Psyllid ID: psy7417

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370--
Protein Sequence
MKTDVAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFGERPGKKKDAPESPEEEEVKRDDEEEENPIYLKISDDEEEKEEENFMSNNATAEDFHPLIVEQNF
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHcccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccEEEHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcHcccHcccccccccccccccccHHHHHHHccccccccHcccHHHHHHHHHHHHHccccHHHcccEEEEEcc
Coil and Loop (DISEMBL)
mktdvagggdpefvKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEqtnkskgpnftiqrrepgltlsTAQLERNKTKEQIEEEKKIALNIrikplnvegwsIHKLQAKATELWETIVKLETDkydleerqkrqdydVSKIIInkkimpspgqgrpgfnpryvqtpnlfnnataltgkyppkiqvaskyerrvdtrsyddkkklfeggylslTKESLEKQYAEKVDQfgnrqktklpkwfgerpgkkkdapespeeeevkrddeeeenpiylkisddeeekeeenfmsnnataedfhpliveqnf
Flexible Loop (DISEMBL)
mktdvagggdpefvkrqeakssaldeQLKEYIVEWrnqrakeeedlkrlkekqakrkvmraeEEQKmaqrkkeeeerrqreveekkqrdleekrQRLEEAEKKRQAMMAALkeqtnkskgpnftiqrrepgltlstaqlernktkeqieeekkialnirikplnvegWSIHKLQAKATELWETIVKLEtdkydleerqkrqdydvskiiinkkimpspgqgrpGFNPRYVQTPNLFNnataltgkyppkiqvaskyerrvdtrsyddkkklfeggyLSLTKESLEKQYAEKvdqfgnrqktklpkwfgerpgkkkdapespeeeevkrddeeeenpiylkisddeeeKEEENFMsnnataedfhPLIVEQNF
Low Complexity Region (SEG)
MKTDVAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAkeeedlkrlkekQAKRKVMRAeeeqkmaqrkkeeeerrqreveekkqrDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNktkeqieeekkiALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFGERPGkkkdapespeeeevkrddeeeenpIYLKISDDeeekeeeNFMSNNATAEDFHPLIVEQNF
Disordered region (IsUnstruct)
******************************YIVEW*********************************************************************************************************************KIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLE******DYDVSKIIINKKI*************RYVQTPNLFNNATALTGKYPPKIQVASKY*************KLFEGGYLSL*********************************************************************************************
Disordered Region (DISOPRED)
*******************************************************************************************************************************************************************************KATELWETIVKLETDKYDLEERQK***************************************************QVASKY************************************************************************************************************PLIVE***
Disordered Region (DISEMBL)
********GDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKR**********************************************QRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFG*************************ENPIYLKISDD*********MSNNATAEDFHPLIVEQNF
Disordered Region (DISPRO)
******GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRA***************************************EKKRQ**MAALKEQ***SKGPNFTIQRREPGLTLSTAQLERN***EQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNP******NLFNN**ALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFGE**************************PIYLKIS*DEEEKEEENFMSNNATAEDFHPLIVE*NF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKTDVAGGGDPEFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSKGPNFTIQRREPGLTxxxxxxxxxxxxxxxxxxxxxALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFGERPGKKKDAPESPEEEEVKRDDEEEENPIYLKISDDEEEKEEENFMSNNATAEDFHPLIVEQNF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	372	2.2.26 [Sep-21-2011]
Q9XZ71	384	Troponin T OS=Periplaneta	N/A	N/A	0.827	0.802	0.697	1e-112
P19351	397	Troponin T, skeletal musc	yes	N/A	0.801	0.750	0.664	3e-96
Q27371	405	Troponin T OS=Caenorhabdi	no	N/A	0.591	0.543	0.334	2e-14
P02641	279	Troponin T, fast skeletal	yes	N/A	0.403	0.537	0.394	6e-12
P09739	259	Troponin T, fast skeletal	yes	N/A	0.403	0.579	0.388	1e-11
Q9QZ47	272	Troponin T, fast skeletal	no	N/A	0.403	0.551	0.358	2e-11
Q8MKI3	271	Troponin T, fast skeletal	no	N/A	0.403	0.553	0.388	2e-11
P45378	269	Troponin T, fast skeletal	no	N/A	0.446	0.617	0.357	2e-10
Q75NG9	271	Troponin T, fast skeletal	yes	N/A	0.395	0.542	0.389	4e-08
P12620	263	Troponin T, fast skeletal	yes	N/A	0.395	0.558	0.341	2e-07

>sp|Q9XZ71|TNNT_PERAM Troponin T OS=Periplaneta americana GN=TNT PE=2 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/321 (69%), Positives = 263/321 (81%), Gaps = 13/321 (4%)

Query: 9   GDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMA 68
           GDPEFVKRQE KSSALDEQLKEYI EWR QRAKEEEDLK+LK+KQ+KRKVMRA+EE++MA
Sbjct: 31  GDPEFVKRQEQKSSALDEQLKEYIAEWRKQRAKEEEDLKKLKDKQSKRKVMRADEEKRMA 90

Query: 69  QRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 128
           +RKK+EEERR RE+EEKKQRD+EEKR+RLEEAEKKRQAMM ALKEQ  + KGPNFTIQ++
Sbjct: 91  ERKKQEEERRVREIEEKKQRDIEEKRRRLEEAEKKRQAMMQALKEQ-KQQKGPNFTIQKK 149

Query: 129 EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 188
           +P   +S+AQ+ERNKTKEQ+EEEKKI+L+ RIKPL +E  ++ KL+ KATELW+ IVKLE
Sbjct: 150 DPSFNMSSAQIERNKTKEQLEEEKKISLSFRIKPLEIENLNVDKLKVKATELWDAIVKLE 209

Query: 189 TDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPP 248
           T+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGKYPP
Sbjct: 210 TEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDP------------EALTGKYPP 257

Query: 249 KIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFG 308
           KIQVASKYERRVDTRSYDDKKKLFEGG+ +L+ ES EK +  K + F NR K+KLPKWFG
Sbjct: 258 KIQVASKYERRVDTRSYDDKKKLFEGGWATLSSESNEKVWKSKYELFANRSKSKLPKWFG 317

Query: 309 ERPGKKKDAPESPEEEEVKRD 329
           ERPGKKK  PESPEEEEVK D
Sbjct: 318 ERPGKKKGDPESPEEEEVKAD 338

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.
Periplaneta americana (taxid: 6978)

>sp|P19351|TNNT_DROME Troponin T, skeletal muscle OS=Drosophila melanogaster GN=up PE=1 SV=3

 Score =  352 bits (903), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 208/313 (66%), Positives = 247/313 (78%), Gaps = 15/313 (4%)

Query: 3   TDVAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAE 62
           T   G GDPEF+KRQ+ K S LD+QLKEYI EWR QR+KEE++LK+LKEKQAKRKV RAE
Sbjct: 28  TPAEGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKEEDELKKLKEKQAKRKVTRAE 87

Query: 63  EEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN 122
           EEQKMAQRKKEEEERR RE EEKKQR++EEKR RLEEAEKKRQAM+ A+K++    KGPN
Sbjct: 88  EEQKMAQRKKEEEERRVREAEEKKQREIEEKRMRLEEAEKKRQAMLQAMKDKDK--KGPN 145

Query: 123 FTIQRREPG-LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELW 181
           FTI +++ G L LS+A +ERNKTKEQ+EEEKKI+L+ RIKPL +EG+   KL+ KA ELW
Sbjct: 146 FTIAKKDAGVLGLSSAAMERNKTKEQLEEEKKISLSFRIKPLAIEGFGEAKLREKAQELW 205

Query: 182 ETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATA 241
           E IVKLET+KYDLEERQKRQDYD+ ++   +K        + G +P             A
Sbjct: 206 ELIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDP------------EA 253

Query: 242 LTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKT 301
           LTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGG+  ++K+S EK + EK +Q+  RQK+
Sbjct: 254 LTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGWDEISKDSNEKIWNEKKEQYTGRQKS 313

Query: 302 KLPKWFGERPGKK 314
           KLPKWFGERPGKK
Sbjct: 314 KLPKWFGERPGKK 326

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Drosophila melanogaster (taxid: 7227)

>sp|Q27371|TNNT_CAEEL Troponin T OS=Caenorhabditis elegans GN=mup-2 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 135/236 (57%), Gaps = 16/236 (6%)

Query: 43  EEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEK 102
           E++L+ LKEKQ KR+  R E+E++ A+R+++++ERR++E +E+K +   EK ++ EE  +
Sbjct: 97  EQELRELKEKQEKRRAEREEDERQFAERRRQDDERRRKEEDERKAKADAEKIRKNEEKVR 156

Query: 103 KRQAMMAALKEQTNKSKGPNFTIQRR--EPGLTLSTAQLERNK---TKEQIEEEKKIALN 157
           ++Q M  A   +     G NFT+  +  +     + AQ +  K   +KEQ+E+ K+  L 
Sbjct: 157 RQQMMAGAFNGRVEAGAGRNFTVASKGDQAAQFGNLAQAKGGKDVMSKEQMEDAKRNFLA 216

Query: 158 IRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPS 217
              +  +V G   + L+ +   L   IVKLE +KYDLE+R++RQDYD+ ++   ++    
Sbjct: 217 AVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMKELHERQRQAAR 276

Query: 218 PGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDDKKKLFE 273
               + G +P             A +  +PPKI  ASK++R+ D RSY D++ LFE
Sbjct: 277 NKALKKGLDPE-----------EAASSVHPPKITTASKFDRQTDRRSYGDRRYLFE 321

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to muscle actomyosin ATPase activity.

Caenorhabditis elegans (taxid: 6239)

>sp|P02641|TNNT3_RABIT Troponin T, fast skeletal muscle OS=Oryctolagus cuniculus GN=TNNT3 PE=1 SV=4

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 101/170 (59%), Gaps = 20/170 (11%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A++   E ER+ R  EEK +R+ E+ ++R E
Sbjct: 103 RKKEEEELVALKERIEKRRAERAEQQRIRAEK---ERERQNRLAEEKARREEEDAKRRAE 159

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           E  KK++A+          S G N++         L+ A  +R K +   E +KKI L  
Sbjct: 160 EDLKKKKAL---------SSMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAE 202

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
           R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD+  +
Sbjct: 203 RRKPLNIDHLSDEKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDIMNV 252

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Oryctolagus cuniculus (taxid: 9986)

>sp|P09739|TNNT3_RAT Troponin T, fast skeletal muscle OS=Rattus norvegicus GN=Tnnt3 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 102/170 (60%), Gaps = 20/170 (11%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A++   E ER+ R  EEK +R+ E+ ++R E
Sbjct: 83  RKKEEEELIALKERIEKRRAERAEQQRIRAEK---ERERQNRLAEEKARREEEDAKRRAE 139

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           +  KK++A+          S G N++         L+ A  +R K +   E +KKI L  
Sbjct: 140 DDLKKKKAL---------SSMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAE 182

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
           R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct: 183 RRKPLNIDHLSDDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITTL 232

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9QZ47|TNNT3_MOUSE Troponin T, fast skeletal muscle OS=Mus musculus GN=Tnnt3 PE=1 SV=3

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 20/170 (11%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A++++E + R   E   +++ D    ++R E
Sbjct: 96  RKKEEEELIALKERIEKRRAERAEQQRIRAEKEREPQNRLAEEKARREEEDA---KRRAE 152

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           +  KK++A+          S G N++         L+ A  +R K +   E +KKI L  
Sbjct: 153 DDMKKKKAL---------SSMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAE 195

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
           R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct: 196 RRKPLNIDHLSDDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITTL 245

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Mus musculus (taxid: 10090)

>sp|Q8MKI3|TNNT3_BOVIN Troponin T, fast skeletal muscle OS=Bos taurus GN=Tnnt3 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 101/170 (59%), Gaps = 20/170 (11%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A++   E ER+ R  EEK +R+ E+ ++R E
Sbjct: 95  RKKEEEELVALKERIEKRRAERAEQQRIRAEK---ERERQNRLAEEKARREEEDAKRRAE 151

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           +  KK++A+          S G N++         L+ A  +R K K+   E KK  L  
Sbjct: 152 DDLKKKKAL---------SSMGANYSS-------YLAKADQKRGK-KQTAREMKKKVLAE 194

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
           R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct: 195 RRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEYGEKLKRQKYDITNL 244

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Bos taurus (taxid: 9913)

>sp|P45378|TNNT3_HUMAN Troponin T, fast skeletal muscle OS=Homo sapiens GN=TNNT3 PE=1 SV=3

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 69/193 (35%), Positives = 108/193 (55%), Gaps = 27/193 (13%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A++   E ER+ R  EEK +R+ E+ ++R E
Sbjct: 93  RKKEEEELVALKERIEKRRAERAEQQRIRAEK---ERERQNRLAEEKARREEEDAKRRAE 149

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           +  KK++A+          S G N++         L+ A  +R K +   E +KKI L  
Sbjct: 150 DDLKKKKAL---------SSMGANYSS-------YLAKADQKRGKKQTAREMKKKI-LAE 192

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIII-------N 211
           R KPLN++     KL+ KA ELWET+ +LE DK++  E+ KRQ YD++ +         +
Sbjct: 193 RRKPLNIDHLGEDKLRDKAKELWETLHQLEIDKFEFGEKLKRQKYDITTLRSRIDQAQKH 252

Query: 212 KKIMPSPGQGRPG 224
            K   +P +G+ G
Sbjct: 253 SKKAGTPAKGKVG 265

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Homo sapiens (taxid: 9606)

>sp|Q75NG9|TNNT3_PIG Troponin T, fast skeletal muscle OS=Sus scrofa GN=TNNT3 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 97/167 (58%), Gaps = 20/167 (11%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A++   E ER+ R  EEK +R+ EE ++R E
Sbjct: 95  RKKEEEELVALKERIEKRRAERAEQQRIRAEK---ERERQNRLAEEKARREEEEAKRRAE 151

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           +  KK++A+          S G N++         L+ A  +R K K+   E KK  L  
Sbjct: 152 DDLKKKKAL---------SSMGANYSS-------YLAKADQKRGK-KQTAREMKKKVLAE 194

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
           R KPLN++  S  KL+ KA ELW+ + +LE DK++  E+ KRQ YD+
Sbjct: 195 RRKPLNIDHLSEDKLRDKAKELWDALYQLEIDKFEYGEKLKRQKYDI 241

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Sus scrofa (taxid: 9823)

>sp|P12620|TNNT3_CHICK Troponin T, fast skeletal muscle isoforms OS=Gallus gallus GN=TNNT3 PE=1 SV=3

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 94/167 (56%), Gaps = 20/167 (11%)

Query: 39  RAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLE 98
           R KEEE+L  LKE+  KR+  RAE+++  A+++KE + R   E   +++ D + K    E
Sbjct: 89  RRKEEEELVALKERIEKRRAERAEQQRIRAEKEKERQARLAEEKARREEEDAKRK---AE 145

Query: 99  EAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNI 158
           +  KK++A+          S G +++         L+ A  +R K K+   E KK  L  
Sbjct: 146 DDLKKKKALS---------SMGASYSS-------YLAKADQKRGK-KQTARETKKKVLAE 188

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++
Sbjct: 189 RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEI 235

Troponin T is the tropomyosin-binding subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
328708479	376	PREDICTED: troponin T-like isoform 2 [Ac	0.817	0.808	0.734	1e-115
328708481	385	PREDICTED: troponin T-like isoform 3 [Ac	0.814	0.787	0.736	1e-115
193587311	370	PREDICTED: troponin T-like isoform 1 [Ac	0.817	0.821	0.734	1e-115
328708484	379	PREDICTED: troponin T-like isoform 4 [Ac	0.814	0.799	0.736	1e-115
219893742	359	troponin isoform 1, TpnT1 [Lethocerus in	0.854	0.885	0.701	1e-113
219893746	376	troponin isoform 3, TpnT3 [Lethocerus in	0.852	0.843	0.703	1e-113
48428564	384	RecName: Full=Troponin T; Short=TnT gi|4	0.827	0.802	0.697	1e-110
91076896	383	PREDICTED: similar to upheld CG7107-PG i	0.795	0.772	0.692	1e-104
225346689	358	troponin T transcript variant B [Bombyx	0.860	0.893	0.668	1e-103
347967671	361	AGAP002350-PA [Anopheles gambiae str. PE	0.833	0.858	0.68	1e-103

>gi|328708479|ref|XP_003243701.1| PREDICTED: troponin T-like isoform 2 [Acyrthosiphon pisum]

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/316 (73%), Positives = 269/316 (85%), Gaps = 12/316 (3%)

Query: 6   AGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQ 65
            G GDPEFVKRQE KSSALDEQLKEYI EWR QR+KEE+DLK+LKEKQAKRKVMRAEEE+
Sbjct: 15  TGDGDPEFVKRQELKSSALDEQLKEYIQEWRKQRSKEEDDLKKLKEKQAKRKVMRAEEEK 74

Query: 66  KMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 125
           +MA+RKK+EEERRQREVEEKKQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI
Sbjct: 75  RMAERKKQEEERRQREVEEKKQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 134

Query: 126 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 185
            ++E  L++++AQLERNKT+EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+
Sbjct: 135 SKKEGALSMTSAQLERNKTREQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQII 194

Query: 186 KLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGK 245
           KLET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGK
Sbjct: 195 KLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPE------------ALTGK 242

Query: 246 YPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPK 305
           YPPKIQVASKYERRVDTRSYDDKKKLFEGGY+  TKES+EKQ+ EK DQFG R K +LPK
Sbjct: 243 YPPKIQVASKYERRVDTRSYDDKKKLFEGGYMETTKESMEKQWTEKSDQFGGRAKGRLPK 302

Query: 306 WFGERPGKKKDAPESP 321
           WFGERPGKKKD P++P
Sbjct: 303 WFGERPGKKKDDPDTP 318

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708481|ref|XP_003243702.1| PREDICTED: troponin T-like isoform 3 [Acyrthosiphon pisum]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/315 (73%), Positives = 269/315 (85%), Gaps = 12/315 (3%)

Query: 7   GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
           G GDPEFVKRQE KSSALDEQLKEYI EWR QR+KEE+DLK+LKEKQAKRKVMRAEEE++
Sbjct: 25  GDGDPEFVKRQELKSSALDEQLKEYIQEWRKQRSKEEDDLKKLKEKQAKRKVMRAEEEKR 84

Query: 67  MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
           MA+RKK+EEERRQREVEEKKQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI 
Sbjct: 85  MAERKKQEEERRQREVEEKKQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTIS 144

Query: 127 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 186
           ++E  L++++AQLERNKT+EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+K
Sbjct: 145 KKEGALSMTSAQLERNKTREQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQIIK 204

Query: 187 LETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKY 246
           LET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGKY
Sbjct: 205 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPE------------ALTGKY 252

Query: 247 PPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKW 306
           PPKIQVASKYERRVDTRSYDDKKKLFEGGY+  TKES+EKQ+ EK DQFG R K +LPKW
Sbjct: 253 PPKIQVASKYERRVDTRSYDDKKKLFEGGYMETTKESMEKQWTEKSDQFGGRAKGRLPKW 312

Query: 307 FGERPGKKKDAPESP 321
           FGERPGKKKD P++P
Sbjct: 313 FGERPGKKKDDPDTP 327

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193587311|ref|XP_001950442.1| PREDICTED: troponin T-like isoform 1 [Acyrthosiphon pisum]

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/316 (73%), Positives = 269/316 (85%), Gaps = 12/316 (3%)

Query: 6   AGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQ 65
            G GDPEFVKRQE KSSALDEQLKEYI EWR QR+KEE+DLK+LKEKQAKRKVMRAEEE+
Sbjct: 9   TGDGDPEFVKRQELKSSALDEQLKEYIQEWRKQRSKEEDDLKKLKEKQAKRKVMRAEEEK 68

Query: 66  KMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 125
           +MA+RKK+EEERRQREVEEKKQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI
Sbjct: 69  RMAERKKQEEERRQREVEEKKQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 128

Query: 126 QRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 185
            ++E  L++++AQLERNKT+EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+
Sbjct: 129 SKKEGALSMTSAQLERNKTREQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQII 188

Query: 186 KLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGK 245
           KLET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGK
Sbjct: 189 KLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPE------------ALTGK 236

Query: 246 YPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPK 305
           YPPKIQVASKYERRVDTRSYDDKKKLFEGGY+  TKES+EKQ+ EK DQFG R K +LPK
Sbjct: 237 YPPKIQVASKYERRVDTRSYDDKKKLFEGGYMETTKESMEKQWTEKSDQFGGRAKGRLPK 296

Query: 306 WFGERPGKKKDAPESP 321
           WFGERPGKKKD P++P
Sbjct: 297 WFGERPGKKKDDPDTP 312

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328708484|ref|XP_003243703.1| PREDICTED: troponin T-like isoform 4 [Acyrthosiphon pisum]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/315 (73%), Positives = 269/315 (85%), Gaps = 12/315 (3%)

Query: 7   GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
           G GDPEFVKRQE KSSALDEQLKEYI EWR QR+KEE+DLK+LKEKQAKRKVMRAEEE++
Sbjct: 19  GDGDPEFVKRQELKSSALDEQLKEYIQEWRKQRSKEEDDLKKLKEKQAKRKVMRAEEEKR 78

Query: 67  MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
           MA+RKK+EEERRQREVEEKKQ+D+EEKR+RLEEAEKKRQAMMAALKEQTNKSKGPNFTI 
Sbjct: 79  MAERKKQEEERRQREVEEKKQKDIEEKRKRLEEAEKKRQAMMAALKEQTNKSKGPNFTIS 138

Query: 127 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 186
           ++E  L++++AQLERNKT+EQIEEEKKI+L+ RIKPLN+EG+S+ KLQ KATELW+ I+K
Sbjct: 139 KKEGALSMTSAQLERNKTREQIEEEKKISLSFRIKPLNIEGFSVQKLQFKATELWDQIIK 198

Query: 187 LETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKY 246
           LET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGKY
Sbjct: 199 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPE------------ALTGKY 246

Query: 247 PPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKW 306
           PPKIQVASKYERRVDTRSYDDKKKLFEGGY+  TKES+EKQ+ EK DQFG R K +LPKW
Sbjct: 247 PPKIQVASKYERRVDTRSYDDKKKLFEGGYMETTKESMEKQWTEKSDQFGGRAKGRLPKW 306

Query: 307 FGERPGKKKDAPESP 321
           FGERPGKKKD P++P
Sbjct: 307 FGERPGKKKDDPDTP 321

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219893742|emb|CAP72280.1| troponin isoform 1, TpnT1 [Lethocerus indicus]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/332 (70%), Positives = 275/332 (82%), Gaps = 14/332 (4%)

Query: 6   AGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQ 65
           +G GDPEFVKRQEAKSSALDEQLK+YI EWR QRA+EEEDLKRLKEKQAKRKVMRAEEE+
Sbjct: 7   SGDGDPEFVKRQEAKSSALDEQLKDYIAEWRKQRAREEEDLKRLKEKQAKRKVMRAEEEK 66

Query: 66  KMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 125
           +MA+RKK+EEERR REVEEKKQRD+EEKR+RLEEAEKKRQAMMAALK+Q+ KSKGPNFTI
Sbjct: 67  RMAERKKQEEERRIREVEEKKQRDIEEKRRRLEEAEKKRQAMMAALKDQS-KSKGPNFTI 125

Query: 126 QRREPGLT-LSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETI 184
            +++ G+T LS+AQLERNKTKEQ+EEEK+I+L+IRIKPLN++  ++ +L+ KATELWE I
Sbjct: 126 SKKDTGITNLSSAQLERNKTKEQLEEEKRISLSIRIKPLNIDNLNLDRLRLKATELWECI 185

Query: 185 VKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTG 244
           VKLET+KYDLEERQKRQ+YD+ ++   +K        + G +P             ALTG
Sbjct: 186 VKLETEKYDLEERQKRQEYDLKELEERQKQQLRHKALKKGLDP------------EALTG 233

Query: 245 KYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLP 304
           KYPPKIQVASKYERRVDTRSYDDKKKLFEGG+ +L  E LEK +  + +QF  R+  KLP
Sbjct: 234 KYPPKIQVASKYERRVDTRSYDDKKKLFEGGWDTLISEDLEKIWKARYEQFTKRKHAKLP 293

Query: 305 KWFGERPGKKKDAPESPEEEEVKRDDEEEENP 336
           KWFGERPGKKKDAPESPEEEEVK   ++E  P
Sbjct: 294 KWFGERPGKKKDAPESPEEEEVKAPADDELEP 325

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|219893746|emb|CAP72282.1| troponin isoform 3, TpnT3 [Lethocerus indicus]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/331 (70%), Positives = 274/331 (82%), Gaps = 14/331 (4%)

Query: 7   GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
           G GDPEFVKRQEAKSSALDEQLK+YI EWR QRA+EEEDLKRLKEKQAKRKVMRAEEE++
Sbjct: 25  GDGDPEFVKRQEAKSSALDEQLKDYIAEWRKQRAREEEDLKRLKEKQAKRKVMRAEEEKR 84

Query: 67  MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
           MA+RKK+EEERR REVEEKKQRD+EEKR+RLEEAEKKRQAMMAALK+Q+ KSKGPNFTI 
Sbjct: 85  MAERKKQEEERRIREVEEKKQRDIEEKRRRLEEAEKKRQAMMAALKDQS-KSKGPNFTIS 143

Query: 127 RREPGLT-LSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIV 185
           +++ G+T LS+AQLERNKTKEQ+EEEK+I+L+IRIKPLN++  ++ +L+ KATELWE IV
Sbjct: 144 KKDTGITNLSSAQLERNKTKEQLEEEKRISLSIRIKPLNIDNLNLDRLRLKATELWECIV 203

Query: 186 KLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGK 245
           KLET+KYDLEERQKRQ+YD+ ++   +K        + G +P             ALTGK
Sbjct: 204 KLETEKYDLEERQKRQEYDLKELEERQKQQLRHKALKKGLDP------------EALTGK 251

Query: 246 YPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPK 305
           YPPKIQVASKYERRVDTRSYDDKKKLFEGG+ +L  E LEK +  + +QF  R+  KLPK
Sbjct: 252 YPPKIQVASKYERRVDTRSYDDKKKLFEGGWDTLISEDLEKIWKARYEQFTKRKHAKLPK 311

Query: 306 WFGERPGKKKDAPESPEEEEVKRDDEEEENP 336
           WFGERPGKKKDAPESPEEEEVK   ++E  P
Sbjct: 312 WFGERPGKKKDAPESPEEEEVKAPADDELEP 342

Source: Lethocerus indicus

Species: Lethocerus indicus

Genus: Lethocerus

Family: Belostomatidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48428564|sp|Q9XZ71.1|TNNT_PERAM RecName: Full=Troponin T; Short=TnT gi|4928474|gb|AAD33603.1|AF133520_1 troponin T [Periplaneta americana]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/321 (69%), Positives = 263/321 (81%), Gaps = 13/321 (4%)

Query: 9   GDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMA 68
           GDPEFVKRQE KSSALDEQLKEYI EWR QRAKEEEDLK+LK+KQ+KRKVMRA+EE++MA
Sbjct: 31  GDPEFVKRQEQKSSALDEQLKEYIAEWRKQRAKEEEDLKKLKDKQSKRKVMRADEEKRMA 90

Query: 69  QRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 128
           +RKK+EEERR RE+EEKKQRD+EEKR+RLEEAEKKRQAMM ALKEQ  + KGPNFTIQ++
Sbjct: 91  ERKKQEEERRVREIEEKKQRDIEEKRRRLEEAEKKRQAMMQALKEQ-KQQKGPNFTIQKK 149

Query: 129 EPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLE 188
           +P   +S+AQ+ERNKTKEQ+EEEKKI+L+ RIKPL +E  ++ KL+ KATELW+ IVKLE
Sbjct: 150 DPSFNMSSAQIERNKTKEQLEEEKKISLSFRIKPLEIENLNVDKLKVKATELWDAIVKLE 209

Query: 189 TDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPP 248
           T+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGKYPP
Sbjct: 210 TEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDP------------EALTGKYPP 257

Query: 249 KIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKWFG 308
           KIQVASKYERRVDTRSYDDKKKLFEGG+ +L+ ES EK +  K + F NR K+KLPKWFG
Sbjct: 258 KIQVASKYERRVDTRSYDDKKKLFEGGWATLSSESNEKVWKSKYELFANRSKSKLPKWFG 317

Query: 309 ERPGKKKDAPESPEEEEVKRD 329
           ERPGKKK  PESPEEEEVK D
Sbjct: 318 ERPGKKKGDPESPEEEEVKAD 338

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076896|ref|XP_976237.1| PREDICTED: similar to upheld CG7107-PG isoform 8 [Tribolium castaneum]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/309 (69%), Positives = 252/309 (81%), Gaps = 13/309 (4%)

Query: 7   GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
           G GDPEF+KRQ+ K S LDEQL+EYI EWR QRAKEE++LK+LKEKQAKRK+ RAEEE+K
Sbjct: 33  GAGDPEFIKRQDQKRSDLDEQLREYITEWRKQRAKEEDELKKLKEKQAKRKISRAEEERK 92

Query: 67  MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
           MA+RKK+EEERR RE+EEKKQRD+EEKRQRLEEAEKKRQAMM ALK+Q NK+KGPNFTI 
Sbjct: 93  MAERKKQEEERRIREIEEKKQRDIEEKRQRLEEAEKKRQAMMQALKDQ-NKNKGPNFTIT 151

Query: 127 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 186
           +R+    LS AQLERNKTKEQ+EEEKKI+L+IRIKPL ++  S+ KL+ KA ELW+ IVK
Sbjct: 152 KRDASSNLSAAQLERNKTKEQLEEEKKISLSIRIKPLVLDNLSVDKLREKAQELWDCIVK 211

Query: 187 LETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKY 246
           LET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGKY
Sbjct: 212 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDP------------EALTGKY 259

Query: 247 PPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKW 306
           PPKIQVASKYERRVDTRSYDDKKKLFEGGY  +TKE+ EK + +K+ QF +RQK+KLPKW
Sbjct: 260 PPKIQVASKYERRVDTRSYDDKKKLFEGGYEEITKETNEKLWKDKIGQFDSRQKSKLPKW 319

Query: 307 FGERPGKKK 315
           FGERPGKKK
Sbjct: 320 FGERPGKKK 328

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225346689|gb|ACN86367.1| troponin T transcript variant B [Bombyx mandarina]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/335 (66%), Positives = 263/335 (78%), Gaps = 15/335 (4%)

Query: 5   VAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEE 64
           +AG GDPEF+KRQ+ K S LDEQLKEYI EWR QRAKEE++LKRLKEKQAKRKV RAEEE
Sbjct: 34  IAGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKRLKEKQAKRKVSRAEEE 93

Query: 65  QKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFT 124
           +++AQ+KKEEEERR RE+EEKKQRD+EEKRQRLEEAEKKRQAM+ A+K+ +    GPNFT
Sbjct: 94  KRLAQKKKEEEERRVREIEEKKQRDIEEKRQRLEEAEKKRQAMLQAMKDASK--TGPNFT 151

Query: 125 IQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETI 184
           IQ++     LS AQLERNKTKEQ+EEEKKI+L+IRIKPL +EG S+ KL+ KA ELWE I
Sbjct: 152 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECI 211

Query: 185 VKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTG 244
           VKLET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTG
Sbjct: 212 VKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDP------------EALTG 259

Query: 245 KYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLP 304
           K+PPKIQVASKYERRVDTRSYDDKKKLFEG    L K+ LEK + E+ +QFG RQK +LP
Sbjct: 260 KHPPKIQVASKYERRVDTRSYDDKKKLFEGDLEKLNKDFLEKVWQERAEQFGGRQKARLP 319

Query: 305 KWFGERPGKKKDAPESPE-EEEVKRDDEEEENPIY 338
           KWFGERPGKKK   ESPE EE+VK + EE+E P Y
Sbjct: 320 KWFGERPGKKKGELESPEGEEDVKAEPEEDEEPQY 354

Source: Bombyx mandarina

Species: Bombyx mandarina

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967671|ref|XP_312613.5| AGAP002350-PA [Anopheles gambiae str. PEST] gi|78101790|tpg|DAA05509.1| TPA_inf: troponin T isoform 4 [Anopheles gambiae str. PEST] gi|333468351|gb|EAA44956.5| AGAP002350-PA [Anopheles gambiae str. PEST]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 221/325 (68%), Positives = 262/325 (80%), Gaps = 15/325 (4%)

Query: 7   GGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
            G DPEF+KRQ+ K S LDEQLKEYI EWR QRAKEE++LK+LK+KQAKRKV RAEEEQ+
Sbjct: 8   SGDDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAKEEDELKKLKDKQAKRKVSRAEEEQR 67

Query: 67  MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
           MAQRKKEEEERR REVEEKKQR+++EKR+RLEEAEKKRQAM+ A+K++    KGPNFTI 
Sbjct: 68  MAQRKKEEEERRVREVEEKKQREIDEKRKRLEEAEKKRQAMLQAMKDKDK--KGPNFTIT 125

Query: 127 RREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVK 186
           +++    +S AQ+ERNKTKEQ+EEEKKI+L+ RIKPL V+G S   L+A+ATELWETIVK
Sbjct: 126 KKDSSFGMSNAQMERNKTKEQLEEEKKISLSFRIKPLEVDGLSADSLRARATELWETIVK 185

Query: 187 LETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKY 246
           LET+KYDLEERQKRQDYD+ ++   +K        + G +P             ALTGKY
Sbjct: 186 LETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDP------------EALTGKY 233

Query: 247 PPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKLPKW 306
           PPKIQVASKYERRVDTRSYDDKKKLFEGG+ +L KE LEKQ+AE+ +QFG RQK+KLPKW
Sbjct: 234 PPKIQVASKYERRVDTRSYDDKKKLFEGGFDTLNKEVLEKQWAERKEQFGGRQKSKLPKW 293

Query: 307 FGERPGKKKDAPESPE-EEEVKRDD 330
           FGERPGKK   PE+PE E+EVK DD
Sbjct: 294 FGERPGKKSGDPETPEGEDEVKPDD 318

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	372
FB|FBgn0004169	397	up "upheld" [Drosophila melano	0.798	0.748	0.516	7.5e-73
WB|WBGene00006589	347	tnt-4 [Caenorhabditis elegans	0.629	0.674	0.257	6.2e-13
WB|WBGene00003495	405	mup-2 [Caenorhabditis elegans	0.537	0.493	0.267	4.2e-11
WB|WBGene00006588	1178	tnt-3 [Caenorhabditis elegans	0.451	0.142	0.292	6e-11
WB|WBGene00006587	428	tnt-2 [Caenorhabditis elegans	0.470	0.408	0.261	3.2e-10
ZFIN|ZDB-GENE-050626-97	241	tnnt2d "troponin T2d, cardiac"	0.336	0.518	0.325	1.1e-09
UNIPROTKB|F1PBY3	250	TNNT3 "Uncharacterized protein	0.298	0.444	0.344	2.6e-09
UNIPROTKB|E2RDZ8	261	TNNT3 "Uncharacterized protein	0.298	0.425	0.344	3.3e-09
UNIPROTKB|Q8MKH7	250	Tnnt3 "Uncharacterized protein	0.298	0.444	0.344	3.5e-09
UNIPROTKB|Q8MKI1	266	Tnnt3 "Troponin T fast skeleta	0.298	0.417	0.344	4.9e-09

FB|FBgn0004169 up "upheld" [Drosophila melanogaster (taxid:7227)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 161/312 (51%), Positives = 197/312 (63%)

Query:     2 KTDVAGGGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAXXXXXXXXXXXXQAKRKVMRA 61
             +T   G GDPEF+KRQ+ K S LD+QLKEYI EWR QR+            QAKRKV RA
Sbjct:    27 QTPAEGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKEEDELKKLKEKQAKRKVTRA 86

Query:    62 XXXXXXXXXXXXXXXXXXXXXXXXXXXDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGP 121
                                        ++EEKR RLEEAEKKRQAM+ A+K++  K  GP
Sbjct:    87 EEEQKMAQRKKEEEERRVREAEEKKQREIEEKRMRLEEAEKKRQAMLQAMKDKDKK--GP 144

Query:   122 NFTIQRREPG-LTLSTAQLERNXXXXXXXXXXXXALNIRIKPLNVEGWSIHKLQAKATEL 180
             NFTI +++ G L LS+A +ERN            +L+ RIKPL +EG+   KL+ KA EL
Sbjct:   145 NFTIAKKDAGVLGLSSAAMERNKTKEQLEEEKKISLSFRIKPLAIEGFGEAKLREKAQEL 204

Query:   181 WETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNAT 240
             WE IVKLET+KYDLEERQKRQDYD+ ++   +K        + G +P             
Sbjct:   205 WELIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKKGLDPE------------ 252

Query:   241 ALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQK 300
             ALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGG+  ++K+S EK + EK +Q+  RQK
Sbjct:   253 ALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGWDEISKDSNEKIWNEKKEQYTGRQK 312

Query:   301 TKLPKWFGERPG 312
             +KLPKWFGERPG
Sbjct:   313 SKLPKWFGERPG 324

GO:0048644 "muscle organ morphogenesis" evidence=IMP

GO:0030239 "myofibril assembly" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0006874 "cellular calcium ion homeostasis" evidence=IMP

GO:0046716 "muscle cell homeostasis" evidence=IMP

GO:0005865 "striated muscle thin filament" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005523 "tropomyosin binding" evidence=ISS;NAS

GO:0005861 "troponin complex" evidence=ISS;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0030240 "skeletal muscle thin filament assembly" evidence=IMP

WB|WBGene00006589 tnt-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 189 (71.6 bits), Expect = 6.2e-13, P = 6.2e-13
 Identities = 67/260 (25%), Positives = 115/260 (44%)

Query:    25 DEQ--LKEYIVEWRNQRAXXXXXXXXXXXXQAKRKVMRAXXXXXXXXXXXXXXXXXXXXX 82
             DEQ  L++Y    R++R             QA+RK+ R                      
Sbjct:    61 DEQAKLEDYEKARRSEREKEEEELEKLKEKQAQRKLAREQEEREAAERKRLDEERRQKEE 120

Query:    83 XXXXXXDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREP--GL-----TLS 135
                     EEK+++ EE  KK Q M      Q     G NF IQ++E   G+      + 
Sbjct:   121 QERRARAEEEKKRKEEEKLKKAQMMGGGFPGQQG---GRNFVIQKKEESAGVGDRFGNIV 177

Query:   136 TAQLERNXXXXXXXXXXXXALNIRIKPLNVEGWSI--HKLQAKATELWETIVKLETDKYD 193
              A+ E              A+   I+    E  +I  + ++AK  EL + I KLE  KYD
Sbjct:   178 QAKQEMGMTKEQQEEAKSVAM-AGIRKSIAEASTILPNDMKAKIKELHQRICKLEAQKYD 236

Query:   194 LEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVA 253
             LE+R +RQ+YD+ ++    + +      + G          +  + T   G++PPK+Q++
Sbjct:   237 LEKRHERQEYDLKELNERSRQVARANNAKNG---------QVSGDDTG--GRHPPKVQIS 285

Query:   254 SKYERRVDTRSYDDKKKLFE 273
             SKY+R++D R++ ++++++E
Sbjct:   286 SKYDRQIDRRNFKERRQVYE 305

GO:0006936 "muscle contraction" evidence=IGI

WB|WBGene00003495 mup-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 176 (67.0 bits), Expect = 4.2e-11, P = 4.2e-11
 Identities = 58/217 (26%), Positives = 98/217 (45%)

Query:    92 EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR--EPGLTLSTAQLERNXXXXXXX 149
             EK ++ EE  +++Q M  A   +     G NFT+  +  +     + AQ +         
Sbjct:   146 EKIRKNEEKVRRQQMMAGAFNGRVEAGAGRNFTVASKGDQAAQFGNLAQAKGGKDVMSKE 205

Query:   150 XXXXXALNIRI---KPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVS 206
                    N      +  +V G   + L+ +   L   IVKLE +KYDLE+R++RQDYD+ 
Sbjct:   206 QMEDAKRNFLAAVCRVQDVSGLLPNDLKERIRGLHARIVKLEAEKYDLEKRRERQDYDMK 265

Query:   207 KIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYD 266
             ++   ++        + G +P             A +  +PPKI  ASK++R+ D RSY 
Sbjct:   266 ELHERQRQAARNKALKKGLDPE-----------EAASSVHPPKITTASKFDRQTDRRSYG 314

Query:   267 DKKKLFEGGYLSLTKESLEKQYAEKVDQFGNRQKTKL 303
             D++ LFE       + SL +       ++G +Q  +L
Sbjct:   315 DRRYLFENPEEE-KQASLVRGTGRPPAEWGRKQNEEL 350

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0007526 "larval somatic muscle development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0048598 "embryonic morphogenesis" evidence=IMP

GO:0005861 "troponin complex" evidence=ISS

WB|WBGene00006588 tnt-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 181 (68.8 bits), Expect = 6.0e-11, P = 6.0e-11
 Identities = 55/188 (29%), Positives = 94/188 (50%)

Query:    91 EEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR----EPGLTLSTAQLERNXXXX 146
             +++R R EE  KK Q  ++    QT    G NFT+ ++    +    +  A+ E      
Sbjct:   969 QDRRNREEEKNKKNQ--LSGF--QTGGQGGRNFTVAKKAAQNDKFGNIVQAKQEMGMTKE 1024

Query:   147 XXXXXXXXALN-IRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
                      L  IR +  N       +L+AK  EL + I KLET+KYDLE+R +RQ+YD+
Sbjct:  1025 QQEDAKRAFLAAIRKEIPNASEVPQSELKAKIKELHQRICKLETEKYDLEKRHERQEYDM 1084

Query:   206 SKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSY 265
              ++   ++ +      + G +P  V       N      +YP K+Q+ SKY+R+VD R++
Sbjct:  1085 KELNERQRQVTRNSALKKGIDPAEV------GNT-----RYPAKVQIVSKYDRQVDRRNF 1133

Query:   266 DDKKKLFE 273
              +++ +F+
Sbjct:  1134 RERRSVFD 1141

GO:0019915 "lipid storage" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

WB|WBGene00006587 tnt-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 169 (64.5 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 50/191 (26%), Positives = 87/191 (45%)

Query:    92 EKRQRLEEAEKKRQAMMAALK-EQTNKSKGPNFTIQRREPGLT----LSTAQLERNXXXX 146
             EK ++ EE  +++Q M  +          G NFT+  +         L+           
Sbjct:   155 EKARKNEEKSRRQQMMAGSFAGAAVGAPGGKNFTVSNKGDQAANFGNLAQGAKAEGLTKE 214

Query:   147 XXXXXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVS 206
                      LN+  K  +V     + L+ +   +   IVKLE +KYDLE+R++RQ+YD+ 
Sbjct:   215 QQEDAKRAFLNVVCKAQDVSTLMPNDLKERIKGIHARIVKLEGEKYDLEKRRERQEYDLK 274

Query:   207 KIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYD 266
             ++   ++ +      + G +P             A +  +PPKI  ASK++R+ D RSY 
Sbjct:   275 ELNERQRQVARNKALKKGLDPE-----------EAASSVHPPKITTASKFDRQTDRRSYG 323

Query:   267 DKKKLFEGGYL 277
             D++ LFE  ++
Sbjct:   324 DRRYLFENPFV 334

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040017 "positive regulation of locomotion" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

ZFIN|ZDB-GENE-050626-97 tnnt2d "troponin T2d, cardiac" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 44/135 (32%), Positives = 74/135 (54%)

Query:    90 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFT-IQRREPGLTLSTAQLERNXXXXXX 148
             L E+R+R E+ E++++    A K++   +    +  IQ++  G   +  Q ER       
Sbjct:   107 LAEERERKEQEEQRKKHDEDAKKKKALTNMTHQYGGIQQKGEGRKGAKKQTEREKKKKI- 165

Query:   149 XXXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
                    L  R KPLN++  S  KL+ KATELW+ ++ LE +KYDL ++ KRQ YD++++
Sbjct:   166 -------LADRRKPLNIDHLSDDKLKDKATELWQWLMTLEAEKYDLNDKLKRQKYDINQL 218

Query:   209 IINKKIMPSP-GQGR 222
             +   K   S  G+G+
Sbjct:   219 LCRVKDHQSAKGRGK 233

GO:0005861 "troponin complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0045214 "sarcomere organization" evidence=IGI

UNIPROTKB|F1PBY3 TNNT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 41/119 (34%), Positives = 63/119 (52%)

Query:    90 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 149
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   113 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 165

Query:   150 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct:   166 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITNL 223

GO:0005861 "troponin complex" evidence=IEA

UNIPROTKB|E2RDZ8 TNNT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 155 (59.6 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 41/119 (34%), Positives = 63/119 (52%)

Query:    90 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 149
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   124 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 176

Query:   150 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct:   177 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEFGEKLKRQKYDITNL 234

GO:0005861 "troponin complex" evidence=IEA

UNIPROTKB|Q8MKH7 Tnnt3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 3.5e-09, P = 3.5e-09
 Identities = 41/119 (34%), Positives = 63/119 (52%)

Query:    90 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 149
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   113 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 165

Query:   150 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct:   166 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEYGEKLKRQKYDITNL 223

GO:0005861 "troponin complex" evidence=IEA

UNIPROTKB|Q8MKI1 Tnnt3 "Troponin T fast skeletal muscle type" [Bos taurus (taxid:9913)]

 Score = 154 (59.3 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 41/119 (34%), Positives = 63/119 (52%)

Query:    90 LEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNXXXXXXX 149
             L E++ R EE + KR+A     K++   S G N++         L+ A  +R        
Sbjct:   129 LAEEKARREEEDAKRRAEDDLKKKKALSSMGANYSSY-------LAKADQKRGKKQTARE 181

Query:   150 XXXXXALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI 208
                   L  R KPLN++  S  KL+ KA ELW+T+ +LETDK++  E+ KRQ YD++ +
Sbjct:   182 MKKK-VLAERRKPLNIDHLSEDKLRDKAKELWDTLYQLETDKFEYGEKLKRQKYDITNL 239

GO:0005861 "troponin complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19351	TNNT_DROME	No assigned EC number	0.6645	0.8010	0.7506	yes	N/A
Q9XZ71	TNNT_PERAM	No assigned EC number	0.6978	0.8279	0.8020	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	372
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-05
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	7e-05
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	5e-04
pfam07946	322	pfam07946, DUF1682, Protein of unknown function (D	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.002
TIGR02794	346	TIGR02794, tolA_full, TolA protein	0.002
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	0.002
pfam07227	446	pfam07227, DUF1423, Protein of unknown function (D	0.002
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.003
PRK12705	508	PRK12705, PRK12705, hypothetical protein; Provisio	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 45/187 (24%), Positives = 87/187 (46%), Gaps = 13/187 (6%)

Query: 17  QEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEE 76
             AK    +EQL +   E   Q+  E E   R   KQA+  + R + EQ+  + K E   
Sbjct: 619 AVAKQKQAEEQLVQANAELEEQKRAEAE--ARTALKQARLDLQRLQNEQQSLKDKLELAI 676

Query: 77  RRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ-----TNKSKGPNFTIQRREPG 131
             +++  E + R L+ + ++L E   ++QA + ALK+      T +           +  
Sbjct: 677 AERKQQAETQLRQLDAQLKQLLE---QQQAFLEALKDDFRELRTERLAKWQVVEGELDNQ 733

Query: 132 LTLSTAQLERNKT--KEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 189
           L   +A +E  +T  K +++E KK   +  +  L+V+  ++ +L+ +  EL  TI ++  
Sbjct: 734 LAQLSAAIEAARTQAKARLKELKK-QYDRELASLDVDPNTVKELKRQIEELETTIERIAV 792

Query: 190 DKYDLEE 196
            + ++ E
Sbjct: 793 RRPEVRE 799

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 33/142 (23%), Positives = 60/142 (42%), Gaps = 23/142 (16%)

Query: 28  LKEYIVEWRNQRAK-----EEEDLKRLKEK-QAKRKVMRAEEEQKMAQRKKEEEERRQRE 81
           L E I+E     AK     ++E L  L    +   +    E++ + A+   +E E+ + E
Sbjct: 499 LPENIIE----EAKKLIGEDKEKLNELIASLEELER--ELEQKAEEAEALLKEAEKLKEE 552

Query: 82  VEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLER 141
           +EEKK++  EE+ + LEEAEK+ Q  +   K++ ++       +Q+              
Sbjct: 553 LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYA---------- 602

Query: 142 NKTKEQIEEEKKIALNIRIKPL 163
              K     E +  LN   +  
Sbjct: 603 -SVKAHELIEARKRLNKANEKK 623

Length = 782

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 37/297 (12%), Positives = 95/297 (31%), Gaps = 26/297 (8%)

Query: 64   EQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNF 123
              ++ +++KE E+ +    ++    DL++  + LEE E+  +        +  + K    
Sbjct: 1108 NAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEE----KEIAKEQRLKSKTK 1163

Query: 124  TIQR--REPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELW 181
                  R+P L     + +++   +  +                +       +   +   
Sbjct: 1164 GKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGS 1223

Query: 182  ------ETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNL 235
                  E   K +       + +K      S+            +G+P   P+ V     
Sbjct: 1224 DQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQ- 1282

Query: 236  FNNATALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYLSLTKESLEKQYAEKVDQF 295
                       PP        E    ++     KK  +           +K+ +EK    
Sbjct: 1283 ---------YSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTAR 1333

Query: 296  GNRQKTKLPKWFGERPGKKKDAPESPEEEEVKRDDEEEENPIYLKISDDEEEKEEEN 352
              + KT++ +    +  +    P   + +       E+++   +  S+DE+++++E+
Sbjct: 1334 KKKSKTRVKQASASQSSRLLRRPRKKKSD----SSSEDDDDSEVDDSEDEDDEDDED 1386

Length = 1388

>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682)

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 14/72 (19%)

Query: 36  RNQRAKEEEDLKRLKEKQAKRKVMRAEEEQ-KMAQRKKEEEERRQREVEEKKQRDLEEKR 94
              R +EEE + +  E++      R EE Q K  ++KKEE E +  ++  ++QR LEEK 
Sbjct: 262 DKTREEEEEKILKAAEEE------RQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEK- 314

Query: 95  QRLEEAEKKRQA 106
                 E+K+QA
Sbjct: 315 ------ERKKQA 320

The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found. Length = 322

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 40.1 bits (95), Expect = 0.002
 Identities = 28/104 (26%), Positives = 55/104 (52%), Gaps = 11/104 (10%)

Query: 18  EAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVM--RAEEEQKMAQRKKE-- 73
           EAK    +E+ K  + E +    KE E +K+    +AK ++   R E E+++ +R+ E  
Sbjct: 30  EAKIKEAEEEAKRILEEAK----KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85

Query: 74  --EEERRQREVE-EKKQRDLEEKRQRLEEAEKKRQAMMAALKEQ 114
             E+   Q+E   ++K   LE++ + LE+ EK+ +     L+++
Sbjct: 86  KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKK 129

Length = 520

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 38  QRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKRQRL 97
           QRA E+   K L+++ A      AE+  K A++  ++ E +Q++ EE K +   E + + 
Sbjct: 83  QRAAEQARQKELEQRAA------AEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKA 136

Query: 98  EEAEKKRQAMMAALKEQTNKSK 119
           E   +K+    A  + +     
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKA 158

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 41  KEEEDLKRLKEKQAKRKVM--RAEEEQKMAQRKKEE--EERRQREVEE---KKQRDLEEK 93
           KE E LK+    +AK +V   RAE E+++ +R+ E    ERR  + EE   +K   L++K
Sbjct: 43  KEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKK 102

Query: 94  RQRLEEAEKKRQAMMAALKEQTNK 117
            + LE+ EK+       L E+  +
Sbjct: 103 EENLEKKEKELSNKEKNLDEKEEE 126

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423)

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 21/120 (17%)

Query: 13  FVKRQEAKSSALDEQLKEYIVE-----WRNQRAKEE----EDLKRLKEKQAKRKVMRAEE 63
            +K+  +   A D +L+E   E        QR K +    E + RLK+ +       A+ 
Sbjct: 316 MLKKARSALDACDRELEEKAREVSELKMERQRKKPQIDELESIVRLKQAE-------ADM 368

Query: 64  EQKMAQRKKEEEERRQREVEEKKQRDLEE-----KRQRLEEAEKKRQAMMAALKEQTNKS 118
            Q  A   + E ER QR    K ++  EE      + RL EAE++RQ +   LK Q    
Sbjct: 369 FQLKADEARREAERLQRIALAKTEKSEEEYASKYLKLRLSEAEEERQYLFEELKLQEESH 428

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.0 bits (92), Expect = 0.003
 Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 13/117 (11%)

Query: 15  KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRK---VMRAEEE--QKMAQ 69
           +  E K+   +  LKE          K +E+L+  KEK  + +   +  AE+E  Q + +
Sbjct: 530 RELEQKAEEAEALLKEA--------EKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581

Query: 70  RKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQ 126
            KKE +E  +   + +K      K   L EA K+        +++  K K     ++
Sbjct: 582 AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638

Length = 782

>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 16/169 (9%)

Query: 36  RNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEEKR- 94
           R + AKE E + +  +K+A+ K+  A  E K    + E  ++RQ    E+++   EE+R 
Sbjct: 28  RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLR-ERNQQRQEARREREELQREEERL 86

Query: 95  QRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKI 154
            + EE    R   +  L+ Q  + +              LS  +LE  + ++Q++ E   
Sbjct: 87  VQKEEQLDARAEKLDNLENQLEEREK------------ALSARELELEELEKQLDNELYR 134

Query: 155 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDY 203
              +  +        +  L A+  E     VK   ++ DLE  +K Q+ 
Sbjct: 135 VAGLTPEQARKL--LLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNI 181

Length = 508

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 28/191 (14%)

Query: 12  EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
           + ++ + A      E+L+  + E  ++  +  E+L  L+EK  + K      E+  +   
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELK------EELESLEA 358

Query: 72  KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 131
           + EE   + E  E +  +LEE+ + L     + +  +A+L  +          I+R E  
Sbjct: 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE----------IERLEA- 407

Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
             L   +  R + +++IEE  K      +K          +LQA+  EL E + +L+ + 
Sbjct: 408 -RLERLEDRRERLQQEIEELLKKLEEAELK----------ELQAELEELEEELEELQEEL 456

Query: 192 YDLEERQKRQD 202
             LEE  +   
Sbjct: 457 ERLEEALEELR 467

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	372
KOG3634|consensus	361		100.0
KOG3977|consensus	221		99.87
PF00992	132	Troponin: Troponin; InterPro: IPR001978 The tropon	99.79
KOG3634|consensus	361		99.21
PF00992	132	Troponin: Troponin; InterPro: IPR001978 The tropon	99.06
PTZ00266	1021	NIMA-related protein kinase; Provisional	96.0
KOG1029|consensus	1118		95.82
PTZ00266	1021	NIMA-related protein kinase; Provisional	95.17
KOG1029|consensus	1118		90.9
KOG1144|consensus	1064		90.73
PF11600	216	CAF-1_p150: Chromatin assembly factor 1 complex p1	90.11
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	83.9
KOG2412|consensus	591		83.65
KOG4364|consensus	811		82.08

>KOG3634|consensus

Probab=100.00  E-value=2.3e-53  Score=412.68  Aligned_cols=237  Identities=41%  Similarity=0.615  Sum_probs=204.8

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHH--HHHHhhHHHHHHHH
Q psy7417          28 LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE--EKRQRLEEAEKKRQ  105 (372)
Q Consensus        28 Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkrreee--E~rkR~EEeekKKq  105 (372)
                      |.+|++.+..+|+++|.+|..|+++|++|+.+|++.++.++++++..++|++.++++++.+...  +.+.|.+++..+|+
T Consensus        85 l~ey~~~~~~~rer~E~eL~eLkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk~r~~k~de~r~r~~Eek~Rr~  164 (361)
T KOG3634|consen   85 LGEYEDFDRIEREREEKELKELKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERKIREAKEDERRIRLEEEKSRRQ  164 (361)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888888888888888888888888888888888888888888778877777777733332  23455666677788


Q ss_pred             HHHHHHHhhhccCCCCCceeeccCCc----chhhHHHHhhhhhHHHHHHHH-HhhhhccCCCCCCCCCCHHHHHHHHHHH
Q psy7417         106 AMMAALKEQTNKSKGPNFTIQRREPG----LTLSTAQLERNKTKEQIEEEK-KIALNIRIKPLNVEGWSIHKLQAKATEL  180 (372)
Q Consensus       106 am~~a~k~~~~~~~g~nf~i~kk~~g----g~LqkAk~e~~keKeQ~eeEK-kkiLaER~kPLnIdgLsed~LrEkaKEL  180 (372)
                      +||++++..  ..+|.||||++++.+    |+++.|+++++++|+|++.+| ..+|+.|.+||||++|.+++|+++|++|
T Consensus       165 ~m~~~~~~~--~~~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdakk~~l~aiRkk~~~~~~~~e~~LkeKiKEL  242 (361)
T KOG3634|consen  165 EMMAGRFAE--DDAGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAKKKFLLAIRKKPLNISELPENDLKEKIKEL  242 (361)
T ss_pred             HHHhcCcCc--ccccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHH
Confidence            898888764  467899999999653    677778889999999999665 5566889999999999999999999999


Q ss_pred             HHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhccccc
Q psy7417         181 WETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRV  260 (372)
Q Consensus       181 h~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~~  260 (372)
                      |+|||+||++||||+.++++|+|||++|++|++|++|++++++||||           .+++++.|||+|+++||||||+
T Consensus       243 hqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~~~k~g~d~-----------~~v~g~~~p~k~~~~sk~drq~  311 (361)
T KOG3634|consen  243 HQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNSALKKGLDP-----------EEVTGRWKPPKVQISSKYDRQT  311 (361)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHHHhhcCCCh-----------hhhcCCCCCceeehhhhhhhHH
Confidence            99999999999999999999999999999999999999999999999           7999999999999999999999


Q ss_pred             cCCChhhhhhhhhcchh
Q psy7417         261 DTRSYDDKKKLFEGGYL  277 (372)
Q Consensus       261 d~rs~~drr~~fe~~~~  277 (372)
                      |+|||+||+.+|+++..
T Consensus       312 drr~~~~rr~~~~~~~~  328 (361)
T KOG3634|consen  312 DRRNFGDRRYVFDNPEA  328 (361)
T ss_pred             HhhhccchhhhhcCccc
Confidence            99999999999999853

>KOG3977|consensus

Probab=99.87  E-value=1.9e-22  Score=185.80  Aligned_cols=145  Identities=22%  Similarity=0.297  Sum_probs=127.2

Q ss_pred             chhhHHHHhhhhhHHHHHHHHHhhhhccCCCC-CCCCCCHH-HHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHH
Q psy7417         132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPL-NVEGWSIH-KLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKII  209 (372)
Q Consensus       132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPL-nIdgLsed-~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~  209 (372)
                      .+|++|...+..+....+++|.+||++|..|| |+++|+.. .|+.+|.+||.+||.||+|+|||+.+|.....+|++|+
T Consensus        50 Llm~kAaedLkqqq~~kEqErqr~LaeR~i~lp~~d~l~d~g~Lq~ly~~l~arv~~leEEkYDi~~~v~qt~~EIndLt  129 (221)
T KOG3977|consen   50 LLMQKAAEDLKQQQELKEQERQRYLAERTIPLPDVDSLDDRGLLQDLYRELHARVDALEEEKYDIEAKVTQTETEINDLT  129 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCcccchHHHHHHHHHHHHHHHHHHHhhcchhheeehhhhhHHHHH
Confidence            68899988888766667789999999998887 78877765 48999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhccccccCCChhh---hhhhhhcchhhhhHHHHHH
Q psy7417         210 INKKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDTRSYDD---KKKLFEGGYLSLTKESLEK  286 (372)
Q Consensus       210 ~RV~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~~d~rs~~d---rr~~fe~~~~~~~~~~~~~  286 (372)
                      +.|+|| ||||++                         |.+..||+|+..+++.--+.   -...|.+++++|.++..++
T Consensus       130 ikvnDL-RGKFvk-------------------------PtLkkVsks~~kf~ka~~~~k~~~k~DlRanLK~VKKed~~~  183 (221)
T KOG3977|consen  130 IKVNDL-RGKFVK-------------------------PTLKKVSKSADKFLKALLGSKHKVKMDLRANLKQVKKEDTEK  183 (221)
T ss_pred             HHHHHh-cccccC-------------------------ccHHHHHhhhHHHHHHhhccchhhhHHHHHHHHHhhhhhHHH
Confidence            999999 999998                         89999999999999885443   4445999999999998877


Q ss_pred             HHHHHHHhhhcccccCCCCccCC
Q psy7417         287 QYAEKVDQFGNRQKTKLPKWFGE  309 (372)
Q Consensus       287 ~~~~k~~~f~~r~k~~~p~w~~E  309 (372)
                      .-.       +.+|...|.|.+-
T Consensus       184 e~~-------~kkk~ek~dW~K~  199 (221)
T KOG3977|consen  184 ERP-------NKKKREKGDWRKN  199 (221)
T ss_pred             hhh-------hhhcccchhhhhc
Confidence            665       5577899999864

>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction

Probab=99.79  E-value=4.6e-20  Score=160.51  Aligned_cols=102  Identities=33%  Similarity=0.468  Sum_probs=93.4

Q ss_pred             chhhHHHHhhhhhHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHH
Q psy7417         132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIIN  211 (372)
Q Consensus       132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~R  211 (372)
                      .++.+|..++..+.++.++++.+||++||||++|+|++.++|+++|++||++|+.|++++||++.++.+++|||++|+++
T Consensus         7 L~~~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~~k~lh~ri~~leeEryd~E~kv~k~~~Ei~elk~k   86 (132)
T PF00992_consen    7 LLLLKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQELCKELHERIDKLEEERYDLEEKVAKQDYEIEELKKK   86 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHhH
Confidence            46788988999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhcccc
Q psy7417         212 KKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERR  259 (372)
Q Consensus       212 V~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~  259 (372)
                      |+|+ +|||.+                         |...-+|+|...
T Consensus        87 v~d~-rgkfkk-------------------------p~lkkvkk~~~~  108 (132)
T PF00992_consen   87 VNDL-RGKFKK-------------------------PTLKKVKKSADA  108 (132)
T ss_dssp             CCCC-CCSHCC-------------------------HHHHHHHHHHHH
T ss_pred             HHHH-cccccc-------------------------hHHHHHHHHHHH
Confidence            9999 999988                         788888888653

Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....

>KOG3634|consensus

Probab=99.21  E-value=7.2e-11  Score=116.69  Aligned_cols=211  Identities=25%  Similarity=0.283  Sum_probs=142.3

Q ss_pred             CCChhHhhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy7417           8 GGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQ   87 (372)
Q Consensus         8 ~g~~~~~KR~EKdl~el~~~Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRRaERaEqeR~raEr~k~EeERr~re~EErkr   87 (372)
                      +-|...++||+++|.+    |+.+|+.||.+|+++|++|..++.+|+.||+++|+++++|..+   +++++++.++++.+
T Consensus        90 ~~~~~~rer~E~eL~e----Lkekq~~r~~eR~~eE~e~~~rkr~~e~RR~~~aeerk~r~~k---~de~r~r~~Eek~R  162 (361)
T KOG3634|consen   90 DFDRIEREREEKELKE----LKEKQEKRKLEREEEEEELAERKRRIEERRREEAEERKIREAK---EDERRIRLEEEKSR  162 (361)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcHHHHHHHHhhHHhhhhchHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            3456778899999999    7999999999999999999999999999999999999999998   67899999999998


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCCcee-eccCCc---chhhHHHHhhhhhHHHHHHHHHhhhhc-cCCC
Q psy7417          88 RDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI-QRREPG---LTLSTAQLERNKTKEQIEEEKKIALNI-RIKP  162 (372)
Q Consensus        88 reeeE~rkR~EEeekKKqam~~a~k~~~~~~~g~nf~i-~kk~~g---g~LqkAk~e~~keKeQ~eeEKkkiLaE-R~kP  162 (372)
                      |......+....         .+.+..+++++|.+|.. +-.-++   ..+.+-+++..+ +.-....++++|+. .+++
T Consensus       163 r~~m~~~~~~~~---------~~gknftvakk~a~~~~fgn~~qak~e~~mtKeQqEdak-k~~l~aiRkk~~~~~~~~e  232 (361)
T KOG3634|consen  163 RQEMMAGRFAED---------DAGKNFTVAKKGAQNDGFGNIVQAKQEMGMTKEQQEDAK-KKFLLAIRKKPLNISELPE  232 (361)
T ss_pred             HHHHHhcCcCcc---------cccCcceeecccccchhHHHHHHHHHHhcccHHHHHHHH-HHHHHHHHhcccccccCCH
Confidence            887777666553         33334456666665521 111111   123334433332 23345678888854 4443


Q ss_pred             CCCCCCCHHHHHHHHHHH----HHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhccCC---CCCCCCCCCCCCCCCcc
Q psy7417         163 LNVEGWSIHKLQAKATEL----WETIVKLETDKYDLEERQKRQDYDVSKIIINKKIMPSP---GQGRPGFNPRYVQTPNL  235 (372)
Q Consensus       163 LnIdgLsed~LrEkaKEL----h~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL~R~---Ka~kkg~dp~~~~~~~~  235 (372)
                      =++-. -..+|-+.+-.|    |+--..++-..|||..-..+|..     ..|.+-++.|   ..|..+..|-.|+|-+-
T Consensus       233 ~~Lke-KiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq-----~~r~~~~k~g~d~~~v~g~~~p~k~~~~sk  306 (361)
T KOG3634|consen  233 NDLKE-KIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQ-----VQRNSALKKGLDPEEVTGRWKPPKVQISSK  306 (361)
T ss_pred             HHHHH-HHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHH-----HHHHHHhhcCCChhhhcCCCCCceeehhhh
Confidence            33311 122343333333    55566677889999888777643     4466666553   55667888877777766


Q ss_pred             cchhhh
Q psy7417         236 FNNATA  241 (372)
Q Consensus       236 ~~~~~a  241 (372)
                      ||--..
T Consensus       307 ~drq~d  312 (361)
T KOG3634|consen  307 YDRQTD  312 (361)
T ss_pred             hhhHHH
Confidence            665443

>PF00992 Troponin: Troponin; InterPro: IPR001978 The troponin (Tn) complex regulates Ca2+ induced muscle contraction

Probab=99.06  E-value=2.2e-10  Score=100.16  Aligned_cols=128  Identities=29%  Similarity=0.234  Sum_probs=98.0

Q ss_pred             hhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHH
Q psy7417          15 KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRK---VMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLE   91 (372)
Q Consensus        15 KR~EKdl~el~~~Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRR---aERaEqeR~raEr~k~EeERr~re~EErkrreee   91 (372)
                      |++.|+|..    ++..|+.||+++++++|.++.|.+||..+.   ..+++.+++ ...   ..+|..+.++|+-..+..
T Consensus         1 K~~lK~L~~----~kA~~el~~e~~~keeek~~~L~eri~~l~~~g~~~~eL~~~-~k~---lh~ri~~leeEryd~E~k   72 (132)
T PF00992_consen    1 KRMLKDLLL----LKAKIELHFEQRKKEEEKRRYLAERIPPLKLDGLSRAELQEL-CKE---LHERIDKLEEERYDLEEK   72 (132)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHHHHHCHHHHHHHCCCTSS--GTTSSHHHHHHH-HHH---HHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccHHHHHHH-HHH---HHHHHHHHHHHHHHHHHH
Confidence            689999999    699999999999999999999999999999   778887766 555   567888888888777766


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHhhhccCCCCCceeeccCCcchhhHHHHhhhhhHHHHH-HHHHhhhhccCCCCCCCCCCH
Q psy7417          92 EKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLSTAQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSI  170 (372)
Q Consensus        92 E~rkR~EEeekKKqam~~a~k~~~~~~~g~nf~i~kk~~gg~LqkAk~e~~keKeQ~e-eEKkkiLaER~kPLnIdgLse  170 (372)
                      ..+...|.+         .++.++.-..                      |+-+.++. ..++.+++.+..||+++|++.
T Consensus        73 v~k~~~Ei~---------elk~kv~d~r----------------------gkfkkp~lkkvkk~~~~~~~~~l~~k~~~~  121 (132)
T PF00992_consen   73 VAKQDYEIE---------ELKKKVNDLR----------------------GKFKKPTLKKVKKSADAMRRKLLGIKHKVS  121 (132)
T ss_dssp             HHHHHHHHH---------HHCCCCCCCC----------------------CSHCCHHHHHHHHHHHHHHHHHHCTTCSHH
T ss_pred             HHHhcccHH---------HHHhHHHHHc----------------------ccccchHHHHHHHHHHHHHHhhhCcccccH
Confidence            665554443         3322221111                      11134444 568899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy7417         171 HKLQAKATELW  181 (372)
Q Consensus       171 d~LrEkaKELh  181 (372)
                      .+|++.++++|
T Consensus       122 ~~lr~~lK~vk  132 (132)
T PF00992_consen  122 MDLRANLKEVK  132 (132)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHhhccC
Confidence            99999999998

Tn contains three subunits, Ca2+ binding (TnC), inhibitory (TnI), and tropomyosin binding (TnT). This family includes troponin T and troponin I. Troponin I binds to actin and troponin T binds to tropomyosin [, , ].; PDB: 1J1D_C 1MXL_I 1LXF_I 2KRD_I 1J1E_F 2L1R_B 2KGB_I 1YTZ_I 1YV0_I 1VDJ_A ....

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=96.00  E-value=0.074  Score=60.37  Aligned_cols=15  Identities=13%  Similarity=0.133  Sum_probs=7.4

Q ss_pred             chhhhhHHHHHHHHH
Q psy7417         275 GYLSLTKESLEKQYA  289 (372)
Q Consensus       275 ~~~~~~~~~~~~~~~  289 (372)
                      +.+.+.++.|...+.
T Consensus       775 ~~~~~~~~~~~~~~~  789 (1021)
T PTZ00266        775 NAKEMYKEAVNPICS  789 (1021)
T ss_pred             hHHHHHhhhccchhc
Confidence            344455555555554

>KOG1029|consensus

Probab=95.82  E-value=0.21  Score=55.66  Aligned_cols=20  Identities=15%  Similarity=0.252  Sum_probs=11.1

Q ss_pred             hhhhhcchhhhhHHHHHHHH
Q psy7417         269 KKLFEGGYLSLTKESLEKQY  288 (372)
Q Consensus       269 r~~fe~~~~~~~~~~~~~~~  288 (372)
                      -..|.+.++.|+.++.-++.
T Consensus       565 idi~n~qlkelk~~~~~q~l  584 (1118)
T KOG1029|consen  565 IDIFNNQLKELKEDVNSQQL  584 (1118)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            34566666666655444443

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=95.17  E-value=0.23  Score=56.63  Aligned_cols=8  Identities=13%  Similarity=0.505  Sum_probs=2.9

Q ss_pred             HHHHHHHh
Q psy7417          51 EKQAKRKV   58 (372)
Q Consensus        51 eRiEkRRa   58 (372)
                      +|+|+.+.
T Consensus       469 er~Erer~  476 (1021)
T PTZ00266        469 ERLERERM  476 (1021)
T ss_pred             HHHHHHHH
Confidence            33333333

>KOG1029|consensus

Probab=90.90  E-value=4.9  Score=45.43  Aligned_cols=52  Identities=25%  Similarity=0.285  Sum_probs=37.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhc
Q psy7417         164 NVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIM  215 (372)
Q Consensus       164 nIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL  215 (372)
                      ++.-+..++|+..++|+.+.+.+|--|+-.|+.+++....-...-+.|+..|
T Consensus       482 e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L  533 (1118)
T KOG1029|consen  482 ELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSEL  533 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHH
Confidence            3333345679999999999999999999999998876655444444444443

>KOG1144|consensus

Probab=90.73  E-value=2.8  Score=47.21  Aligned_cols=25  Identities=20%  Similarity=0.381  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHH
Q psy7417          46 LKRLKEKQAKRKVMRAEEEQKMAQR   70 (372)
Q Consensus        46 L~~LKeRiEkRRaERaEqeR~raEr   70 (372)
                      +.++++-.++++.++++|.|.+.|+
T Consensus       216 v~~~qe~La~~qe~eE~qkreeEE~  240 (1064)
T KOG1144|consen  216 VRAMQEALAKRQEEEERQKREEEER  240 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666777776666665554444

>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair []

Probab=90.11  E-value=14  Score=34.71  Aligned_cols=8  Identities=50%  Similarity=0.709  Sum_probs=3.1

Q ss_pred             HHHHHHHh
Q psy7417          89 DLEEKRQR   96 (372)
Q Consensus        89 eeeE~rkR   96 (372)
                      .+++.+++
T Consensus       162 keeekr~~  169 (216)
T PF11600_consen  162 KEEEKRKK  169 (216)
T ss_pred             HHHHHHhh
Confidence            33334444

P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=83.90  E-value=58  Score=36.29  Aligned_cols=36  Identities=6%  Similarity=0.149  Sum_probs=25.6

Q ss_pred             HHHHHHhhhhhcccHHHHhhhhhhhHHHHHHHHhhc
Q psy7417         180 LWETIVKLETDKYDLEERQKRQDYDVSKIIINKKIM  215 (372)
Q Consensus       180 Lh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~RV~DL  215 (372)
                      ||..|...--+-=.++-.+..++.||.+|+.+|.+|
T Consensus       620 LfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~  655 (697)
T PF09726_consen  620 LFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQL  655 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            343333333333356778889999999999999998

; GO: 0016021 integral to membrane

>KOG2412|consensus

Probab=83.65  E-value=53  Score=36.01  Aligned_cols=25  Identities=12%  Similarity=0.029  Sum_probs=16.0

Q ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHH
Q psy7417         161 KPL-NVEGWSIHKLQAKATELWETIV  185 (372)
Q Consensus       161 kPL-nIdgLsed~LrEkaKELh~rI~  185 (372)
                      +|| .|+..+...|+..-..||+-+.
T Consensus       344 ~~~~qis~~~~q~L~qI~dkl~s~~~  369 (591)
T KOG2412|consen  344 PPFSQISKSNGQVLRQIFDKLDSLFG  369 (591)
T ss_pred             CChhhhhhccHHHHHHHHHHHHHHhc
Confidence            566 6777777667666555555543

>KOG4364|consensus

Probab=82.08  E-value=39  Score=37.89  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=18.3

Q ss_pred             HHHHHhhhcccccCCCCccCCCCCC-CCCCCCCchHh
Q psy7417         289 AEKVDQFGNRQKTKLPKWFGERPGK-KKDAPESPEEE  324 (372)
Q Consensus       289 ~~k~~~f~~r~k~~~p~w~~ErpgK-k~~~~~~pe~e  324 (372)
                      ..|+=||-.   ..-|.++|--|.| +.--+++|=-.
T Consensus       480 KaKlLqF~~---NrRP~YyGTWrKKS~~VsarrPlAq  513 (811)
T KOG4364|consen  480 KAKLLQFDK---NRRPGYYGTWRKKSQVVSARRPLAQ  513 (811)
T ss_pred             HHHHhhhcc---ccCCcccccccccccccccCCcccc
Confidence            446667765   3457777776644 33344555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	372
1ytz_T	107	Crystal Structure Of Skeletal Muscle Troponin In Th		1e-04
2w49_1	90	Isometrically Contracting Insect Asynchronous Fligh		1e-04
1j1d_B	106	Crystal Structure Of The 46kda Domain Of Human Card		2e-04

>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+- Activated State Length = 107

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 156 LNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
           L  R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++
Sbjct: 30  LAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEI 79

>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 90

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++
Sbjct: 30  RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEI 76

>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac Troponin In The Ca2+ Saturated Form Length = 106

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV----SKIIINKKI 214
           R K L ++  +  +L+ KA ELW+TI  LE +K+DL+E+ K+Q Y++    ++I  N+K+
Sbjct: 33  RRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKV 92
Query: 215 MPSPGQGR 222
             + G+ +
Sbjct: 93  SKTRGKAK 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	372
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	1e-13
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	2e-13
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	1e-10
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	1e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-08
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	7e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	5e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	4e-06
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	1e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	5e-04
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	3e-04
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	6e-04

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1 Length = 107

 Score = 65.7 bits (160), Expect = 1e-13
 Identities = 26/70 (37%), Positives = 42/70 (60%)

Query: 137 AQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEE 196
              ++   K+   E KK  L  R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E
Sbjct: 11  KADQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70

Query: 197 RQKRQDYDVS 206
           + KR+ Y++ 
Sbjct: 71  QIKRKKYEIV 80

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B Length = 106

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 32/77 (41%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 131 GLTLSTAQLERNKTKEQIEEEKKIA-LNIRIKPLNVEGWSIHKLQAKATELWETIVKLET 189
           G     AQ ER   K Q E EKK   L  R K L ++  +  +L+ KA ELW+TI  LE 
Sbjct: 4   GYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEA 63

Query: 190 DKYDLEERQKRQDYDVS 206
           +K+DL+E+ K+Q Y+++
Sbjct: 64  EKFDLQEKFKQQKYEIN 80

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2 Length = 133

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
           L L  A+ E  +  E+   EK  AL+ R +PL + G    +LQ  A +L   + K++ ++
Sbjct: 22  LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81

Query: 192 YDLEERQKRQDYDV 205
           YD+E +  +   ++
Sbjct: 82  YDIEAKVTKNITEI 95

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2 Length = 180

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 21/74 (28%), Positives = 39/74 (52%)

Query: 132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
           L L  A+ E  +  E+   EK  AL+ R +PL + G    +LQ  A +L   + K++ ++
Sbjct: 22  LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEER 81

Query: 192 YDLEERQKRQDYDV 205
           YD+E +  +   ++
Sbjct: 82  YDIEAKVTKNITEI 95

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 2/153 (1%)

Query: 12   EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
                  ++  SAL++  +E+         K ++ +  L +K  +            +   
Sbjct: 851  LTPNEIDSTWSALEKAEQEHAEA-LRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYL 909

Query: 72   KEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 131
               E        + K ++LE      +  E +  + + ++  Q  +    N   +  E  
Sbjct: 910  GSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY-NGVPELTERK 968

Query: 132  LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLN 164
             T    Q    K+  +  +   +A   R++ + 
Sbjct: 969  DTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 1001

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 10/99 (10%), Positives = 27/99 (27%), Gaps = 7/99 (7%)

Query: 12   EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKE-----KQAKRKVMRAEEEQK 66
                       A  + L+ +  E ++   +   DL  +              +   ++  
Sbjct: 912  NETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF 971

Query: 67   MAQRKKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQ 105
             AQ+    +   +            E+ Q++E+      
Sbjct: 972  FAQQWTGVKSSAETYKNTLLA--ELERLQKIEDLHHHHH 1008

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 25/213 (11%), Positives = 62/213 (29%), Gaps = 15/213 (7%)

Query: 12  EFVKRQEAKSSALDEQ-----LKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQK 66
             ++ ++   S    Q      KEY    +  + +E  +L+ +      +  +   E   
Sbjct: 787 ASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFV 846

Query: 67  MAQRKKEEEERRQREVEEKKQRDL------EEKRQ-RLEEAEKKRQAMMAALKEQTNKSK 119
                   E        EK +++       E KRQ ++    +K   ++  L+       
Sbjct: 847 APAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKS 906

Query: 120 GPNFTIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATE 179
                +   E G +++  Q +    +    E + +        L++             E
Sbjct: 907 ---VYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 963

Query: 180 LWETIVKLETDKYDLEERQKRQDYDVSKIIINK 212
           L E        ++   +       +     + +
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELER 996

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 27/194 (13%), Positives = 60/194 (30%), Gaps = 7/194 (3%)

Query: 12   EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
              +  Q      L     + ++        ++     L      R +      Q   +R 
Sbjct: 841  ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900

Query: 72   KEEEERRQREVEEKKQRDLEEKRQRLE----EAEKKRQAMMAALKEQTNKSKGPNFTIQR 127
              + E ++ ++E +     ++    LE    + ++K        K    K      T   
Sbjct: 901  MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960

Query: 128  REPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKL 187
                L     +L  ++ + +    + ++L   I  L  E   +H+ Q +   + E   K 
Sbjct: 961  ETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE---LHQTQTEKKTIEEWADKY 1017

Query: 188  ETDKYDLEERQKRQ 201
            + +   L    K Q
Sbjct: 1018 KHETEQLVSELKEQ 1031

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 35/200 (17%), Positives = 73/200 (36%), Gaps = 17/200 (8%)

Query: 16   RQEAKSSALDEQLKEYIV---EWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKK 72
            R           LK  +     +R   AK E    +++ +  +       ++  +    K
Sbjct: 875  RGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVE-----RYKKLHIGLENK 929

Query: 73   EEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGL 132
              + +R+ + + K+ + L EK   LE         + +  E+   S+        R   L
Sbjct: 930  IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 133  TLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKY 192
                A+L +   + Q E++       + K         H+ +   +EL E    L+T+K 
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYK---------HETEQLVSELKEQNTLLKTEKE 1040

Query: 193  DLEERQKRQDYDVSKIIINK 212
            +L  R   Q  ++++ +  K
Sbjct: 1041 ELNRRIHDQAKEITETMEKK 1060

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 19/141 (13%), Positives = 53/141 (37%), Gaps = 8/141 (5%)

Query: 17   QEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRL----KEKQAKRKVMRAEEEQKMAQR-- 70
            Q  +  +L E++    + +  +  K   D++RL    +E +     + + +E+    R  
Sbjct: 940  QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999

Query: 71   --KKEEEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRR 128
              + + E++   E  +K + + E+    L+E     +     L  + +           +
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEK 1059

Query: 129  EPGLTLSTAQLERNKTKEQIE 149
            +        +L+ N  + + +
Sbjct: 1060 KLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 13/85 (15%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 14   VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
            + + + +   ++E   +Y  E     ++ +E    LK ++ +      ++ +++     E
Sbjct: 1000 LHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI----TE 1055

Query: 74   EEERRQREVEEKKQRDLEEKRQRLE 98
              E++  E  ++ + DL ++R R +
Sbjct: 1056 TMEKKLVEETKQLELDLNDERLRYQ 1080

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 20/189 (10%)

Query: 14   VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
            +K  E K + L E+      + + +     E  + ++ + A +K    E   +M  R +E
Sbjct: 880  LKELEQKHTQLCEEKNLLQEKLQAETELYAE-AEEMRVRLAAKKQELEEILHEMEARIEE 938

Query: 74   EEERRQREVEEKK--QRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPG 131
            EEER Q+   EKK  Q+ + +  ++LEE E  RQ +         K K     I   E  
Sbjct: 939  EEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME-- 996

Query: 132  LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDK 191
                    +  K ++ +EE                  ++ + + KA  L +   K E+  
Sbjct: 997  ----DQNNKLTKERKLLEERVSDLTT-----------NLAEEEEKAKNLTKLKNKHESMI 1041

Query: 192  YDLEERQKR 200
             +LE R K+
Sbjct: 1042 SELEVRLKK 1050

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 34/205 (16%), Positives = 88/205 (42%), Gaps = 18/205 (8%)

Query: 12   EFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
            E     E     L  + +E         A+ EE+ +R ++ QA++K M+ +      + +
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD--LEEQ 963

Query: 72   KEEEERRQREVEEKKQ------RDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTI 125
             EEEE  +++++ +K       + +E+    +E+   K       L+E+ +         
Sbjct: 964  LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

Query: 126  QRREPGLTLSTAQLER--NKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWET 183
            + +   LT    + E   ++ + ++++E+K    +             KL+ ++++L E 
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI--------KRKLEGESSDLHEQ 1075

Query: 184  IVKLETDKYDLEERQKRQDYDVSKI 208
            I +L+    +L+ +  +++ ++   
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAA 1100

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 24/193 (12%)

Query: 15   KRQEAKSSALDEQLKEY---IVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRK 71
            ++ + +    D ++K+    I+   +Q  K  ++ K L+E+ +      AEEE+K     
Sbjct: 972  QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLT 1031

Query: 72   KEEEERRQR--------EVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNF 123
            K + +            + EEK +++LE+ +++LE         +A L+ Q  + K    
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA--- 1088

Query: 124  TIQRREPGLTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWET 183
             + ++E  L  + A+LE   +++    +K   L   I            LQ         
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS----------DLQEDLESEKAA 1138

Query: 184  IVKLETDKYDLEE 196
              K E  K DL E
Sbjct: 1139 RNKAEKQKRDLSE 1151

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 46.3 bits (109), Expect = 4e-06
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 30  EYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRD 89
           E I +WR      EE  KRL+E  A  KVM  E  +K  +  +E  +R+  +VE+ K  +
Sbjct: 85  ESIRKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138

Query: 90  LEEKRQRLEEAE 101
               +   ++ +
Sbjct: 139 RIADKAFYQQPD 150

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 12/78 (15%)

Query: 37  NQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERRQREVEEKKQRDLEE-KRQ 95
           ++  +E E +++ +E+Q KR            Q      +  ++E  EK ++DLEE  ++
Sbjct: 78  DRLTQEPESIRKWREEQRKR-----------LQELDAASKVMEQEWREKAKKDLEEWNQR 126

Query: 96  RLEEAEKKRQAMMAALKE 113
           + E+ EK +     A K 
Sbjct: 127 QSEQVEKNKINNRIADKA 144

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 10  DPEFVK----RQEAKSSALDEQLKEYIVEWRNQRAKEEED-LKRLKEKQAKRKV-MRAEE 63
           +PE ++     Q  +   LD   K    EWR +  K+ E+  +R  E+  K K+  R  +
Sbjct: 83  EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 64  EQKMAQRKKE 73
           +    Q   +
Sbjct: 143 KAFYQQPDAD 152

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 62/474 (13%), Positives = 133/474 (28%), Gaps = 159/474 (33%)

Query: 24  LDEQLKEY--IVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEERR--- 78
             E   +Y  I+        +  D K +++    + ++  EE   +   K          
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 79  -----------QREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPN----- 122
                      Q+ VEE  + + +     ++  +++   M     EQ ++    N     
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 123 FTIQRREPGLTLSTA--QLERN------------KT----------KEQIEEEKKIA-LN 157
           + + R +P L L  A  +L               KT          K Q + + KI  LN
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 158 IR--------IKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKR----QDY-- 203
           ++        ++ L      ++++    T   +    ++   + ++   +R    + Y  
Sbjct: 189 LKNCNSPETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 204 ------DV------------SKIII---NKKIM----------PSPGQGRPGFNPRYVQT 232
                 +V             KI++    K++            S         P   + 
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EV 303

Query: 233 PNLFNNATALTGKY---PPKIQ---------VASKYERRVDTRSY------DDKKKLFEG 274
            +L      L  +    P ++          +A      + T         D    + E 
Sbjct: 304 KSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 275 GYLSLTKESLEKQYAEKVDQFGNRQKTKLPK------WFGERPGKKKDAPESPEEEE--- 325
               L      K + +++  F       +P       WF           +  + +    
Sbjct: 362 SLNVLEPAEYRKMF-DRLSVF--PPSAHIPTILLSLIWF-----------DVIKSDVMVV 407

Query: 326 ---------VKRDDEEEENPIYLKISDDEEEKEEENFMSNNATAEDFHPLIVEQ 370
                    V++  +E    I   I  + + K E  +          H  IV+ 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEY--------ALHRSIVDH 452

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 23/139 (16%), Positives = 47/139 (33%)

Query: 17  QEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEEE 76
           Q +   A++          +++  + E++ +   E+Q       AE+ +K     +    
Sbjct: 655 QRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSM 714

Query: 77  RRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLTLST 136
             +     K + +   +  R+E      QA + A               + RE  L  + 
Sbjct: 715 AVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYAR 774

Query: 137 AQLERNKTKEQIEEEKKIA 155
           AQLE   +K Q     +  
Sbjct: 775 AQLELEVSKAQQLANVEAK 793

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 14  VKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKE 73
           V+  E       + L+  +          +E   + + ++ +++     E QK+  + + 
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699

Query: 74  EEERRQREVEEKKQRDLEEKRQRLEEAEKKRQAMMAALKEQTNKSKGPNFTIQRREPGLT 133
           E+ R++    E     +E       EAE + +A     +    ++K       + +    
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAK------LKAQALAI 753

Query: 134 LSTAQLERNKTKEQIEEEKKIALN 157
            + A+LER K   ++E     A  
Sbjct: 754 ETEAELERVKKVREMELIYARAQL 777

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 21/92 (22%), Positives = 47/92 (51%)

Query: 15  KRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEE 74
           +  +A +  L E  ++       +    +E LK+L EK    +V   +E+++    K +E
Sbjct: 497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556

Query: 75  EERRQREVEEKKQRDLEEKRQRLEEAEKKRQA 106
           +E+  +E  +K+ R ++ + Q L+   ++R+A
Sbjct: 557 QEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 25/108 (23%), Positives = 61/108 (56%), Gaps = 7/108 (6%)

Query: 16  RQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAEEEQKMAQRKKEEE 75
             ++K  +L E  +    E+  +  K+EE+++++  ++ K K    E E K A+++  E+
Sbjct: 312 DPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEK----EAELKEAEKELHEK 367

Query: 76  ERRQREVEEKKQRDLEEKRQRLEE---AEKKRQAMMAALKEQTNKSKG 120
             R +++ + +++ LE+K++ L++   A K+R+     L+ Q +++ G
Sbjct: 368 FDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGG 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	372
1ytz_T	107	Troponin T; muscle, THIN filament, actin binding,	99.96
1j1e_C	180	Troponin I, TNI; THIN filament, muscle regulation,	99.95
1j1d_B	106	Troponin T, TNT; THIN filament, muscle regulation,	99.95
1j1d_C	133	Troponin I, TNI; THIN filament, muscle regulation,	99.94
1ytz_I	182	Troponin I; muscle, THIN filament, actin binding,	99.94
2z5h_T	55	TNT, troponin T, fast skeletal muscle isoforms; co	99.42
1a2x_B	47	Troponin I; muscle contraction regulation, complex	84.4

>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1

Probab=99.96  E-value=1.1e-29  Score=213.59  Aligned_cols=93  Identities=31%  Similarity=0.510  Sum_probs=83.8

Q ss_pred             CCCCceeeccCCcchhhHHHHhhhhhHHHHHH-HHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHH
Q psy7417         119 KGPNFTIQRREPGLTLSTAQLERNKTKEQIEE-EKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER  197 (372)
Q Consensus       119 ~g~nf~i~kk~~gg~LqkAk~e~~keKeQ~ee-EKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~K  197 (372)
                      ||+||       ||||+++++  ..+++|+++ +|++||++|||||||||||+++|+++|++||+||++||++||||+.+
T Consensus         1 m~~~~-------g~~~~k~e~--~~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~k   71 (107)
T 1ytz_T            1 MGASY-------SSYLAKADQ--KRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQ   71 (107)
T ss_dssp             ---CC-------TTHHHHHHH--HHHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcch-------hhHHHHHHh--cccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            57899       899988755  456899885 69999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHHHHHHHhhccCCCCCC
Q psy7417         198 QKRQDYDVSKIIINKKIMPSPGQGR  222 (372)
Q Consensus       198 vkrQkYEI~eL~~RV~DL~R~Ka~k  222 (372)
                      |++|+|||++|++||+||  |||.+
T Consensus        72 v~kq~yEI~eL~~rV~dl--gKfkK   94 (107)
T 1ytz_T           72 IKRKKYEIVTLRNRIDQA--QKHSK   94 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHT--CCCC-
T ss_pred             HHhhhhHHHHHHHHHHHh--cCccC
Confidence            999999999999999999  99886

>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2

Probab=99.95  E-value=2.2e-29  Score=227.80  Aligned_cols=138  Identities=20%  Similarity=0.297  Sum_probs=92.5

Q ss_pred             chhhHHHHhhhhhHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHH
Q psy7417         132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIIN  211 (372)
Q Consensus       132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~R  211 (372)
                      .+|++|..++..++++.+++|++||++|||||||||||.++|+++|++||+||++||+++|||+++|.+|+|||++|++|
T Consensus        22 lll~kA~e~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~r  101 (180)
T 1j1e_C           22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK  101 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhccccccC---CChhhhhhhhhcchhhhhHHHHHHHH
Q psy7417         212 KKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDT---RSYDDKKKLFEGGYLSLTKESLEKQY  288 (372)
Q Consensus       212 V~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~~d~---rs~~drr~~fe~~~~~~~~~~~~~~~  288 (372)
                      |+|| +|||.+                         |.+.-||+|...+-+   -|-..-...|.++++.|.+++-+.  
T Consensus       102 V~DL-rGKFkK-------------------------P~LkkV~~s~d~m~~allg~k~~~~~d~RanLK~Vkke~~e~--  153 (180)
T 1j1e_C          102 IFDL-RGKFKR-------------------------PTLRRVRISADAMMQALLGARAKESLDLRAHLKQVKKEDTEK--  153 (180)
T ss_dssp             HHHH-C-----------------------------------CCCCHHHHHHHHHSCC-----------------------
T ss_pred             HHHH-Hhcccc-------------------------cchhhhcccHHHHHHHHHHhhHhhhhhHHHhccccccccccc--
Confidence            9999 999998                         888899999988764   233333568999999999987332  


Q ss_pred             HHHHHhhhcccccCCCCcc
Q psy7417         289 AEKVDQFGNRQKTKLPKWF  307 (372)
Q Consensus       289 ~~k~~~f~~r~k~~~p~w~  307 (372)
                                .+...|.|.
T Consensus       154 ----------~~~~~~dWr  162 (180)
T 1j1e_C          154 ----------ENREVGDWR  162 (180)
T ss_dssp             -------------------
T ss_pred             ----------cccccchHH
Confidence                      334778886

>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B

Probab=99.95  E-value=2.5e-29  Score=211.14  Aligned_cols=90  Identities=36%  Similarity=0.486  Sum_probs=68.2

Q ss_pred             cchhhH-HHHhhhhhHHHHH-HHHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHH
Q psy7417         131 GLTLST-AQLERNKTKEQIE-EEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKI  208 (372)
Q Consensus       131 gg~Lqk-Ak~e~~keKeQ~e-eEKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL  208 (372)
                      ||||++ |+.+++.+++|++ ++|++||++|||||||||||+++|+++|++||+||++||++||||+.+|++|+|||++|
T Consensus         3 ~g~l~~~~~~e~~~~k~q~ereeKkkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL   82 (106)
T 1j1d_B            3 GGYIQKQAQTERKSGKRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVL   82 (106)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHH
Confidence            889988 3445666799988 88999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccCCCCCC
Q psy7417         209 IINKKIMPSPGQGR  222 (372)
Q Consensus       209 ~~RV~DL~R~Ka~k  222 (372)
                      ++||+||  |||++
T Consensus        83 ~~rV~dl--gKf~K   94 (106)
T 1j1d_B           83 RNRINDN--QKVSK   94 (106)
T ss_dssp             HHHHHTC-------
T ss_pred             HHHHHHh--cCccC
Confidence            9999999  88886

>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2

Probab=99.94  E-value=1.6e-27  Score=207.00  Aligned_cols=93  Identities=25%  Similarity=0.374  Sum_probs=83.4

Q ss_pred             chhhHHHHhhhhhHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHH
Q psy7417         132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIIN  211 (372)
Q Consensus       132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~R  211 (372)
                      .+|++|..++.+++++.+++|++||++|||||||||||.++|+++|++||+||++||++||||+.+|++|+|||++|++|
T Consensus        22 lll~kA~e~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r  101 (133)
T 1j1d_C           22 LLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK  101 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCC
Q psy7417         212 KKIMPSPGQGRPGF  225 (372)
Q Consensus       212 V~DL~R~Ka~kkg~  225 (372)
                      |+|| +|||.+..|
T Consensus       102 V~Dl-~gKfkKP~L  114 (133)
T 1j1d_C          102 IFDL-RGKFKRPTL  114 (133)
T ss_dssp             HHHH-C--------
T ss_pred             HHHH-HcccCCCcc
Confidence            9999 999988444

>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A

Probab=99.94  E-value=7.2e-28  Score=218.22  Aligned_cols=125  Identities=19%  Similarity=0.210  Sum_probs=105.5

Q ss_pred             chhhHHHHhhhhhHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHHHHHHHHHHhhhhhcccHHHHhhhhhhhHHHHHHH
Q psy7417         132 LTLSTAQLERNKTKEQIEEEKKIALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDVSKIIIN  211 (372)
Q Consensus       132 g~LqkAk~e~~keKeQ~eeEKkkiLaER~kPLnIdgLsed~LrEkaKELh~rI~kLEeEKYDLE~KvkrQkYEI~eL~~R  211 (372)
                      .+|++|..++..+.++.+++|++||++||||||||| |.++|+++|++||+||++||+++|||+++|.+|+|||++|+++
T Consensus        20 lll~kA~e~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r   98 (182)
T 1ytz_I           20 AMLQLAVTEIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDTEVKLQKTNKELEDLSQK   98 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHH
Confidence            588999999999899999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HhhccCCCCCCCCCCCCCCCCCcccchhhhhhCCCCCccchhhhccccccC---CChhhhhhhhhcchhhhhHHH
Q psy7417         212 KKIMPSPGQGRPGFNPRYVQTPNLFNNATALTGKYPPKIQVASKYERRVDT---RSYDDKKKLFEGGYLSLTKES  283 (372)
Q Consensus       212 V~DL~R~Ka~kkg~dp~~~~~~~~~~~~~a~~~~~PPki~~~Skydr~~d~---rs~~drr~~fe~~~~~~~~~~  283 (372)
                      |+|| +|||.+                         |.+.-||+|...+-+   -|-.--...|.++++.|.+++
T Consensus        99 VnDL-rGKfkK-------------------------P~LkkV~~sad~m~kallg~k~k~~~d~RanLK~Vkke~  147 (182)
T 1ytz_I           99 LFDL-RGKFKR-------------------------PPLRRVRMSADAMLRALLGSKHKVNMDLRANLKQVKKED  147 (182)
T ss_dssp             TGGG-TCSCSS-------------------------CSSCCCCCCHHHHHHHHHTTCCCCCCSSCCCCCCC----
T ss_pred             HHHH-Hhhhcc-------------------------cchhhccccHhHHHHHHhCCCchhhhhHHHhccccccch
Confidence            9999 899998                         666667777554322   111111347999999999987

>2z5h_T TNT, troponin T, fast skeletal muscle isoforms; coiled coil, actin, tropomyosin, cytoskeleton, cardiomyopathy, four-helix bundle; 2.89A {Gallus gallus}

Probab=99.42  E-value=5.2e-16  Score=116.99  Aligned_cols=51  Identities=39%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             CCChhHhhhHHHhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHH
Q psy7417           8 GGDPEFVKRQEAKSSALDEQLKEYIVEWRNQRAKEEEDLKRLKEKQAKRKVMRAE   62 (372)
Q Consensus         8 ~g~~~~~KR~EKdl~el~~~Lq~lIe~hfeqRkKEEEEL~~LKeRiEkRRaERaE   62 (372)
                      +=|+.++|||+|||.+    ||+||+.||++|+|+|+||++|+.|||+||++|||
T Consensus         5 dfdd~~rKR~eKDl~E----Lq~LI~~HF~qRkkeEeeL~~L~~riE~Rr~eRaE   55 (55)
T 2z5h_T            5 DFDDIQKKRQNKDLIE----LQALIDSHFEARRKEEEELVALKERIEKRRAERAE   55 (55)
T ss_dssp             ----CCSSTTTTHHHH----TTTTTTTSSSSSSSTTTSTTTC-------------
T ss_pred             cHHHHHhccccccHHH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence            3467889999999999    79999999999999999999999999999999986

>1a2x_B Troponin I; muscle contraction regulation, complex (skeletal muscle/muscle protein); 2.30A {Oryctolagus cuniculus} SCOP: j.22.1.1

Probab=84.40  E-value=0.29  Score=35.81  Aligned_cols=29  Identities=28%  Similarity=0.226  Sum_probs=13.4

Q ss_pred             cchhhHHHHhhhhhHHHHHHHHHhhhhcc
Q psy7417         131 GLTLSTAQLERNKTKEQIEEEKKIALNIR  159 (372)
Q Consensus       131 gg~LqkAk~e~~keKeQ~eeEKkkiLaER  159 (372)
                      +.||++|...+..+..+.+++|.+||++|
T Consensus        19 slmL~~A~~~Le~E~~~k~~eK~~~L~Er   47 (47)
T 1a2x_B           19 SVMLQIAATELEKEEGRREAEKQNYLAEH   47 (47)
T ss_dssp             HHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00