkglkSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRkqargegergdseeseagdtsdeddevpynpknlplgwdgkpipywlyklhglnISYTCeicgnfvykgpkAFQRHFAEWRHAhgmrclgipntahfanVTQIEDALALWEKLKAQKQeerwqpeqeEEFEDSLgnvvnrktyedlkrqgwqpeqeEEFEDSLgnvvnrktyEDLKRQGLL
Flexible Loop (DISEMBL)
tleeraqrlfstkgktaldpsllakskpdkglkskQQERQKEIAGLEAQIYKLAEqvseqrsatkdnvqrkqargegergdseeseagdtsdeddEKEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLfstkgktaldpsllakskpdkglkskQQERQKEIAGLEAQIYKLAEqvseqrsatkdnvqrkqargegergdseeseagdtsdeddevpynpKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEErwqpeqeeefedslgnvvnRKTYEDLkrqgwqpeqeeefedslgnvvnrktyedlkrqgll
Low Complexity Region (SEG)
TLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQargegergdseeseagdTSDEDDEKEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQargegergdseeseagdTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAqkqeerwqpeqeeefeDSLGNVVNRKTYEDLKRQGWQPEQEEEFEDSLGNVVNRKTYEDLKRQGLL
Disordered region (IsUnstruct)
*****************************************************************************************************VLTHVGAHLDLSAFSSWEELASLGLDRLKT******************************************************************************************************LPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKL********************************************************************
Disordered Region (DISOPRED)
TLEERAQRLFSTKGKTAL*************************AGLEAQIYKLAEQVSE**********************************************VGAHLDLSAFSSWEELASLGLDRLKTLEERA************************************IAGLEAQIYKLAEQVSEQRSATKDNVQ******************************NPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALW*******************FEDSLGNVVNRKTYEDLKRQGWQPEQEEEFEDSLGNVVNRKTYEDLKRQGL*
Disordered Region (DISEMBL)
TLEERAQRLFSTKGKTALDPSLLAKS*************QKEIAGLEAQIYKLAEQ********************************************SVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKS*************QKEIAGLEAQIYKLAEQ****************************************VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLK******************SLGNVVNRKTYE*****************SLGNVVNRKTYE********
Disordered Region (DISPRO)
*****AQRLFSTK*K*ALDPSLLAK********SKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRK**************************************LDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALD***LA*************ERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEE**********DEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQPEQEEEFEDSLGNVVNRKTYEDLKR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLxxxxxxxxxxxxxxxxxxxxxGEGERGDSEESEAGDTSDEDDEKEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLxxxxxxxxxxxxxxxxxxxxxGEGERGDSEESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANxxxxxxxxxxxxxxxxxxxxxRWQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQPEQEEEFEDSLGNVVNRKTYEDLKRQGLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
O46106	503	Splicing factor 3A subuni	yes	N/A	0.666	0.504	0.745	1e-111
Q9D554	501	Splicing factor 3A subuni	yes	N/A	0.664	0.504	0.703	1e-101
Q12874	501	Splicing factor 3A subuni	yes	N/A	0.664	0.504	0.703	1e-100
O59706	492	Pre-mRNA-splicing factor	yes	N/A	0.485	0.376	0.413	2e-37
P19736	530	Pre-mRNA-splicing factor	yes	N/A	0.496	0.356	0.331	4e-27
Q7T293	467	Protein SDE2 homolog OS=D	no	N/A	0.270	0.220	0.387	3e-08
Q8K1J5	448	Protein SDE2 homolog OS=M	no	N/A	0.136	0.116	0.529	7e-07

>sp|O46106|NOI_DROME Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/271 (74%), Positives = 221/271 (81%), Gaps = 17/271 (6%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE  S L + GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETESALANTGAHLDLSAFSSWEELASLGLDRLKSALVALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAK--SKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
           K+ LDP+L+AK  S      +S++ ER KEIA LEA +YK A+ +SEQR+ATK+NVQRKQ
Sbjct: 291 KSTLDPALMAKKPSAKTASAQSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQ 350

Query: 203 ARGEGERGDS--EESEAGDTSDEDDE-VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTC 259
           AR  GER DS  E SE+ +  D D + VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY C
Sbjct: 351 ARTGGERDDSDVEASESDNEDDPDADDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNC 410

Query: 260 EICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQE 319
           EICGNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA+ LWEKLK+QKQ 
Sbjct: 411 EICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQKQS 470

Query: 320 ERWQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           ERW  +QEEEFEDSLGNVVNRKT+EDLKRQG
Sbjct: 471 ERWVADQEEEFEDSLGNVVNRKTFEDLKRQG 501

Probable subunit of a splicing factor complex required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA (By similarity). Involved in male fertility.
Drosophila melanogaster (taxid: 7227)

>sp|Q9D554|SF3A3_MOUSE Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2

 Score =  367 bits (942), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 190/270 (70%), Positives = 213/270 (78%), Gaps = 17/270 (6%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
           K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct: 291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQ 349

Query: 203 ARG--EGERGDSEESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
           AR   E E  + E+    ++ DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct: 350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query: 261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEE 320
           ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK QK  E
Sbjct: 410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query: 321 RWQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           RWQP+ EEE+EDS GNVVN+KTYEDLKRQG
Sbjct: 470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Mus musculus (taxid: 10090)

>sp|Q12874|SF3A3_HUMAN Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1

 Score =  367 bits (941), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/270 (70%), Positives = 213/270 (78%), Gaps = 17/270 (6%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
           K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct: 291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQ 349

Query: 203 ARG--EGERGDSEESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
           AR   E E  + E+    ++ DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct: 350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query: 261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEE 320
           ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK QK  E
Sbjct: 410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query: 321 RWQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           RWQP+ EEE+EDS GNVVN+KTYEDLKRQG
Sbjct: 470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

Subunit of the splicing factor SF3A required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex.

Homo sapiens (taxid: 9606)

>sp|O59706|SAP61_SCHPO Pre-mRNA-splicing factor sap61 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap61 PE=1 SV=1

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 115/203 (56%), Gaps = 18/203 (8%)

Query: 166 QQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGER---------------- 209
           +Q+  K IA +E  I KL   + + R  T++NV R+Q     ER                
Sbjct: 288 KQKGPKAIARIEFLIKKLTSLLDDVRKDTRENVVRRQTLTAAERLAEVEAAEREAFEQST 347

Query: 210 --GDSEESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVY 267
                E ++  ++  +D+E  YNP  LPLGWDGKPIP+WL+KLHGL   + CEICGN+VY
Sbjct: 348 PSVSVEGNQDEESDQDDEEKIYNPLKLPLGWDGKPIPFWLWKLHGLGKEFPCEICGNYVY 407

Query: 268 KGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQE 327
            G KAF +HF E RH +G++CLGI  +  F  +T I++AL LW+K K   ++        
Sbjct: 408 MGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYKVDSKKRETTMASL 467

Query: 328 EEFEDSLGNVVNRKTYEDLKRQG 350
            E ED  GNV++ K Y DLK QG
Sbjct: 468 NEMEDDEGNVMSEKVYNDLKAQG 490

Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P19736|PRP9_YEAST Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP9 PE=1 SV=1

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 37/226 (16%)

Query: 162 LKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERG----------- 210
           +  K + +++     E ++++  + ++++ S T+  V+RK A    ER            
Sbjct: 303 IHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEMDILTQKYE 362

Query: 211 ----DSEESEAGDTSD--------EDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYT 258
               DS E E  +  D        +++ +     ++PLG DG P+PYWLYKLHGL+  Y 
Sbjct: 363 APAYDSTEKEGAEQVDGEQRDGQLQEEHLSGKSFDMPLGPDGLPMPYWLYKLHGLDREYR 422

Query: 259 CEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ 318
           CEIC N VY G + F+RHF E RH + +RCLGI  ++ F  +T+I++A  LW+ ++ Q Q
Sbjct: 423 CEICSNKVYNGRRTFERHFNEERHIYHLRCLGIEPSSVFKGITKIKEAQELWKNMQGQSQ 482

Query: 319 -------EERWQPEQ-------EEEFEDSLGNVVNRKTYEDLKRQG 350
                    +  P Q       E E ED  GNV+++K Y++LK+QG
Sbjct: 483 LTSIAAVPPKPNPSQLKVPTELELEEEDEEGNVMSKKVYDELKKQG 528

mRNA splicing factors, PRP9, PRP11, and PRP21, are necessary for binding of the U2 snRNP to the pre-mRNA in an early step of spliceosome assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7T293|SDE2_DANRE Protein SDE2 homolog OS=Danio rerio GN=sde2 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 67/129 (51%), Gaps = 26/129 (20%)

Query: 49  QIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEKEAGSVLTHVGA 108
           Q  +  E+++E+   T + VQ+K          +EES A  +      +E   VL+ V  
Sbjct: 350 QTAERVEKMAEEVQKTAEEVQKK----------TEESTAEISPSSSIPEEKSQVLSQVED 399

Query: 109 HLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKTA--LDPSLLA 154
            LDL + S  E+L +LGL+RLK            TL+ERA RLFS KG T   +DPSLLA
Sbjct: 400 PLDLLSVSGPEQLEALGLERLKKELMERGMKCGGTLQERAARLFSVKGLTPDQIDPSLLA 459

Query: 155 KSKPDKGLK 163
             KP KG K
Sbjct: 460 --KPSKGKK 466

Danio rerio (taxid: 7955)

>sp|Q8K1J5|SDE2_MOUSE Protein SDE2 homolog OS=Mus musculus GN=Sde2 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 42/68 (61%), Gaps = 16/68 (23%)

Query: 110 LDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALDPSLLAK 155
           +DLSAFSS  EL SLGL+RLK            TL+ERA RLFS +G T   +DP+L A 
Sbjct: 382 VDLSAFSSAAELESLGLERLKCELMVLGLKCGGTLQERAARLFSVRGLTKELIDPALFA- 440

Query: 156 SKPDKGLK 163
            KP KG K
Sbjct: 441 -KPSKGKK 447

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
332376839	500	unknown [Dendroctonus ponderosae]	0.666	0.508	0.783	1e-118
322784954	500	hypothetical protein SINV_07726 [Solenop	0.666	0.508	0.802	1e-118
307175386	500	Splicing factor 3A subunit 3 [Camponotus	0.666	0.508	0.791	1e-117
332017111	500	Splicing factor 3A subunit 3 [Acromyrmex	0.666	0.508	0.794	1e-116
307193855	500	Splicing factor 3A subunit 3 [Harpegnath	0.666	0.508	0.791	1e-116
156547467	500	PREDICTED: splicing factor 3A subunit 3-	0.666	0.508	0.798	1e-116
66525114	501	PREDICTED: splicing factor 3A subunit 3	0.666	0.506	0.799	1e-116
383861033	501	PREDICTED: splicing factor 3A subunit 3	0.666	0.506	0.795	1e-116
350403905	501	PREDICTED: splicing factor 3A subunit 3-	0.666	0.506	0.795	1e-116
340725400	501	PREDICTED: splicing factor 3A subunit 3-	0.666	0.506	0.795	1e-116

>gi|332376839|gb|AEE63559.1| unknown [Dendroctonus ponderosae]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/268 (78%), Positives = 227/268 (84%), Gaps = 14/268 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS L +VGAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALANVGAHLDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQAR 204
           +++LDPSL+ K    K  K K+  RQKE+AGLEAQIY+L+E VSEQR ATK+NVQRKQAR
Sbjct: 291 QSSLDPSLMIKGTKGKANKGKEALRQKELAGLEAQIYRLSELVSEQRVATKENVQRKQAR 350

Query: 205 GEGERGDSEESEAGDTSDE--DDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEIC 262
            +GER DSE  E+ + S +  DD+VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEIC
Sbjct: 351 TDGERDDSENDESDNESPDEADDDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEIC 410

Query: 263 GNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERW 322
           GN+VYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLK QKQ ERW
Sbjct: 411 GNYVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKTQKQSERW 470

Query: 323 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           QPE EEE+EDS GNVVNRKTYEDLKRQG
Sbjct: 471 QPETEEEYEDSQGNVVNRKTYEDLKRQG 498

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784954|gb|EFZ11725.1| hypothetical protein SINV_07726 [Solenopsis invicta]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/268 (80%), Positives = 230/268 (85%), Gaps = 14/268 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQAR 204
           + +LDP+LLAK++  K  K+K  E+QKEIA LEA +YKLAE VS QR ATK+NVQRKQAR
Sbjct: 291 EASLDPNLLAKNRKGKSAKNKDSEKQKEIARLEAHVYKLAELVSSQRVATKENVQRKQAR 350

Query: 205 GEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEIC 262
            EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEIC
Sbjct: 351 TEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEIC 410

Query: 263 GNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERW 322
           GNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ERW
Sbjct: 411 GNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAERW 470

Query: 323 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           QPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 498

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175386|gb|EFN65405.1| Splicing factor 3A subunit 3 [Camponotus floridanus]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/268 (79%), Positives = 230/268 (85%), Gaps = 14/268 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KEAGS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KEAGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQAR 204
           + +LDP+LLAK++  K  K++  E+QKEIA  EA +Y+LAE +S QR ATK+NVQRKQAR
Sbjct: 291 EASLDPNLLAKNRKGKSAKTRDSEKQKEIARFEAHVYRLAELISSQRVATKENVQRKQAR 350

Query: 205 GEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEIC 262
            EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEIC
Sbjct: 351 TEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEIC 410

Query: 263 GNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERW 322
           GNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ERW
Sbjct: 411 GNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAERW 470

Query: 323 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           QPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 498

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017111|gb|EGI57910.1| Splicing factor 3A subunit 3 [Acromyrmex echinatior]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/268 (79%), Positives = 227/268 (84%), Gaps = 14/268 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS L HVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALAHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQAR 204
           + +LDP+LLAK++  K  K K  E+QKEIA  EA +YKLAE VS QR ATK+NVQRKQAR
Sbjct: 291 EASLDPNLLAKNRKGKSAKGKDSEKQKEIARFEAHVYKLAELVSSQRVATKENVQRKQAR 350

Query: 205 GEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEIC 262
            EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEIC
Sbjct: 351 TEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEIC 410

Query: 263 GNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERW 322
           GNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ERW
Sbjct: 411 GNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAERW 470

Query: 323 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           QPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 498

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193855|gb|EFN76489.1| Splicing factor 3A subunit 3 [Harpegnathos saltator]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/268 (79%), Positives = 230/268 (85%), Gaps = 14/268 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KEAGS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KEAGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQAR 204
           + +LDP+LLAK++  K  K +  E+QKEIA LE+ +Y+LAE VS QR ATK+NVQRKQAR
Sbjct: 291 EASLDPNLLAKNRKGKSAKGRDSEKQKEIARLESHVYRLAELVSGQRVATKENVQRKQAR 350

Query: 205 GEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEIC 262
            EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEIC
Sbjct: 351 TEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEIC 410

Query: 263 GNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERW 322
           GNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALW+KLKAQKQ ERW
Sbjct: 411 GNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWDKLKAQKQAERW 470

Query: 323 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           QPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 498

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156547467|ref|XP_001606271.1| PREDICTED: splicing factor 3A subunit 3-like [Nasonia vitripennis]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/268 (79%), Positives = 228/268 (85%), Gaps = 14/268 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KEAGS LT+VGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KEAGSALTNVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQAR 204
           + +LDP+LLAK K  K  K K  E+QKEIA  EA +YKLAE VS QR ATK+NVQRKQAR
Sbjct: 291 EASLDPNLLAKKKQRKPGKGKNVEKQKEIARYEAHVYKLAELVSSQRVATKENVQRKQAR 350

Query: 205 GEGERGDSEESEAGDTSDED--DEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEIC 262
            EGERGDS+   +   S+E+  ++VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEIC
Sbjct: 351 TEGERGDSDAEASASESEEEDDNDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEIC 410

Query: 263 GNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERW 322
           GNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ERW
Sbjct: 411 GNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAERW 470

Query: 323 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           QPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 QPEQEEEFEDSLGNVVNRKTYEDLKRQG 498

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66525114|ref|XP_397399.2| PREDICTED: splicing factor 3A subunit 3 [Apis mellifera] gi|380016396|ref|XP_003692171.1| PREDICTED: splicing factor 3A subunit 3-like [Apis florea]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/269 (79%), Positives = 229/269 (85%), Gaps = 15/269 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKS-KPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQA 203
           + +LDP+LLAKS K  K  K +  E+QKEIA LE+ +YKLAE VS QR ATK+NVQRKQA
Sbjct: 291 EASLDPNLLAKSSKNRKSGKGRNSEKQKEIAYLESHVYKLAELVSTQRVATKENVQRKQA 350

Query: 204 RGEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEI 261
           R EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEI
Sbjct: 351 RTEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEI 410

Query: 262 CGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEER 321
           CGNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ER
Sbjct: 411 CGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAER 470

Query: 322 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           WQPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 499

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861033|ref|XP_003705991.1| PREDICTED: splicing factor 3A subunit 3 [Megachile rotundata]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 230/269 (85%), Gaps = 15/269 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPD-KGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQA 203
           + +LDP+LLAK+  + K  K +  E+QKEIA LEAQ+Y+LAE VS QR ATK+NVQRKQA
Sbjct: 291 EASLDPNLLAKNNRNRKSGKGRNSEKQKEIARLEAQVYRLAELVSSQRVATKENVQRKQA 350

Query: 204 RGEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEI 261
           R EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEI
Sbjct: 351 RTEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEI 410

Query: 262 CGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEER 321
           CGNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ER
Sbjct: 411 CGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAER 470

Query: 322 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           WQPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 499

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403905|ref|XP_003486944.1| PREDICTED: splicing factor 3A subunit 3-like [Bombus impatiens]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 229/269 (85%), Gaps = 15/269 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPD-KGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQA 203
           + +LDP+LLAK+  + K  K +  E+QKEIA  EAQ+YKLAE VS QR ATK+NVQRKQA
Sbjct: 291 EASLDPNLLAKNNRNRKSGKGRNSEKQKEIAHFEAQVYKLAELVSTQRVATKENVQRKQA 350

Query: 204 RGEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEI 261
           R EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEI
Sbjct: 351 RTEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEI 410

Query: 262 CGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEER 321
           CGNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ER
Sbjct: 411 CGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAER 470

Query: 322 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           WQPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 499

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725400|ref|XP_003401058.1| PREDICTED: splicing factor 3A subunit 3-like [Bombus terrestris]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 229/269 (85%), Gaps = 15/269 (5%)

Query: 97  KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
           KE GS LTHVGAHL+LSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct: 231 KETGSALTHVGAHLELSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query: 145 KTALDPSLLAKSKPD-KGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQA 203
           + +LDP+LLAK+  + K  K +  E+QKEIA  EAQ+YKLAE VS QR ATK+NVQRKQA
Sbjct: 291 EASLDPNLLAKNNRNRKSGKGRNSEKQKEIAHFEAQVYKLAELVSTQRVATKENVQRKQA 350

Query: 204 RGEGERGDSEESEAGDTSDEDDE--VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEI 261
           R EGERGDS+   +   S+E+D+  VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEI
Sbjct: 351 RTEGERGDSDAEASASESEEEDDNEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEI 410

Query: 262 CGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEER 321
           CGNF YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQ ER
Sbjct: 411 CGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQAER 470

Query: 322 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 350
           WQPEQEEEFEDSLGNVVNRKTYEDLKRQG
Sbjct: 471 WQPEQEEEFEDSLGNVVNRKTYEDLKRQG 499

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
UNIPROTKB|Q5F387	501	SF3A3 "Uncharacterized protein	0.664	0.504	0.648	6e-87
ZFIN|ZDB-GENE-040908-1	501	sf3a3 "splicing factor 3a, sub	0.664	0.504	0.651	1.6e-86
MGI|MGI:1922312	501	Sf3a3 "splicing factor 3a, sub	0.664	0.504	0.644	8.9e-86
UNIPROTKB|Q4KLI7	501	Sf3a3 "Protein Sf3a3" [Rattus	0.664	0.504	0.644	8.9e-86
UNIPROTKB|E2QXU5	501	SF3A3 "Uncharacterized protein	0.664	0.504	0.644	1.1e-85
UNIPROTKB|E7EUT8	448	SF3A3 "Splicing factor 3A subu	0.664	0.564	0.644	1.1e-85
UNIPROTKB|Q12874	501	SF3A3 "Splicing factor 3A subu	0.664	0.504	0.644	1.1e-85
UNIPROTKB|F1SV40	501	SF3A3 "Uncharacterized protein	0.664	0.504	0.644	1.1e-85
UNIPROTKB|Q3SWY7	501	SF3A3 "Splicing factor 3a, sub	0.664	0.504	0.644	1.4e-85
FB|FBgn0014366	503	noi "noisette" [Drosophila mel	0.632	0.479	0.645	4.7e-80

UNIPROTKB|Q5F387 SF3A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 175/270 (64%), Positives = 194/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  ALDPSL AK+   KG+K +  ER K++A LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLEALDPSLFAKNPKTKGIK-RDTERNKDLAFLEAQIYEYVEVLGEQRHLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

ZFIN|ZDB-GENE-040908-1 sf3a3 "splicing factor 3a, subunit 3" [Danio rerio (taxid:7955)]

 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 176/270 (65%), Positives = 193/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LDPSL AK+   KG K K  ER KE A LEAQIY+  E + EQR  + +NVQRKQ
Sbjct:   291 KSLESLDPSLFAKNPKAKGPK-KDSERNKESAFLEAQIYEYVEILGEQRQLSHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DED+E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEERDEEDEEQPSESESEDEDNEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK+     
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWSKLKSQKALE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

MGI|MGI:1922312 Sf3a3 "splicing factor 3a, subunit 3" [Mus musculus (taxid:10090)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|Q4KLI7 Sf3a3 "Protein Sf3a3" [Rattus norvegicus (taxid:10116)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|E2QXU5 SF3A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E7EUT8 SF3A3 "Splicing factor 3A subunit 3" [Homo sapiens (taxid:9606)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   178 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 237

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   238 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQ 296

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   297 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 356

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   357 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 416

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   417 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 446

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q12874 SF3A3 "Splicing factor 3A subunit 3" [Homo sapiens (taxid:9606)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0000389 "mRNA 3'-splice site recognition" evidence=TAS

GO:0006397 "mRNA processing" evidence=IMP

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1SV40 SF3A3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLESLDTSLFAKNPKSKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q3SWY7 SF3A3 "Splicing factor 3a, subunit 3" [Bos taurus (taxid:9913)]

 Score = 856 (306.4 bits), Expect = 1.4e-85, P = 1.4e-85
 Identities = 174/270 (64%), Positives = 192/270 (71%)

Query:    97 KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKG 144
             KE  S LTH GAHLDLSAFSSWEELASLGLDRLK            TLEERAQRLFSTKG
Sbjct:   231 KETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLEERAQRLFSTKG 290

Query:   145 KT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQ 202
             K+  +LD SL AK+   KG K +  ER K+IA LEAQIY+  E + EQR  T +NVQRKQ
Sbjct:   291 KSLESLDTSLFAKNPKTKGTK-RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQ 349

Query:   203 XXXXXXXXXXXXX--XXXXTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCE 260
                                + DE++E+ YNPKNLPLGWDGKPIPYWLYKLHGLNI+Y CE
Sbjct:   350 ARTGEEREEEEEEQISESESEDEENEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCE 409

Query:   261 ICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXX 320
             ICGN+ Y+GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA++LW KLK      
Sbjct:   410 ICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASE 469

Query:   321 XXXXXXXXXXXDSLGNVVNRKTYEDLKRQG 350
                        DS GNVVN+KTYEDLKRQG
Sbjct:   470 RWQPDTEEEYEDSSGNVVNKKTYEDLKRQG 499

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0014366 noi "noisette" [Drosophila melanogaster (taxid:7227)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 160/248 (64%), Positives = 179/248 (72%)

Query:   108 AHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDK--GLKSK 165
             A L L    S   L +LGL    TLEERAQRLFSTKGK+ LDP+L+AK    K    +S+
Sbjct:   256 ASLGLDRLKS--ALVALGLKCGGTLEERAQRLFSTKGKSTLDPALMAKKPSAKTASAQSR 313

Query:   166 QQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQXXXXXXXXXXXXXXXXXTSDED- 224
             + ER KEIA LEA +YK A+ +SEQR+ATK+NVQRKQ                  +++D 
Sbjct:   314 EHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQARTGGERDDSDVEASESDNEDDP 373

Query:   225 --DEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRH 282
               D+VPYNPKNLPLGWDGKPIPYWLYKLHGLNISY CEICGNF YKGPKAFQRHFAEWRH
Sbjct:   374 DADDVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNFTYKGPKAFQRHFAEWRH 433

Query:   283 AHGMRCLGIPNTAHFANVTQIEDALALWEKLKAXXXXXXXXXXXXXXXXDSLGNVVNRKT 342
             AHGMRCLGIPNTAHFANVTQIEDA+ LWEKLK+                DSLGNVVNRKT
Sbjct:   434 AHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKT 493

Query:   343 YEDLKRQG 350
             +EDLKRQG
Sbjct:   494 FEDLKRQG 501

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0009566 "fertilization" evidence=IMP

GO:0005686 "U2 snRNP" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q12874	SF3A3_HUMAN	No assigned EC number	0.7037	0.6640	0.5049	yes	N/A
O46106	NOI_DROME	No assigned EC number	0.7453	0.6666	0.5049	yes	N/A
Q9D554	SF3A3_MOUSE	No assigned EC number	0.7037	0.6640	0.5049	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	381
pfam11931	187	pfam11931, DUF3449, Domain of unknown function (DU	2e-95
COG5188	470	COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA	4e-45
pfam13297	60	pfam13297, Telomere_Sde2_2, Telomere stability C-t	2e-14
pfam11931	187	pfam11931, DUF3449, Domain of unknown function (DU	2e-07
pfam13297	60	pfam13297, Telomere_Sde2_2, Telomere stability C-t	4e-05
TIGR00927	1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.003

>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449)

 Score =  282 bits (723), Expect = 2e-95
 Identities = 109/184 (59%), Positives = 136/184 (73%), Gaps = 9/184 (4%)

Query: 176 LEAQIYKLAEQVSEQRSATKDNVQRKQARGEGER---------GDSEESEAGDTSDEDDE 226
           LE +I KLAE + ++R  T +NV+RKQA  E ER           SE+    D+ D+++E
Sbjct: 3   LEFKIEKLAELLKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDEEE 62

Query: 227 VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGM 286
             YNP NLPLGWDGKPIPYWLYKLHGL   + CEICGN  YKG KAF++HF+EWRHA+G+
Sbjct: 63  PIYNPLNLPLGWDGKPIPYWLYKLHGLGKEFKCEICGNTSYKGRKAFEKHFSEWRHAYGL 122

Query: 287 RCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDL 346
           +CLGIPNT HF  +T IE+AL LWEKLK Q + +R++PE EEE ED  GNV+++KTYEDL
Sbjct: 123 KCLGIPNTRHFKEITSIEEALELWEKLKKQTKRKRFEPENEEEVEDEEGNVMSKKTYEDL 182

Query: 347 KRQG 350
           KRQG
Sbjct: 183 KRQG 186

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG. The domain carries a zinc-finger domain of the C2H2-type. Length = 187

>gnl|CDD|227515 COG5188, PRP9, Splicing factor 3a, subunit 3 [RNA processing and modification]

 Score =  161 bits (408), Expect = 4e-45
 Identities = 75/204 (36%), Positives = 108/204 (52%), Gaps = 18/204 (8%)

Query: 165 KQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDS------------ 212
           K+ + ++E    E  +++  + + +  S T+  V R  A    ER               
Sbjct: 265 KEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKAEISLLSRRKKQPA 324

Query: 213 ------EESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFV 266
                 E +E  D    D+ V     ++PLG DG P+P WL KLHGL+I + CEICGN+V
Sbjct: 325 TKSSEKEGAEQVDGEQRDEHVSGKSFDMPLGPDGLPMPRWLCKLHGLDIEFECEICGNYV 384

Query: 267 YKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQ 326
           Y G   F RHF E RH +G+ CLGI  +  F  +T+I +A+ LW +++      +   E 
Sbjct: 385 YYGRDRFDRHFEEDRHIYGLECLGIKPSRVFKGITRIGEAMKLWNRMEESSSSLKVPTEY 444

Query: 327 EEEFEDSLGNVVNRKTYEDLKRQG 350
            EEFED  GNV+++K YEDLKRQG
Sbjct: 445 SEEFEDEEGNVMSKKVYEDLKRQG 468

Length = 470

>gnl|CDD|205477 pfam13297, Telomere_Sde2_2, Telomere stability C-terminal

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 33/60 (55%), Positives = 35/60 (58%), Gaps = 14/60 (23%)

Query: 110 LDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKTA--LDPSLLAK 155
           LDL AFSS EEL +LGLDRLK            TL+ERA RLFS KG     LD  L AK
Sbjct: 1   LDLDAFSSAEELEALGLDRLKAALMALGLKCGGTLQERAARLFSLKGLPLEELDKKLFAK 60

This short C-terminal domain is found in higher eukaryotes further downstream from the Sde2 family, pfam13019. It is found in all Sde2-related proteins except those from fission yeast, fly, and mosquito. Its exact function in telomere formation and maintenance has not yet been established. Length = 60

>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449)

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 46  LEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEKEAGS 101
           LE +I KLAE + ++R  T +NV+RKQA  E ER  S +  + D S++  + ++  
Sbjct: 3   LEFKIEKLAELLKKEREDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDD 58

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 181 to 207 amino acids in length. This domain has two conserved sequence motifs: PIP and CEICG. The domain carries a zinc-finger domain of the C2H2-type. Length = 187

>gnl|CDD|205477 pfam13297, Telomere_Sde2_2, Telomere stability C-terminal

 Score = 40.6 bits (96), Expect = 4e-05
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 1  TLEERAQRLFSTKGKTA--LDPSLLAK 25
          TL+ERA RLFS KG     LD  L AK
Sbjct: 34 TLQERAARLFSLKGLPLEELDKKLFAK 60

This short C-terminal domain is found in higher eukaryotes further downstream from the Sde2 family, pfam13019. It is found in all Sde2-related proteins except those from fission yeast, fly, and mosquito. Its exact function in telomere formation and maintenance has not yet been established. Length = 60

>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 38/194 (19%), Positives = 72/194 (37%), Gaps = 5/194 (2%)

Query: 36  QQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDD 95
             ER+ E  G      K A+   E  +   ++    +A G  + G+ E  E G+  +++ 
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG 745

Query: 96  EKEA-GSVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLA 154
           E EA G            +      E      +     E +A      KG    +  +  
Sbjct: 746 EGEAEGKHEVETEGDRKETEHEGETEAEGKEDE--DEGEIQAGEDGEMKGDEGAEGKVEH 803

Query: 155 KSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQ--VSEQRSATKDNVQRKQARGEGERGDS 212
           + + + G K + + + +  A       +  EQ   +E +   K + +     G  + GDS
Sbjct: 804 EGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDS 863

Query: 213 EESEAGDTSDEDDE 226
           EE E  +  +E++E
Sbjct: 864 EEEEEEEEEEEEEE 877

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG2636|consensus	497		100.0
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	100.0
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	100.0
KOG2636|consensus	497		99.69
PF13297	60	Telomere_Sde2_2: Telomere stability C-terminal	99.23
PF11931	196	DUF3449: Domain of unknown function (DUF3449); Int	98.79
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	98.01
KOG2827|consensus	322		97.65
PF13297	60	Telomere_Sde2_2: Telomere stability C-terminal	97.06
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	94.85
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.76
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	86.29
PLN02748	468	tRNA dimethylallyltransferase	84.67
smart00355	26	ZnF_C2H2 zinc finger.	83.64
COG4481	60	Uncharacterized protein conserved in bacteria [Fun	83.05
PF06397	36	Desulfoferrod_N: Desulfoferrodoxin, N-terminal dom	82.71
PF09943	101	DUF2175: Uncharacterized protein conserved in arch	80.7

>KOG2636|consensus

Probab=100.00  E-value=4.2e-95  Score=725.89  Aligned_cols=261  Identities=60%  Similarity=0.977  Sum_probs=239.4

Q ss_pred             cccCCCCCCcch-hhcccccccccccCCccccccHHHHHhccCCccc------------cHHHHHHhhhhccCCC--CCC
Q psy7416          85 SEAGDTSDEDDE-KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALD  149 (381)
Q Consensus        85 ~~s~~~~~edwe-~e~~~~~~~~~~~~dl~~~~s~~el~~lgL~~lk------------tl~eRA~RLf~~kg~~--~ld  149 (381)
                      .|..+ ..|+|+ +++.++.+     +||+.++|+++|+++||.+++            |+++||+|||+|++.+  .|+
T Consensus       219 ~~~aG-~lpg~~~~et~~~~~-----~dl~~~~s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~  292 (497)
T KOG2636|consen  219 AWAAG-TLPGWKYKETFSAKA-----LDLSGASSVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLD  292 (497)
T ss_pred             HHHhC-CCCCccccccccccc-----cccchhhHHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhh
Confidence            67777 889999 55555444     999999999999988877777            9999999999999999  999


Q ss_pred             hhhhcCCCCCcccchhHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccCCC--C-CCCCCC
Q psy7416         150 PSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGD--T-SDEDDE  226 (381)
Q Consensus       150 ~slFAK~~~gKs~~~~~~~~~k~~a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~~~e~~~~~~~--~-~~~~~~  226 (381)
                      +++|+++.+.+ ++.....+.++||+.|++|.+++.+|+++|.+|++||.|||++|+.|++.|.++++++  + ++|+++
T Consensus       293 ~~~~~kn~s~~-~~~~~~~~~keia~tEa~v~k~~~iL~eeR~~t~env~rKq~~ta~e~E~E~~eq~~~~~e~~~de~~  371 (497)
T KOG2636|consen  293 TKLFAKNPSKK-GHRREKERNKEIARTEALVKKLLAILAEERKATRENVVRKQARTAEEREEEEEEQSDSDEESDDDEEE  371 (497)
T ss_pred             hhhhccCcccc-hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccchhh
Confidence            99999998887 6788888999999999999999999999999999999999999999998877665542  2 333677


Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHhhCCCceecceeccCCcccChhhhhhhcchhhhhhcccccCCCCCccccccccHHHH
Q psy7416         227 VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA  306 (381)
Q Consensus       227 ~~ynp~~lPlg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA  306 (381)
                      .||||+||||||||||||||||||||||++|+||||||++|||||||+|||+||||+|||||||||||+||++||+|+||
T Consensus       372 ~~ynp~~lPLGwDGkPiPyWLyKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCLGIpnt~~F~~IT~I~eA  451 (497)
T KOG2636|consen  372 LIYNPKNLPLGWDGKPIPYWLYKLHGLDIEYNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCLGIPNTSVFKGITKIEEA  451 (497)
T ss_pred             ccCCcccCCCCCCCCcCchHHHhhcCCCcccceeeccCccccCcHHHHHHhHHHHHhhcceecCCCCcHHhcccccHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccCCCCCceeecCCCCcccHHHHHHHHhcCCC
Q psy7416         307 LALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQ  352 (381)
Q Consensus       307 ~~Lw~klk~~~~~~~~~~~~~~E~ED~~GNV~~qkLyedLkrQgli  352 (381)
                      +.||++||.++....|.|+.++||||++|||||+++|++||||||+
T Consensus       452 ~~LW~k~k~q~~~~kw~~~~eeE~ED~eGNV~~kKtYeDLKrQGLl  497 (497)
T KOG2636|consen  452 LELWKKMKEQSQSEKWPPDLEEEYEDEEGNVMNKKTYEDLKRQGLL  497 (497)
T ss_pred             HHHHHHHHHhhhhccCCchhHhhhhccccCcccHHhHHHHHHccCC
Confidence            9999999999999999999999999999999888888888888875

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=100.00  E-value=1.5e-87  Score=619.48  Aligned_cols=178  Identities=65%  Similarity=1.129  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccc--------------c----CCCCCCCCCCCCCCCCCCC
Q psy7416         174 AGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEES--------------E----AGDTSDEDDEVPYNPKNLP  235 (381)
Q Consensus       174 a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~~~e~~~--------------~----~~~~~~~~~~~~ynp~~lP  235 (381)
                      |+.|++|++|+++|+++|++|++||+||||+|++||++|...              .    .+++++++++.+|||+|||
T Consensus         1 ~~~E~~i~~~~~~L~~~~~~T~~~verk~a~T~~E~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~lP   80 (196)
T PF11931_consen    1 ARREYKIHKLCELLSEEREDTKENVERKQARTEEERQAEEEYEEEIYSEDEYEEEEEEEESEEDSDDDEEEKIYNPLNLP   80 (196)
T ss_dssp             -HHHHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHHHHHTS-SS-TT--SS--B-----------------------
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCcccCC
Confidence            578999999999999999999999999999999999994210              0    0112233677899999999


Q ss_pred             CCCCCCCchhHHHHhhCCCceecceeccCCcccChhhhhhhcchhhhhhcccccCCCCCccccccccHHHHHHHHHHHHH
Q psy7416         236 LGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKA  315 (381)
Q Consensus       236 lg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA~~Lw~klk~  315 (381)
                      |||||||||||||||||||++|+||||||++|||||||+|||+||||+|||||||||||+||++||+|+||++||++|+.
T Consensus        81 LG~DGkPIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~nt~~F~~IT~I~dA~~Lw~kl~~  160 (196)
T PF11931_consen   81 LGWDGKPIPYWLYKLHGLGVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGIPNTKHFKGITKIEDALELWEKLKK  160 (196)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCcccHHHHHHhCCCCeeeeEeCCCcceecHHHHHHhcChhHHHccChhcCCCCcHHHcCcCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCceeecCCCCcccHHHHHHHHhcCC
Q psy7416         316 QKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGW  351 (381)
Q Consensus       316 ~~~~~~~~~~~~~E~ED~~GNV~~qkLyedLkrQgl  351 (381)
                      +....+|.+++++||||++|||||+++|.+|+||||
T Consensus       161 ~~~~~~~~~~~~eE~ED~eGNVm~~k~Y~dLkkQGL  196 (196)
T PF11931_consen  161 QKKRKRFEPDNEEEVEDSEGNVMSKKTYEDLKKQGL  196 (196)
T ss_dssp             ------------------------------------
T ss_pred             HhhhccCCCccceEeecCCCCCcCHHHHHHHHHccC
Confidence            999999998888999999999888888888888775

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=100.00  E-value=7.4e-67  Score=511.07  Aligned_cols=220  Identities=35%  Similarity=0.590  Sum_probs=175.2

Q ss_pred             cHHHHHHhhhhccCCCCC-ChhhhcCCCCCcccchhHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q psy7416         131 TLEERAQRLFSTKGKTAL-DPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGER  209 (381)
Q Consensus       131 tl~eRA~RLf~~kg~~~l-d~slFAK~~~gKs~~~~~~~~~k~~a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~  209 (381)
                      ...+-+...+|...-... ..+||-.|+.|| .|.+...+...++..||.|++|..+|.+.+.+|++||.|++|+|+.||
T Consensus       231 ~g~~~~~~~YC~~C~r~f~~~~VFe~Hl~gK-~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER  309 (470)
T COG5188         231 EGAEWFPKVYCVKCGREFSRSKVFEYHLEGK-RHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKER  309 (470)
T ss_pred             chhhhccceeeHhhhhHhhhhHHHHHHHhhh-hhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence            344444444443333322 248999999999 677777778889999999999999999999999999999999999999


Q ss_pred             ccccccc--------------CCC--CCC--CCCCCCCCCCCCCCCCCCCCchhHHHHhhCCCceecceeccCCcccChh
Q psy7416         210 GDSEESE--------------AGD--TSD--EDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPK  271 (381)
Q Consensus       210 ~~e~~~~--------------~~~--~~~--~~~~~~ynp~~lPlg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y~Grk  271 (381)
                      .+|++-.              ++.  .+.  +|+..+|||++|||||||+|||||||||||||++|+||||||++|+||+
T Consensus       310 ~aei~~l~r~~~~~at~S~e~EGaeq~d~eQ~DE~~~~k~fdmPLG~DG~PmP~WL~klhgLd~ef~CEICgNyvy~GR~  389 (470)
T COG5188         310 KAEISLLSRRKKQPATKSSEKEGAEQVDGEQRDEHVSGKSFDMPLGPDGLPMPRWLCKLHGLDIEFECEICGNYVYYGRD  389 (470)
T ss_pred             HHHhHHHHHHhhccCCCchhhcccccccccccchhhccCcccCCCCCCCCCCchHHHHhcCCCcceeeeecccccccchH
Confidence            9986510              011  111  2677799999999999999999999999999999999999999999999


Q ss_pred             hhhhhcchhhhhhcccccCCCCCccccccccHHHHHHHHHHHHHhhhhhccCCCCCceeecCCCCcccHHHHHHHHhcCC
Q psy7416         272 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGW  351 (381)
Q Consensus       272 aFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA~~Lw~klk~~~~~~~~~~~~~~E~ED~~GNV~~qkLyedLkrQgl  351 (381)
                      +|+|||.|.||+|||+||||.+++.|++||+|.+|+.||++++.+..+-....+..+|+||.+||||++++|++|++|||
T Consensus       390 ~FdrHF~E~rHiygl~clGi~ps~vfkgIT~I~ea~~lw~~m~~~ss~~kv~~e~~~E~EDeEGNVmskkvY~dLK~qgL  469 (470)
T COG5188         390 RFDRHFEEDRHIYGLECLGIKPSRVFKGITRIGEAMKLWNRMEESSSSLKVPTEYSEEFEDEEGNVMSKKVYEDLKRQGL  469 (470)
T ss_pred             HHHhhhhhhhhhhheeeccccchHHHhhhhhHHHHHHHHHHhhhhhhhcccchhhhhhhhccccccchHHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999998763322222344555555555555554444444444

>KOG2636|consensus

Probab=99.69  E-value=2.8e-17  Score=166.46  Aligned_cols=109  Identities=45%  Similarity=0.590  Sum_probs=91.0

Q ss_pred             ChHHHHhhhhhcCCCC--CCChhhhhccCCCcccchhHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhh
Q psy7416           1 TLEERAQRLFSTKGKT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGE   78 (381)
Q Consensus         1 tl~eraqrlf~tk~~~--~l~~~~~ak~~~~~~~~~~~~~k~k~IA~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~E   78 (381)
                      |+.+||+|+|+|+|++  +|++++|+|++..+ ++.....++++||+.|++|++++.+|+++|.+|++||+||||+|+.|
T Consensus       272 t~~~ra~rlf~Tk~~~l~~L~~~~~~kn~s~~-~~~~~~~~~keia~tEa~v~k~~~iL~eeR~~t~env~rKq~~ta~e  350 (497)
T KOG2636|consen  272 TLHERAQRLFSTKSKSLSHLDTKLFAKNPSKK-GHRREKERNKEIARTEALVKKLLAILAEERKATRENVVRKQARTAEE  350 (497)
T ss_pred             eecHHHHhhhhhcCcchhhhhhhhhccCcccc-hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence            7899999999999999  59999999987665 66777899999999999999999999999999999999999999999


Q ss_pred             hhcccccccCCCCCCcch-hhc-----ccccccccccC
Q psy7416          79 RGDSEESEAGDTSDEDDE-KEA-----GSVLTHVGAHL  110 (381)
Q Consensus        79 re~E~e~~s~~~~~edwe-~e~-----~~~~~~~~~~~  110 (381)
                      |+.|.++.+.+.++++.+ ++.     .-++.|+|.||
T Consensus       351 ~E~E~~eq~~~~~e~~~de~~~~ynp~~lPLGwDGkPi  388 (497)
T KOG2636|consen  351 REEEEEEQSDSDEESDDDEEELIYNPKNLPLGWDGKPI  388 (497)
T ss_pred             hhhhhhhhhccccccccchhhccCCcccCCCCCCCCcC
Confidence            988888877654333322 222     44556666655

>PF13297 Telomere_Sde2_2: Telomere stability C-terminal

Probab=99.23  E-value=4.2e-12  Score=97.64  Aligned_cols=46  Identities=70%  Similarity=0.941  Sum_probs=42.1

Q ss_pred             CCccccccHHHHHhccCCccc------------cHHHHHHhhhhccCCC--CCChhhhcC
Q psy7416         110 LDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALDPSLLAK  155 (381)
Q Consensus       110 ~dl~~~~s~~el~~lgL~~lk------------tl~eRA~RLf~~kg~~--~ld~slFAK  155 (381)
                      |||+.|+|+++|+.+|+++||            |++|||+|||+++|++  ++|+++|||
T Consensus         1 ldL~~f~sa~eLe~lGldrLK~~L~a~GLKcGGTl~ERA~RLfs~kg~~~~~~d~~l~AK   60 (60)
T PF13297_consen    1 LDLDAFSSAEELEALGLDRLKSALMALGLKCGGTLQERAARLFSVKGLPLEEIDKKLFAK   60 (60)
T ss_pred             CcchhcCCHHHHHHhCHHHHHHHHHHcCCccCCCHHHHHHHHHHhcCCChhhCCHHHhcC
Confidence            689999999999977666666            9999999999999999  999999997

>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised

Probab=98.79  E-value=4.1e-09  Score=98.52  Aligned_cols=40  Identities=55%  Similarity=0.626  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhhhhccc
Q psy7416          44 AGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSE   83 (381)
Q Consensus        44 A~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~Ere~E~   83 (381)
                      |++|++|++|+++|+++|.+|++|||||||+|++||++|.
T Consensus         1 ~~~E~~i~~~~~~L~~~~~~T~~~verk~a~T~~E~~~e~   40 (196)
T PF11931_consen    1 ARREYKIHKLCELLSEEREDTKENVERKQARTEEERQAEE   40 (196)
T ss_dssp             -HHHHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            6899999999999999999999999999999999999953

It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=98.01  E-value=2.5e-06  Score=85.75  Aligned_cols=71  Identities=20%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             HHHhhhhhcCCCC--CCChhhhhccCCCcccchhHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhhhhc
Q psy7416           4 ERAQRLFSTKGKT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGD   81 (381)
Q Consensus         4 eraqrlf~tk~~~--~l~~~~~ak~~~~~~~~~~~~~k~k~IA~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~Ere~   81 (381)
                      ..|+|.|++-.+.  |+.++.|.|+...          ...+|..|+.|.+|...|.+++.+|++||.|+||+|+.||-+
T Consensus       242 ~~C~r~f~~~~VFe~Hl~gK~H~k~~~~----------~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~a  311 (470)
T COG5188         242 VKCGREFSRSKVFEYHLEGKRHCKEGQG----------KEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKA  311 (470)
T ss_pred             HhhhhHhhhhHHHHHHHhhhhhhhhhhh----------hhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH
Confidence            3588999987777  5778877775332          356999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy7416          82 SEE   84 (381)
Q Consensus        82 E~e   84 (381)
                      |.+
T Consensus       312 ei~  314 (470)
T COG5188         312 EIS  314 (470)
T ss_pred             HhH
Confidence            876

>KOG2827|consensus

Probab=97.65  E-value=2.1e-05  Score=77.21  Aligned_cols=47  Identities=47%  Similarity=0.670  Sum_probs=41.9

Q ss_pred             cCCccccccHHHHHhccCCccc------------cHHHHHHhhhhccCCC--CCChhhhcC
Q psy7416         109 HLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALDPSLLAK  155 (381)
Q Consensus       109 ~~dl~~~~s~~el~~lgL~~lk------------tl~eRA~RLf~~kg~~--~ld~slFAK  155 (381)
                      ||+|+.|.|++.++-||+.+||            ||.+||.|||+.++.|  ++|++++++
T Consensus       261 p~~~ddf~s~~d~e~lg~e~lk~~l~~rglkcgg~l~eraarl~~~k~~~~~~~pk~~l~~  321 (322)
T KOG2827|consen  261 PLNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAK  321 (322)
T ss_pred             CccccccCCHHHHHHhhHHHHHHHHHhcCCcccccHHHHHhhhhhhcCCChhhhhHhhccC
Confidence            8999999999999966665555            9999999999999999  999999886

>PF13297 Telomere_Sde2_2: Telomere stability C-terminal

Probab=97.06  E-value=0.00033  Score=54.38  Aligned_cols=25  Identities=60%  Similarity=0.840  Sum_probs=23.6

Q ss_pred             ChHHHHhhhhhcCCCC--CCChhhhhc
Q psy7416           1 TLEERAQRLFSTKGKT--ALDPSLLAK   25 (381)
Q Consensus         1 tl~eraqrlf~tk~~~--~l~~~~~ak   25 (381)
                      ||+|||+|||+++|++  .+++++|||
T Consensus        34 Tl~ERA~RLfs~kg~~~~~~d~~l~AK   60 (60)
T PF13297_consen   34 TLQERAARLFSVKGLPLEEIDKKLFAK   60 (60)
T ss_pred             CHHHHHHHHHHhcCCChhhCCHHHhcC
Confidence            8999999999999999  499999987

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=94.85  E-value=0.0095  Score=37.27  Aligned_cols=25  Identities=24%  Similarity=0.763  Sum_probs=23.2

Q ss_pred             ecceeccCCcccChhhhhhhcchhhh
Q psy7416         257 YTCEICGNFVYKGPKAFQRHFAEWRH  282 (381)
Q Consensus       257 y~CEICGn~~Y~GrkaFe~HF~E~rH  282 (381)
                      |.|.|| +.++.++.+|..|++.-+|
T Consensus         1 ~~C~~C-~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDIC-NKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTT-TEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCC-CCCcCCHHHHHHHHCcCCC
Confidence            789999 7888899999999999887

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.76  E-value=0.087  Score=33.89  Aligned_cols=26  Identities=15%  Similarity=0.599  Sum_probs=23.7

Q ss_pred             ecceeccCCcccChhhhhhhcchhhhh
Q psy7416         257 YTCEICGNFVYKGPKAFQRHFAEWRHA  283 (381)
Q Consensus       257 y~CEICGn~~Y~GrkaFe~HF~E~rH~  283 (381)
                      |.|.+|+ ..|....+|+.|...-+|.
T Consensus         2 ~~C~~C~-k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACD-KYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTT-BBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCC-CCcCCHHHHHHHHccCCCC
Confidence            8999999 8899999999999988873

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>smart00451 ZnF_U1 U1-like zinc finger

Probab=86.29  E-value=0.4  Score=31.94  Aligned_cols=31  Identities=13%  Similarity=0.522  Sum_probs=26.2

Q ss_pred             eecceeccCCcccChhhhhhhcchhhhhhccc
Q psy7416         256 SYTCEICGNFVYKGPKAFQRHFAEWRHAHGMR  287 (381)
Q Consensus       256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmr  287 (381)
                      .|.|++|+-. +.+..++..|...++|...++
T Consensus         3 ~~~C~~C~~~-~~~~~~~~~H~~gk~H~~~~~   33 (35)
T smart00451        3 GFYCKLCNVT-FTDEISVEAHLKGKKHKKNVK   33 (35)
T ss_pred             CeEccccCCc-cCCHHHHHHHHChHHHHHHHH
Confidence            4889999874 559999999999999987654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PLN02748 tRNA dimethylallyltransferase

Probab=84.67  E-value=0.42  Score=50.65  Aligned_cols=36  Identities=31%  Similarity=0.613  Sum_probs=32.4

Q ss_pred             CCceecceeccCCcccChhhhhhhcchhhhhhcccc
Q psy7416         253 LNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRC  288 (381)
Q Consensus       253 L~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmrc  288 (381)
                      +-..|.|||||+.+..|....+.|++.-+|.+-++-
T Consensus       415 ~~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~  450 (468)
T PLN02748        415 LWTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQR  450 (468)
T ss_pred             ccccccccCCCCcccCCHHHHHHHhcchHHHHHHhH
Confidence            357899999999899999999999999999988773

>smart00355 ZnF_C2H2 zinc finger

Probab=83.64  E-value=0.46  Score=28.47  Aligned_cols=21  Identities=38%  Similarity=0.882  Sum_probs=18.5

Q ss_pred             ecceeccCCcccChhhhhhhcc
Q psy7416         257 YTCEICGNFVYKGPKAFQRHFA  278 (381)
Q Consensus       257 y~CEICGn~~Y~GrkaFe~HF~  278 (381)
                      |.|.+|| .+|.++..|.+|..
T Consensus         1 ~~C~~C~-~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECG-KVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCc-chhCCHHHHHHHHH
Confidence            7899999 67789999999976

>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.05  E-value=0.56  Score=36.17  Aligned_cols=33  Identities=30%  Similarity=0.567  Sum_probs=28.3

Q ss_pred             hHHHHhhCCCceecceeccCCcccChhhhhhhc
Q psy7416         245 YWLYKLHGLNISYTCEICGNFVYKGPKAFQRHF  277 (381)
Q Consensus       245 yWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF  277 (381)
                      .|-.=.-|-++.-+|+=||-.+-.+|..|+|-.
T Consensus        23 rwkIiRvGaDIkikC~nC~h~vm~pR~~Ferkl   55 (60)
T COG4481          23 RWKIIRVGADIKIKCENCGHSVMMPRYDFERKL   55 (60)
T ss_pred             eEEEEEecCcEEEEecCCCcEEEecHHHHHHHH
Confidence            455555699999999999999999999999854

>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein

Probab=82.71  E-value=0.32  Score=34.29  Aligned_cols=13  Identities=54%  Similarity=1.076  Sum_probs=8.0

Q ss_pred             CceecceeccCCc
Q psy7416         254 NISYTCEICGNFV  266 (381)
Q Consensus       254 ~~ey~CEICGn~~  266 (381)
                      ..-|+|++|||.+
T Consensus         4 ~~~YkC~~CGniV   16 (36)
T PF06397_consen    4 GEFYKCEHCGNIV   16 (36)
T ss_dssp             TEEEE-TTT--EE
T ss_pred             ccEEEccCCCCEE
Confidence            4579999999975

It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....

>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function

Probab=80.70  E-value=0.69  Score=39.62  Aligned_cols=17  Identities=35%  Similarity=0.911  Sum_probs=15.0

Q ss_pred             ceecceeccCCcccChh
Q psy7416         255 ISYTCEICGNFVYKGPK  271 (381)
Q Consensus       255 ~ey~CEICGn~~Y~Grk  271 (381)
                      ..++|-|||+.+|||-.
T Consensus         1 ~kWkC~iCg~~I~~gql   17 (101)
T PF09943_consen    1 KKWKCYICGKPIYEGQL   17 (101)
T ss_pred             CceEEEecCCeeeecce
Confidence            36899999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	6e-06
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	1e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 60/445 (13%), Positives = 121/445 (27%), Gaps = 154/445 (34%)

Query: 3   EERAQRLFST---KGKTALDPSLLAKSKPDKG-LKSKQQERQKEIAGLEAQ-IYKLAEQV 57
                RLF T   K +  +   +    + +   L S  +  Q++ + +    I +     
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 58  SEQRSATKDNVQRKQARGEGERGDSEESEA------GDTSDEDDEKEAG---SVLT---- 104
           ++ +   K NV R Q   +  +   E   A      G           G   + +     
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV---------LGSGKTWVALDVC 171

Query: 105 ---HVGAHLDLSAFSSWEELASLG-LDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDK 160
               V   +D   F  W    +L   +  +T+ E  Q+L        +DP+  ++S    
Sbjct: 172 LSYKVQCKMDFKIF--W---LNLKNCNSPETVLEMLQKLLYQ-----IDPNWTSRSDHSS 221

Query: 161 GLKSKQQERQKEIAGL-EAQIYK-----LAEQVSEQRSATKDNVQRKQARGEGERGDSEE 214
            +K +    Q E+  L +++ Y+     L             NVQ           +++ 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL------------LNVQ-----------NAKA 258

Query: 215 SEAGD--------TSDE---DDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICG 263
             A +        T  +   D        ++ L           +    L       +  
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----------HHSMTLTPDEVKSLLL 308

Query: 264 NFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFAN-------VTQIEDALALWEKLKAQ 316
            ++                    R   +P      N          I D LA W      
Sbjct: 309 KYL------------------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------ 344

Query: 317 KQEERWQPEQEEEFEDSLGNVVN-------RKTYEDLK--RQG-----------WQPEQE 356
              + W+    ++    + + +N       RK ++ L                 W    +
Sbjct: 345 ---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 357 EEFEDSLGNVVNRKTYEDLKRQGLL 381
            +    +           L +  L+
Sbjct: 402 SDVMVVV---------NKLHKYSLV 417

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 50/346 (14%), Positives = 98/346 (28%), Gaps = 94/346 (27%)

Query: 113 SAFSSWEELASLGLDRL---KTLEERAQRLFST---KGKTALDPSLLAKSKPDKG-LKSK 165
           S  S  E      +D +   K       RLF T   K +  +   +    + +   L S 
Sbjct: 44  SILSKEE------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 166 QQERQKEIAGLEAQ-IYKLAEQVSEQRSATKDNVQRKQ--------------ARG---EG 207
            +  Q++ + +    I +     ++ +   K NV R Q              A+    +G
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 208 ERGDSEESEAGDTSDEDDEVPYNPKN---LPLGWDGKP--IPYWLYKL-HGLNISYTCEI 261
             G  +   A D                 L L     P  +   L KL + ++ ++T   
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 262 CGNFVYKGP-----KAFQRHFAEWRHAHGMRCLGI------PNTA-HFAN-----VT--- 301
             +   K          +R      +     CL +            F       +T   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274

Query: 302 -QIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQ----------- 349
            Q+ D L+          +        +E +  L   ++ +  +DL R+           
Sbjct: 275 KQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRRLSI 332

Query: 350 -------------GWQPEQEEEFEDSLGNVVN-------RKTYEDL 375
                         W+    ++    + + +N       RK ++ L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 402

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 15/99 (15%)

Query: 7   QRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKD 66
            R F T   +  +  L+ K         K + +++     E ++++  + ++++ S T+ 
Sbjct: 299 SRWFKTS--SVFESHLVGKIH------KKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRS 350

Query: 67  NVQRKQARGEGER-------GDSEESEAGDTSDEDDEKE 98
            V+RK A    ER           E+ A D+++++  ++
Sbjct: 351 FVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQ 389

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae} Length = 402

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 15/101 (14%)

Query: 137 QRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKD 196
            R F T   +  +  L+ K         K + +++     E ++++  + ++++ S T+ 
Sbjct: 299 SRWFKTS--SVFESHLVGKIH------KKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRS 350

Query: 197 NVQRKQARGEGER-------GDSEESEAGDTSDEDDEVPYN 230
            V+RK A    ER           E+ A D+++++     +
Sbjct: 351 FVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVD 391

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	99.45
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	99.19
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	82.29
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	82.04
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	81.8
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	81.75
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	81.14
1paa_A	30	Yeast transcription factor ADR1; transcription reg	80.88
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	80.74

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=99.45  E-value=7.8e-15  Score=147.95  Aligned_cols=72  Identities=19%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             HHHhhhhhcCCCC--CCChhhhhccCCCcccchhHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhhhhc
Q psy7416           4 ERAQRLFSTKGKT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGD   81 (381)
Q Consensus         4 eraqrlf~tk~~~--~l~~~~~ak~~~~~~~~~~~~~k~k~IA~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~Ere~   81 (381)
                      .+|+|+|++.+++  ||+++.|.|+          ..+.|+||.+|++|++|+++|+++|++|++|||||||||++||++
T Consensus       296 ~~c~K~Fs~~~v~~~hL~GKkh~K~----------~~~~k~iA~~E~~I~~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~  365 (402)
T 4dgw_A          296 PFCSRWFKTSSVFESHLVGKIHKKN----------ESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMA  365 (402)
T ss_dssp             TTTTBCBSSHHHHHTTSSSHHHHHH----------HHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hhhhhhhccccccHHHhcccccchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4799999999998  6888877764          345599999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy7416          82 SEES   85 (381)
Q Consensus        82 E~e~   85 (381)
                      |.++
T Consensus       366 E~e~  369 (402)
T 4dgw_A          366 EMDI  369 (402)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9763

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=99.19  E-value=7.1e-12  Score=126.47  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=64.1

Q ss_pred             HHHHhhhhccCCCCCChhhhcCCCCCcccchhHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccc
Q psy7416         134 ERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSE  213 (381)
Q Consensus       134 eRA~RLf~~kg~~~ld~slFAK~~~gKs~~~~~~~~~k~~a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~~~e~  213 (381)
                      .+|+|+|++.       ++|..|+.|| +|.+...+.+.||++|++|++|+++|+++|++|++||+||||||++||++|+
T Consensus       296 ~~c~K~Fs~~-------~v~~~hL~GK-kh~K~~~~~k~iA~~E~~I~~l~~~L~~~~~~Tk~nVERKqa~T~~Ere~E~  367 (402)
T 4dgw_A          296 PFCSRWFKTS-------SVFESHLVGK-IHKKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRSFVERKLAFTANERMAEM  367 (402)
T ss_dssp             TTTTBCBSSH-------HHHHTTSSSH-HHHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             hhhhhhhccc-------cccHHHhccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            4667777765       5667777777 6777888889999999999999999999999999999999999999999996


Q ss_pred             c
Q psy7416         214 E  214 (381)
Q Consensus       214 ~  214 (381)
                      +
T Consensus       368 e  368 (402)
T 4dgw_A          368 D  368 (402)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=82.29  E-value=0.44  Score=27.56  Aligned_cols=22  Identities=32%  Similarity=0.901  Sum_probs=17.6

Q ss_pred             ceecceeccCCcccChhhhhhhc
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRHF  277 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~HF  277 (381)
                      ++|.|.+||. +|.-+..+.+|.
T Consensus         2 k~~~C~~C~~-~f~~~~~l~~H~   23 (30)
T 2m0d_A            2 KPYQCDYCGR-SFSDPTSKMRHL   23 (30)
T ss_dssp             CCEECTTTCC-EESCHHHHHHHH
T ss_pred             cCccCCCCCc-ccCCHHHHHHHH
Confidence            5799999995 566778888884

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=82.04  E-value=0.49  Score=27.00  Aligned_cols=21  Identities=29%  Similarity=0.743  Sum_probs=16.0

Q ss_pred             eecceeccCCcccChhhhhhhc
Q psy7416         256 SYTCEICGNFVYKGPKAFQRHF  277 (381)
Q Consensus       256 ey~CEICGn~~Y~GrkaFe~HF  277 (381)
                      +|+|.+||. +|.-+..+.+|-
T Consensus         1 ~~~C~~C~k-~f~~~~~l~~H~   21 (27)
T 1znf_A            1 XYKCGLCER-SFVEKSALSRHQ   21 (27)
T ss_dssp             -CBCSSSCC-BCSSHHHHHHHG
T ss_pred             CccCCCCCC-cCCCHHHHHHHH
Confidence            489999985 455778888885

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=81.80  E-value=0.43  Score=27.44  Aligned_cols=22  Identities=23%  Similarity=0.635  Sum_probs=17.1

Q ss_pred             ceecceeccCCcccChhhhhhhc
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRHF  277 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~HF  277 (381)
                      .+|.|.+||. +|.-+..+.+|-
T Consensus         1 ~~~~C~~C~k-~f~~~~~l~~H~   22 (29)
T 2m0f_A            1 GPLKCRECGK-QFTTSGNLKRHL   22 (29)
T ss_dssp             CCEECTTTSC-EESCHHHHHHHH
T ss_pred             CCccCCCCCC-ccCChhHHHHHH
Confidence            3699999985 566777888874

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=81.75  E-value=0.47  Score=27.48  Aligned_cols=22  Identities=14%  Similarity=0.481  Sum_probs=17.0

Q ss_pred             ceecceeccCCcccChhhhhhhc
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRHF  277 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~HF  277 (381)
                      ++|.|++||. .|.-+..+.+|-
T Consensus         1 k~~~C~~C~k-~f~~~~~l~~H~   22 (29)
T 1rik_A            1 YKFACPECPK-RFMRSDHLTLHI   22 (29)
T ss_dssp             CCEECSSSSC-EESCSHHHHHHH
T ss_pred             CCccCCCCCc-hhCCHHHHHHHH
Confidence            4699999996 455777888884

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=81.14  E-value=0.54  Score=26.91  Aligned_cols=22  Identities=14%  Similarity=0.427  Sum_probs=16.4

Q ss_pred             ceecceeccCCcccChhhhhhhc
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRHF  277 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~HF  277 (381)
                      ++|.|.+||. +|.-+..+.+|-
T Consensus         1 k~~~C~~C~~-~f~~~~~l~~H~   22 (29)
T 2m0e_A            1 KEHKCPHCDK-KFNQVGNLKAHL   22 (29)
T ss_dssp             CCCCCSSCCC-CCCTTTHHHHHH
T ss_pred             CCCcCCCCCc-ccCCHHHHHHHH
Confidence            4699999995 455677777773

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=80.88  E-value=0.52  Score=27.52  Aligned_cols=21  Identities=24%  Similarity=0.740  Sum_probs=16.4

Q ss_pred             ceecceeccCCcccChhhhhhh
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRH  276 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~H  276 (381)
                      ++|.|.+||. +|.-+..+.+|
T Consensus         1 k~~~C~~C~k-~f~~~~~l~~H   21 (30)
T 1paa_A            1 KAYACGLCNR-AFTRRDLLIRH   21 (30)
T ss_dssp             CCSBCTTTCC-BCSSSHHHHHH
T ss_pred             CCcCCcccCc-ccCChHHHHHH
Confidence            3699999986 55577788887

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=80.74  E-value=0.37  Score=27.55  Aligned_cols=21  Identities=29%  Similarity=0.719  Sum_probs=14.4

Q ss_pred             ceecceeccCCcccChhhhhhh
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRH  276 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~H  276 (381)
                      ++|.|++||.. |.-+..+.+|
T Consensus         1 kp~~C~~C~k~-f~~~~~l~~H   21 (26)
T 2lvu_A            1 KPYVCERCGKR-FVQSSQLANH   21 (26)
Confidence            46999999863 4345566666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1dxga_	36	Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}	91.83
d1dfxa2	36	Desulfoferrodoxin N-terminal domain {Desulfovibrio	90.76
d1vzia2	37	Desulfoferrodoxin N-terminal domain {Desulfoarculu	90.55
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	88.32
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	82.35

>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulforedoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=91.83  E-value=0.015  Score=38.19  Aligned_cols=13  Identities=46%  Similarity=1.119  Sum_probs=11.0

Q ss_pred             CceecceeccCCc
Q psy7416         254 NISYTCEICGNFV  266 (381)
Q Consensus       254 ~~ey~CEICGn~~  266 (381)
                      +..|+|++|||.+
T Consensus         4 ~evYkC~~CGNiV   16 (36)
T d1dxga_           4 GDVYKCELCGQVV   16 (36)
T ss_dssp             TCEEECTTTCCEE
T ss_pred             ccEEEeccCCcEE
Confidence            4579999999975

>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=90.76  E-value=0.019  Score=37.72  Aligned_cols=12  Identities=50%  Similarity=1.102  Sum_probs=10.4

Q ss_pred             ceecceeccCCc
Q psy7416         255 ISYTCEICGNFV  266 (381)
Q Consensus       255 ~ey~CEICGn~~  266 (381)
                      .-|+|++|||.+
T Consensus         5 evYkC~~CGNiV   16 (36)
T d1dfxa2           5 EVYKCTHCGNIV   16 (36)
T ss_dssp             CEEECTTTCCEE
T ss_pred             cEEEecccCcEE
Confidence            469999999975

>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]

Probab=90.55  E-value=0.021  Score=37.78  Aligned_cols=12  Identities=58%  Similarity=1.373  Sum_probs=10.4

Q ss_pred             ceecceeccCCc
Q psy7416         255 ISYTCEICGNFV  266 (381)
Q Consensus       255 ~ey~CEICGn~~  266 (381)
                      .-|+|++|||.+
T Consensus         5 evYkC~~CGNiV   16 (37)
T d1vzia2           5 QVYKCEVCGNIV   16 (37)
T ss_dssp             CEEECTTTCCEE
T ss_pred             cEEEecccCcEE
Confidence            469999999975

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.06  Score=36.31  Aligned_cols=24  Identities=29%  Similarity=0.656  Sum_probs=19.8

Q ss_pred             ceecceeccCCcccChhhhhhhcch
Q psy7416         255 ISYTCEICGNFVYKGPKAFQRHFAE  279 (381)
Q Consensus       255 ~ey~CEICGn~~Y~GrkaFe~HF~E  279 (381)
                      ++|.|-|||..- +=|..|.||-+-
T Consensus         4 KPYeC~~C~KrF-MWRDSF~RH~~~   27 (44)
T d2csha2           4 KPYECNICAKRF-MWRDSFHRHVTS   27 (44)
T ss_dssp             CCEECSSSCCEE-SCHHHHHHHHHH
T ss_pred             Cceeccchhhhh-hhHHHHHHhhhh
Confidence            689999999865 459999999653

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.35  E-value=0.13  Score=31.74  Aligned_cols=11  Identities=36%  Similarity=1.129  Sum_probs=9.2

Q ss_pred             ceecceeccCC
Q psy7416         255 ISYTCEICGNF  265 (381)
Q Consensus       255 ~ey~CEICGn~  265 (381)
                      ++|.|+|||..
T Consensus         2 kPf~C~~Cgrk   12 (28)
T d1a1ia3           2 KPFACDICGRK   12 (28)
T ss_dssp             CCEECTTTCCE
T ss_pred             CCcccchhhhh
Confidence            68999999953