Psyllid ID: psy7429

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-----
MTIFGPPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDDLDKPPDGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN
ccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccEEEEEEEEEEEEccccccccEEEEEEEccccccccccccccEEEEEEEEccccccccccccccEEEEcccccccccEEEEEccccccccEEEEEEEEEcccEEEEEccEEEEEEEEEEcEEEcccccEEEEEEEcccccccEEEEEEccccccccccccccccccccccccEEEEEccEEEEEEEccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHEEEEcccccccEEEEEHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccccHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEcEEEEEEEEEccccccccccccccEEEEcccccccccEEEEc
ccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEcEcccccccEEEEEEEEEHEEEEcccHHcEEEEHHHHHHHHcccccccHHEEEEEEccccccccccccccEEEEEcccHHcccccEEEEEcccccEEEEEEEEEEEEEccEEEEEcccEEEccccEEEEEEccccccEEEEEcEEEEcccEEEEEEcccccccEEEEccccHHHHcccccEEEEEcccccccEEccccccccccHEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEccccccccccccHHHHHHHHHHHHHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcHHHccccccccccccccEEEEEEEEEHEEEEcccHHHHHHHcHHHHHHHccccEcHHHccccEEEEcccHHcccccEEEEc
mtifgpprtaamhvlfpSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRlirpvgnnsdkLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQewedyklkwspeeyggvdtlhvpsehiwlpdivlynnadgnyeVTIMTKAILHydgkvvwnppaiyksfceidveyfpfdVQTCVMKfgswtydgytvdlkhilqgpdsdkidigidLQDYYLSVEWdimkvpavrnekfyscceepypdiifNITLRRKTLFYTVNLIIPCVGISFLSVLVFYlpsdsgekVSLCISILLSLTVFFLLLAeiipptsltvplLGKYLLFTMILVTLSVVVTIAVLNvnfrspvthvmkpWVHKVFIEVLPKIlfiqrpakdndddldkppdgvltevfdvpdyvdyggryqtdfdipslppsrydvsntgstvvpcygdplpisnleaddimfsptsmcpptqdgtdvsptfdnqmilmprpltwrlpyelpsKLARLASIHfcdlltpinFLQEWEDyklkwspeeyggvdtlhvpsehiwlpdivlyn
MTIFGPPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRlirpvgnnsdkLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDDLDKPPDGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVdtlhvpsehiwlpdivlyn
MTIFGPPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCisillsltvfflllAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAkdndddldkppdGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN
********TAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQR**************GVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMF******************FDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLY*
**********AMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILF*******************************************************GSTVVPCYGDPLPISNLEADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN
MTIFGPPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDDLDKPPDGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN
**IFGPPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPA*******************************************************************EADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTIFGPPRTAAMHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPAKDNDDDLDKPPDGVLTEVFDVPDYVDYGGRYQTDFDIPSLPPSRYDVSNTGSTVVPCYGDPLPISNLEADDIMFSPTSMCPPTQDGTDVSPTFDNQMILMPRPLTWRLPYELPSKLARLASIHFCDLLTPINFLQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query555 2.2.26 [Sep-21-2011]
P09478567 Acetylcholine receptor su yes N/A 0.809 0.791 0.692 1e-180
P17644576 Acetylcholine receptor su no N/A 0.610 0.588 0.704 1e-146
P23414557 Acetylcholine receptor su N/A N/A 0.610 0.608 0.700 1e-145
P91766516 Acetylcholine receptor su N/A N/A 0.612 0.658 0.718 1e-143
P25162519 Acetylcholine receptor su no N/A 0.677 0.724 0.635 1e-140
Q9N587502 Acetylcholine receptor su yes N/A 0.612 0.677 0.602 1e-118
Q23022511 Acetylcholine receptor su no N/A 0.625 0.679 0.562 1e-113
P32297505 Neuronal acetylcholine re yes N/A 0.616 0.677 0.517 1e-108
Q07263495 Neuronal acetylcholine re yes N/A 0.616 0.690 0.517 1e-108
Q8R4G9499 Neuronal acetylcholine re yes N/A 0.609 0.677 0.522 1e-107
>sp|P09478|ACH1_DROME Acetylcholine receptor subunit alpha-like 1 OS=Drosophila melanogaster GN=nAcRalpha-96Aa PE=2 SV=2 Back     alignment and function desciption
 Score =  632 bits (1629), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 336/485 (69%), Positives = 384/485 (79%), Gaps = 36/485 (7%)

Query: 14  VLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIE 73
           VLF ++   +        N +AKRLYDDLLSNYNRLIRPVGNNSD+LTVKMGL+LSQLI+
Sbjct: 4   VLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLID 63

Query: 74  VNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWL 133
           VNLKNQIM               TTNVWV QEW DYKLKW+P++YGGVDTLHVPSEHIWL
Sbjct: 64  VNLKNQIM---------------TTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWL 108

Query: 134 PDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193
           PDIVLYNNADGNYEVTIMTKAILH+ GKVVW PPAIYKSFCEIDVEYFPFD QTC MKFG
Sbjct: 109 PDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFG 168

Query: 194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYP 253
           SWTYDGY VDL+H+ Q  DSD I++GIDLQDYY+SVEWDIM+VPAVRNEKFYSCCEEPY 
Sbjct: 169 SWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYL 228

Query: 254 DIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLL 313
           DI+FN+TLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEK+SLCISILLSLTVFFLL
Sbjct: 229 DIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLL 288

Query: 314 LAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEV 373
           LAEIIPPTSLTVPLLGKYLLFTM+LVTLSVVVTIAVLNVNFRSPVTH M PWV ++FI++
Sbjct: 289 LAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQI 348

Query: 374 LPKILFIQRPAKDNDDDLDKPPDGVLTEVF----DVPDYVDY-GGRYQTDFDIPSLPPS- 427
           LPK+L I+RP K+  ++   P   VLT+V+    DV  +V+Y   R+  D+ IP+LP S 
Sbjct: 349 LPKLLCIERPKKEEPEEDQPPE--VLTDVYHLPPDVDKFVNYDSKRFSGDYGIPALPASH 406

Query: 428 RYDVSNTGSTVVPCYGDPLPISNLE---ADDIMFSPTSM--------CP--PTQDGTDVS 474
           R+D++  G     C+ +P   S+L    ADD +FSP+ +        CP        D+S
Sbjct: 407 RFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDISPGCCPAAAAAAAADLS 466

Query: 475 PTFDN 479
           PTF+ 
Sbjct: 467 PTFEK 471
After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Drosophila melanogaster (taxid: 7227)
>sp|P17644|ACH2_DROME Acetylcholine receptor subunit alpha-like 2 OS=Drosophila melanogaster GN=nAcRalpha-96Ab PE=2 SV=1 Back     alignment and function description
>sp|P23414|ACH1_SCHGR Acetylcholine receptor subunit alpha-L1 OS=Schistocerca gregaria PE=2 SV=1 Back     alignment and function description
>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1 Back     alignment and function description
>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3 Back     alignment and function description
>sp|Q9N587|ACH6_CAEEL Acetylcholine receptor subunit alpha-type unc-63 OS=Caenorhabditis elegans GN=unc-63 PE=1 SV=2 Back     alignment and function description
>sp|Q23022|ACH5_CAEEL Acetylcholine receptor subunit alpha-type unc-38 OS=Caenorhabditis elegans GN=unc-38 PE=2 SV=1 Back     alignment and function description
>sp|P32297|ACHA3_HUMAN Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4 Back     alignment and function description
>sp|Q07263|ACHA3_BOVIN Neuronal acetylcholine receptor subunit alpha-3 OS=Bos taurus GN=CHRNA3 PE=2 SV=1 Back     alignment and function description
>sp|Q8R4G9|ACHA3_MOUSE Neuronal acetylcholine receptor subunit alpha-3 OS=Mus musculus GN=Chrna3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
118781880557 AGAP002974-PA [Anopheles gambiae str. PE 0.818 0.815 0.736 0.0
157104158 669 acetylcholine receptor protein alpha 1, 0.814 0.675 0.730 0.0
386302680553 nicotinic acetylcholine receptor alpha1 0.801 0.804 0.736 0.0
419184283562 nicotinic acetylcholine receptor alpha1 0.812 0.802 0.717 0.0
306480881575 nicotinic acetylcholine receptor [Ctenoc 0.796 0.768 0.723 0.0
198453248571 GA27331 [Drosophila pseudoobscura pseudo 0.809 0.786 0.701 0.0
195151799574 GL21978 [Drosophila persimilis] gi|19411 0.809 0.782 0.697 0.0
195547833547 nicotinic acetylcholine receptor alpha 1 0.794 0.806 0.734 0.0
195389310 733 GJ23404 [Drosophila virilis] gi|19415140 0.809 0.612 0.702 0.0
195036026571 GH18787 [Drosophila grimshawi] gi|193893 0.809 0.786 0.699 0.0
>gi|118781880|ref|XP_311918.3| AGAP002974-PA [Anopheles gambiae str. PEST] gi|51873075|gb|AAU12503.1| nicotinic acetylcholine receptor subunit alpha 1 [Anopheles gambiae] gi|116129303|gb|EAA08125.3| AGAP002974-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/482 (73%), Positives = 396/482 (82%), Gaps = 28/482 (5%)

Query: 12  MHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQL 71
           M  +  +  F+         N ++KRLYDDLLSNYNRLIRPVGNNSD+LTVKMGL+LSQL
Sbjct: 1   MGSVLLTAVFIALQFATGLANPDSKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQL 60

Query: 72  IEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHI 131
           I+VNLKNQIM               TTNVWV QEW DYKLKW+P++YGGVDTLHVPSEHI
Sbjct: 61  IDVNLKNQIM---------------TTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHI 105

Query: 132 WLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMK 191
           WLPDIVLYNNADGNYEVTIMTKAILH+ GKVVW PPAIYKSFCEIDVEYFPFD QTC MK
Sbjct: 106 WLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMK 165

Query: 192 FGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEP 251
           FGSWTYDGY VDL+H+ Q PDSD IDIGIDLQDYY+SVEWDIMKVPAVRNEKFYSCCEEP
Sbjct: 166 FGSWTYDGYMVDLRHLQQTPDSDNIDIGIDLQDYYISVEWDIMKVPAVRNEKFYSCCEEP 225

Query: 252 YPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFF 311
           YPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEK+SLCISILLSLTVFF
Sbjct: 226 YPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFF 285

Query: 312 LLLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFI 371
           LLLAEIIPPTSLTVPLLGKYLLFTM+LVTLSVVVTIAVLNVNFRSPVTH M PWVH+VFI
Sbjct: 286 LLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVHRVFI 345

Query: 372 EVLPKILFIQRPAKDND--DDLDKPPDGVLTEVFDVP----DYVDYGGR-YQTDFDIPSL 424
           E+LPK+L I+RP K+++  D+ D+ P  VLT+VF VP     YV + G+ Y TDFDIP+L
Sbjct: 346 ELLPKVLCIERPKKEDEPSDNDDQTPTDVLTDVFQVPPDVEKYVGFCGKEYGTDFDIPAL 405

Query: 425 PPSRYDVSNTGSTVVPCYGDPLPISNLE--ADDIMFSPTSM--CPPTQDGTDVSPTFDNQ 480
           PPSR+DV+ +G  V PC+G+P   +      DD +FSPT      PT  G D+SPTF+  
Sbjct: 406 PPSRFDVAASGG-VGPCFGEPPLPALPLPGGDDDLFSPTGNGDMSPTCCG-DLSPTFEKP 463

Query: 481 MI 482
           ++
Sbjct: 464 LL 465

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157104158|ref|XP_001648278.1| acetylcholine receptor protein alpha 1, 2, 3, 4 invertebrate [Aedes aegypti] gi|108880393|gb|EAT44618.1| AAEL004006-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|386302680|gb|AFJ04793.1| nicotinic acetylcholine receptor alpha1 subunit [Periplaneta americana] Back     alignment and taxonomy information
>gi|419184283|gb|AFX68724.1| nicotinic acetylcholine receptor alpha1 subunit [Lucilia cuprina] Back     alignment and taxonomy information
>gi|306480881|emb|CBX19379.1| nicotinic acetylcholine receptor [Ctenocephalides felis] Back     alignment and taxonomy information
>gi|198453248|ref|XP_002137628.1| GA27331 [Drosophila pseudoobscura pseudoobscura] gi|198132277|gb|EDY68186.1| GA27331 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|195151799|ref|XP_002016826.1| GL21978 [Drosophila persimilis] gi|194111883|gb|EDW33926.1| GL21978 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|195547833|gb|ACG49260.1| nicotinic acetylcholine receptor alpha 1 subunit [Liposcelis bostrychophila] Back     alignment and taxonomy information
>gi|195389310|ref|XP_002053320.1| GJ23404 [Drosophila virilis] gi|194151406|gb|EDW66840.1| GJ23404 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195036026|ref|XP_001989472.1| GH18787 [Drosophila grimshawi] gi|193893668|gb|EDV92534.1| GH18787 [Drosophila grimshawi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query555
FB|FBgn0000036567 nAcRalpha-96Aa "nicotinic Acet 0.789 0.772 0.675 5e-163
FB|FBgn0000039576 nAcRalpha-96Ab "nicotinic Acet 0.610 0.588 0.673 4.5e-130
FB|FBgn0015519 795 nAcRalpha-7E "nicotinic Acetyl 0.625 0.436 0.663 5.7e-130
FB|FBgn0037212568 nAcRalpha-80B "nicotinic Acety 0.609 0.595 0.660 1.2e-127
FB|FBgn0004118519 nAcRbeta-96A "nicotinic Acetyl 0.677 0.724 0.594 1.7e-123
WB|WBGene00006797502 unc-63 [Caenorhabditis elegans 0.309 0.342 0.585 1e-111
WB|WBGene00006774511 unc-38 [Caenorhabditis elegans 0.630 0.684 0.531 1.3e-100
RGD|2346630 Chrna4 "cholinergic receptor, 0.625 0.550 0.498 3e-95
UNIPROTKB|P09483630 Chrna4 "Neuronal acetylcholine 0.625 0.550 0.498 3e-95
UNIPROTKB|J3KMY9514 CHRNA2 "Neuronal acetylcholine 0.509 0.550 0.551 2.1e-92
FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 319/472 (67%), Positives = 364/472 (77%)

Query:    14 VLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIE 73
             VLF ++   +        N +AKRLYDDLLSNYNRLIRPVGNNSD+LTVKMGL+LSQLI+
Sbjct:     4 VLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLID 63

Query:    74 VNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWL 133
             VNLKNQIMTTNVWV Q               EW DYKLKW+P++YGGVDTLHVPSEHIWL
Sbjct:    64 VNLKNQIMTTNVWVEQ---------------EWNDYKLKWNPDDYGGVDTLHVPSEHIWL 108

Query:   134 PDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193
             PDIVLYNNADGNYEVTIMTKAILH+ GKVVW PPAIYKSFCEIDVEYFPFD QTC MKFG
Sbjct:   109 PDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFG 168

Query:   194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYP 253
             SWTYDGY VDL+H+ Q  DSD I++GIDLQDYY+SVEWDIM+VPAVRNEKFYSCCEEPY 
Sbjct:   169 SWTYDGYMVDLRHLKQTADSDNIEVGIDLQDYYISVEWDIMRVPAVRNEKFYSCCEEPYL 228

Query:   254 DIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXX 313
             DI+FN+TLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEK+SLC             
Sbjct:   229 DIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKISLCISILLSLTVFFLL 288

Query:   314 XAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEV 373
              AEIIPPTSLTVPLLGKYLLFTM+LVTLSVVVTIAVLNVNFRSPVTH M PWV ++FI++
Sbjct:   289 LAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNVNFRSPVTHRMAPWVQRLFIQI 348

Query:   374 LPKILFIQRPAXXXXXXXXXXXXGVLTEVF----DVPDYVDYGG-RYQTDFDIPSLPPS- 427
             LPK+L I+RP              VLT+V+    DV  +V+Y   R+  D+ IP+LP S 
Sbjct:   349 LPKLLCIERPKKEEPEEDQPPE--VLTDVYHLPPDVDKFVNYDSKRFSGDYGIPALPASH 406

Query:   428 RYDVSNTGSTVVPCYGDP-LPISNLE---ADDIMFSPTSMCPPTQDGTDVSP 475
             R+D++  G     C+ +P LP S+L    ADD +FSP+ +     +G D+SP
Sbjct:   407 RFDLAAAGGISAHCFAEPPLP-SSLPLPGADDDLFSPSGL-----NG-DISP 451
GO:0005887 "integral to plasma membrane" evidence=NAS
GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA;ISS
GO:0005892 "acetylcholine-gated channel complex" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0006811 "ion transport" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IEA
FB|FBgn0000039 nAcRalpha-96Ab "nicotinic Acetylcholine Receptor alpha 96Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0015519 nAcRalpha-7E "nicotinic Acetylcholine Receptor alpha 7E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0037212 nAcRalpha-80B "nicotinic Acetylcholine Receptor alpha 80B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004118 nAcRbeta-96A "nicotinic Acetylcholine Receptor beta 96A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006797 unc-63 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00006774 unc-38 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
RGD|2346 Chrna4 "cholinergic receptor, nicotinic, alpha 4 (neuronal)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P09483 Chrna4 "Neuronal acetylcholine receptor subunit alpha-4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|J3KMY9 CHRNA2 "Neuronal acetylcholine receptor subunit alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P09481ACHA3_CHICKNo assigned EC number0.49610.63600.7116yesN/A
P32297ACHA3_HUMANNo assigned EC number0.51770.61620.6772yesN/A
P04757ACHA3_RATNo assigned EC number0.52350.60720.6753yesN/A
P09478ACH1_DROMENo assigned EC number0.69270.80900.7918yesN/A
Q9N587ACH6_CAEELNo assigned EC number0.60210.61260.6772yesN/A
P23414ACH1_SCHGRNo assigned EC number0.70050.61080.6086N/AN/A
P91766ACH1_MANSENo assigned EC number0.71830.61260.6589N/AN/A
Q07263ACHA3_BOVINNo assigned EC number0.51770.61620.6909yesN/A
Q8R4G9ACHA3_MOUSENo assigned EC number0.52200.60900.6773yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 2e-97
TIGR00860459 TIGR00860, LIC, Cation transporter family protein 2e-92
pfam02932228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 8e-58
pfam02931 215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 4e-13
TIGR00860 459 TIGR00860, LIC, Cation transporter family protein 2e-09
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information 
 Score =  294 bits (755), Expect = 2e-97
 Identities = 114/232 (49%), Positives = 149/232 (64%), Gaps = 18/232 (7%)

Query: 35  AKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQ 94
            +RL DDLL NY++ +RPV N SD +TV +GL L+Q+I+V+ KNQ +TTNVW+ Q     
Sbjct: 1   EERLLDDLLENYDKRVRPVKNGSDPVTVSVGLYLTQIIDVDEKNQDLTTNVWLRQ----- 55

Query: 95  IMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTI-MTK 153
                     +W D +L W PE+YGG+ +L +PS+ IW PDIVLYN ADG +++T   T 
Sbjct: 56  ----------QWTDERLAWDPEDYGGITSLRLPSDKIWKPDIVLYNKADGIHDITTPNTN 105

Query: 154 AILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDS 213
             ++ DG V+W+PPAIYKS C +D+ YFPFD Q C +KFGSWTY+G  VDL+     P  
Sbjct: 106 VRVYPDGTVLWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTYNGEEVDLRWKDDTPPI 165

Query: 214 DKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKT 265
                 IDL D+  + EWDI+ VPA RNE  Y C  E YPD+ F   LRRK 
Sbjct: 166 LD--EEIDLSDFTENGEWDIVDVPAKRNEYPYGCYSELYPDVTFYFVLRRKP 215

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 555
KOG3646|consensus486 100.0
TIGR00860459 LIC Cation transporter family protein. selective w 100.0
KOG3645|consensus449 100.0
KOG3643|consensus459 100.0
KOG3644|consensus457 100.0
KOG3642|consensus466 100.0
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 100.0
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 99.78
KOG3646|consensus 486 99.71
KOG3645|consensus 449 99.56
TIGR00860 459 LIC Cation transporter family protein. selective w 99.45
PF02931 217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.19
KOG3643|consensus 459 97.05
KOG3644|consensus 457 96.52
KOG3642|consensus 466 94.82
PF14494256 DUF4436: Domain of unknown function (DUF4436) 94.61
>KOG3646|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-76  Score=600.50  Aligned_cols=345  Identities=47%  Similarity=0.907  Sum_probs=331.6

Q ss_pred             HHHHHHHHHhhhcCChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeE
Q psy7429          18 SLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT   97 (555)
Q Consensus        18 ~l~~~~~~~~~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~   97 (555)
                      ++.+++.......++.+|.||+++|++|||+..||+.|.++|++|++++.+.||.++|||+|.++               
T Consensus        10 ll~ll~~~~~~v~~s~~E~rL~~dL~~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~---------------   74 (486)
T KOG3646|consen   10 LLFILLICIKQVMGSVAEYRLLTDLLENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLS---------------   74 (486)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHhhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchh---------------
Confidence            44444455456778999999999999999999999999999999999999999999999999999               


Q ss_pred             EEEEEecEEEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEecccc
Q psy7429          98 TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEID  177 (555)
Q Consensus        98 ~~~~l~~~W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~d  177 (555)
                      +++|++++|+|.+|+|||++||||+.+++|.++||+||+.+||+++++|+.+..+++.+++||.|.|.+|..++++|.+|
T Consensus        75 ~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLLYNSade~FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiD  154 (486)
T KOG3646|consen   75 VNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLLYNSADEQFDSTYKTNYVVYSTGSVLWVPPGIFKSSCKID  154 (486)
T ss_pred             hhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceeccccccccCCCcceeeEEEccCCeeeecCCceeeeeeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcccccceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEE
Q psy7429         178 VEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIF  257 (555)
Q Consensus       178 l~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~  257 (555)
                      .++||||+|.|.++||||+|++..++++...+..       ++|++.|..||||++.+.++.+.+..|.||+++|++++|
T Consensus       155 ItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g-------~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv~F  227 (486)
T KOG3646|consen  155 ITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDG-------GIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDVTF  227 (486)
T ss_pred             EEEecccccEEEEEeeeEEEcceeeeeeeccccC-------CcchhhcccCCceeeccccccceeeecccCCCCcceeEE
Confidence            9999999999999999999999999998755432       478999999999999999999999999999999999999


Q ss_pred             EEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHHHHHHHHH
Q psy7429         258 NITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMI  337 (555)
Q Consensus       258 ~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~~~~~~~~  337 (555)
                      ++++|||..||.+|+++||++++++++++|-+|+|++||++|.+|++|+..+|+..+++..|++|+.+|+++.||..||+
T Consensus       228 ~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~  307 (486)
T KOG3646|consen  228 YLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMF  307 (486)
T ss_pred             EEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhheeeeeecCCCCCCCCHHHHHHHHhhccceeeecCCC
Q psy7429         338 LVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILFIQRPA  384 (555)
Q Consensus       338 l~~lsll~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~~~~p~  384 (555)
                      ++++|++.|++|+|+|+|++.+|+|++|.|++|++++|-+|+|+||.
T Consensus       308 iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~  354 (486)
T KOG3646|consen  308 IVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPF  354 (486)
T ss_pred             HHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999993

>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>KOG3643|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>KOG3646|consensus Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>KOG3643|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>PF14494 DUF4436: Domain of unknown function (DUF4436) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
4aq5_A461 Gating Movement In Acetylcholine Receptor Analysed 2e-85
4aq5_A 461 Gating Movement In Acetylcholine Receptor Analysed 3e-08
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 2e-78
2bg9_A 370 Refined Structure Of The Nicotinic Acetylcholine Re 4e-08
4aq5_B493 Gating Movement In Acetylcholine Receptor Analysed 9e-74
4aq5_B 493 Gating Movement In Acetylcholine Receptor Analysed 1e-05
4aq5_C522 Gating Movement In Acetylcholine Receptor Analysed 2e-66
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 4e-64
2bg9_B 370 Refined Structure Of The Nicotinic Acetylcholine Re 1e-05
4aq5_E488 Gating Movement In Acetylcholine Receptor Analysed 5e-64
4aq5_E 488 Gating Movement In Acetylcholine Receptor Analysed 1e-06
2bg9_E370 Refined Structure Of The Nicotinic Acetylcholine Re 4e-60
2bg9_E 370 Refined Structure Of The Nicotinic Acetylcholine Re 8e-07
2bg9_C369 Refined Structure Of The Nicotinic Acetylcholine Re 4e-60
2qc1_B212 Crystal Structure Of The Extracellular Domain Of Th 2e-48
2qc1_B 212 Crystal Structure Of The Extracellular Domain Of Th 2e-10
2ksr_A164 Nmr Structures Of Tm Domain Of The N-Acetylcholine 2e-27
1oed_B250 Structure Of Acetylcholine Receptor Pore From Elect 4e-27
1oed_A227 Structure Of Acetylcholine Receptor Pore From Elect 5e-27
3sq6_A204 Crystal Structures Of The Ligand Binding Domain Of 2e-24
1oed_C260 Structure Of Acetylcholine Receptor Pore From Elect 2e-24
2lly_A137 Nmr Structures Of The Transmembrane Domains Of The 8e-23
3t4m_A230 Ac-Achbp Ligand Binding Domain Mutated To Human Alp 9e-23
2lm2_A137 Nmr Structures Of The Transmembrane Domains Of The 1e-22
3sh1_A230 Ac-Achbp Ligand Binding Domain Mutated To Human Alp 4e-22
2xnt_A236 Acetylcholine Binding Protein (Achbp) As Template F 2e-21
4afg_A230 Capitella Teleta Achbp In Complex With Varenicline 5e-21
2yme_A205 Crystal Structure Of A Mutant Binding Protein (5htb 6e-21
2ymd_A212 Crystal Structure Of A Mutant Binding Protein (5htb 2e-20
2xz6_A217 Mtset-Modified Y53c Mutant Of Aplysia Achbp Length 2e-20
2xz5_A217 Mmts-Modified Y53c Mutant Of Aplysia Achbp In Compl 2e-20
2br7_A217 Crystal Structure Of Acetylcholine-Binding Protein 3e-20
2byp_A214 Crystal Structure Of Aplysia Californica Achbp In C 6e-20
2byn_A227 Crystal Structure Of Apo Achbp From Aplysia Califor 7e-20
3pmz_A227 Crystal Structure Of The Complex Of Acetylcholine B 7e-20
2x00_D227 Crystal Structure Of A-Achbp In Complex With Gymnod 7e-20
2pgz_A230 Crystal Structure Of Cocaine Bound To An Ach-bindin 8e-20
2wn9_A228 Crystal Structure Of Aplysia Achbp In Complex With 8e-20
3gua_A217 Sulfates Bound In The Vestibule Of Achbp Length = 2 1e-19
3sio_A230 Ac-Achbp Ligand Binding Domain (Not Including Beta 4e-19
1oed_E260 Structure Of Acetylcholine Receptor Pore From Elect 6e-18
2lkg_A140 Wsa Major Conformation Length = 140 4e-14
2zju_A214 Crystal Structure Of Lymnaea Stagnalis Acetylcholin 2e-11
1ux2_A212 X-Ray Structure Of Acetylcholine Binding Protein (A 2e-11
1uw6_A211 X-Ray Structure Of Acetylcholine Binding Protein (A 2e-11
1uv6_A210 X-Ray Structure Of Acetylcholine Binding Protein (A 2e-11
4alx_A229 Crystal Structure Of Ls-Achbp Complexed With The Po 3e-11
1i9b_A217 X-Ray Structure Of Acetylcholine Binding Protein (A 3e-11
4aod_A205 Biomphalaria Glabrata Acetylcholine-Binding Protein 3e-11
2bj0_A203 Crystal Structure Of Achbp From Bulinus Truncatus R 4e-11
4aoe_A205 Biomphalaria Glabrata Acetylcholine-Binding Protein 3e-10
3rhw_A347 C. Elegans Glutamate-Gated Chloride Channel (Glucl) 3e-09
2k58_B35 Nmr Structures Of The First Transmembrane Domain Of 8e-09
3ei0_A317 Structure Of The E221a Mutant Of The Gloebacter Vio 1e-05
3tls_A321 The Glic Pentameric Ligand-Gated Ion Channel E19'p 1e-05
2xq9_A317 Pentameric Ligand Gated Ion Channel Glic Mutant E22 1e-05
4il9_A320 The Pentameric Ligand-gated Ion Channel Glic A237f 1e-05
3tlt_A321 The Glic Pentameric Ligand-Gated Ion Channel H11'f 1e-05
3ehz_A317 X-Ray Structure Of The Pentameric Ligand Gated Ion 1e-05
3eam_A317 An Open-Pore Structure Of A Bacterial Pentameric Li 1e-05
3p4w_A318 Structure Of Desflurane Bound To A Pentameric Ligan 1e-05
4ilc_A320 The Glic Pentameric Ligand-gated Ion Channel In Com 1e-05
3lsv_A317 Structure Of The A237f Mutant Of The Pentameric Lig 1e-05
3tlu_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 5e-05
3tlw_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 5e-05
3uu3_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 5e-05
3tlv_A321 The Glic Pentameric Ligand-Gated Ion Channel Loop2- 5e-05
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure 
Iteration: 1

 Score =  313 bits (802), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 159/364 (43%), Positives = 230/364 (63%), Gaps = 26/364 (7%)
Query: 18  SLTFLVFSVI-IAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNL 76
            L  L+FS   +  G++   RL  +LL NYN++IRPV +++  + + +GL+L QLI    
Sbjct: 10  GLVLLLFSCCGLVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLI---- 65
Query: 77  KNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDI 136
                      N +  NQI+ TNV + Q+W D +L+W+P +YGG+  + +PS+ +WLPD+
Sbjct: 66  -----------NVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDL 114
Query: 137 VLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWT 196
           VLYNNADG++ +  MTK +L Y GK++W PPAI+KS+CEI V +FPFD Q C MK G WT
Sbjct: 115 VLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWT 174
Query: 197 YDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPYPDI 255
           YDG  V +      P+SD+     DL  +  S EW +      ++  +Y+CC + PY DI
Sbjct: 175 YDGTKVSI-----SPESDR----PDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDI 225
Query: 256 IFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCXXXXXXXXXXXXXXA 315
            ++  ++R  L++ VN+IIPC+  SFL+VLVFYLP+DSGEK++L                
Sbjct: 226 TYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV 285
Query: 316 EIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLP 375
           E+IP TS  VPL+GKY+LFTMI V  S++VT+ V+N + RSP TH M  WV K+FI  +P
Sbjct: 286 ELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIP 345
Query: 376 KILF 379
            ++F
Sbjct: 346 NVMF 349
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369 Back     alignment and structure
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The Nicotinic Acetylcholine Receptor 1 Subunit Bound To Alpha-Bungarotoxin At 1.9 A Resolution Length = 212 Back     alignment and structure
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The Nicotinic Acetylcholine Receptor 1 Subunit Bound To Alpha-Bungarotoxin At 1.9 A Resolution Length = 212 Back     alignment and structure
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164 Back     alignment and structure
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250 Back     alignment and structure
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227 Back     alignment and structure
>pdb|3SQ6|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A Pentameric Alpha7 Nicotinic Receptor Chimera With Its Agonist Epibatidine Length = 204 Back     alignment and structure
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr A4 Subunit Length = 137 Back     alignment and structure
>pdb|3T4M|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr (Intermediate) Length = 230 Back     alignment and structure
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2 Subunit Length = 137 Back     alignment and structure
>pdb|3SH1|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr Length = 230 Back     alignment and structure
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For Hierarchical In Silico Screening Procedures To Identify Structurally Novel Ligands For The Nicotinic Receptors Length = 236 Back     alignment and structure
>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline Length = 230 Back     alignment and structure
>pdb|2YME|A Chain A, Crystal Structure Of A Mutant Binding Protein (5htbp-achbp) In Complex With Granisetron Length = 205 Back     alignment and structure
>pdb|2YMD|A Chain A, Crystal Structure Of A Mutant Binding Protein (5htbp-achbp) In Complex With Serotonin (5-hydroxytryptamine) Length = 212 Back     alignment and structure
>pdb|2XZ6|A Chain A, Mtset-Modified Y53c Mutant Of Aplysia Achbp Length = 217 Back     alignment and structure
>pdb|2XZ5|A Chain A, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With Acetylcholine Length = 217 Back     alignment and structure
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp) From Aplysia Californica In Complex With Hepes Length = 217 Back     alignment and structure
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex With Alpha-Conotoxin Imi Length = 214 Back     alignment and structure
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica Length = 227 Back     alignment and structure
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding Protein And D-Tubocurarine Length = 227 Back     alignment and structure
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A Length = 227 Back     alignment and structure
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding Protein Length = 230 Back     alignment and structure
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h- Dmxba Length = 228 Back     alignment and structure
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp Length = 217 Back     alignment and structure
>pdb|3SIO|A Chain A, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10 Linker) Mutated To Human Alpha-7 Nachr Length = 230 Back     alignment and structure
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2LKG|A Chain A, Wsa Major Conformation Length = 140 Back     alignment and structure
>pdb|2ZJU|A Chain A, Crystal Structure Of Lymnaea Stagnalis Acetylcholine Binding Protein (Ls-Achbp) Complexed With Imidacloprid Length = 214 Back     alignment and structure
>pdb|1UX2|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) Length = 212 Back     alignment and structure
>pdb|1UW6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) In Complex With Nicotine Length = 211 Back     alignment and structure
>pdb|1UV6|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) In Complex With Carbamylcholine Length = 210 Back     alignment and structure
>pdb|4ALX|A Chain A, Crystal Structure Of Ls-Achbp Complexed With The Potent Nachr Antagonist Dhbe Length = 229 Back     alignment and structure
>pdb|1I9B|A Chain A, X-Ray Structure Of Acetylcholine Binding Protein (Achbp) Length = 217 Back     alignment and structure
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1 (Bgachbp1) Length = 205 Back     alignment and structure
>pdb|2BJ0|A Chain A, Crystal Structure Of Achbp From Bulinus Truncatus Revals The Conserved Structural Scaffold And Sites Of Variation In Nicotinic Acetylcholine Receptors Length = 203 Back     alignment and structure
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2 (Bgachbp2) Length = 205 Back     alignment and structure
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347 Back     alignment and structure
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The Neuronal Acetylcholine Receptor Beta 2 Subunit Length = 35 Back     alignment and structure
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus Pentameric Ligand Gated Ion Channnel (Glic) Length = 317 Back     alignment and structure
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321 Back     alignment and structure
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In Complex With Tetraethylarsonium (Teas) Length = 317 Back     alignment and structure
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In Complex With Bromide Length = 320 Back     alignment and structure
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel Of Gloebacter Violaceus (Glic) In A Presumptive Open Conformation Length = 317 Back     alignment and structure
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand- Gated Ion Channel Length = 317 Back     alignment and structure
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated Ion Channel, Glic Length = 318 Back     alignment and structure
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex With Sulfates Length = 320 Back     alignment and structure
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand Gated Channel From Gloeobacter Violaceus Length = 317 Back     alignment and structure
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21' Oxidized Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321 Back     alignment and structure
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321 Back     alignment and structure
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22' Oxidized Mutant In A Locally-Closed Conformation (Lc3 Subtype) Length = 321 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query555
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 1e-162
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 9e-11
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 1e-157
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 3e-11
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 1e-156
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 6e-11
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 1e-154
2bg9_A 370 Acetylcholine receptor protein, alpha chain; ION c 3e-14
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 1e-153
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 9e-12
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 1e-152
2bg9_B 370 Acetylcholine receptor protein, beta chain; ION ch 5e-14
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 1e-150
2bg9_E 370 Acetylcholine receptor protein, gamma chain; ION c 2e-13
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 1e-148
2bg9_C 369 Acetylcholine receptor protein, delta chain; ION c 3e-13
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 1e-131
3tlw_A 321 GLR4197 protein, GLIC; Cys-loop receptor family, m 1e-09
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 1e-104
2qc1_B 212 Acetylcholine receptor subunit alpha; nicotinic ac 5e-15
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 2e-96
4afh_A 230 ACHBP; acetylcholine-binding protein, nicotinic re 4e-12
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 3e-96
2wn9_A 228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 2e-12
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 6e-96
3rqw_A 322 ELIC pentameric ligand gated ION channel from ERW 2e-06
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 3e-95
3rhw_A 347 Avermectin-sensitive glutamate-gated chloride CHA 4e-08
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 2e-91
3sq6_A 204 ACHBP, neuronal acetylcholine receptor subunit alp 1e-12
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 3e-89
1uw6_A 211 Acetylcholine-binding protein; pentamer, IGG fold, 3e-10
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 2e-87
2bj0_A 203 Acetylcholine-binding protein; 3D-structure, glyco 1e-10
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 6e-68
3igq_A 201 GLR4197 protein; plgic Cys-loop, membrane protein, 2e-08
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 4e-63
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 6e-56
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 7e-50
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 2e-49
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 2e-48
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 2e-46
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 4e-44
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
 Score =  468 bits (1206), Expect = e-162
 Identities = 166/383 (43%), Positives = 242/383 (63%), Gaps = 26/383 (6%)

Query: 15  LFPSLTFLVFSVI-IAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIE 73
               L  L+FS   +  G++   RL  +LL NYN++IRPV +++  + + +GL+L QLI 
Sbjct: 7   WHVGLVLLLFSCCGLVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLI- 65

Query: 74  VNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWL 133
                         N +  NQI+ TNV + Q+W D +L+W+P +YGG+  + +PS+ +WL
Sbjct: 66  --------------NVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWL 111

Query: 134 PDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFG 193
           PD+VLYNNADG++ +  MTK +L Y GK++W PPAI+KS+CEI V +FPFD Q C MK G
Sbjct: 112 PDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLG 171

Query: 194 SWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCC-EEPY 252
            WTYDG  V +                DL  +  S EW +      ++  +Y+CC + PY
Sbjct: 172 IWTYDGTKVSISPE---------SDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPY 222

Query: 253 PDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFL 312
            DI ++  ++R  L++ VN+IIPC+  SFL+VLVFYLP+DSGEK++L IS+LLSLTVF L
Sbjct: 223 LDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLL 282

Query: 313 LLAEIIPPTSLTVPLLGKYLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIE 372
           ++ E+IP TS  VPL+GKY+LFTMI V  S++VT+ V+N + RSP TH M  WV K+FI 
Sbjct: 283 VIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFIN 342

Query: 373 VLPKILFIQRPAKDNDDDLDKPP 395
            +P ++F     + + +  +   
Sbjct: 343 TIPNVMFFSTMKRASKEKQENKI 365
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 100.0
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 100.0
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 100.0
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 100.0
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 100.0
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 100.0
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 100.0
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 100.0
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 100.0
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 100.0
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 100.0
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 99.9
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 99.89
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 99.89
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 99.89
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 99.89
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.89
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.87
4aoe_A 205 Acetylcholine-binding protein type 2; ligand gated 99.63
4aod_A 205 Acetylcholine-binding protein type 1; ligand gated 99.62
3sq6_A 204 ACHBP, neuronal acetylcholine receptor subunit alp 99.57
4afh_A 230 ACHBP; acetylcholine-binding protein, nicotinic re 99.57
2qc1_B 212 Acetylcholine receptor subunit alpha; nicotinic ac 99.55
1uw6_A 211 Acetylcholine-binding protein; pentamer, IGG fold, 99.5
2wn9_A 228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.5
3igq_A 201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.48
4aq5_E 488 Acetylcholine receptor gamma subunit; membrane pro 99.46
4aq5_A 461 Acetylcholine receptor subunit alpha; membrane pro 99.45
4aq5_C 522 Acetylcholine receptor delta subunit; membrane pro 99.45
2bg9_C 369 Acetylcholine receptor protein, delta chain; ION c 99.45
2bg9_B 370 Acetylcholine receptor protein, beta chain; ION ch 99.44
3rhw_A 347 Avermectin-sensitive glutamate-gated chloride CHA 99.44
4aq5_B 493 Acetylcholine receptor beta subunit; membrane prot 99.43
2bg9_E 370 Acetylcholine receptor protein, gamma chain; ION c 99.43
2bg9_A 370 Acetylcholine receptor protein, alpha chain; ION c 99.41
2bj0_A 203 Acetylcholine-binding protein; 3D-structure, glyco 99.41
3tlw_A 321 GLR4197 protein, GLIC; Cys-loop receptor family, m 99.4
3rqw_A 322 ELIC pentameric ligand gated ION channel from ERW 99.04
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 98.77
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
Probab=100.00  E-value=3.2e-75  Score=625.74  Aligned_cols=349  Identities=48%  Similarity=0.929  Sum_probs=293.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeeccc
Q psy7429          12 MHVLFPSLTFLVFSVIIAQGNDEAKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNL   91 (555)
Q Consensus        12 m~~~~~~l~~~~~~~~~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~   91 (555)
                      |+.+.+++ ++.+.+.++.+++++++|+++||++||+.+||+.+.++|+.|++++.+.+|.++||++|.++         
T Consensus         6 ~~~~~~l~-l~~~~~~~~~~~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t---------   75 (461)
T 4aq5_A            6 YWHVGLVL-LLFSCCGLVLGSEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVE---------   75 (461)
T ss_dssp             --------------------CTTHHHHHHHHHHTCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEE---------
T ss_pred             hhHHHHHH-HHHHHHHhhcCCcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEE---------
Confidence            66665433 44444556777888999999999999999999999999999999999999999999999999         


Q ss_pred             ccceeEEEEEEecEEEecCCCCCCCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeE
Q psy7429          92 KNQIMTTNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYK  171 (555)
Q Consensus        92 ~~~~~~~~~~l~~~W~D~RL~Wnp~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~  171 (555)
                            +++|++|+|+|+||+|||++|+|++.+.++.++||+||++++|+++++++.....+++|++||+|.|.+|++++
T Consensus        76 ------~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~N~~d~~~~~~~~~~v~v~~dG~V~~~~~~~~~  149 (461)
T 4aq5_A           76 ------TNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFK  149 (461)
T ss_dssp             ------EEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEESSCCCSCCTTCSSCEEEECSBCCEEECCEEEEE
T ss_pred             ------EEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeeecccccccccccccceEEcCCccEEEecccccc
Confidence                  99999999999999999999999999999999999999999999999887666678999999999999999999


Q ss_pred             EeccccccCCCcccccceeeeecccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCC-
Q psy7429         172 SFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEE-  250 (555)
Q Consensus       172 ~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~-  250 (555)
                      +.|+||+++||||+|+|+|+|+||+|+++++++.+..+         ++++++|..++||++.+.+..+....|.||.+ 
T Consensus       150 s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~---------~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~  220 (461)
T 4aq5_A          150 SYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESD---------RPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDT  220 (461)
T ss_dssp             EECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCCC---------CCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSC
T ss_pred             ccccccccCCCCccCccCeEEeccccCCceEEEEeccc---------cccHHhhhccCceEEeeeeeEEEEEeecCcCCC
Confidence            99999999999999999999999999999999986432         56788899999999999999888888999888 


Q ss_pred             CCCeEEEEEEEEeeccceeeeeccchhhhhhheeeEEeccCCCCCeeeehhHHHHHHHHHHHHHHhhCCCCccccchhHH
Q psy7429         251 PYPDIIFNITLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSLCISILLSLTVFFLLLAEIIPPTSLTVPLLGK  330 (555)
Q Consensus       251 ~ys~l~~~l~l~R~~~~y~~~liiP~~li~~ls~~sF~lp~~s~~Ri~l~it~LLs~~~~~~~l~~~lP~~s~~~P~i~~  330 (555)
                      +|+++++++++||+++||++++++||+++++++|++||+|+++++|+++++|+||++++|+..+++.+|++|.++|+||+
T Consensus       221 ~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~  300 (461)
T 4aq5_A          221 PYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGK  300 (461)
T ss_dssp             CCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGG
T ss_pred             CcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988999999


Q ss_pred             HHHHHHHHHHHHHHHHhheeeeeecCCCCCCCCHHHHHHHHhhccceee---ecCCCC
Q psy7429         331 YLLFTMILVTLSVVVTIAVLNVNFRSPVTHVMKPWVHKVFIEVLPKILF---IQRPAK  385 (555)
Q Consensus       331 ~~~~~~~l~~lsll~tv~v~~l~~r~~~~~~~p~w~r~~f~~~l~~~l~---~~~p~~  385 (555)
                      |+++||+++++|++++++|+|+|+|++.+|++|+|+|++|++++|++||   |++|.+
T Consensus       301 y~~~~m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~  358 (461)
T 4aq5_A          301 YMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASK  358 (461)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHCCTTTC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCc
Confidence            9999999999999999999999999999999999999999999999999   999864
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 555
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 6e-59
d1uw6a_ 208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 5e-04
d1oedc_260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 1e-41
d1oedb_250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 1e-40
d1oeda_227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 8e-40
d1oede_260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 3e-39
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score =  192 bits (489), Expect = 6e-59
 Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 30/227 (13%)

Query: 41  DLLSNYNRLIRPV---GNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMT 97
           D+L N  +  RP          + V + LK   ++EVN     +    W           
Sbjct: 6   DILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQT-------- 57

Query: 98  TNVWVNQEWEDYKLKWSPEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 157
                   W D  L W+       D + VP   +W+PD+  YN      EV     A + 
Sbjct: 58  -------TWSDRTLAWNSSHSP--DQVSVPISSLWVPDLAAYNAIS-KPEVLTPQLARVV 107

Query: 158 YDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGSWTYDGYTVDLKHILQGPDSDKID 217
            DG+V++ P    +  C++          TC +K GSWT+    + +            +
Sbjct: 108 SDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREISVDP--------TTE 158

Query: 218 IGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRK 264
              D + +     ++I+ V   +N   YSCC E Y D+  ++  R+K
Sbjct: 159 NSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query555
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 100.0
d1oedc_260 Acetylcholine receptor protein, delta chain {Marbl 99.89
d1oedb_250 Acetylcholine receptor protein, beta chain {Marble 99.88
d1oede_260 Acetylcholine receptor protein, gamma chain {Marbl 99.87
d1oeda_227 Acetylcholine receptor protein, alpha chain {Marbl 99.86
d1uw6a_ 208 Acetylcholine binding protein (ACHBP) {Great pond 99.4
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure
class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=100.00  E-value=1.1e-41  Score=326.57  Aligned_cols=204  Identities=22%  Similarity=0.430  Sum_probs=174.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeehhccccceeeeeeeeecccccceeEEEEEEecEEEecCCCCC
Q psy7429          35 AKRLYDDLLSNYNRLIRPVGNNSDKLTVKMGLKLSQLIEVNLKNQIMTTNVWVNQNLKNQIMTTNVWVNQEWEDYKLKWS  114 (555)
Q Consensus        35 ~~~L~~~Ll~~Yd~~~rP~~~~~~pv~V~v~l~l~~i~~vde~~~~~t~~~~~~~~~~~~~~~~~~~l~~~W~D~RL~Wn  114 (555)
                      .++|+.++.+.|.+.+||. +.++|+.|++++.+.+|.++||++|.++               +++|++|+|+|+||+||
T Consensus         4 ~~dll~~y~~~~rP~~~P~-~~~~pv~V~~~l~l~~i~~vde~~q~~~---------------~~~~~~~~W~D~rL~Wn   67 (208)
T d1uw6a_           4 RADILYNIRQTSRPDVIPT-QRDRPVAVSVSLKFINILEVNEITNEVD---------------VVFWQQTTWSDRTLAWN   67 (208)
T ss_dssp             HHHHHHHHHHHCCTTSCCC-CTTCCEEEEEEEEEEEEEEEETTTTEEE---------------EEEEEEEEEECGGGCCC
T ss_pred             HHHhHhccccccCCCcCCc-CCCCCEEEEEEEEEEeEeeecccCCEEE---------------EEEEEEEEEECCccccc
Confidence            4445555555555555554 4578999999999999999999999999               99999999999999999


Q ss_pred             CCCCCCeeEeeeCCCCeecCceeeccccCCCceeeeeeceEEEeccEEEEeCCceeEEeccccccCCCcccccceeeeec
Q psy7429         115 PEEYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHYDGKVVWNPPAIYKSFCEIDVEYFPFDVQTCVMKFGS  194 (555)
Q Consensus       115 p~e~~~i~~i~v~~~~IW~Pdi~~~N~~~~~~~~~~~~~v~v~~dG~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S  194 (555)
                      |++|+++  +.++.++||+||++++|+++.... .....+.|++||+|.|.+++.+++.|.|++..|| |+|+|.|+|||
T Consensus        68 p~~~~~~--~~v~~~~iW~PDi~l~n~~~~~~~-~~~~~~~v~~~G~V~~~~~~~~~~~C~~~~~~f~-d~Q~C~l~fgS  143 (208)
T d1uw6a_          68 SSHSPDQ--VSVPISSLWVPDLAAYNAISKPEV-LTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGS  143 (208)
T ss_dssp             CTTSCSE--EEEEGGGSCCCCEEETTBCSCCEE-CSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS-SCEEEEEEEEE
T ss_pred             cccCCce--eccchhccccccEEEEEEcccccc-ccceEEEEEeCCcEEEEecEEEEEeccccccCCc-ceEEEEEEEeC
Confidence            9999875  667789999999999998876543 3345689999999999999999999999987777 89999999999


Q ss_pred             ccccCceEEEEEccCCCCCCceeeccccccccccceeEEeeeeeEEeeeecccCCCCCCeEEEEEEEEeecc
Q psy7429         195 WTYDGYTVDLKHILQGPDSDKIDIGIDLQDYYLSVEWDIMKVPAVRNEKFYSCCEEPYPDIIFNITLRRKTL  266 (555)
Q Consensus       195 ~~y~~~~v~l~~~~~~~~~~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~~~~~~~~ys~l~~~l~l~R~~~  266 (555)
                      |+|++.++++.+..+.        ....+.+..++||++.+..+.++...|.||+++|+.++|+|+||||+.
T Consensus       144 w~y~~~~i~l~~~~~~--------~~~~~~~~~~~eW~l~~~~~~~~~~~y~cc~~~y~~i~~~i~lrRr~~  207 (208)
T d1uw6a_         144 WTHHSREISVDPTTEN--------SDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGR  207 (208)
T ss_dssp             SSCCTTTEEEEECCCS--------SCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCC
T ss_pred             ceeccceEEEeeccCC--------CccccccccCCCEEEEEeEEEEEEEEeCCCCCCcceEEEEEEEEECCC
Confidence            9999999999875432        233456678999999999999999999999999999999999999974
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure