Psyllid ID: psy7487

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------44
Protein Sequence
RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEcEEEccccccccccccEEEEEccccccccccccEEEEccccEEEEEcccccEEEEEEcccEEEEEEEEEEEEEEEcccccccccccEEccEEEccccccccEEEEEccccccEEcccccccccEEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEEEEHHHHHccEEEEEEEEEEccccccccccEEEEHHHHHccccccccEEEEEEEEccEEEEEEEEcccccEEEEEEEEEEEEEccEEEEEEccccEEEEEEEEEccccccccEEEEEEEcEEEEEEEEEEEcccccccccccEEEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEccccccccccEEEEEEEEEHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEEEcccccccccccccccEEcccHHHHHHcccccEEEEccccccEEEEccccEEEEEccccEEEEEEEEEEEEccccccccccccccccEEEEEEccccHccEEEEEEcccccEEEccccEccEEEEEEEEEEEEEEEEccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEcEEEEHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccHHHEEccEEEEEHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
RLESVLKlkfrsedftldfyfrqfwtdprlafrqrpgvetlsvgsdfikniwvpdtffvnekqsyfHIATTSNEFIRIHHSGSITRSIRLTITascpmnlqyfpmdrqlcHIEIESFGytmrdirykwnegpnsvgvsnevslpqfkvLGHRQKDLEislttgnysrlACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFwlnrnatpaRVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMsstnaalpkvsyIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWlnrnatpaRVALGVTTVLTMTTLmsstnaalpkisyVKSIDVYLGTCFVMVFASLLGL
Flexible Loop (DISEMBL)
rlesvlklkfrsedftldfyfRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLeislttgnysrLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMsstnaalpkvSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMsstnaalpkisYVKSIDVYLGTCFVMVFASLLGL
Low Complexity Region (SEG)
RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARvalgvttvltmttlqvlSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGvttvltmttlmsstNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGvttvltmttlmsstNAALPKISYVKSIDVYLGTCFVMVFASLLGL
Disordered region (IsUnstruct)
*****LKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL**
Disordered Region (DISOPRED)
RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL
Disordered Region (DISEMBL)
RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL
Disordered Region (DISPRO)
****VLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	439	2.2.26 [Sep-21-2011]
Q9BLY8	606	Gamma-aminobutyric acid r	N/A	N/A	0.533	0.386	0.889	1e-124
Q75NA5	576	Gamma-aminobutyric acid r	N/A	N/A	0.533	0.406	0.889	1e-124
P25123	606	Gamma-aminobutyric acid r	yes	N/A	0.533	0.386	0.852	1e-118
O18276	550	Gamma-aminobutyric acid r	no	N/A	0.539	0.430	0.464	9e-59
Q61603	456	Glycine receptor subunit	yes	N/A	0.526	0.506	0.465	3e-58
P24524	464	Glycine receptor subunit	no	N/A	0.521	0.493	0.471	2e-57
Q91XP5	464	Glycine receptor subunit	no	N/A	0.521	0.493	0.471	3e-57
O75311	464	Glycine receptor subunit	yes	N/A	0.521	0.493	0.471	3e-57
P08220	474	Gamma-aminobutyric acid r	no	N/A	0.528	0.489	0.430	4e-57
P18505	474	Gamma-aminobutyric acid r	no	N/A	0.528	0.489	0.430	4e-57

>sp|Q9BLY8|GBRB_DROSI Gamma-aminobutyric acid receptor subunit beta OS=Drosophila simulans GN=Rdl PE=2 SV=1

 Score =  446 bits (1146), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/244 (88%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 103 DFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 162

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 163 EFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 222

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 223 SVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 282

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 283 VISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 342

Query: 244 ASLL 247
           ASLL
Sbjct: 343 ASLL 346

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.
Drosophila simulans (taxid: 7240)

>sp|Q75NA5|GBRB_MUSDO Gamma-aminobutyric acid receptor subunit beta OS=Musca domestica GN=Rdl PE=1 SV=2

 Score =  445 bits (1145), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 217/244 (88%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 101 DFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 160

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 161 EFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 220

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 221 SVGVSSEVSLPQFKVLGHRQRAVEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 280

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 281 VISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 340

Query: 244 ASLL 247
           ASLL
Sbjct: 341 ASLL 344

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.

Musca domestica (taxid: 7370)

>sp|P25123|GBRB_DROME Gamma-aminobutyric acid receptor subunit beta OS=Drosophila melanogaster GN=Rdl PE=2 SV=3

 Score =  424 bits (1090), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 208/244 (85%), Positives = 221/244 (90%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 103 DFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 162

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY W +G +
Sbjct: 163 EFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLS 222

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVG+S+EV LPQF+VLGHRQ+  EI+LTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 223 SVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 282

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 283 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 342

Query: 244 ASLL 247
           ASLL
Sbjct: 343 ASLL 346

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.

Drosophila melanogaster (taxid: 7227)

>sp|O18276|GBRB_CAEEL Gamma-aminobutyric acid receptor subunit beta OS=Caenorhabditis elegans GN=gab-1 PE=2 SV=3

 Score =  228 bits (580), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 159/252 (63%), Gaps = 15/252 (5%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+TL  Y  Q+WTD RL +     ++ +++  +F +NIWVPDTF  N+K SY H  T  N
Sbjct: 98  DYTLTMYLHQYWTDERLRWSNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERN 157

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           + +RI+  G +   +RLT T SC MNL+ FP+D Q C +EIES+GYT  ++  KWN  P 
Sbjct: 158 KMLRINVDGKVAYGMRLTSTLSCSMNLRNFPLDSQNCTVEIESYGYTTSEVLMKWNY-PL 216

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           +V    +  +PQF + G   +D  +S  TG+Y RL+   Q  RS+GY++ Q Y+P  LIV
Sbjct: 217 AVHGVEQADVPQFTITGFHTEDSIVSTATGSYQRLSLVFQLRRSVGYFIFQTYLPCVLIV 276

Query: 194 AISWVSFWLNRNATPARVALGVTTVLTMTTLQV--------LSF--SIDVYLGTCFVMVF 243
            +SWVSFW+N  AT ARVALG+TTVLTMTT+          +S+  SID+YL  CFV VF
Sbjct: 277 MLSWVSFWINHEATSARVALGITTVLTMTTISTGVRQSLPRISYVKSIDIYLVMCFVFVF 336

Query: 244 ASLLG----NYS 251
           A+LL     NYS
Sbjct: 337 AALLEYAAVNYS 348

GABA, an inhibitory neurotransmitter, mediates neuronal inhibition by binding to the GABA receptor and opening an integral chloride channel.

Caenorhabditis elegans (taxid: 6239)

>sp|Q61603|GLRA4_MOUSE Glycine receptor subunit alpha-4 OS=Mus musculus GN=Glra4 PE=2 SV=3

 Score =  226 bits (575), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 115/247 (46%), Positives = 163/247 (65%), Gaps = 16/247 (6%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+ ++ + RQ W DPRLA+R+ P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct: 90  DYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 148

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           + +RI  +G++  SIRLT+  SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W E   
Sbjct: 149 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAP 208

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPSS 190
           +V V+  ++LPQF +    +KDL       N  +  C E++F   R MGYYLIQ+YIPS 
Sbjct: 209 AVQVAEGLTLPQFIL--RDEKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSL 266

Query: 191 LIVAISWVSFWLNRNATPARVALGVTTVLTMTT--------LQVLSF--SIDVYLGTCFV 240
           LIV +SWVSFW+N +A PARV LG+TTVLTMTT        L  +S+  +ID+++  C +
Sbjct: 267 LIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLL 326

Query: 241 MVFASLL 247
            VFA+LL
Sbjct: 327 FVFAALL 333

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing). May play a role in the maturation of reproductive organs.

Mus musculus (taxid: 10090)

>sp|P24524|GLRA3_RAT Glycine receptor subunit alpha-3 OS=Rattus norvegicus GN=Glra3 PE=2 SV=1

 Score =  223 bits (568), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/248 (47%), Positives = 165/248 (66%), Gaps = 19/248 (7%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+ ++ + RQ W DPRLA+ + P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct: 90  DYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 148

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKW-NEGP 132
           + +RI  +G++  SIRLT+T SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W +E P
Sbjct: 149 KLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAP 208

Query: 133 NSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPS 189
             V V+  ++LPQF  L   +KDL       N  +  C E++F   R MGYYLIQ+YIPS
Sbjct: 209 --VQVAEGLTLPQF--LLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPS 264

Query: 190 SLIVAISWVSFWLNRNATPARVALGVTTVLTMTT--------LQVLSF--SIDVYLGTCF 239
            LIV +SWVSFW+N +A PARVALG+TTVLTMTT        L  +S+  +ID+++  C 
Sbjct: 265 LLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCL 324

Query: 240 VMVFASLL 247
           + VF++LL
Sbjct: 325 LFVFSALL 332

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Rattus norvegicus (taxid: 10116)

>sp|Q91XP5|GLRA3_MOUSE Glycine receptor subunit alpha-3 OS=Mus musculus GN=Glra3 PE=2 SV=2

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/248 (47%), Positives = 165/248 (66%), Gaps = 19/248 (7%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+ ++ + RQ W DPRLA+ + P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct: 90  DYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 148

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKW-NEGP 132
           + +RI  +G++  SIRLT+T SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W +E P
Sbjct: 149 KLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAP 208

Query: 133 NSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPS 189
             V V+  ++LPQF  L   +KDL       N  +  C E++F   R MGYYLIQ+YIPS
Sbjct: 209 --VQVAEGLTLPQF--LLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPS 264

Query: 190 SLIVAISWVSFWLNRNATPARVALGVTTVLTMTT--------LQVLSF--SIDVYLGTCF 239
            LIV +SWVSFW+N +A PARVALG+TTVLTMTT        L  +S+  +ID+++  C 
Sbjct: 265 LLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCL 324

Query: 240 VMVFASLL 247
           + VF++LL
Sbjct: 325 LFVFSALL 332

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Mus musculus (taxid: 10090)

>sp|O75311|GLRA3_HUMAN Glycine receptor subunit alpha-3 OS=Homo sapiens GN=GLRA3 PE=2 SV=2

 Score =  223 bits (567), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 117/248 (47%), Positives = 165/248 (66%), Gaps = 19/248 (7%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+ ++ + RQ W DPRLA+ + P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct: 90  DYRVNIFLRQKWNDPRLAYSEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 148

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKW-NEGP 132
           + +RI  +G++  SIRLT+T SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W +E P
Sbjct: 149 KLLRIFKNGNVLYSIRLTLTLSCPMDLKNFPMDVQTCIMQLESFGYTMNDLIFEWQDEAP 208

Query: 133 NSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPS 189
             V V+  ++LPQF  L   +KDL       N  +  C E++F   R MGYYLIQ+YIPS
Sbjct: 209 --VQVAEGLTLPQF--LLKEEKDLRYCTKHYNTGKFTCIEVRFHLERQMGYYLIQMYIPS 264

Query: 190 SLIVAISWVSFWLNRNATPARVALGVTTVLTMTT--------LQVLSF--SIDVYLGTCF 239
            LIV +SWVSFW+N +A PARVALG+TTVLTMTT        L  +S+  +ID+++  C 
Sbjct: 265 LLIVILSWVSFWINMDAAPARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCL 324

Query: 240 VMVFASLL 247
           + VF++LL
Sbjct: 325 LFVFSALL 332

The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing).

Homo sapiens (taxid: 9606)

>sp|P08220|GBRB1_BOVIN Gamma-aminobutyric acid receptor subunit beta-1 OS=Bos taurus GN=GABRB1 PE=2 SV=1

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 158/244 (64%), Gaps = 12/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+TL  YF+Q W D RL++   P    L++ +     +WVPDT+F+N+K+S+ H  T  N
Sbjct: 81  DYTLTMYFQQSWKDKRLSYSGIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKN 138

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
             IR+H  G++   +R+T TA+C M+L+ +P+D Q C +EIES+GYT  DI + WN G  
Sbjct: 139 RMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEG 198

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           +V   N++ LPQF ++ ++    ++  TTG Y RL+   +  R++GY+++Q Y+PS+LI 
Sbjct: 199 AVTGVNKIELPQFSIVDYKMVSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLIT 258

Query: 194 AISWVSFWLNRNATPARVALGVTTVLTMTTLQV----------LSFSIDVYLGTCFVMVF 243
            +SWVSFW+N +A+ ARVALG+TTVLTMTT+               +ID+YL  CFV VF
Sbjct: 259 ILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVF 318

Query: 244 ASLL 247
            +LL
Sbjct: 319 LALL 322

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Bos taurus (taxid: 9913)

>sp|P18505|GBRB1_HUMAN Gamma-aminobutyric acid receptor subunit beta-1 OS=Homo sapiens GN=GABRB1 PE=2 SV=2

 Score =  222 bits (566), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 158/244 (64%), Gaps = 12/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           D+TL  YF+Q W D RL++   P    L++ +     +WVPDT+F+N+K+S+ H  T  N
Sbjct: 81  DYTLTMYFQQSWKDKRLSYSGIP--LNLTLDNRVADQLWVPDTYFLNDKKSFVHGVTVKN 138

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
             IR+H  G++   +R+T TA+C M+L+ +P+D Q C +EIES+GYT  DI + WN G  
Sbjct: 139 RMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWNGGEG 198

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           +V   N++ LPQF ++ ++    ++  TTG Y RL+   +  R++GY+++Q Y+PS+LI 
Sbjct: 199 AVTGVNKIELPQFSIVDYKMVSKKVEFTTGAYPRLSLSFRLKRNIGYFILQTYMPSTLIT 258

Query: 194 AISWVSFWLNRNATPARVALGVTTVLTMTTLQV----------LSFSIDVYLGTCFVMVF 243
            +SWVSFW+N +A+ ARVALG+TTVLTMTT+               +ID+YL  CFV VF
Sbjct: 259 ILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAIDIYLMGCFVFVF 318

Query: 244 ASLL 247
            +LL
Sbjct: 319 LALL 322

GABA, the major inhibitory neurotransmitter in the vertebrate brain, mediates neuronal inhibition by binding to the GABA/benzodiazepine receptor and opening an integral chloride channel.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
114650274	487	GABA-gated chloride channel subunit [Lao	0.533	0.480	0.901	1e-123
377550340	479	GABA-gated chloride channel subunit [Sog	0.533	0.488	0.901	1e-123
325995208	606	RE22322p [Drosophila melanogaster]	0.548	0.397	0.869	1e-123
167234243	482	GABA receptor isoform b precursor [Tribo	0.533	0.485	0.901	1e-123
387538826	401	GABA-gated chloride channel subunit, par	0.533	0.583	0.897	1e-123
167466290	482	GABA receptor isoform c precursor [Tribo	0.533	0.485	0.901	1e-123
397739453	400	GABA-gated chloride channel, partial [La	0.533	0.585	0.897	1e-123
158295192	555	AGAP006028-PB [Anopheles gambiae str. PE	0.533	0.421	0.893	1e-122
44887891	606	RecName: Full=Gamma-aminobutyric acid re	0.533	0.386	0.889	1e-122
328711150	568	PREDICTED: gamma-aminobutyric acid recep	0.533	0.411	0.897	1e-122

>gi|114650274|dbj|BAF31884.1| GABA-gated chloride channel subunit [Laodelphax striatella]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/244 (90%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAFR+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 85  DFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 144

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 145 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 204

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 205 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 264

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 265 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 324

Query: 244 ASLL 247
           ASLL
Sbjct: 325 ASLL 328

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|377550340|dbj|BAL63029.1| GABA-gated chloride channel subunit [Sogatella furcifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/244 (90%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAFR+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 86  DFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 145

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 146 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 205

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 206 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 265

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 266 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 325

Query: 244 ASLL 247
           ASLL
Sbjct: 326 ASLL 329

Source: Sogatella furcifera

Species: Sogatella furcifera

Genus: Sogatella

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325995208|gb|ADZ49077.1| RE22322p [Drosophila melanogaster]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/252 (86%), Positives = 230/252 (91%), Gaps = 11/252 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 103 DFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 162

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 163 EFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 222

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 223 SVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 282

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 283 VISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 342

Query: 244 ASLLGNYSRLAC 255
           ASLL  Y+ + C
Sbjct: 343 ASLL-EYATVGC 353

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167234243|ref|NP_001107809.1| GABA receptor isoform b precursor [Tribolium castaneum] gi|156447605|gb|ABU63595.1| GABA-gated anion channel splice variant 3b6b [Tribolium castaneum] gi|270016495|gb|EFA12941.1| resistant to dieldrin [Tribolium castaneum]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/244 (90%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAFR+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 81  DFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 140

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 141 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 200

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 201 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 260

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 261 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 320

Query: 244 ASLL 247
           ASLL
Sbjct: 321 ASLL 324

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387538826|gb|AFJ79638.1| GABA-gated chloride channel subunit, partial [Laodelphax striatella]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/244 (89%), Positives = 225/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAFR+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 51  DFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 110

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 111 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 170

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 171 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 230

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARV LGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 231 IISWVSFWLNRNATPARVNLGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 290

Query: 244 ASLL 247
           ASLL
Sbjct: 291 ASLL 294

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|167466290|ref|NP_001107764.1| GABA receptor isoform c precursor [Tribolium castaneum] gi|156447607|gb|ABU63596.1| GABA-gated anion channel splice variant 3c6b [Tribolium castaneum]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/244 (90%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAFR+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 81  DFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 140

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 141 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 200

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 201 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 260

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 261 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 320

Query: 244 ASLL 247
           ASLL
Sbjct: 321 ASLL 324

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|397739453|gb|AFO62383.1| GABA-gated chloride channel, partial [Laodelphax striatella]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/244 (89%), Positives = 225/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAFR+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 51  DFTLDFYFRQFWTDPRLAFRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 110

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 111 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 170

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 171 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 230

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARV LGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 231 IISWVSFWLNRNATPARVNLGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 290

Query: 244 ASLL 247
           ASLL
Sbjct: 291 ASLL 294

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295192|ref|XP_001688775.1| AGAP006028-PB [Anopheles gambiae str. PEST] gi|157015917|gb|EDO63781.1| AGAP006028-PB [Anopheles gambiae str. PEST]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/244 (89%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 98  DFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 157

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 158 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 217

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 218 SVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 277

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 278 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 337

Query: 244 ASLL 247
           ASLL
Sbjct: 338 ASLL 341

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|44887891|sp|Q9BLY8.1|GBRB_DROSI RecName: Full=Gamma-aminobutyric acid receptor subunit beta; AltName: Full=GABA(A) receptor; AltName: Full=Protein cyclodiene resistance; Flags: Precursor gi|12699096|gb|AAK00512.1| GABA receptor [Drosophila simulans]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/244 (88%), Positives = 226/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 103 DFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 162

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 163 EFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 222

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 223 SVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 282

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 283 VISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 342

Query: 244 ASLL 247
           ASLL
Sbjct: 343 ASLL 346

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711150|ref|XP_001947125.2| PREDICTED: gamma-aminobutyric acid receptor subunit beta-like isoform 1 [Acyrthosiphon pisum]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/244 (89%), Positives = 225/244 (92%), Gaps = 10/244 (4%)

Query: 14  DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
           DFTLDFYFRQFWTDPRLAF +RPGVETLSVGS+FIKNIWVPDTFFVNEKQSYFHIATTSN
Sbjct: 89  DFTLDFYFRQFWTDPRLAFTKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSN 148

Query: 74  EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
           EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN
Sbjct: 149 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 208

Query: 134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
           SVGVSNEVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS LIV
Sbjct: 209 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIV 268

Query: 194 AISWVSFWLNRNATPARVALGVTTVL--------TMTTLQVLSF--SIDVYLGTCFVMVF 243
            ISWVSFWLNRNATPARVALGVTTVL        T   L  +S+  SIDVYLGTCFVMVF
Sbjct: 269 IISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVF 328

Query: 244 ASLL 247
           ASLL
Sbjct: 329 ASLL 332

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	439
UNIPROTKB|Q9BLY8	606	Rdl "Gamma-aminobutyric acid r	0.601	0.435	0.771	1.9e-108
UNIPROTKB|Q75NA5	576	Rdl "Gamma-aminobutyric acid r	0.601	0.458	0.771	2.4e-108
FB|FBgn0004244	606	Rdl "Resistant to dieldrin" [D	0.601	0.435	0.739	3.7e-103
WB|WBGene00006784	1095	unc-49 [Caenorhabditis elegans	0.432	0.173	0.511	8.8e-95
WB|WBGene00017389	459	lgc-38 [Caenorhabditis elegans	0.564	0.540	0.490	3.4e-61
WB|WBGene00001512	550	gab-1 [Caenorhabditis elegans	0.530	0.423	0.418	1.2e-49
FB|FBgn0010240	496	Lcch3 "Ligand-gated chloride c	0.528	0.467	0.393	8.7e-49
ZFIN|ZDB-GENE-020402-2	537	glra4b "glycine receptor, alph	0.521	0.426	0.427	4.7e-48
UNIPROTKB|E1BHI1	457	GLRA4 "Uncharacterized protein	0.526	0.505	0.421	6e-48
MGI|MGI:95750	456	Glra4 "glycine receptor, alpha	0.526	0.506	0.421	6e-48

UNIPROTKB|Q9BLY8 Rdl "Gamma-aminobutyric acid receptor subunit beta" [Drosophila simulans (taxid:7240)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 216/280 (77%), Positives = 228/280 (81%)

Query:     5 VLKLKFRSE---DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
             VL +   SE   DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNE
Sbjct:    91 VLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNE 150

Query:    62 KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
             KQSYFHIATTSNEFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM
Sbjct:   151 KQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 210

Query:   122 RDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYY 181
             RDIRYKWNEGPNSVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYY
Sbjct:   211 RDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAMEISLTTGNYSRLACEIQFVRSMGYY 270

Query:   182 LIQIYIPSSLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXX--------SF--SI 231
             LIQIYIPS LIV ISWVSFWLNRNATPAR                         S+  SI
Sbjct:   271 LIQIYIPSGLIVVISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSI 330

Query:   232 DVYLGTCFVMVFASLL--GNYSRLACEIQFVRSMGYYLIQ 269
             DVYLGTCFVMVFASLL       +A  IQ +R   +  IQ
Sbjct:   331 DVYLGTCFVMVFASLLEYATVGYMAKRIQ-MRKQRFMAIQ 369

GO:0006811 "ion transport" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0030594 "neurotransmitter receptor activity" evidence=ISS

UNIPROTKB|Q75NA5 Rdl "Gamma-aminobutyric acid receptor subunit beta" [Musca domestica (taxid:7370)]

 Score = 1071 (382.1 bits), Expect = 2.4e-108, P = 2.4e-108
 Identities = 216/280 (77%), Positives = 228/280 (81%)

Query:     5 VLKLKFRSE---DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
             VL +   SE   DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNE
Sbjct:    89 VLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNE 148

Query:    62 KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
             KQSYFHIATTSNEFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM
Sbjct:   149 KQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 208

Query:   122 RDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYY 181
             RDIRYKWNEGPNSVGVS+EVSLPQFKVLGHRQ+ +EISLTTGNYSRLACEIQFVRSMGYY
Sbjct:   209 RDIRYKWNEGPNSVGVSSEVSLPQFKVLGHRQRAVEISLTTGNYSRLACEIQFVRSMGYY 268

Query:   182 LIQIYIPSSLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXX--------SF--SI 231
             LIQIYIPS LIV ISWVSFWLNRNATPAR                         S+  SI
Sbjct:   269 LIQIYIPSGLIVVISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSI 328

Query:   232 DVYLGTCFVMVFASLL--GNYSRLACEIQFVRSMGYYLIQ 269
             DVYLGTCFVMVFASLL       +A  IQ +R   +  IQ
Sbjct:   329 DVYLGTCFVMVFASLLEYATVGYMAKRIQ-MRKQRFMTIQ 367

GO:0001505 "regulation of neurotransmitter levels" evidence=ISS

GO:0006836 "neurotransmitter transport" evidence=ISS

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=ISS

GO:0008503 "benzodiazepine receptor activity" evidence=ISS

GO:0030285 "integral to synaptic vesicle membrane" evidence=ISS

FB|FBgn0004244 Rdl "Resistant to dieldrin" [Drosophila melanogaster (taxid:7227)]

 Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
 Identities = 207/280 (73%), Positives = 223/280 (79%)

Query:     5 VLKLKFRSE---DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
             VL +   SE   DFTLDFYFRQFWTDPRLA+R+RPGVETLSVGS+FIKNIWVPDTFFVNE
Sbjct:    91 VLSISSVSEVLMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNE 150

Query:    62 KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
             KQSYFHIATTSNEFIR+HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM
Sbjct:   151 KQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 210

Query:   122 RDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYY 181
             RDIRY W +G +SVG+S+EV LPQF+VLGHRQ+  EI+LTTGNYSRLACEIQFVRSMGYY
Sbjct:   211 RDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYY 270

Query:   182 LIQIYIPSSLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXX--------SF--SI 231
             LIQIYIPS LIV ISWVSFWLNRNATPAR                         S+  SI
Sbjct:   271 LIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSI 330

Query:   232 DVYLGTCFVMVFASLL--GNYSRLACEIQFVRSMGYYLIQ 269
             DVYLGTCFVMVFASLL       +A  IQ +R   +  IQ
Sbjct:   331 DVYLGTCFVMVFASLLEYATVGYMAKRIQ-MRKQRFMAIQ 369

GO:0005886 "plasma membrane" evidence=ISS

GO:0046682 "response to cyclodiene" evidence=NAS

GO:0004890 "GABA-A receptor activity" evidence=IEA;NAS;TAS

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0050805 "negative regulation of synaptic transmission" evidence=IMP

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=IGI

GO:0030424 "axon" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0090328 "regulation of olfactory learning" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0042749 "regulation of circadian sleep/wake cycle" evidence=IMP

WB|WBGene00006784 unc-49 [Caenorhabditis elegans (taxid:6239)]

 Score = 502 (181.8 bits), Expect = 8.8e-95, Sum P(3) = 8.8e-95
 Identities = 112/219 (51%), Positives = 144/219 (65%)

Query:    14 DFTLDFYFRQFWTDPRLAFRQRP-G----VETLSVGSDFIKNIWVPDTFFVNEKQSYFHI 68
             DFTLDFY RQ W DPRLAF     G    +++L+VG D++  +W PDTFF NEK+S+FH+
Sbjct:    80 DFTLDFYMRQTWQDPRLAFGSLDLGLSKEIDSLTVGVDYLDRLWKPDTFFPNEKKSFFHL 139

Query:    69 ATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIES---------F-- 117
             ATT N F+RI   G++  S RLT+TA+CPM+L+ FPMD Q C +EIES         F  
Sbjct:   140 ATTHNSFLRIEGDGTVYTSQRLTVTATCPMDLKLFPMDSQHCKLEIESCKSLCSPDIFSP 199

Query:   118 -GYTMRDIRYKWNEGPNSVGVSNEVSLPQF-----KVLGHRQKDLEISLTTGNYSRLACE 171
              GY++ DI Y  +E   SV   +   LPQF     KV+ H QK     L++G YSRL   
Sbjct:   200 NGYSILDIMYVSHE-KKSVSTES-YELPQFVLQSIKVVNHTQK-----LSSGEYSRLCWF 252

Query:   172 IQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPAR 210
               F R++G+Y+IQIY+PS LIV ISWVSFWL+R+ATPAR
Sbjct:   253 FLFKRNIGFYIIQIYLPSVLIVVISWVSFWLSRDATPAR 291

GO:0045211 "postsynaptic membrane" evidence=IEA;IDA

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0043058 "regulation of backward locomotion" evidence=IMP

GO:0007214 "gamma-aminobutyric acid signaling pathway" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

WB|WBGene00017389 lgc-38 [Caenorhabditis elegans (taxid:6239)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 129/263 (49%), Positives = 170/263 (64%)

Query:    12 SEDFTLDFYFRQFWTDPRLAFRQRPGVE-TLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
             S D+TLD Y RQ W DPRLA+     VE +L++G D +K IW PDTFF NEK+S+FH AT
Sbjct:    93 SMDYTLDLYLRQIWKDPRLAWES--DVEDSLTIGIDMVKTIWTPDTFFPNEKKSFFHEAT 150

Query:    71 TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
             + N F+RI + G++ RSIRLT+TA+CPM+L  FP+DRQ C +E+ES+GY+ +DI Y W+ 
Sbjct:   151 SHNSFLRIDNHGNVLRSIRLTVTANCPMSLHTFPLDRQECALEVESYGYSTKDIIYHWH- 209

Query:   131 GPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSS 190
             G N+V +   V L  F +  H+  +  ISL+TGNYSRL     F R++G+YLIQIY PSS
Sbjct:   210 GTNAVTIDENVHLAHFTIGEHKHIERTISLSTGNYSRLTAYFLFKRNIGFYLIQIYFPSS 269

Query:   191 LIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXX--------SF--SIDVYLGTCFV 240
             LIV ISWVSFWLNR A  AR                         S+  S+DV+LG CF 
Sbjct:   270 LIVVISWVSFWLNREAVQARVAIGVTTVLTMTTLMTSTNASLPKVSYVKSLDVFLGVCFF 329

Query:   241 MVFASLLGNYSRLACEIQFVRSM 263
             +VFASLL  Y+ +   ++  RS+
Sbjct:   330 IVFASLL-EYAAIGYLMKRNRSV 351

GO:0004890 "GABA-A receptor activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00001512 gab-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 102/244 (41%), Positives = 141/244 (57%)

Query:    14 DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
             D+TL  Y  Q+WTD RL +     ++ +++  +F +NIWVPDTF  N+K SY H  T  N
Sbjct:    98 DYTLTMYLHQYWTDERLRWSNEIPIDEMTLSGEFSQNIWVPDTFLANDKHSYLHEVTERN 157

Query:    74 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
             + +RI+  G +   +RLT T SC MNL+ FP+D Q C +EIES+GYT  ++  KWN  P 
Sbjct:   158 KMLRINVDGKVAYGMRLTSTLSCSMNLRNFPLDSQNCTVEIESYGYTTSEVLMKWNY-PL 216

Query:   134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIV 193
             +V    +  +PQF + G   +D  +S  TG+Y RL+   Q  RS+GY++ Q Y+P  LIV
Sbjct:   217 AVHGVEQADVPQFTITGFHTEDSIVSTATGSYQRLSLVFQLRRSVGYFIFQTYLPCVLIV 276

Query:   194 AISWVSFWLNRNATPARXXXXXXXXXXXXXXXXX--------SF--SIDVYLGTCFVMVF 243
              +SWVSFW+N  AT AR                         S+  SID+YL  CFV VF
Sbjct:   277 MLSWVSFWINHEATSARVALGITTVLTMTTISTGVRQSLPRISYVKSIDIYLVMCFVFVF 336

Query:   244 ASLL 247
             A+LL
Sbjct:   337 AALL 340

GO:0006811 "ion transport" evidence=IEA;IDA

GO:0004890 "GABA-A receptor activity" evidence=IEA;IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA;IDA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0007268 "synaptic transmission" evidence=ISS

GO:0045202 "synapse" evidence=IC

FB|FBgn0010240 Lcch3 "Ligand-gated chloride channel homolog 3" [Drosophila melanogaster (taxid:7227)]

 Score = 486 (176.1 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
 Identities = 100/254 (39%), Positives = 142/254 (55%)

Query:    14 DFTLDFYFRQFWTDPRLAFR---------QRPGV-ETLSVGSDFIKNIWVPDTFFVNEKQ 63
             D+T+  Y  Q+W D RLAF             G+ + L++  DF + IWVPDTFF N+K 
Sbjct:    84 DYTITMYLNQYWRDERLAFNIFGQYFDDENDDGISDVLTLSGDFAEKIWVPDTFFANDKN 143

Query:    64 SYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRD 123
             S+ H  T  N+ +R+   G++T  +R T T +C M+L Y+P+D Q C +EIES+GYT+ D
Sbjct:   144 SFLHDVTERNKLVRLGGDGAVTYGMRFTTTLACMMDLHYYPLDSQNCTVEIESYGYTVSD 203

Query:   124 IRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLI 183
             +   W   P   GV  +  LPQF ++G+   D +  L TG Y RL+   +  R++GY++ 
Sbjct:   204 VVMYWKPTPVR-GVE-DAELPQFTIIGYETNDRKERLATGVYQRLSLSFKLQRNIGYFVF 261

Query:   184 QIYIPSSLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXX--------SF--SIDV 233
             Q Y+PS LIV +SWVSFW+N  AT AR                         S+  +ID+
Sbjct:   262 QTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDI 321

Query:   234 YLGTCFVMVFASLL 247
             YL  CFV VFA+LL
Sbjct:   322 YLVMCFVFVFAALL 335

GO:0005886 "plasma membrane" evidence=IDA

GO:0004890 "GABA-A receptor activity" evidence=NAS;IDA

GO:0016021 "integral to membrane" evidence=IEA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

ZFIN|ZDB-GENE-020402-2 glra4b "glycine receptor, alpha 4b" [Danio rerio (taxid:7955)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 106/248 (42%), Positives = 151/248 (60%)

Query:    14 DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
             D+ L+ + RQ W DPRLA+++ P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct:   135 DYRLNVFLRQQWNDPRLAYKEYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 193

Query:    74 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKW-NEGP 132
             + +RI  +G++  SIRLT+  SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W +EGP
Sbjct:   194 KLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDTQTCTMQLESFGYTMNDLIFQWLDEGP 253

Query:   133 NSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPS 189
               V V++++ LPQF VL   +KDL       N  +  C E++F   R MGYYLIQ+YIPS
Sbjct:   254 --VQVADDLMLPQF-VL-KEEKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPS 309

Query:   190 SLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXXSFS----------IDVYLGTCF 239
              L V +SWVSFW+N +A PAR                 S +          ID+++  C 
Sbjct:   310 LLTVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCL 369

Query:   240 VMVFASLL 247
             + VFA+LL
Sbjct:   370 LFVFAALL 377

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045202 "synapse" evidence=IEA

UNIPROTKB|E1BHI1 GLRA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 104/247 (42%), Positives = 149/247 (60%)

Query:    14 DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
             D+ ++ + RQ W DPRLA+R+ P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct:    91 DYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 149

Query:    74 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
             + +RI  +G++  SIRLT+  SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W E   
Sbjct:   150 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAP 209

Query:   134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPSS 190
             +V V+  ++LPQF +L   +KDL       N  +  C E++F   R MGYYLIQ+YIPS 
Sbjct:   210 AVQVAEGLTLPQF-IL-RDEKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSL 267

Query:   191 LIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXXSFS----------IDVYLGTCFV 240
             LIV +SWVSFW+N +A PAR                 S +          ID+++  C +
Sbjct:   268 LIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLL 327

Query:   241 MVFASLL 247
              VFA+LL
Sbjct:   328 FVFAALL 334

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

MGI|MGI:95750 Glra4 "glycine receptor, alpha 4 subunit" [Mus musculus (taxid:10090)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 104/247 (42%), Positives = 149/247 (60%)

Query:    14 DFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSN 73
             D+ ++ + RQ W DPRLA+R+ P  ++L +    + +IW PD FF NEK + FH  TT N
Sbjct:    90 DYRVNVFLRQQWNDPRLAYREYPD-DSLDLDPSMLDSIWKPDLFFANEKGANFHEVTTDN 148

Query:    74 EFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN 133
             + +RI  +G++  SIRLT+  SCPM+L+ FPMD Q C +++ESFGYTM D+ ++W E   
Sbjct:   149 KLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTMNDLMFEWLEDAP 208

Query:   134 SVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLAC-EIQF--VRSMGYYLIQIYIPSS 190
             +V V+  ++LPQF +L   +KDL       N  +  C E++F   R MGYYLIQ+YIPS 
Sbjct:   209 AVQVAEGLTLPQF-IL-RDEKDLGYCTKHYNTGKFTCIEVKFHLERQMGYYLIQMYIPSL 266

Query:   191 LIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXXSFS----------IDVYLGTCFV 240
             LIV +SWVSFW+N +A PAR                 S +          ID+++  C +
Sbjct:   267 LIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLL 326

Query:   241 MVFASLL 247
              VFA+LL
Sbjct:   327 FVFAALL 333

GO:0005216 "ion channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006821 "chloride transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0022824 "transmitter-gated ion channel activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0034707 "chloride channel complex" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P25123	GBRB_DROME	No assigned EC number	0.8524	0.5330	0.3861	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	439
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	2e-77
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	1e-44
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	6e-36
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	2e-32
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	8e-29
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	5e-25
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	5e-18

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  247 bits (633), Expect = 2e-77
 Identities = 109/248 (43%), Positives = 144/248 (58%), Gaps = 17/248 (6%)

Query: 14  DFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATT 71
           D+T + + RQ WTD RL +   + PGV  +    D   +IWVPD FF NEK + FH  T 
Sbjct: 75  DYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDD---SIWVPDIFFYNEKDARFHGITM 131

Query: 72  SNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE- 130
           +N  +RIH +GS+  S R+T+T +CPM+L+ FP D Q C ++ ES+GYT  DI+ +W E 
Sbjct: 132 TNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQ 191

Query: 131 GPNSVGVSNEVSLPQFKVLGHRQKDLEIS-LTTGNYSRLACEIQFVRSMGYYLIQIYIPS 189
           G   V  S  +SLP+F++LG        S   TG Y  L       R   YYL+Q+YIPS
Sbjct: 192 GAVQVDDSLFISLPEFELLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPS 251

Query: 190 SLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS----------IDVYLGTCF 239
            LIV +SWVSFWL  +A+ ARV+LG+TT+LTMTT                 IDVY   C 
Sbjct: 252 ILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAVCM 311

Query: 240 VMVFASLL 247
             VF +LL
Sbjct: 312 AFVFLALL 319

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score =  154 bits (391), Expect = 1e-44
 Identities = 51/179 (28%), Positives = 83/179 (46%), Gaps = 11/179 (6%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
           L  ++ +  +++D T + + RQ WTD RLA+      G+ +L + SD    IW PD    
Sbjct: 34  LTQIIDVDEKNQDLTTNVWLRQQWTDERLAWDPEDYGGITSLRLPSD---KIWKPDIVLY 90

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N K    H  TT N  +R++  G++  S      +SCPM+L YFP D+Q C ++  S+ Y
Sbjct: 91  N-KADGIHDITTPNTNVRVYPDGTVLWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTY 149

Query: 120 TMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISL----TTGNYSRLACEIQF 174
              ++  +W +      +  E+ L  F   G        +       G YS L  ++ F
Sbjct: 150 NGEEVDLRWKDDTP-PILDEEIDLSDFTENGEWDIVDVPAKRNEYPYGCYSELYPDVTF 207

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  137 bits (347), Expect = 6e-36
 Identities = 52/95 (54%), Positives = 64/95 (67%)

Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMT 402
           G Y  L       R   YYL+Q+YIPS LIVI+SWVSFWL  +A+ ARV+LG+TT+LTMT
Sbjct: 225 GEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMT 284

Query: 403 TLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
           T  S    +LP +SYVK+IDVY   C   VF +LL
Sbjct: 285 TFSSGVRESLPAVSYVKAIDVYFAVCMAFVFLALL 319

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score =  127 bits (321), Expect = 2e-32
 Identities = 51/95 (53%), Positives = 62/95 (65%)

Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
           G Y  L       R   YYL+Q+Y+PSILIV +SWVSFWL   A+ ARV+LG+TT+LTMT
Sbjct: 225 GEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMT 284

Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
           T  S    +LP VSY+K+IDVY   C   VF  LL
Sbjct: 285 TFSSGVRESLPAVSYVKAIDVYFAVCMAFVFLALL 319

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score =  112 bits (282), Expect = 8e-29
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 365 IYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVY 424
           + IP  LI  +SW+ FWL  +A P +V LG+TT+LTMT  +     +LPK SYV  +   
Sbjct: 1   LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGK 60

Query: 425 LGTCFVMVFASLL 437
                + VF + +
Sbjct: 61  YLVFTMFVFTASV 73

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score =  102 bits (256), Expect = 5e-25
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query: 270 IYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVY 329
           + +P +LI  +SW+ FWL   A   +V LG+TT+LTMT  +     +LPK SY+  +   
Sbjct: 1   LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGK 60

Query: 330 LGTCFVMVFACLL 342
                + VF   +
Sbjct: 61  YLVFTMFVFTASV 73

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 82.3 bits (204), Expect = 5e-18
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 185 IYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL--------SFS--IDVY 234
           + IP  LI  +SW+ FWL  +A P +V LG+TT+LTMT   +L        S+   +   
Sbjct: 1   LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGK 60

Query: 235 LGTCFVMVFASLL 247
                + VF + +
Sbjct: 61  YLVFTMFVFTASV 73

This family includes the four transmembrane helices that form the ion channel. Length = 228

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	439
KOG3643|consensus	459		100.0
KOG3644|consensus	457		100.0
KOG3642|consensus	466		100.0
TIGR00860	459	LIC Cation transporter family protein. selective w	100.0
KOG3646|consensus	486		100.0
KOG3645|consensus	449		100.0
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	100.0
KOG3643|consensus	459		99.98
KOG3644|consensus	457		99.55
KOG3642|consensus	466		99.55
TIGR00860	459	LIC Cation transporter family protein. selective w	99.5
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	99.39
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	98.87
KOG3645|consensus	449		96.8
KOG3646|consensus	486		85.02

>KOG3643|consensus

Probab=100.00  E-value=5.3e-68  Score=504.90  Aligned_cols=265  Identities=51%  Similarity=0.938  Sum_probs=246.8

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEeec
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHS   81 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~~   81 (439)
                      +.||.+|+|++|+||++++++|.|+||||+|+ .++++++.++.++.++||.||.+|.|+|++.+|+.+.+|.++|+++|
T Consensus        67 VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~-~~~~~slTl~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~d  145 (459)
T KOG3643|consen   67 VASIDAVSEVNMDYTLTMYLRQTWRDPRLAYS-SKNIDSLTLDVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPD  145 (459)
T ss_pred             EeeechhccccchhhhhhhhhhhhcCcccccC-CCCCceEEEchhhhhccccCceecccCcccccceeeecceEEEEcCC
Confidence            67999999999999999999999999999999 45678999999999999999999999999999999999999999999


Q ss_pred             ceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEeecC
Q psy7487          82 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLT  161 (439)
Q Consensus        82 G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~  161 (439)
                      |+|.|+.|++.++.|+|||++||+|+|+|+++++||+|+.+|+.+.|..+++++...++.++|||.+.+.........+.
T Consensus       146 GtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~s  225 (459)
T KOG3643|consen  146 GTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFS  225 (459)
T ss_pred             CeEEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEc
Confidence            99999999999999999999999999999999999999999999999998888988889999999999999999999999


Q ss_pred             CCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhhhhHHHH
Q psy7487         162 TGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCFVM  241 (439)
Q Consensus       162 ~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~~~~~~~  241 (439)
                      +|+|+++.++|.++|+.+||++|+|+|+.+++++||++||++.++.++|+++|                           
T Consensus       226 TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lG---------------------------  278 (459)
T KOG3643|consen  226 TGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALG---------------------------  278 (459)
T ss_pred             cccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeec---------------------------
Confidence            99999999999999999999999999999998888888888777655555555                           


Q ss_pred             HHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCCee
Q psy7487         242 VFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS  321 (439)
Q Consensus       242 v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~~~  321 (439)
                                                                                +|++|||++++.+.+.+||+++
T Consensus       279 ----------------------------------------------------------ITTVLTMTTl~t~~n~slPrvS  300 (459)
T KOG3643|consen  279 ----------------------------------------------------------ITTVLTMTTLMTSTNESLPRVS  300 (459)
T ss_pred             ----------------------------------------------------------eehHHhHHHHHhhhhccCCCcc
Confidence                                                                      4888888888899999999999


Q ss_pred             EeeeeeEEEeeeeEEeeeecccc--cccchhhH
Q psy7487         322 YIKSIDVYLGTCFVMVFACLLGN--YSRLACEI  352 (439)
Q Consensus       322 y~~~~d~~~~~c~~~~~~~l~~~--~s~l~~~~  352 (439)
                      |+|++|+|++.||.|+|++++|+  ++++....
T Consensus       301 YVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~~  333 (459)
T KOG3643|consen  301 YVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKRR  333 (459)
T ss_pred             ceeeehhhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999  66665544

>KOG3644|consensus

Probab=100.00  E-value=4.5e-60  Score=470.91  Aligned_cols=257  Identities=42%  Similarity=0.795  Sum_probs=226.4

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccC-CC-CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR-QR-PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~-~~-~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +++|.+++|.+|+|++|++++|+|.||||+++ .. +........-...++||.||++|.|++.+.+|..+.+|..+.|+
T Consensus        74 vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~  153 (457)
T KOG3644|consen   74 VQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIF  153 (457)
T ss_pred             EEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEe
Confidence            67899999999999999999999999999988 32 21111111111113699999999999999999999999999999


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS  159 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~  159 (439)
                      +||+|.++.|++++.+|+|||++||+|+|+|.+.++||+|+.+|++++|.+.+ ++..+++..+||+++.+.+..++.. 
T Consensus       154 pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~-pv~~~~~i~LPdf~l~~~~~~~~~~-  231 (457)
T KOG3644|consen  154 PNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN-PVQVKKDIKLPDFSLPSFSTEKCTG-  231 (457)
T ss_pred             cCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC-CcccccCccCCceeccceeeccccc-
Confidence            99999999999999999999999999999999999999999999999999864 8888888889998886643321110 


Q ss_pred             cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhhhhHH
Q psy7487         160 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCF  239 (439)
Q Consensus       160 ~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~~~~~  239 (439)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (457)
T KOG3644|consen  232 --------------------------------------------------------------------------------  231 (457)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCC
Q psy7487         240 VMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPK  319 (439)
Q Consensus       240 ~~v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~  319 (439)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (457)
T KOG3644|consen  232 --------------------------------------------------------------------------------  231 (457)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeE
Q psy7487         320 VSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL  399 (439)
Q Consensus       320 ~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~l  399 (439)
                                       .+  ..|.|+|+.+++.++|+.|||++|.|+|+.|+|++||+||||+++|.|||++||+|++|
T Consensus       232 -----------------~y--~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLL  292 (457)
T KOG3644|consen  232 -----------------SY--TTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLL  292 (457)
T ss_pred             -----------------cc--cCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHH
Confidence                             11  26778888888889999999999999999999999999999999999999999999999


Q ss_pred             EEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487         400 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL  439 (439)
Q Consensus       400 t~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~  439 (439)
                      |++|+.++.+.+||+|||+||||+|+++|+.|||++|+|+
T Consensus       293 tLttq~~~i~~~LP~VSYvKAIDVWm~~C~~FIF~sLlE~  332 (457)
T KOG3644|consen  293 TLTTQSGGIRRNLPKVSYVKAIDVWMGVCMTFIFGSLLEL  332 (457)
T ss_pred             HHHHHhcchhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999996

>KOG3642|consensus

Probab=100.00  E-value=1.7e-56  Score=429.03  Aligned_cols=254  Identities=44%  Similarity=0.821  Sum_probs=227.0

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEeec
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHS   81 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~~   81 (439)
                      +++++.+++.+|++++|++++|+|.|+||++|..  .+.+.+...+..+||+||.+|.|++++..|..+.+|.++||..|
T Consensus        76 V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~--~~~L~Ln~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~d  153 (466)
T KOG3642|consen   76 VRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGP--QEALPLNSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYID  153 (466)
T ss_pred             EeecccccccCceEEEEEEEEEeehhhhhcccCc--chhhccchhhhcCcccCCcccccCcccceeeccCCCceEEEeEC
Confidence            5788999999999999999999999999999942  34477777788899999999999999999999999999999999


Q ss_pred             ceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecC--ccccCceEEeeeEEeeeEee
Q psy7487          82 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSN--EVSLPQFKVLGHRQKDLEIS  159 (439)
Q Consensus        82 G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~~~~  159 (439)
                      |+|.|+.|++..+.|+|++.+||||.|.|+++|+|++|..+|+.++|...  ++++++  .+++.|+++.+.....+...
T Consensus       154 G~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~~--~VeV~~~~~~~L~Qf~l~g~~~~te~i~  231 (466)
T KOG3642|consen  154 GTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKKR--SVEVNETDSWSLDQFDLLGVSVGTEDIK  231 (466)
T ss_pred             CcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEEEEecc--cEEEcCCCCccccceeeecccccccceE
Confidence            99999999999999999999999999999999999999999999999875  455544  35688888877443321110


Q ss_pred             cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhhhhHH
Q psy7487         160 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYLGTCF  239 (439)
Q Consensus       160 ~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~~~~~  239 (439)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (466)
T KOG3642|consen  232 --------------------------------------------------------------------------------  231 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCC
Q psy7487         240 VMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPK  319 (439)
Q Consensus       240 ~~v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~  319 (439)
                                                                                                      
T Consensus       232 --------------------------------------------------------------------------------  231 (466)
T KOG3642|consen  232 --------------------------------------------------------------------------------  231 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeE
Q psy7487         320 VSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL  399 (439)
Q Consensus       320 ~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~l  399 (439)
                                          .-.|.|+-++..|+++|++|||++|+|+||+|.|++||||||+++|++|||+.+|||++|
T Consensus       232 --------------------t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVL  291 (466)
T KOG3642|consen  232 --------------------TSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVL  291 (466)
T ss_pred             --------------------ecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeee
Confidence                                122355666778899999999999999999999999999999999999999999999999


Q ss_pred             EEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487         400 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL  439 (439)
Q Consensus       400 t~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~  439 (439)
                      ||+|++..+|+++|||||++|+|++.++||+|+|+||+|.
T Consensus       292 TMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFsaliEf  331 (466)
T KOG3642|consen  292 TMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFAALVEF  331 (466)
T ss_pred             eeeeeeehhccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999984

>TIGR00860 LIC Cation transporter family protein

Probab=100.00  E-value=1.6e-51  Score=418.29  Aligned_cols=254  Identities=43%  Similarity=0.739  Sum_probs=227.9

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||  ++|++.+.++++   +||+||+++.|++++.++.....+..++++
T Consensus        63 l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~~~---~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~  139 (459)
T TIGR00860        63 LRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDD---SIWVPDIFFYNEKDARFHGITMTNVLVRIH  139 (459)
T ss_pred             EEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceecccccc---ccccCcEEeecCccccccccccCceEEEEc
Confidence            578999999999999999999999999999998  479999999998   999999999999998888777778778888


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceee--cCccccCceEEeeeEEe-ee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGV--SNEVSLPQFKVLGHRQK-DL  156 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~--~~~~~~~~w~l~~~~~~-~~  156 (439)
                      +||+|.|..|...++.|+||+++||||+|+|+++|+||+|+.+++++.|.++ +.+..  +.+..++||++.+.... ..
T Consensus       140 ~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~~-~~v~~~~~~~~~~~eW~l~~~~~~~~~  218 (459)
T TIGR00860       140 PNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQ-GAVQVDDSLFISLPEFELLGVYGTRYC  218 (459)
T ss_pred             CCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEECCC-CceEechhhccccCceEEEeeeeeeeE
Confidence            8999999999999999999999999999999999999999999999999765 23333  33447999999985443 33


Q ss_pred             EeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         157 EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       157 ~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                      ...+++++|+++++++++||+++||++++++|++++++++|++||+|+++.++|+++|+|++|++++++..         
T Consensus       219 ~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S  298 (459)
T TIGR00860       219 TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVS  298 (459)
T ss_pred             ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcc
Confidence            45567889999999999999999999999999999999999999999997799999999999999998876         


Q ss_pred             -hhhhhhhhhhHHHHHHHHHhhhhccceeeEEE
Q psy7487         228 -SFSIDVYLGTCFVMVFASLLGNYSRLACEIQF  259 (439)
Q Consensus       228 -~~~i~~~~~~~~~~v~~slle~~~~l~~~~~~  259 (439)
                       +|+||+|+++|++++++|++++...+..+.+.
T Consensus       299 ~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~  331 (459)
T TIGR00860       299 YVKAIDVYFAVCMAFVFLALLETAFVNYVHHKD  331 (459)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhheeEEccC
Confidence             48999999999999999999998877766544

selective while glycine receptors are anion selective).

>KOG3646|consensus

Probab=100.00  E-value=6e-48  Score=369.18  Aligned_cols=252  Identities=19%  Similarity=0.385  Sum_probs=234.4

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      ++||.++||+||.+++++|++++|+|.+|+|||  +||++.++.|.+   +||+||+.++|+.+.+|+.....|  +.++
T Consensus        60 lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~---~iWkPDVLLYNSade~FDsTy~tN--~Vv~  134 (486)
T KOG3646|consen   60 LQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGG---NIWKPDVLLYNSADEQFDSTYKTN--YVVY  134 (486)
T ss_pred             EeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeeccCCc---cccCCceeccccccccCCCcceee--EEEc
Confidence            689999999999999999999999999999998  699999999998   999999999999999887765555  8899


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe-
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI-  158 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~-  158 (439)
                      +||.|.|.++...+++|.+|.+.||||.|.|.++||||.|+...++++........+.+.+..++||++.+...++.+. 
T Consensus       135 ~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~  214 (486)
T KOG3646|consen  135 STGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKT  214 (486)
T ss_pred             cCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeeeccccCCcchhhcccCCceeeccccccceeee
Confidence            9999999999999999999999999999999999999999999999988776556788889999999999988766554 


Q ss_pred             -ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh----------
Q psy7487         159 -SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL----------  227 (439)
Q Consensus       159 -~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~----------  227 (439)
                       .+|+++|+++++++++|||..||..|+++|++++.++++++|-+|+|+ +||+++++|++|+.++|+.+          
T Consensus       215 y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSe  293 (486)
T KOG3646|consen  215 YDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSE  293 (486)
T ss_pred             cccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccc
Confidence             456999999999999999999999999999999999999999999988 89999999999999999987          


Q ss_pred             -hhhhhhhhhhHHHHHHHHHhhhhccceeeEEE
Q psy7487         228 -SFSIDVYLGTCFVMVFASLLGNYSRLACEIQF  259 (439)
Q Consensus       228 -~~~i~~~~~~~~~~v~~slle~~~~l~~~~~~  259 (439)
                       +|++|+||..|++++.+|+.-+..+++.|.+.
T Consensus       294 aVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~  326 (486)
T KOG3646|consen  294 AVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRT  326 (486)
T ss_pred             cccHHHHHHHHHHHHHHhhheeEEEEEeeeccC
Confidence             49999999999999999999998888887764

>KOG3645|consensus

Probab=100.00  E-value=1.8e-45  Score=372.80  Aligned_cols=253  Identities=26%  Similarity=0.452  Sum_probs=225.7

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|.+++++|+.++|+|+||+|||  ++|++.+++|.+   +||+||++++|+.++++......+  +.++
T Consensus        63 l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp~~---~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~  137 (449)
T KOG3645|consen   63 LYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVPSS---KIWLPDIVLYNNADGDFEVEDLTN--VLVT  137 (449)
T ss_pred             EEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEecHH---HcCcCcEEEEecccccccccccce--EEEE
Confidence            678999999999999999999999999999999  589999999999   999999999998877766655555  8999


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEE-EEecCCCCceeecCccccCceEEeeeEEeeeEe
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIR-YKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI  158 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~-l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~  158 (439)
                      ++|+|.+..+...++.|++|+++||||.|+|.++|+||.|+.+++. +.........+.++..+++||++.+........
T Consensus       138 ~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~  217 (449)
T KOG3645|consen  138 YTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDLNAQTIEVDLSDFIENSEWELLSVTVVREEK  217 (449)
T ss_pred             ECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCccccceeeeccccccCCHHHcCCCCcEEEEeeeeEEeec
Confidence            9999999999999999999999999999999999999999999876 543332211566778889999999998877666


Q ss_pred             ec--CCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         159 SL--TTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       159 ~~--~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                      .+  +++.|+++.+++++||+|.||++++++||+++.+++.++||+|+++.++|+++|+|++|+|++++.+         
T Consensus       218 ~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts  297 (449)
T KOG3645|consen  218 KYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTS  297 (449)
T ss_pred             ccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCcc
Confidence            54  5677999999999999999999999999999999999999999888779999999999999999765         


Q ss_pred             --hhhhhhhhhhHHHHHHHHHhhhhccceeeEEE
Q psy7487         228 --SFSIDVYLGTCFVMVFASLLGNYSRLACEIQF  259 (439)
Q Consensus       228 --~~~i~~~~~~~~~~v~~slle~~~~l~~~~~~  259 (439)
                        +|+||.|+.++++++++|++.+.-.+..+.+.
T Consensus       298 ~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~  331 (449)
T KOG3645|consen  298 SVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRS  331 (449)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHheeEEeeeccc
Confidence              39999999999999999999987777666654

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=100.00  E-value=6.8e-32  Score=249.73  Aligned_cols=173  Identities=31%  Similarity=0.583  Sum_probs=143.7

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||.++++++++++.++|+|+||+|||.  +|++.+.++.+   +||+||+++.|..+.. ......+..+.|+
T Consensus        34 ~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~---~iW~P~l~~~n~~~~~-~~~~~~~~~~~v~  109 (217)
T PF02931_consen   34 LNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSS---QIWTPDLYFYNSVSGS-FEITEPNSNVRVY  109 (217)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEEGG---GS----EEETTBSSSE-EECS-SSEEEEEE
T ss_pred             HhheeccccccchhhhhhhhceeccccccccChhhccCccccccccc---ceEecccccccccccc-eeccccccccccc
Confidence            5678899999999999999999999999999984  69999999998   9999999999955443 3333356679999


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCC------CceeecCccccCceEEeeeEE
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGP------NSVGVSNEVSLPQFKVLGHRQ  153 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~------~~~~~~~~~~~~~w~l~~~~~  153 (439)
                      +||+|.+..+++.++.|+||+++||||+|+|.+.|+||+|+.+++.+.|....      .....+.....++|++.+...
T Consensus       110 ~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~  189 (217)
T PF02931_consen  110 SDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWENKNPPIDENDEVSLSDFVSNSEWKIVSVTS  189 (217)
T ss_dssp             TTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSSSTTTEEEEESCSSS-TTSSTTTSCTTCETTSSEEEEEEEE
T ss_pred             ccchheeeecccccccccccccccccccceeEEEEecccccccceeeeecccCceeeeeccccHHHccccceEEEEeeEE
Confidence            99999999999999999999999999999999999999999999999998743      345556677899999999776


Q ss_pred             eeeEe--ecCCCc-eeeEEEEEEEEeee
Q psy7487         154 KDLEI--SLTTGN-YSRLACEIQFVRSM  178 (439)
Q Consensus       154 ~~~~~--~~~~~~-~s~l~~~~~l~R~~  178 (439)
                      .....  .+..+. |+.+.++++++|+|
T Consensus       190 ~~~~~~~~~~~~~~ys~l~~~~~l~R~~  217 (217)
T PF02931_consen  190 TRRETTYGCYNEPTYSMLSFTFTLKRRP  217 (217)
T ss_dssp             EEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred             EEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence            55544  334555 99999999999986

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3643|consensus

Probab=99.98  E-value=1.7e-34  Score=275.90  Aligned_cols=123  Identities=59%  Similarity=0.992  Sum_probs=111.5

Q ss_pred             ccccccCCCeeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccc
Q psy7487         311 SSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPAR  390 (439)
Q Consensus       311 ~~~~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r  390 (439)
                      ...+.+||||...+.    ........+  -+|+|++|...|+++|.+|||++|+|+|++|+|++|||||||+.+|.|||
T Consensus       201 ~~e~i~LpqFti~~~----~~~s~~~~~--sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pAR  274 (459)
T KOG3643|consen  201 GDEKIELPQFTITEY----HVTSRLVSF--STGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPAR  274 (459)
T ss_pred             ceeeeeccceEEEEE----EEEEEEEEE--ccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhh
Confidence            467789999997643    222223223  38999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487         391 VALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL  439 (439)
Q Consensus       391 ~~l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~  439 (439)
                      +++|+||+|||+|+.++.+++||+|||+||||+|+++||+|||+||+|+
T Consensus       275 v~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEY  323 (459)
T KOG3643|consen  275 VALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEY  323 (459)
T ss_pred             eeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999996

>KOG3644|consensus

Probab=99.55  E-value=7.5e-18  Score=168.73  Aligned_cols=175  Identities=35%  Similarity=0.624  Sum_probs=137.1

Q ss_pred             EEEeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEee
Q psy7487          76 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKD  155 (439)
Q Consensus        76 v~i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~  155 (439)
                      +.+..-........-.-+-.|.+.+..|++++++|.+.-..+.    -+.+.     ..+.. ++..+.+++..+.....
T Consensus       164 i~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~~~----pv~~~-----~~i~L-Pdf~l~~~~~~~~~~~y  233 (457)
T KOG3644|consen  164 ISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKEWN----PVQVK-----KDIKL-PDFSLPSFSTEKCTGSY  233 (457)
T ss_pred             EEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecCCC----Ccccc-----cCccC-Cceeccceeeccccccc
Confidence            4444455555555555667899999999999999998655443    12221     11221 23444455444433322


Q ss_pred             eEeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhhhhhhhhh
Q psy7487         156 LEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSIDVYL  235 (439)
Q Consensus       156 ~~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~~~i~~~~  235 (439)
                      .     +|.|++++++++++|+.                                                         
T Consensus       234 ~-----~G~~scL~v~~~f~R~~---------------------------------------------------------  251 (457)
T KOG3644|consen  234 T-----TGVYSCLRVTFTFKRRY---------------------------------------------------------  251 (457)
T ss_pred             c-----CcceEEEEEEEEEEEee---------------------------------------------------------
Confidence            2     67899999999998874                                                         


Q ss_pred             hhHHHHHHHHHhhhhccceeeEEEEeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccc
Q psy7487         236 GTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNA  315 (439)
Q Consensus       236 ~~~~~~v~~slle~~~~l~~~~~~~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~  315 (439)
                                                  |||++++|+|+.++|++||+||||+++|+|||+.||+|++||++++..+.+.
T Consensus       252 ----------------------------g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~~~i~~  303 (457)
T KOG3644|consen  252 ----------------------------GYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLLTLTTQSGGIRR  303 (457)
T ss_pred             ----------------------------hhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHHHHHHHhcchhh
Confidence                                        5568999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeEeeeeeEEEeeeeEEeeeecccc--cccchh
Q psy7487         316 ALPKVSYIKSIDVYLGTCFVMVFACLLGN--YSRLAC  350 (439)
Q Consensus       316 ~LP~~~y~~~~d~~~~~c~~~~~~~l~~~--~s~l~~  350 (439)
                      .||++||+|++|+|+++|+.|+|++++|+  ++++..
T Consensus       304 ~LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~  340 (457)
T KOG3644|consen  304 NLPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGR  340 (457)
T ss_pred             cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998  666654

>KOG3642|consensus

Probab=99.55  E-value=3.4e-16  Score=151.66  Aligned_cols=90  Identities=54%  Similarity=0.973  Sum_probs=84.4

Q ss_pred             EeecceeEEEEeeceEEEEEeeeeeeeccccccceeeecceeeEEEEEEeeccccccCCCeeEeeeeeEEEeeeeEEeee
Q psy7487         260 VRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFA  339 (439)
Q Consensus       260 ~~~~~~~l~~~~~~~~~~v~~s~~~f~l~~~~~~~r~~l~~~~~lt~~~~~~~~~~~LP~~~y~~~~d~~~~~c~~~~~~  339 (439)
                      .|++|||++|.|+|+++.|++||+|||++++++|+|+++|+|++|||+++....+.++||++|.+++|++...|++|+|+
T Consensus       247 ~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFs  326 (466)
T KOG3642|consen  247 SRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFA  326 (466)
T ss_pred             cceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeeeeeeeeeehhccCCCccccchhHHHHHHHHHHHHHH
Confidence            33468889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccc--cccch
Q psy7487         340 CLLGN--YSRLA  349 (439)
Q Consensus       340 ~l~~~--~s~l~  349 (439)
                      +++|+  +|+..
T Consensus       327 aliEfa~vNYft  338 (466)
T KOG3642|consen  327 ALVEFAVVNYFT  338 (466)
T ss_pred             HHHHHHheeeee
Confidence            99988  55554

>TIGR00860 LIC Cation transporter family protein

Probab=99.50  E-value=1.7e-16  Score=161.96  Aligned_cols=98  Identities=53%  Similarity=0.894  Sum_probs=94.5

Q ss_pred             cccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcccce
Q psy7487         341 LLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS  420 (439)
Q Consensus       341 l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~ka  420 (439)
                      -.|.|+++...+.++|+.+||.++.++|+.+++++||++||+++++.++|+++|+|++|+++++...++..+|+.||+++
T Consensus       223 ~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpl  302 (459)
T TIGR00860       223 NTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKA  302 (459)
T ss_pred             CCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeehhhhhhhhhhhcc
Q psy7487         421 IDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       421 iD~~~~~c~~~vf~~l~~  438 (439)
                      ||+|+++|++|+|++++|
T Consensus       303 i~~y~~~~~~~v~~sli~  320 (459)
T TIGR00860       303 IDVYFAVCMAFVFLALLE  320 (459)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999987

selective while glycine receptors are anion selective).

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.39  E-value=4.9e-17  Score=149.09  Aligned_cols=75  Identities=41%  Similarity=0.778  Sum_probs=72.2

Q ss_pred             eeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487         365 IYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL  439 (439)
Q Consensus       365 ~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~  439 (439)
                      .|+||.+++++||++||+++++.|+|+++|+|++|+++++...++..||++||.|++|+|+.+|++|+|++++|+
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~   75 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEF   75 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHh
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999873

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=98.87  E-value=1.3e-10  Score=106.30  Aligned_cols=65  Identities=40%  Similarity=0.748  Sum_probs=52.6

Q ss_pred             eehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhhh----------hhhhhhhhhHHHHHHHHHhhh
Q psy7487         185 IYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS----------FSIDVYLGTCFVMVFASLLGN  249 (439)
Q Consensus       185 i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~~----------~~i~~~~~~~~~~v~~slle~  249 (439)
                      +++||+++++++|++||+|+++++||+++|+|++|+|++++.++          ..++.|+..|+++++++++|.
T Consensus         1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~   75 (237)
T PF02932_consen    1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEF   75 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHh
Confidence            47999999999999999999997799999999999999988862          234456666666666665554

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>KOG3645|consensus

Probab=96.80  E-value=1.7e-05  Score=81.10  Aligned_cols=95  Identities=31%  Similarity=0.501  Sum_probs=85.5

Q ss_pred             cccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-ccee
Q psy7487         343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSI  421 (439)
Q Consensus       343 ~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~kai  421 (439)
                      +.|+-+...+.++|+..||....++||.++..++=++|+++.+....|+++|++.+|+++....-+...+|+-|- +--|
T Consensus       224 ~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLi  303 (449)
T KOG3645|consen  224 GPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLI  303 (449)
T ss_pred             CceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHH
Confidence            347778888999999999999999999999999999999997777789999999999999998889999999998 7888


Q ss_pred             eeeehhhhhhhhhhhc
Q psy7487         422 DVYLGTCFVMVFASLL  437 (439)
Q Consensus       422 D~~~~~c~~~vf~~l~  437 (439)
                      =.|..+++.++.++.+
T Consensus       304 g~y~~~~m~~~~~sv~  319 (449)
T KOG3645|consen  304 GKYLLFTMVLVTISVV  319 (449)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8899999988887764

>KOG3646|consensus

Probab=85.02  E-value=0.0072  Score=59.92  Aligned_cols=84  Identities=23%  Similarity=0.440  Sum_probs=67.3

Q ss_pred             cccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcccce-eee
Q psy7487         345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKS-IDV  423 (439)
Q Consensus       345 ~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~ka-iD~  423 (439)
                      |.-+....+++||.-||-....+|+.|+-.++-.+|-+++++ ..++++++|.+|+......-++...|..|..-- +-+
T Consensus       222 Y~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~-gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~  300 (486)
T KOG3646|consen  222 YPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDA-GEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGA  300 (486)
T ss_pred             cceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccc-cceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHH
Confidence            444556677889999999999999999999999999999965 589999999999998888888888999885432 334


Q ss_pred             eehhhh
Q psy7487         424 YLGTCF  429 (439)
Q Consensus       424 ~~~~c~  429 (439)
                      |+.-|+
T Consensus       301 fFsc~m  306 (486)
T KOG3646|consen  301 FFSCCM  306 (486)
T ss_pred             HHHHHH
Confidence            444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	439
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		7e-44
3rhw_A	347	C. Elegans Glutamate-Gated Chloride Channel (Glucl)		3e-20
4a97_A	307	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		7e-10
4a97_A	307	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		8e-04
3uq4_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		7e-10
3uq4_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		8e-04
3rqu_A	322	Crystal Structure Of A Prokaryotic Pentameric Ligan		7e-10
3rqu_A	322	Crystal Structure Of A Prokaryotic Pentameric Ligan		9e-04
3uq5_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		7e-10
3uq5_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		7e-04
2yks_A	321	Pentameric Ligand Gated Ion Channel Elic Mutant F24		8e-10
2yks_A	321	Pentameric Ligand Gated Ion Channel Elic Mutant F24		6e-04
3uq7_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		8e-10
3uq7_A	324	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		7e-04
2vl0_A	321	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		9e-10
2vl0_A	321	X-Ray Structure Of A Pentameric Ligand Gated Ion Ch		8e-04
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		2e-09
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		3e-09
2bg9_C	369	Refined Structure Of The Nicotinic Acetylcholine Re		2e-07
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		9e-07
3tlt_A	321	The Glic Pentameric Ligand-Gated Ion Channel H11'f		1e-06
3ei0_A	317	Structure Of The E221a Mutant Of The Gloebacter Vio		1e-06
2xq9_A	317	Pentameric Ligand Gated Ion Channel Glic Mutant E22		1e-06
3ehz_A	317	X-Ray Structure Of The Pentameric Ligand Gated Ion		1e-06
3tls_A	321	The Glic Pentameric Ligand-Gated Ion Channel E19'p		1e-06
3eam_A	317	An Open-Pore Structure Of A Bacterial Pentameric Li		1e-06
4ilc_A	320	The Glic Pentameric Ligand-gated Ion Channel In Com		1e-06
4il9_A	320	The Pentameric Ligand-gated Ion Channel Glic A237f		1e-06
3p4w_A	318	Structure Of Desflurane Bound To A Pentameric Ligan		1e-06
3lsv_A	317	Structure Of The A237f Mutant Of The Pentameric Lig		1e-06
3uu3_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		3e-06
3tlw_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		3e-06
3tlu_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		3e-06
3tlv_A	321	The Glic Pentameric Ligand-Gated Ion Channel Loop2-		3e-06
2bg9_E	370	Refined Structure Of The Nicotinic Acetylcholine Re		4e-06
1vry_A	76	Second And Third Transmembrane Domains Of The Alpha		6e-06
4aq5_E	488	Gating Movement In Acetylcholine Receptor Analysed		2e-05

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score =  174 bits (442), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 95/261 (36%), Positives = 135/261 (51%), Gaps = 19/261 (7%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF----RQRPGVETLSVGSDFIKNIWVPDTF 57
           L ++ K+   + +++     R+ W D RL++      +P    L+VG      IW+PDTF
Sbjct: 36  LRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVG----HQIWMPDTF 91
Query: 58  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
           F NEKQ+Y H     N  IRIH+ G++  S+R+++  SCPM LQY+PMD Q C I++ S+
Sbjct: 92  FPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASY 151
Query: 118 GYTMRDIRYKWNE-GPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVR 176
            YT +DI Y W E  P  + V    SLP F++             TG YS L   IQ  R
Sbjct: 152 AYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKR 211
Query: 177 SMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARXXXXXXXXXXXXXXXXXSFS------ 230
              +YL+Q+YIPS ++V +SWVSFW +R A PAR                   S      
Sbjct: 212 EFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS 271
Query: 231 ----IDVYLGTCFVMVFASLL 247
               IDV++G C   +F +LL
Sbjct: 272 YIKAIDVWIGACMTFIFCALL 292

>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In Complex With Fab And Ivermectin Length = 347

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 59/95 (62%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
           G YS L   IQ  R   +YL+Q+YIPS ++VI+SWVSFW +R A PARV LG        
Sbjct: 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMT 257
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
                 N+ LP +SY+K+IDV++G C   +F +LL
Sbjct: 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALL 292

>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) In Complex With Zopiclone Length = 307

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 20  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 74
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 75  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 132
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
             +    +  + NE  + ++ + G     +          +      +SR+   I  VR+
Sbjct: 133 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 190
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
             YYL    +P  LI+A SW  FWL
Sbjct: 191 PSYYLWSFILPLGLIIAASWSVFWL 215

>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) In Complex With Zopiclone Length = 307

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
             +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+           
Sbjct: 176 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 233
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
                 +  LP++ Y   ID  +   +  +FA++L
Sbjct: 234 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 268

>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l) Length = 324

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 32  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 86
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 87  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 144
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
             +    +  + NE  + ++ + G     +          +      +SR+   I  VR+
Sbjct: 145 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 202
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
             YYL    +P  LI+A SW  FWL
Sbjct: 203 PSYYLWSFILPLGLIIAASWSVFWL 227

>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l) Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXX 404
           +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+             
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAY 247
Query: 405 XXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
               +  LP++ Y   ID  +   +  +FA++L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280

>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated Ion Channel, Elic Length = 322

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 30  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 85  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
             +    +  + NE  + ++ + G     +          +      +SR+   I  VR+
Sbjct: 143 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 200
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
             YYL    +P  LI+A SW  FWL
Sbjct: 201 PSYYLWSFILPLGLIIAASWSVFWL 225

>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated Ion Channel, Elic Length = 322

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
             +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+           
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 243
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
                 +  LP++ Y   ID  +   +  +FA++L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278

>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a F16l) In The Presence Of 10 Mm Cysteamine Length = 324

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 32  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 86
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 87  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 144
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
             +    +  + NE  + ++ + G     +          +      +SR+   I  VR+
Sbjct: 145 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 202
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
             YYL    +P  LI+A SW  FWL
Sbjct: 203 PSYYLWSFILPLGLIIAASWSVFWL 227

>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a F16l) In The Presence Of 10 Mm Cysteamine Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXX 404
           +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+             
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMATVVAY 247
Query: 405 XXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
               +  LP++ Y   ID  +   +  +FA++L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280

>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a Length = 321

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 30  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 85  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 142
Query: 127 K----WNEGPNSVGV--------SNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQF 174
                + E  ++  +        S  +S  ++  L   Q +         +SR+   I  
Sbjct: 143 SDIQVYTENIDNEEIDEWWIRKASTHISDIRYDHLSSVQPN------QNEFSRITVRIDA 196
Query: 175 VRSMGYYLIQIYIPSSLIVAISWVSFWL 202
           VR+  YYL    +P  LI+A SW  FWL
Sbjct: 197 VRNPSYYLWSFILPLGLIIAASWSVFWL 224

>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
             +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+           
Sbjct: 185 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 242
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
                 +  LP++ Y   ID  +   +  +FA++L
Sbjct: 243 AYAAYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277

>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s F16l) In Presence Of 10 Mm Cysteamine Length = 324

Iteration: 1
 Score = 61.6 bits (148), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 88/205 (42%), Gaps = 23/205 (11%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 32  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 86
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 87  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 144
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRS 177
             +    +  + NE  + ++ + G     +          +      +SR+   I  VR+
Sbjct: 145 S-DIQVYTENIDNE-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRN 202
Query: 178 MGYYLIQIYIPSSLIVAISWVSFWL 202
             YYL    +P  LI+A SW  FWL
Sbjct: 203 PSYYLWSFILPLGLIIAASWSVFWL 227

>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s F16l) In Presence Of 10 Mm Cysteamine Length = 324

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 345 YSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXXXX 404
           +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+             
Sbjct: 190 FSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMSTVVAY 247
Query: 405 XXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
               +  LP++ Y   ID  +   +  +FA++L
Sbjct: 248 ALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280

>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Length = 321

Iteration: 1
 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 30/208 (14%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIK-----NIWVPDTFFVNEKQSYF 66
            + + +D Y    WT      R+ PG + L V +  I+      +WVP   F+N   S  
Sbjct: 30  EQTYKVDGYIVAQWTGKP---RKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
               T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+
Sbjct: 85  --PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRF 142
Query: 127 K----WNEGPNSVGV--------SNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQF 174
                + E  ++  +        S  +S  ++  L   Q +         +SR+   I  
Sbjct: 143 SDIQVYTENIDNEEIDEWWIRKASTHISDIRYDHLSSVQPN------QNEFSRITVRIDA 196
Query: 175 VRSMGYYLIQIYIPSSLIVAISWVSFWL 202
           VR+  YYL    +P  LI+A SW  FWL
Sbjct: 197 VRNPSYYLWSFILPLGLIIAASWSVFWL 224

>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel From Erwinia Chrysanthemi (Elic) Length = 321

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGXXXXXXXX 402
             +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+           
Sbjct: 185 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 242
Query: 403 XXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
                 +  LP++ Y   ID  +   +  +FA++L
Sbjct: 243 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
           L S+L L  ++E+ T   +    WTD RL +      G++ LS+ SD   ++W PD   +
Sbjct: 37  LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLM 93
Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F I    N  + + H+G+++        +SC + + YFP D Q C +  +S+ Y
Sbjct: 94  NNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 151
Query: 120 TMRDI 124
              ++
Sbjct: 152 DTSEV 156

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
           L S+L L  ++E+ T   +    WTD RL +      G++ LS+ SD   ++W PD   +
Sbjct: 61  LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLM 117
Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F I    N  + + H+G+++        +SC + + YFP D Q C +  +S+ Y
Sbjct: 118 NNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTY 175
Query: 120 TMRDI 124
              ++
Sbjct: 176 DTSEV 180

>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 17/207 (8%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
           L +++ LK   E  T + +    W D RL +   +   +  L +  + I   W+PD    
Sbjct: 39  LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELI---WIPDIVLQ 95
Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     +++A   N  +R   +G +T        +SCP+N+ YFP D Q C ++  +  Y
Sbjct: 96  NNNDGQYNVAYFCNVLVR--PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 153
Query: 120 TMRDIRYKWNEGPNSVGVSNE---VSLPQFK-VLGHRQKDLEISLTTGNYSRLACEIQFV 175
              +I       P +   + E   +  P  K + G +  +        NY  +   +   
Sbjct: 154 NANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPN------GTNYQDVTFYLIIR 207
Query: 176 RSMGYYLIQIYIPSSLIVAISWVSFWL 202
           R   +Y+I    P  LI  ++ ++F+L
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYL 234

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 7/125 (5%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
           L +++ LK   E  T + +    W D RL +   +   +  L +  + I   W+PD    
Sbjct: 60  LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELI---WIPDIVLQ 116
Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     +++A   N  +R   +G +T        +SCP+N+ YFP D Q C ++  +  Y
Sbjct: 117 NNNDGQYNVAYFCNVLVR--PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 174
Query: 120 TMRDI 124
              +I
Sbjct: 175 NANEI 179

>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 34  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 89  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221

>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus Pentameric Ligand Gated Ion Channnel (Glic) Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 30  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 85  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217

>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In Complex With Tetraethylarsonium (Teas) Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 30  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 85  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217

>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel Of Gloebacter Violaceus (Glic) In A Presumptive Open Conformation Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 30  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 85  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217

>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 34  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 89  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221

>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand- Gated Ion Channel Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 30  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 85  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217

>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex With Sulfates Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 34  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 89  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221

>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In Complex With Bromide Length = 320

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 34  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 88
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 89  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 146
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 147 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 204
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 205 IILPMLFILFISWTAFW 221

>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated Ion Channel, Glic Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 30  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 85  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217

>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand Gated Channel From Gloeobacter Violaceus Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 12/197 (6%)
Query: 8   LKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYF 66
           L  ++E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +  
Sbjct: 30  LDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA-- 84
Query: 67  HIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRY 126
             A   +  I +   G++    R +     P++ + +P D Q  HI +       R+I  
Sbjct: 85  RDADVVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVL 142
Query: 127 KWNEGPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQ 184
             +     VG +++V L  + +       K    +L     S+L  +++  R    Y+  
Sbjct: 143 AVDL--EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPN 200
Query: 185 IYIPSSLIVAISWVSFW 201
           I +P   I+ ISW +FW
Sbjct: 201 IILPMLFILFISWTAFW 217

>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
           +E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +    A 
Sbjct: 38  AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71  TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
             +  I +   G++    R +     P++ + +P D Q  HI +       R+I    + 
Sbjct: 93  VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
               VG +++V L  + +       K    +L     S+L  +++  R    Y+  I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
              I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221

>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21' Oxidized Mutant In A Locally-Closed Conformation (Lc2 Subtype) Length = 321

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
           +E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +    A 
Sbjct: 38  AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71  TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
             +  I +   G++    R +     P++ + +P D Q  HI +       R+I    + 
Sbjct: 93  VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
               VG +++V L  + +       K    +L     S+L  +++  R    Y+  I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
              I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221

>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24' Oxidized Mutant In A Locally-Closed Conformation (Lc1 Subtype) Length = 321

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
           +E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +    A 
Sbjct: 38  AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71  TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
             +  I +   G++    R +     P++ + +P D Q  HI +       R+I    + 
Sbjct: 93  VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
               VG +++V L  + +       K    +L     S+L  +++  R    Y+  I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
              I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221

>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22' Oxidized Mutant In A Locally-Closed Conformation (Lc3 Subtype) Length = 321

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 12  SEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
           +E F ++ +    W D RLAF   R GV   +   +    IW+P+  FVN + +    A 
Sbjct: 38  AETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENA--RDAD 92
Query: 71  TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
             +  I +   G++    R +     P++ + +P D Q  HI +       R+I    + 
Sbjct: 93  VVD--ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150
Query: 131 GPNSVGVSNEVSLPQFKVLGHRQ--KDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIP 188
               VG +++V L  + +       K    +L     S+L  +++  R    Y+  I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208
Query: 189 SSLIVAISWVSFW 201
              I+ ISW +FW
Sbjct: 209 MLFILFISWTAFW 221

>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
           L +++ L  + E  T + +    W D RL++   +  G++ + + S+ +   W+PD    
Sbjct: 36  LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELL---WLPDVVLE 92
Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F +A  +N  + +++ GS+         ++CP+ + YFP D Q C +   S  Y
Sbjct: 93  NNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTY 150
Query: 120 TMRDIRYK 127
              ++  +
Sbjct: 151 NAHEVNLQ 158

>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1 Subunit Of Human Glycine Receptor Length = 76

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 388 PARVALGXXXXXXXXXXXXXXNAALPKISYVKSIDVYLGTCFVMVFASLL 437
           PARV LG               A+LPK+SYVK+ID++L  C + VF++LL
Sbjct: 2   PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51

>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFV 59
           L +++ L  + E  T + +    W D RL++   +  G++ + + S+ +   W+PD    
Sbjct: 36  LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELL---WLPDVVLE 92
Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F +A  +N  + +++ GS+         ++CP+ + YFP D Q C +   S  Y
Sbjct: 93  NNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTY 150
Query: 120 TMRDIRYK 127
              ++  +
Sbjct: 151 NAHEVNLQ 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	439
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	3e-97
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	8e-39
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	8e-36
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	5e-92
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	1e-43
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	3e-41
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	1e-91
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	3e-41
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	8e-38
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	4e-64
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	3e-22
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	7e-06
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	5e-05
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	4e-22
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	6e-07
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	1e-05
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	8e-22
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	2e-05
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	1e-04
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	1e-21
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	2e-05
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	2e-04
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	3e-21
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	3e-06
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	4e-05
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	1e-19
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	2e-04
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	5e-19
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	2e-04
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	8e-04
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	2e-17
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	7e-04
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	2e-17
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	6e-16
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	6e-09
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	2e-15
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	3e-13
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	1e-12
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	3e-11
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	8e-10
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	1e-09
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	3e-08
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	2e-06
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	5e-04
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	7e-06
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	2e-04
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	8e-06
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	4e-04
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	1e-05
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	2e-05
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	2e-04
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	1e-04
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	1e-04
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	2e-04

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  294 bits (755), Expect = 3e-97
 Identities = 100/248 (40%), Positives = 138/248 (55%), Gaps = 11/248 (4%)

Query: 11  RSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
            + +++     R+ W D RL++  +   +   V       IW+PDTFF NEKQ+Y H   
Sbjct: 45  VNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTID 104

Query: 71  TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
             N  IRIH+ G++  S+R+++  SCPM LQY+PMD Q C I++ S+ YT +DI Y W E
Sbjct: 105 KPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE 164

Query: 131 G-PNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPS 189
             P  + V    SLP F++             TG YS L   IQ  R   +YL+Q+YIPS
Sbjct: 165 HSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPS 224

Query: 190 SLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS----------IDVYLGTCF 239
            ++V +SWVSFW +R A PARV LGVTT+LTMT       S          IDV++G C 
Sbjct: 225 CMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACM 284

Query: 240 VMVFASLL 247
             +F +LL
Sbjct: 285 TFIFCALL 292

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  142 bits (359), Expect = 8e-39
 Identities = 51/98 (52%), Positives = 68/98 (69%)

Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
              G YS L   IQ  R   +YL+Q+YIPS ++VI+SWVSFW +R A PARV LGVTT+L
Sbjct: 195 TNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLL 254

Query: 400 TMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
           TMT   +  N+ LP +SY+K+IDV++G C   +F +LL
Sbjct: 255 TMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALL 292

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score =  134 bits (338), Expect = 8e-36
 Identities = 57/141 (40%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
           G YS L   IQ  R   +YL+Q+Y+PS ++V +SWVSFW +R A  ARV LGVTT+LTMT
Sbjct: 198 GIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMT 257

Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL-----GNYSRLACEIQFVRSMGYYL 362
              +  N+ LP VSYIK+IDV++G C   +F  LL      + +          S    L
Sbjct: 258 AQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDL 317

Query: 363 IQIYIPSGLIV---IISWVSF 380
           I   +   L     I+ W  F
Sbjct: 318 ISRALFPVLFFVFNILYWSRF 338

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  280 bits (718), Expect = 5e-92
 Identities = 54/258 (20%), Positives = 98/258 (37%), Gaps = 29/258 (11%)

Query: 11  RSEDFTLDFYFRQFWTDPRLAFR--QRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHI 68
             + + +D Y    WT         +   VE   +       +WVP   F+N        
Sbjct: 29  LEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVV----GS 84

Query: 69  ATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKW 128
             T N+ + +   G +  + R   + S  M+ + FP DRQ   +E+E F Y  + +R+  
Sbjct: 85  PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSD 144

Query: 129 NEGPNSVGVSNEVSLPQFKVLGHRQKDLE---------ISLTTGNYSRLACEIQFVRSMG 179
            +        +   + ++ + G     +          +      +SR+   I  VR+  
Sbjct: 145 IQVY--TENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPS 202

Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
           YYL    +P  LI+A SW  FWL   +   R+    T +LT+      + +         
Sbjct: 203 YYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTT 260

Query: 231 -IDVYLGTCFVMVFASLL 247
            ID  +   +  +FA++L
Sbjct: 261 VIDQMIIAGYGSIFAAIL 278

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  154 bits (391), Expect = 1e-43
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMT 402
             +SR+   I  VR+  YYL    +P GLI+  SW  FWL   +   R+    T +LT+ 
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVV 243

Query: 403 TLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
                T+  LP++ Y   ID  +   +  +FA++L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score =  148 bits (375), Expect = 3e-41
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
             +SR+   I  VR+  YYL    +P  LI+A SW  FWL   +   R+    T +LT+ 
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVV 243

Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
                T+  LP++ Y   ID  +   +  +FA +L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  279 bits (715), Expect = 1e-91
 Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 22/249 (8%)

Query: 11  RSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIAT 70
            +E F ++ +    W D RLAF   P    + V +   + IW+P+  FVN + +      
Sbjct: 37  CAETFKVNAFLSLSWKDRRLAFD--PVRSGVRVKTYEPEAIWIPEIRFVNVENARDADVV 94

Query: 71  TSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNE 130
                I +   G++    R +     P++ + +P D Q  HI +       R+I    + 
Sbjct: 95  ----DISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL 150

Query: 131 GPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN--YSRLACEIQFVRSMGYYLIQIYIP 188
               VG +++V L  + +          +    +   S+L  +++  R    Y+  I +P
Sbjct: 151 --EKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILP 208

Query: 189 SSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS----------IDVYLGTC 238
              I+ ISW +FW    +  A V L V+T++      +L  +              +   
Sbjct: 209 MLFILFISWTAFWS--TSYEANVTLVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMI 266

Query: 239 FVMVFASLL 247
           ++  F +++
Sbjct: 267 YLFYFVAVI 275

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  148 bits (375), Expect = 3e-41
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 2/103 (1%)

Query: 335 VMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALG 394
              FA      S+L  +++  R    Y+  I +P   I+ ISW +FW    +  A V L 
Sbjct: 175 PANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWST--SYEANVTLV 232

Query: 395 VTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
           V+T++            LPK  Y+      +   ++  F +++
Sbjct: 233 VSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVI 275

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  138 bits (351), Expect = 8e-38
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 248 GNYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMT 307
              S+L  +++  R    Y+  I +P + I+ ISW +FW    +  A V L V+T++   
Sbjct: 183 RLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFWST--SYEANVTLVVSTLIAHI 240

Query: 308 TLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
                    LPK  Y+      +   ++  F  ++
Sbjct: 241 AFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVI 275

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score =  204 bits (520), Expect = 4e-64
 Identities = 36/185 (19%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
           L     L  ++E F ++ +    W D RLAF   P    + V +   + IW+P+  FVN 
Sbjct: 24  LIECYSLDDKAETFKVNAFLSLSWKDRRLAFD--PVRSGVRVKTYEPEAIWIPEIRFVNV 81

Query: 62  KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
           + +           I +   G++    R +     P++ +    D Q  HI +       
Sbjct: 82  ENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDT 137

Query: 122 RDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN--YSRLACEIQFVRSMG 179
           R+I    +     VG +++V L  + +          +    +   S+L  +++  R  G
Sbjct: 138 RNIVLAVDLEK--VGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQGG 195

Query: 180 YYLIQ 184
           ++   
Sbjct: 196 HHHHH 200

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 96.5 bits (240), Expect = 3e-22
 Identities = 43/262 (16%), Positives = 102/262 (38%), Gaps = 24/262 (9%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
           L  ++ +   ++    +   RQ W D RL +      G++ + + SD   ++W+PD    
Sbjct: 37  LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLY 93

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F I   +   + + ++G I  +      + C + + +FP D+Q C +++  + Y
Sbjct: 94  NNADGDFAIVHMTK--LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 151

Query: 120 TMRDIRYKWNEGPNSVGV---SNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVR 176
               +          +     S E  +  ++   H             Y  +       R
Sbjct: 152 DGTKVSISPESDRPDLSTFMESGEWVMKDYRGWKHWVYYT--CCPDTPYLDITYHFIMQR 209

Query: 177 SMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS------ 230
              Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L++T   ++         
Sbjct: 210 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTS 268

Query: 231 -----IDVYLGTCFVMVFASLL 247
                I  Y+    + V +S++
Sbjct: 269 SAVPLIGKYMLFTMIFVISSII 290

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 19/99 (19%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
           C    Y  +       R   Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L
Sbjct: 193 CPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLL 251

Query: 400 TMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437
           ++T  +      +P  S  V  I  Y+    + V +S++
Sbjct: 252 SLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 290

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 15/94 (15%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTL 309
           Y  +       R   Y+++ + +P +L   ++ + F+L    +  ++ L ++ +L++T  
Sbjct: 198 YLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYL-PTDSGEKMTLSISVLLSLTVF 256

Query: 310 MSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
           +      +P  S  +  I  Y+    + V + ++
Sbjct: 257 LLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII 290

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 96.5 bits (240), Expect = 4e-22
 Identities = 45/264 (17%), Positives = 99/264 (37%), Gaps = 26/264 (9%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
           L +++ L  + E  T + +    W D RL          G++ + + S+    +W+PD  
Sbjct: 36  LTNLISLNEKEEALTTNVWIEIQWNDYRL--SWNTSEYEGIDLVRIPSE---LLWLPDVV 90

Query: 58  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
             N     F +A  +N  + +++ GS+         ++CP+ + YFP D Q C +   S 
Sbjct: 91  LENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQ 148

Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLG---HRQKDLEISLTTGNYSRLACEIQF 174
            Y   ++          +   +     ++ +      +  + +++    ++  +   +  
Sbjct: 149 TYNAHEVNL-QLSAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLII 207

Query: 175 VRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS---- 230
            R   +Y+I I  P  LI ++  + ++L   A   +  L ++ +L  T    L       
Sbjct: 208 QRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPE 267

Query: 231 -------IDVYLGTCFVMVFASLL 247
                  I  YL     +    + 
Sbjct: 268 TSLNVPLIGKYLIFVMFVSLVIVT 291

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 1/99 (1%)

Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
               ++  +   +   R   +Y+I I  P  LI  +  + ++L   A   +  L ++ +L
Sbjct: 193 KDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 252

Query: 400 TMTTLMSSTNAALPKISYVKS-IDVYLGTCFVMVFASLL 437
             T  +      +P+ S     I  YL     +    + 
Sbjct: 253 AQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVT 291

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 38/94 (40%), Gaps = 1/94 (1%)

Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTL 309
           +  +   +   R   +Y+I I  P +LI ++  + ++L   A   +  L ++ +L  T  
Sbjct: 198 FQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIF 257

Query: 310 MSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
           +      +P+ S  +  I  YL     +    + 
Sbjct: 258 LFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVT 291

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 95.3 bits (237), Expect = 8e-22
 Identities = 50/259 (19%), Positives = 99/259 (38%), Gaps = 21/259 (8%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
           L +++ LK   E  T + +    W D RL +       +  L +  +    IW+PD    
Sbjct: 39  LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQ 95

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     +++A   N  + +  +G +T        +SCP+N+ YFP D Q C ++  +  Y
Sbjct: 96  NNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 153

Query: 120 TMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRSMG 179
              +I       P +   + E  +       +   D   + T   Y  +   +   R   
Sbjct: 154 NANEISMDLIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTN--YQDVTFYLIIRRKPL 211

Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
           +Y+I    P  LI  ++ ++F+L    +  +++  +  +L      +L+           
Sbjct: 212 FYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPETALAV 270

Query: 231 --IDVYLGTCFVMVFASLL 247
             I  YL     +V   ++
Sbjct: 271 PLIGKYLMFIMSLVTGVVV 289

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 356 RSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKI 415
           R   +Y+I    P  LI  ++ ++F+L    +  +++  +  +L     +  T+  LP+ 
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPET 266

Query: 416 SYVKS-IDVYLGTCFVMVFASLL 437
           +     I  YL     +V   ++
Sbjct: 267 ALAVPLIGKYLMFIMSLVTGVVV 289

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 261 RSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKV 320
           R   +Y+I    P +LI  ++ ++F+L    +  +++  +  +L     +  T+  LP+ 
Sbjct: 208 RKPLFYVINFITPCVLISFLAALAFYL-PAESGEKMSTAICVLLAQAVFLLLTSQRLPET 266

Query: 321 S-YIKSIDVYLGTCFVMVFACLL 342
           +  +  I  YL     +V   ++
Sbjct: 267 ALAVPLIGKYLMFIMSLVTGVVV 289

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 96.0 bits (238), Expect = 1e-21
 Identities = 47/270 (17%), Positives = 99/270 (36%), Gaps = 31/270 (11%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
           L +++ L  + E  T + +    W D RL          G++ + + S+    +W+PD  
Sbjct: 36  LTNLISLNEKEEALTTNVWIEIQWNDYRL--SWNTSEYEGIDLVRIPSE---LLWLPDVV 90

Query: 58  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
             N     F +A  +N  + +++ GS+         ++CP+ + YFP D Q C +   S 
Sbjct: 91  LENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQ 148

Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQF---------KVLGHRQKDLEISLTTGNYSRL 168
            Y   ++  + +     V     +    F              +  + +++    ++  +
Sbjct: 149 TYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEI 208

Query: 169 ACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS 228
              +   R   +Y+I I  P  LI ++  + ++L   A   +  L ++ +L  T    L 
Sbjct: 209 IFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLI 268

Query: 229 FS-----------IDVYLGTCFVMVFASLL 247
                        I  YL     +    + 
Sbjct: 269 AQKVPETSLNVPLIGKYLIFVMFVSLVIVT 298

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y+I I  P  LI  +  + ++L   A   +  L ++ +L  T  +      +P+ S  V
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 279

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL     +    + 
Sbjct: 280 PLIGKYLIFVMFVSLVIVT 298

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           +Y+I I  P +LI ++  + ++L   A   +  L ++ +L  T  +      +P+ S  +
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 279

Query: 324 KSIDVYLGTCFVMVFACLL 342
             I  YL     +    + 
Sbjct: 280 PLIGKYLIFVMFVSLVIVT 298

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 93.8 bits (233), Expect = 3e-21
 Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 25/261 (9%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
           L S+L L  ++E+ T   +    WTD RL  +  P    G++ LS+ SD   ++W PD  
Sbjct: 37  LTSLLILNEKNEEMTTSVFLNLAWTDYRL--QWDPAAYEGIKDLSIPSD---DVWQPDIV 91

Query: 58  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
            +N     F I    N  + + H+G+++        +SC + + YFP D Q C +  +S+
Sbjct: 92  LMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSY 149

Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFVRS 177
            Y   ++  + +     +         Q+ +     +         +Y  +   +   R 
Sbjct: 150 TYDTSEVILQ-HALDAMINQDAFTENGQWSIEHKPSR-KNWRSDDPSYEDVTFYLIIQRK 207

Query: 178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS------- 230
             +Y++   +P  LI  ++ + F+L  +    +++L ++ +L +T   +L          
Sbjct: 208 PLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSL 266

Query: 231 ----IDVYLGTCFVMVFASLL 247
               I  YL    ++V  S++
Sbjct: 267 SVPIIISYLMFIMILVAFSVI 287

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 2/99 (2%)

Query: 340 CLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVL 399
               +Y  +   +   R   +Y++   +P  LI I++ + F+L  +    +++L ++ +L
Sbjct: 190 SDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALL 248

Query: 400 TMTTLMSSTNAALPKISYVKS-IDVYLGTCFVMVFASLL 437
            +T  +      +P+ S     I  YL    ++V  S++
Sbjct: 249 ALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVI 287

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 19/95 (20%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 249 NYSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTT 308
           +Y  +   +   R   +Y++   VP ILI  ++ + F+L       +++L ++ +L +T 
Sbjct: 194 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLP-PDAGEKMSLSISALLALTV 252

Query: 309 LMSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
            +      +P+ S  +  I  YL    ++V   ++
Sbjct: 253 FLLLLADKVPETSLSVPIIISYLMFIMILVAFSVI 287

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 90.2 bits (223), Expect = 1e-19
 Identities = 59/268 (22%), Positives = 114/268 (42%), Gaps = 30/268 (11%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRP----GVETLSVGSDFIKNIWVPDTF 57
           L S+L L  ++E+ T   +    WTD RL  +  P    G++ LS+ SD   ++W PD  
Sbjct: 61  LTSLLILNEKNEEMTTSVFLNLAWTDYRL--QWDPAAYEGIKDLSIPSD---DVWQPDIV 115

Query: 58  FVNEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESF 117
            +N     F I    N  + + H+G+++        +SC + + YFP D Q C +  +S+
Sbjct: 116 LMNNNDGSFEITLHVN--VLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSY 173

Query: 118 GYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFV-- 175
            Y   ++  +            E+ + Q     + Q  +E   +  N+       + V  
Sbjct: 174 TYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSDDPSYEDVTF 233

Query: 176 -----RSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS 230
                R   +Y++   +P  LI  ++ + F+L  +A   +++L ++ +L +T   +L   
Sbjct: 234 YLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLAD 292

Query: 231 -----------IDVYLGTCFVMVFASLL 247
                      I  YL    ++V  S++
Sbjct: 293 KVPETSLSVPIIISYLMFIMILVAFSVI 320

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/79 (24%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y++   +P  LI I++ + F+L  +A   +++L ++ +L +T  +      +P+ S  V
Sbjct: 243 FYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSV 301

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL    ++V  S++
Sbjct: 302 PIIISYLMFIMILVAFSVI 320

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 88.1 bits (218), Expect = 5e-19
 Identities = 45/262 (17%), Positives = 108/262 (41%), Gaps = 24/262 (9%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
           L  ++ +   ++    +   RQ W D RL +      G++ + + SD   ++W+PD    
Sbjct: 61  LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLY 117

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F I   +   + + ++G I  +      + C + + +FP D+Q C +++  + Y
Sbjct: 118 NNADGDFAIVHMTK--LLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY 175

Query: 120 TMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGN---YSRLACEIQFVR 176
               +        +   +S  +   ++ +  +R     +  T      Y  +       R
Sbjct: 176 DGTKVSISPES--DRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQR 233

Query: 177 SMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL------SFS 230
              Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L++T   ++      S S
Sbjct: 234 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTS 292

Query: 231 IDV-----YLGTCFVMVFASLL 247
             V     Y+    + V +S++
Sbjct: 293 SAVPLIGKYMLFTMIFVISSII 314

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L++T  +      +P  S  V
Sbjct: 237 YFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 295

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  Y+    + V +S++
Sbjct: 296 PLIGKYMLFTMIFVISSII 314

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 13/79 (16%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           Y+++ + +P +L   ++ + F+L    +  ++ L ++ +L++T  +      +P  S  +
Sbjct: 237 YFVVNVIIPCLLFSFLTVLVFYL-PTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 295

Query: 324 KSIDVYLGTCFVMVFACLL 342
             I  Y+    + V + ++
Sbjct: 296 PLIGKYMLFTMIFVISSII 314

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 83.7 bits (206), Expect = 2e-17
 Identities = 48/272 (17%), Positives = 99/272 (36%), Gaps = 32/272 (11%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
           L +++ LK   E  T + +    W D RL +       +  L +  +    IW+PD    
Sbjct: 60  LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQ 116

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     +++A   N  + +  +G +T        +SCP+N+ YFP D Q C ++  +  Y
Sbjct: 117 NNNDGQYNVAYFCN--VLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNY 174

Query: 120 TMRDIRYKWN----EGPNSVGVSNEVSLPQFKVLGHRQKDLEISLTTGNYSRLACEIQFV 175
              +I         +G +       +    F   G  +   + +       +      + 
Sbjct: 175 NANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQ 234

Query: 176 ---------RSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQV 226
                    R   +Y+I    P  LI  ++ ++F+L    +  +++  +  +L      +
Sbjct: 235 DVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLL 293

Query: 227 L--------SFS---IDVYLGTCFVMVFASLL 247
           L        + +   I  YL     +V   ++
Sbjct: 294 LTSQRLPETALAVPLIGKYLMFIMSLVTGVVV 325

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y+I    P  LI  ++ ++F+L    +  +++  +  +L     +  T+  LP+ +  V
Sbjct: 248 FYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAV 306

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL     +V   ++
Sbjct: 307 PLIGKYLMFIMSLVTGVVV 325

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76

 Score = 75.7 bits (186), Expect = 2e-17
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query: 388 PARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLL 437
           PARV LG+TTVLT+TT  S + A+LPK+SYVK+ID++L  C + VF++LL
Sbjct: 2   PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76

 Score = 71.4 bits (175), Expect = 6e-16
 Identities = 29/49 (59%), Positives = 39/49 (79%)

Query: 294 ARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLL 342
           ARV LG+TTVLT+TT  S + A+LPKVSY+K+ID++L  C + VF+ LL
Sbjct: 3   ARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 76

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 10/50 (20%)

Query: 208 PARVALGVTTVLTMTTLQVLS----------FSIDVYLGTCFVMVFASLL 247
           PARV LG+TTVLT+TT    S           +ID++L  C + VF++LL
Sbjct: 2   PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALL 51

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 26/128 (20%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFV 59
           L  ++ +   ++  T +   +Q W D  L +      GV+ + + S+    IW PD    
Sbjct: 38  LIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSE---KIWRPDVVLY 94

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N     F I   +   + + ++G IT +      + C + + +FP D Q C +++ +  Y
Sbjct: 95  NNADGDFAIVKFTK--VLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTY 152

Query: 120 TMRDIRYK 127
               +   
Sbjct: 153 DGSAVAIN 160

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 7/131 (5%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNE 61
             ++L++   + +  + F+ +  W+D  LA+      + +SV      ++WVPD    N 
Sbjct: 36  FINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPIS---SLWVPDLAAYNA 92

Query: 62  KQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTM 121
                 +        R+   G +     +    SC ++          C I+I S+ +  
Sbjct: 93  ISKPEVLTPQL---ARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHS 148

Query: 122 RDIRYKWNEGP 132
           R+I        
Sbjct: 149 REISVDPTTEN 159

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 9/132 (6%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
           L  ++ +  +++   + F+ +  WTD  L +   + PGV+ +SV      ++WVPD    
Sbjct: 35  LLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS---SLWVPDLAAY 91

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           N       +         ++ SG +     +    SC ++          C ++  S+ +
Sbjct: 92  NAISKPEVLTPQL---ALVNSSGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTH 147

Query: 120 TMRDIRYKWNEG 131
             R++  +  E 
Sbjct: 148 HSRELDLQMQEA 159

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAF--RQRPGVETLSVGSDFIKNIWVPDTFFV 59
           L+ ++K    + +  L +Y +Q W    L +   +   +      +    +IW PD    
Sbjct: 46  LQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAA---DIWTPDITAY 102

Query: 60  NEKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY 119
           +  +        S +   + H GS+       ++  C         +   C ++  S+ Y
Sbjct: 103 SSTRPVQ---VLSPQIAVVTHDGSVMFIPAQRLSFMCDPTG-VDSEEGATCAVKFGSWVY 158

Query: 120 TMRDIRYK 127
           +  +I  K
Sbjct: 159 SGFEIDLK 166

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 20/150 (13%), Positives = 48/150 (32%), Gaps = 14/150 (9%)

Query: 7   KLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQS 64
           +    +   T     +  W D  L +        + + +  D    IW PD    N    
Sbjct: 51  RGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPD---EIWTPDIKLFNSVDL 107

Query: 65  YFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 124
              +  T+     +  +G++       +   C         D   CH +  S+ Y++ ++
Sbjct: 108 DMTLDRTTQ--AIVFSNGTVLWIPPAVLKVLC-----VSQDDVDSCHFQFGSWVYSVDEV 160

Query: 125 RYKWNEGPNSVGVSNEVSLPQFKVLGHRQK 154
              + +  +   V  +      ++L +  +
Sbjct: 161 DIHFMD--DKAEVLLDFYQDSLEILENSAQ 188

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 18/131 (13%), Positives = 47/131 (35%), Gaps = 10/131 (7%)

Query: 2   LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR-PGVETLSVGSDFIKNIWVPDTFFVN 60
           L ++++     +   +  + +  W  P  +       ++ +S+       +W PD  F N
Sbjct: 33  LMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLPVS---KMWTPDLSFYN 89

Query: 61  EKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPM-NLQYFPMDRQLCHIEIESFGY 119
              +   ++      + +   GS+       +  +C + N+   P     C I++ S+ +
Sbjct: 90  AIAAPELLSADR---VVVSKDGSVIYVPSQRVRFTCDLINVDTEP--GATCRIKVGSWTH 144

Query: 120 TMRDIRYKWNE 130
             +       E
Sbjct: 145 DNKQFALITGE 155

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 28

 Score = 48.1 bits (114), Expect = 3e-08
 Identities = 19/28 (67%), Positives = 22/28 (78%)

Query: 387 TPARVALGVTTVLTMTTLMSSTNAALPK 414
            PARV LG+TTVLTMTT  S + A+LPK
Sbjct: 1   APARVGLGITTVLTMTTQSSGSRASLPK 28

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 28

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 294 ARVNLGVTTVLTMTTLMSSTNAALPK 319
           ARV LG+TTVLTMTT  S + A+LPK
Sbjct: 3   ARVGLGITTVLTMTTQSSGSRASLPK 28

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Length = 28

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 14/18 (77%), Positives = 15/18 (83%)

Query: 207 TPARVALGVTTVLTMTTL 224
            PARV LG+TTVLTMTT 
Sbjct: 1   APARVGLGITTVLTMTTQ 18

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           Y+++ +  P      ++ + F+L  ++   ++    + + ++T  +      +P  S  V
Sbjct: 51  YFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  Y+      V +S+ 
Sbjct: 110 PLIGKYMLFTKEFVESSIK 128

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           Y+++ +  P      ++ + F+L    +  ++    + + ++T  +      +P  S  +
Sbjct: 51  YFVVNVIEPCKKFSELTGLVFYLP-TDSGEKMTESKSVLKSLTEKLKKIVELIPSTSSAV 109

Query: 324 KSIDVYLGTCFVMVFACLL 342
             I  Y+      V + + 
Sbjct: 110 PLIGKYMLFTKEFVESSIK 128

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score = 44.8 bits (106), Expect = 8e-06
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 2/101 (1%)

Query: 338 FACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTT 397
              +      L  +    R   +Y I + IP  LI  ++ + F+L  +    ++ L ++ 
Sbjct: 8   STSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISV 66

Query: 398 VLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL 437
           +L +T  +   +  +P  S  V  +  YL    V+V  S++
Sbjct: 67  LLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV 107

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 250 YSRLACEIQFVRSMGYYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTL 309
              L  +    R   +Y I + +P +LI +++ + F+L       ++ L ++ +L +T  
Sbjct: 15  TENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLP-SDCGEKMTLCISVLLALTVF 73

Query: 310 MSSTNAALPKVS-YIKSIDVYLGTCFVMVFACLL 342
           +   +  +P  S  +  +  YL    V+V   ++
Sbjct: 74  LLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV 107

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y I + IP  LI  ++ + F+L       ++ L ++ +L++T  +      +P  S   
Sbjct: 9   FYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67

Query: 419 KSIDVYLGTCFVMVFASLL 437
            SI  YL    + V  S++
Sbjct: 68  PSIGEYLLFTMIFVTLSIV 86

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           +Y I + +P +LI  ++ + F+L       ++ L ++ +L++T  +      +P  S   
Sbjct: 9   FYTINLIIPCLLISCLTVLVFYLP-SECGEKITLCISVLLSLTVFLLLITEIIPSTSSVS 67

Query: 324 KSIDVYLGTCFVMVFACLL 342
            SI  YL    + V   ++
Sbjct: 68  PSIGEYLLFTMIFVTLSIV 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 47/321 (14%), Positives = 85/321 (26%), Gaps = 105/321 (32%)

Query: 4   SVLKLK-FRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEK 62
           + + L    S        F+ FW               L++ +        P+T     +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFW---------------LNLKNCNS-----PETVLEMLQ 203

Query: 63  QSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCH---I------- 112
           +  + I    N   R  HS +I   I           L+     +   +   +       
Sbjct: 204 KLLYQI--DPNWTSRSDHSSNIKLRIHSIQAE-----LRRLLKSKPYENCLLVLLNVQNA 256

Query: 113 -EIESFGY------TMRDI----------RYKWNEGPNSVGVSNEVSLPQF-KVLGHRQK 154
               +F        T R                +   +S+ ++ +       K L  R +
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 155 DLEISLTTGNYSRLACEIQ-FVRSMGYYLIQIYIPSSLIVAIS-WVSFWLNRNA------ 206
           DL          R          S+        I  S+   ++ W   W + N       
Sbjct: 317 DL---------PREVLTTNPRRLSI--------IAESIRDGLATW-DNWKHVNCDKLTTI 358

Query: 207 --------TPA--R---VALGV---TTVLTMTTLQVLSFSIDVYLGTCFVMVFASLLGNY 250
                    PA  R     L V   +  +    L ++ F +        VMV  + L  Y
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS----DVMVVVNKLHKY 414

Query: 251 SRLACEIQFVRSMGYYLIQIY 271
           S +  +    +     +  IY
Sbjct: 415 SLVEKQ---PKESTISIPSIY 432

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 45.3 bits (106), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y+I I  P  LI  +  + ++L   A   +  L ++ +L  T  +      +P+ S  V
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL     +    ++
Sbjct: 63  PLIGKYLIFVMFVSMLIVM 81

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           +Y+I I  P +LI ++  + ++L   A   +  L ++ +L  T  +      +P+ S  +
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 324 KSIDVYLGTCFVMVFACLL 342
             I  YL     +    ++
Sbjct: 63  PLIGKYLIFVMFVSMLIVM 81

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y++   IP  LI I++ + F+L  +A   +++L ++ +L +T  +      +P+ S  V
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL    ++V  S++
Sbjct: 62  PIIIRYLMFIMILVAFSVI 80

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 42.6 bits (99), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y+I    P  LI  ++ ++F+L   +   +++  ++ +L     +  T+  LP+ +  V
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL     +V   ++
Sbjct: 62  PLIGKYLMFIMSLVTGVIV 80

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L++T  +      +P  S  V
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  Y+    + V +S++
Sbjct: 62  PLIGKYMLFTMIFVISSII 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	439
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	100.0
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	100.0
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	100.0
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	100.0
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	100.0
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	100.0
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	100.0
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	100.0
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	100.0
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	100.0
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	100.0
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	100.0
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	100.0
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	100.0
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	100.0
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	100.0
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	100.0
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	100.0
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	100.0
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	100.0
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.71
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.69
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.67
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	99.67
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	99.67
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	99.63
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.6
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.58
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.58
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.58
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.57
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.56
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	99.51
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.51
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.46
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.44
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.42
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.34
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.25
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.22
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.2
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.18
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.1
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.1
1vry_A	76	Glycine receptor alpha-1 chain; second transmembra	99.06
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.05
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	98.78
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	97.08
1mot_A	28	Glycine receptor alpha-1 chain; second transmembra	96.31

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=100.00  E-value=2.9e-54  Score=425.13  Aligned_cols=246  Identities=40%  Similarity=0.760  Sum_probs=226.5

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEe-CCcccCCccccceEEeeccccceeeeeccceeEEE
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSV-GSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRI   78 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l-~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i   78 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  ++++.+.+ +++   +||+||+++.|++++.+|....+|..++|
T Consensus        36 l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~---~IW~PDi~l~N~~~~~~~~~~~~n~~v~i  112 (347)
T 3rhw_A           36 LRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGH---QIWMPDTFFPNEKQAYKHTIDKPNVLIRI  112 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTC---CCCCCCEECTTEEEEEECCSSSCSEEEEE
T ss_pred             EEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchh---ceecCCEeeeccccccccccccccEEEEE
Confidence            5789999999999999999999999999999984  67888876 555   99999999999999988888888888999


Q ss_pred             eecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecC--ccccCceEEeeeEEeee
Q psy7487          79 HHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSN--EVSLPQFKVLGHRQKDL  156 (439)
Q Consensus        79 ~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~--~~~~~~w~l~~~~~~~~  156 (439)
                      ++||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.++ .++..++  +..++||++.+.....+
T Consensus       113 ~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~-~~~~~~~~~~~~~~e~~l~~~~~~~~  191 (347)
T 3rhw_A          113 HNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEH-SPLQLKVGLSSSLPSFQLTNTSTTYC  191 (347)
T ss_dssp             ETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSS-CSEEECTTSGGGCCSEEEEEEEEEEC
T ss_pred             eCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCC-CceeecCcceeEccceEEeeEEeeEe
Confidence            99999999999999999999999999999999999999999999999999875 3455554  67789999999887777


Q ss_pred             EeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         157 EISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       157 ~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                      ...+++|+|+++.+++++||+++||++++++||+++++++|++||+|+++.|+|+++|+|++|+|++++..         
T Consensus       192 ~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S  271 (347)
T 3rhw_A          192 TSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLLTMTAQSAGINSQLPPVS  271 (347)
T ss_dssp             CEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHTSCCCS
T ss_pred             eeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHHHHHHHHHHHHhhCCCcc
Confidence            66778899999999999999999999999999999999999999999999889999999999999999876         


Q ss_pred             -hhhhhhhhhhHHHHHHHHHhhhhc
Q psy7487         228 -SFSIDVYLGTCFVMVFASLLGNYS  251 (439)
Q Consensus       228 -~~~i~~~~~~~~~~v~~slle~~~  251 (439)
                       +|+||+|+++|++++++|++|+..
T Consensus       272 ~v~~id~~~~~~~~~v~~slle~~~  296 (347)
T 3rhw_A          272 YIKAIDVWIGACMTFIFCALLEFAL  296 (347)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeHHHHHHHHHHHHHHHHHHHHHH
Confidence             389999999999999999999743

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=6e-54  Score=425.75  Aligned_cols=247  Identities=19%  Similarity=0.362  Sum_probs=223.6

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+||||+|||.  +|++.+.++.+   +||+||+++.|++++.+|.....+  +.|+
T Consensus        36 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~~~~--~~v~  110 (370)
T 2bg9_E           36 LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSE---LLWLPDVVLENNVDGQFEVAYYAN--VLVY  110 (370)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGG---GSCCCCEEESSSCCSCCBSSSSCC--CEEC
T ss_pred             ehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechh---ccCCCCEeeccccCCccccccccc--EEEE
Confidence            5789999999999999999999999999999984  78899999987   999999999999998887665555  5799


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe-
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI-  158 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~-  158 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++ .++.++...++||++.+........ 
T Consensus       111 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~-~~~~~~~~~~~eW~l~~~~~~~~~~~  189 (370)
T 2bg9_E          111 NDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEE-GIDPEDFTENGEWTIRHRPAKKNYNW  189 (370)
T ss_dssp             SSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSC-CCGGGSCCTTSSEEEEECCCCEECCC
T ss_pred             CCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCC-cccHhhcccccEEEEecceeEEEEEe
Confidence            99999999999999999999999999999999999999999999999998642 4556666778999999887655443 


Q ss_pred             --ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         159 --SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       159 --~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                        .+++|+|+++++++++||+++||++++++|++++++++|++||+|+++.++|+++|+|++|+|++++..         
T Consensus       190 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S  269 (370)
T 2bg9_E          190 QLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETS  269 (370)
T ss_dssp             CTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCcc
Confidence              346889999999999999999999999999999999999999999998899999999999999998865         


Q ss_pred             --hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         228 --SFSIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       228 --~~~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                        +|+||+|+.+|++++++|++|+...+.
T Consensus       270 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~  298 (370)
T 2bg9_E          270 LNVPLIGKYLIFVMFVSLVIVTNCVIVLN  298 (370)
T ss_dssp             HHSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhhhee
Confidence              489999999999999999999865544

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=4.6e-53  Score=419.18  Aligned_cols=245  Identities=22%  Similarity=0.424  Sum_probs=222.6

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  +|++.+.++.+   +||+||+++.|++++.+|.....+  +.++
T Consensus        37 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~~~~--~~v~  111 (370)
T 2bg9_B           37 LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLMNNNDGSFEITLHVN--VLVQ  111 (370)
T ss_dssp             EEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESS---SSCCCCEEESSCCCSCEESSSSCE--EEEE
T ss_pred             ehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechh---hccCCCccccccccccccccccce--EEEe
Confidence            6789999999999999999999999999999984  78999999987   999999999999998887665444  7899


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS  159 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~  159 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..+ +.++.++...++||++.+.....+ +.
T Consensus       112 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~-~~~~~~~~~~~~eW~l~~~~~~~~-y~  189 (370)
T 2bg9_B          112 HTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALD-AMINQDAFTENGQWSIEHKPSRKN-WR  189 (370)
T ss_dssp             TTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCC-CCCSTTSCCTTCSSEECCCCEEEC-CC
T ss_pred             CCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccC-CccccccccccceEEEeccceEEe-ec
Confidence            9999999999999999999999999999999999999999999999999322 345566677899999998877655 56


Q ss_pred             cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------h
Q psy7487         160 LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------S  228 (439)
Q Consensus       160 ~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~  228 (439)
                      +++|+|+++++++++||+++||++++++|++++++++|++||+|++ .++|+++|+|++|+|++++..           +
T Consensus       190 ~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~v  268 (370)
T 2bg9_B          190 SDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSV  268 (370)
T ss_dssp             TTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCccccc
Confidence            6789999999999999999999999999999999999999999999 699999999999999998875           4


Q ss_pred             hhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         229 FSIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       229 ~~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                      |+||+|+.+|++++++|++|+...+.
T Consensus       269 p~i~~~~~~~~~~v~~sll~~v~v~~  294 (370)
T 2bg9_B          269 PIIISYLMFIMILVAFSVILSVVVLN  294 (370)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            89999999999999999999865544

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=7e-53  Score=417.68  Aligned_cols=242  Identities=20%  Similarity=0.386  Sum_probs=219.5

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  +|++.+.++.+   +||+||+++.|++++.+|.....+  +.|+
T Consensus        39 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~~~~--~~i~  113 (369)
T 2bg9_C           39 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQNNNDGQYNVAYFCN--VLVR  113 (369)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGG---GSCCCCEEETTTCSSCCBSSSSCC--EEEC
T ss_pred             ehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHH---hccCCcEecccccccccccccccc--EEEE
Confidence            5789999999999999999999999999999984  78999999987   999999999999998887765544  7899


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe-
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI-  158 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~-  158 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.     .+.++...++||++.+........ 
T Consensus       114 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~-----~~~~~~~~~~ew~l~~~~~~~~~~~  188 (369)
T 2bg9_C          114 PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLI-----IDPEAFTENGEWEIIHKPAKKNIYG  188 (369)
T ss_dssp             SSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECC-----CGGGSCCTTSSEEEEECCEEEEECC
T ss_pred             CCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEe-----cccccceeCCEEEEeeeeEEEEEEe
Confidence            99999999999999999999999999999999999999999999999982     234456678999999887766553 


Q ss_pred             --ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         159 --SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       159 --~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                        .+++|+|+++++++++||+++||++++++|++++++++|++||+|++ .++|+++|+|++|+|++++..         
T Consensus       189 ~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S  267 (369)
T 2bg9_C          189 DKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETA  267 (369)
T ss_dssp             CSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCc
Confidence              34588999999999999999999999999999999999999999999 599999999999999998875         


Q ss_pred             --hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         228 --SFSIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       228 --~~~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                        +|+||+|+.+|++++++|++|+...+.
T Consensus       268 ~~vp~i~~~~~~~~~~v~~sll~~v~v~~  296 (369)
T 2bg9_C          268 LAVPLIGKYLMFIMSLVTGVVVNCGIVLN  296 (369)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHhheee
Confidence              489999999999999999999866554

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=100.00  E-value=5e-52  Score=405.00  Aligned_cols=242  Identities=22%  Similarity=0.375  Sum_probs=219.6

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC-CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR-PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH   80 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~-~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~   80 (439)
                      +.+|.++||++|++++++|++|+|+||||+|||. .+++.+.++.+   +||+||+++.|++++.    ..++..+++++
T Consensus        28 l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~~~---~IW~PDi~l~N~~~~~----~~~~~~~~v~~  100 (321)
T 3tlw_A           28 LIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENAR----DADVVDISVSP  100 (321)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTCCSSEECCGG---GSCCCCEEESSBSSCC----EEEEEEEEECT
T ss_pred             EEeecceeccCcEEEEEEEEeeEEECcccCCCCccCCeeeeccccc---CeEcCcEEeecccccc----cccceeEEEeC
Confidence            6789999999999999999999999999999984 35888888888   9999999999999886    34567799999


Q ss_pred             cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeE--e
Q psy7487          81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE--I  158 (439)
Q Consensus        81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~--~  158 (439)
                      ||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.+  ++++.+++..++||++.+....++.  .
T Consensus       101 ~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~~~~~~~~~ew~l~~~~~~~~~~~~  178 (321)
T 3tlw_A          101 DGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL--EKVGKNDDVFLTGWDIESFTAVVKPANF  178 (321)
T ss_dssp             TCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECG--GGCEECTTCCBTTEEEEEEEEEEEEEEE
T ss_pred             CccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcC--CcccccccccccceEEEeeEeEEeeEEe
Confidence            99999999999999999999999999999999999999999999999985  3566677888999999998876543  4


Q ss_pred             ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh----------h
Q psy7487         159 SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL----------S  228 (439)
Q Consensus       159 ~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~----------~  228 (439)
                      .+++|+|+++++++++||+++||++++++|++++++++|++|| |+++ ++|+++|+|++|++++++..          +
T Consensus       179 ~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~-~~Rv~l~it~lL~~t~~~~~~~~~lP~~s~v  256 (321)
T 3tlw_A          179 ALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSY-EANVTLVVSTLIAHIAFNILVETCLPKTPYM  256 (321)
T ss_dssp             EETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred             cCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCC-CCcEEEEhhHHHHHHHHHHHHHhhCCCcccc
Confidence            4578999999999999999999999999999999999999999 6654 89999999999999999886          4


Q ss_pred             hhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         229 FSIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       229 ~~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                      |+||+|+++|++++++|++|+.....
T Consensus       257 p~i~~~~~~~~~~v~~sll~~v~v~~  282 (321)
T 3tlw_A          257 TYTGAIIFMIYLFYFVAVIEVTVQHY  282 (321)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            89999999999999999999855544

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=100.00  E-value=1.2e-52  Score=416.51  Aligned_cols=245  Identities=18%  Similarity=0.341  Sum_probs=221.9

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+||||+|||.  +|++.+.++.+   +||+||+++.|++++++|...  +..++++
T Consensus        37 l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~---~IW~PDi~~~N~~~~~~~~~~--~~~~~i~  111 (370)
T 2bg9_A           37 LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDFAIVH--MTKLLLD  111 (370)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGG---GSCCCCEEETTCCCSCEESCS--SCEEEEC
T ss_pred             ehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechh---hccCCcEeccccccccccccc--cceEEEE
Confidence            5789999999999999999999999999999985  67889999987   999999999999998877654  3569999


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS  159 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~  159 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|.++  .++.++...++||++.+....+....
T Consensus       112 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~~~~~~~~~ew~l~~~~~~~~~~~  189 (370)
T 2bg9_A          112 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPESD--RPDLSTFMESGEWVMKDYRGWKHWVY  189 (370)
T ss_dssp             SSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCCC--CCSTTSCCTTCSSEEEEEEEEEEECC
T ss_pred             CCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecCC--CcccccccccceEEEEcceEEEEEEe
Confidence            9999999999999999999999999999999999999999999999998763  45566677899999999877665544


Q ss_pred             cC--C-CceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         160 LT--T-GNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       160 ~~--~-~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                      +.  + |+|+++++++++||+++||.+++++|++++++++|++||+|+++ ++|+++|+|++|+|++++..         
T Consensus       190 y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S  268 (370)
T 2bg9_A          190 YTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTS  268 (370)
T ss_dssp             CSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCc
Confidence            43  3 78999999999999999999999999999999999999999998 89999999999999998875         


Q ss_pred             --hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         228 --SFSIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       228 --~~~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                        +|+||+|+++|++++++|++|+...+.
T Consensus       269 ~~vp~i~~~~~~~~~~v~~sl~~~~~v~~  297 (370)
T 2bg9_A          269 SAVPLIGKYMLFTMIFVISSIIVTVVVIN  297 (370)
T ss_dssp             HHSCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              489999999999999999999865544

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=100.00  E-value=2.2e-52  Score=423.43  Aligned_cols=248  Identities=17%  Similarity=0.339  Sum_probs=223.4

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  +|++.+.++++   +||+||+++.|+++++++.....  .++|+
T Consensus        61 l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~---~IW~PDi~l~N~~d~~~~~~~~~--~v~v~  135 (461)
T 4aq5_A           61 LIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDFAIVHMT--KLLLD  135 (461)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGG---GSCCCCEEESSCCCSCCTTCSSC--EEEEC
T ss_pred             EeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCC---CEECCceeeeccccccccccccc--ceEEc
Confidence            5789999999999999999999999999999985  68899999987   99999999999999887754333  48999


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS  159 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~  159 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..  +.++.++...++||++.+....+....
T Consensus       136 ~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~l~~~~~~~eW~l~~~~~~~~~~~  213 (461)
T 4aq5_A          136 YTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES--DRPDLSTFMESGEWVMKDYRGWKHWVY  213 (461)
T ss_dssp             SBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCC--CCCSGGGCCTTCSSEEEEEEEEEEECC
T ss_pred             CCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEecc--ccccHHhhhccCceEEeeeeeEEEEEe
Confidence            999999999999999999999999999999999999999999999999865  345666677899999999877665544


Q ss_pred             c--CCC-ceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---------
Q psy7487         160 L--TTG-NYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---------  227 (439)
Q Consensus       160 ~--~~~-~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---------  227 (439)
                      +  ++| +|+++++++++||+++||++++++|++++++++|++||+|++++ +|+++|+|++|++++++..         
T Consensus       214 y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~-eRv~LgiT~LLt~tvfl~~v~~~LP~tS  292 (461)
T 4aq5_A          214 YTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTS  292 (461)
T ss_dssp             CSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEecccccc-ceeehhHHHHHHHHHHHHHHHhhcCccc
Confidence            3  446 89999999999999999999999999999999999999999985 9999999999999998876         


Q ss_pred             --hhhhhhhhhhHHHHHHHHHhhhhccceeeE
Q psy7487         228 --SFSIDVYLGTCFVMVFASLLGNYSRLACEI  257 (439)
Q Consensus       228 --~~~i~~~~~~~~~~v~~slle~~~~l~~~~  257 (439)
                        +|+||+|+++|++++++|++|+...+..+.
T Consensus       293 ~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~  324 (461)
T 4aq5_A          293 SAVPLIGKYMLFTMIFVISSIIVTVVVINTHH  324 (461)
T ss_dssp             HHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHhhheeeec
Confidence              389999999999999999999866655443

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=100.00  E-value=3.8e-52  Score=424.90  Aligned_cols=251  Identities=19%  Similarity=0.356  Sum_probs=222.5

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||  ++|++.+.++.+   +||+||+++.|++++.+|.....|  +.|+
T Consensus        36 l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~---~IW~PDi~l~N~~d~~~~~~~~~n--v~v~  110 (488)
T 4aq5_E           36 LTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSE---LLWLPDVVLENNVDGQFEVAYYAN--VLVY  110 (488)
T ss_dssp             EEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCCTT---SSCCCCEECSSSCCSCCBSCSSSC--CCBC
T ss_pred             EeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecCcc---CEECCceehhcccccccccccccc--EEEe
Confidence            678999999999999999999999999999998  478999999987   999999999999999888766555  5699


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCC------ceeecCccccCceEEeeeEE
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN------SVGVSNEVSLPQFKVLGHRQ  153 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~------~~~~~~~~~~~~w~l~~~~~  153 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++.      .++.++...++||++.+...
T Consensus       111 ~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~  190 (488)
T 4aq5_E          111 NDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPA  190 (488)
T ss_dssp             TTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCC
T ss_pred             CCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEE
Confidence            999999999999999999999999999999999999999999999999986431      12334556789999988765


Q ss_pred             eeeEe-e--cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh---
Q psy7487         154 KDLEI-S--LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL---  227 (439)
Q Consensus       154 ~~~~~-~--~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~---  227 (439)
                      ..... .  ++++.|+++++++++||+++||++++++||+++++++|++||+|+++.++|+++|+|+||++++++.+   
T Consensus       191 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~  270 (488)
T 4aq5_E          191 KKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQ  270 (488)
T ss_dssp             EEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHh
Confidence            44322 1  23567999999999999999999999999999999999999999998899999999999999999875   


Q ss_pred             --------hhhhhhhhhhHHHHHHHHHhhhhccceeeE
Q psy7487         228 --------SFSIDVYLGTCFVMVFASLLGNYSRLACEI  257 (439)
Q Consensus       228 --------~~~i~~~~~~~~~~v~~slle~~~~l~~~~  257 (439)
                              +|+||+|+++|++++++|++++...+..+.
T Consensus       271 ~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~  308 (488)
T 4aq5_E          271 KVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSL  308 (488)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEc
Confidence                    489999999999999999999977665554

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=100.00  E-value=2.5e-51  Score=421.81  Aligned_cols=250  Identities=20%  Similarity=0.372  Sum_probs=219.4

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||  ++|++.+.++.+   +||+||+++.|++++.+|.....|  +.|+
T Consensus        60 l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~---~IW~PDi~l~N~~d~~~~~~~~~n--v~V~  134 (522)
T 4aq5_C           60 LSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE---LIWIPDIVLQNNNDGQYNVAYFCN--VLVR  134 (522)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGG---GSCCCCEEETTTCSSCCBSCSSCC--EEEC
T ss_pred             eeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccC---CEECCcEeccccccCCccccccce--EEEe
Confidence            578999999999999999999999999999998  478999999998   999999999999999888765555  6799


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCC----------ceeecCccccCceEEe
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN----------SVGVSNEVSLPQFKVL  149 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~----------~~~~~~~~~~~~w~l~  149 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++.          .++.++...++||++.
T Consensus       135 ~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~  214 (522)
T 4aq5_C          135 PNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEII  214 (522)
T ss_dssp             SSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC---------------CCSTTSCCTTCSEEEE
T ss_pred             CCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccccCccceeeeccHHHceecceEEEe
Confidence            999999999999999999999999999999999999999999999999976421          1233445678999998


Q ss_pred             eeEEeeeEe-e--cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhh
Q psy7487         150 GHRQKDLEI-S--LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQV  226 (439)
Q Consensus       150 ~~~~~~~~~-~--~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~  226 (439)
                      +........ .  ++++.|+++++++++||+++||++++++||+++++++|++||+|++ .++|+++|+|+||++++++.
T Consensus       215 ~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~  293 (522)
T 4aq5_C          215 HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLL  293 (522)
T ss_dssp             ECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHH
Confidence            876554432 1  2356799999999999999999999999999999999999999999 69999999999999999987


Q ss_pred             h-----------hhhhhhhhhhHHHHHHHHHhhhhccceeeE
Q psy7487         227 L-----------SFSIDVYLGTCFVMVFASLLGNYSRLACEI  257 (439)
Q Consensus       227 ~-----------~~~i~~~~~~~~~~v~~slle~~~~l~~~~  257 (439)
                      +           +|+||+|+++|++++++|++++.-.+..+.
T Consensus       294 ~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~  335 (522)
T 4aq5_C          294 LTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHF  335 (522)
T ss_dssp             HHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEc
Confidence            6           489999999999999999999976665544

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=100.00  E-value=7e-51  Score=397.09  Aligned_cols=244  Identities=24%  Similarity=0.362  Sum_probs=212.8

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcc-----cCCccccceEEeeccccceeeeeccceeE
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDF-----IKNIWVPDTFFVNEKQSYFHIATTSNEFI   76 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~-----~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v   76 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|+   |++.+.++.++     .++||+||+++.|++++.+    .++..+
T Consensus        20 l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~---~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~----~~~~~~   92 (322)
T 3rqw_A           20 INKIYGVNTLEQTYKVDGYIVAQWTGKPRKTP---GDKPLIVENTQIERWINNGLWVPALEFINVVGSPD----TGNKRL   92 (322)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECSCCCCS---TTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE----EEEEEE
T ss_pred             EEeeccccccCcEEEEEEEEeeEEechhhCCC---CCCceeecchhhcccccccccCCcEEEEcccCccc----ccceeE
Confidence            67899999999999999999999999999995   55667665433     4599999999999999876    456679


Q ss_pred             EEeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEE-eeeEEe-
Q psy7487          77 RIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKV-LGHRQK-  154 (439)
Q Consensus        77 ~i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l-~~~~~~-  154 (439)
                      ++++||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|+++......+ + +++||++ .+.... 
T Consensus        93 ~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~-~-~~~ew~l~~~~~~~~  170 (322)
T 3rqw_A           93 MLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENIDN-E-EIDEWWIRGKASTHI  170 (322)
T ss_dssp             EECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSSS-C-SSSSEEECCSCEECC
T ss_pred             EEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccCC-C-CCCceEEEeeeEEEe
Confidence            99999999999999999999999999999999999999999999999999997543112222 3 7899999 888776 


Q ss_pred             -----eeEee--cCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh
Q psy7487         155 -----DLEIS--LTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL  227 (439)
Q Consensus       155 -----~~~~~--~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~  227 (439)
                           ++...  +++|+|+++++++++||+++||.+++++|++++++++|++||+|  +.++|+++|+|++|++++++..
T Consensus       171 ~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~  248 (322)
T 3rqw_A          171 SDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFY  248 (322)
T ss_dssp             EEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHH
Confidence                 33322  34789999999999999999999999999999999999999999  4599999999999999999886


Q ss_pred             ----------hhhhhhhhhhHHHHHHHHHhhhhccceee
Q psy7487         228 ----------SFSIDVYLGTCFVMVFASLLGNYSRLACE  256 (439)
Q Consensus       228 ----------~~~i~~~~~~~~~~v~~slle~~~~l~~~  256 (439)
                                +|+||+|+++|++++++|++|+...+..+
T Consensus       249 ~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~  287 (322)
T 3rqw_A          249 TSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQ  287 (322)
T ss_dssp             HHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      48999999999999999999986555433

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=100.00  E-value=9.2e-52  Score=422.59  Aligned_cols=248  Identities=23%  Similarity=0.414  Sum_probs=220.8

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC--CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ--RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~--~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||  ++|++.++++.+   +||+||+++.|++++.++.....+  +.|+
T Consensus        61 l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~---~IW~PDi~l~N~~d~~~~~~~~~n--v~v~  135 (493)
T 4aq5_B           61 LTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSD---DVWQPDIVLMNNNDGSFEITLHVN--VLVQ  135 (493)
T ss_dssp             EEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSC---SSCCCCCEESSCCCSCEESSSSSC--EEEC
T ss_pred             EeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccc---cCccCcEEEecccccccccccccc--eEEe
Confidence            678999999999999999999999999999998  479999999988   999999999999999887665555  7799


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCC--------ceeecCccccCceEEeee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPN--------SVGVSNEVSLPQFKVLGH  151 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~--------~~~~~~~~~~~~w~l~~~  151 (439)
                      +||+|.|..|.+.++.|+||+++||||+|+|+++|+||+|+.+++++.|..++.        .++.++...++||++.+.
T Consensus       136 ~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~  215 (493)
T 4aq5_B          136 HTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIEHK  215 (493)
T ss_dssp             TTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCCCC
T ss_pred             cCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCccceecccccHHHhccccceeeeee
Confidence            999999999999999999999999999999999999999999999999965431        233445567889999887


Q ss_pred             EEeeeEeecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh----
Q psy7487         152 RQKDLEISLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL----  227 (439)
Q Consensus       152 ~~~~~~~~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~----  227 (439)
                      ........+ +++|+++++++++||+++||++++++||+++++++|++||+|+++ ++|+++|+|++|++++++..    
T Consensus       216 ~~~~~~~~~-~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~  293 (493)
T 4aq5_B          216 PSRKNWRSD-DPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADK  293 (493)
T ss_dssp             CCEECCCTT-SSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeecC-CCCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhc
Confidence            665443333 348999999999999999999999999999999999999999997 89999999999999998876    


Q ss_pred             -------hhhhhhhhhhHHHHHHHHHhhhhccceee
Q psy7487         228 -------SFSIDVYLGTCFVMVFASLLGNYSRLACE  256 (439)
Q Consensus       228 -------~~~i~~~~~~~~~~v~~slle~~~~l~~~  256 (439)
                             +|+||+|+++|++++++|++++...+..+
T Consensus       294 LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~  329 (493)
T 4aq5_B          294 VPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLH  329 (493)
T ss_dssp             TTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccccCCCchHhHHHHHHHHHHHHHHHHHhheeee
Confidence                   38999999999999999999996665544

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=100.00  E-value=1.5e-38  Score=291.07  Aligned_cols=170  Identities=18%  Similarity=0.304  Sum_probs=154.0

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  +|++.+.++.+   +||+||+++.|++++.++....  ..++|+
T Consensus        38 l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~---~iW~PDi~~~N~~~~~~~~~~~--~~~~v~  112 (212)
T 2qc1_B           38 LIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSE---KIWRPDVVLYNNADGDFAIVKF--TKVLLD  112 (212)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGG---GSCCCCEEECCBTTTSSCEECC--CCEEEE
T ss_pred             EecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchh---hccCCceeccccccccccccce--eeEEEE
Confidence            5789999999999999999999999999999984  78999999987   9999999999999988876644  459999


Q ss_pred             ecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEee
Q psy7487          80 HSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEIS  159 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~  159 (439)
                      +||+|.|..|++.++.|+||+++||||+|+|+++|+||+|+.+++++.|..+  .+..++...++||++.+.....+...
T Consensus       113 ~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~--~~~~~~~~~~~ew~l~~~~~~~~~~~  190 (212)
T 2qc1_B          113 YTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPESD--QPDLSNFMESGEWVIKEARGWKHWVF  190 (212)
T ss_dssp             TTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESCS--SCBCTTCCCCSSEEEEEEEEEEEEEE
T ss_pred             CCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEeccc--ccchhhCccCCCEEEEEeEEEEEEEe
Confidence            9999999999999999999999999999999999999999999999999864  46667778899999999988776554


Q ss_pred             cC--C-CceeeEEEEEEEEeee
Q psy7487         160 LT--T-GNYSRLACEIQFVRSM  178 (439)
Q Consensus       160 ~~--~-~~~s~l~~~~~l~R~~  178 (439)
                      +.  + |+|++++++|++||+|
T Consensus       191 y~~~~~~~y~~i~~~~~l~R~p  212 (212)
T 2qc1_B          191 YSCCPTTPYLDITYHFVMQRLP  212 (212)
T ss_dssp             ETTCSSCCEEEEEEEEEEEECC
T ss_pred             cCCCCCCCeeEEEEEEEEEECc
Confidence            43  4 8999999999999986

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=100.00  E-value=5.2e-38  Score=284.18  Aligned_cols=171  Identities=22%  Similarity=0.307  Sum_probs=141.7

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC-CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR-PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH   80 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~-~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~   80 (439)
                      |.+|.++||++|++++++|++|+|+|+||+|||. +|++.+.++.+   +||+||+++.|+++...    ..+..++|++
T Consensus        24 l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~~~---~IW~PDi~l~N~~~~~~----~~~~~v~v~~   96 (201)
T 3igq_A           24 LIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPE---AIWIPEIRFVNVENARD----ADVVDISVSP   96 (201)
T ss_dssp             EEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHTCSCEECCGG---GSCCCCEEESSBSSSCE----EEEEEEEECT
T ss_pred             eeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCCEeEeccccc---CcCccCEEEEccccccc----ccceEEEEeC
Confidence            6789999999999999999999999999999984 57888999988   99999999999987642    3466799999


Q ss_pred             cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--
Q psy7487          81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI--  158 (439)
Q Consensus        81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~--  158 (439)
                      ||+|.|..|++.++.|+||+++||||+|+|+++|+||+|+.+++++.|.+  ..+..+++..++||++.+....+...  
T Consensus        97 ~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~--~~~~~~~~~~~~ew~l~~~~~~~~~~~y  174 (201)
T 3igq_A           97 DGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL--EKVGKNDDVFLTGWDIESFTAVVKPANF  174 (201)
T ss_dssp             TCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG--GGCEESCSEEETTEEEEEEEEEEEC---
T ss_pred             CCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC--CccccccCcccCCeEEEeeEEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999975  45677788899999999998876553  


Q ss_pred             ecCCCceeeEEEEEEEEeeeeEE
Q psy7487         159 SLTTGNYSRLACEIQFVRSMGYY  181 (439)
Q Consensus       159 ~~~~~~~s~l~~~~~l~R~~~~y  181 (439)
                      .+++++|+++++++.+||+-+.+
T Consensus       175 ~cc~~~y~~i~f~i~irR~~~~~  197 (201)
T 3igq_A          175 ALEDRLESKLDYQLRISRQGGHH  197 (201)
T ss_dssp             -----CCCEEEEEEEEEEC----
T ss_pred             CCCCCccCeEEEEEEEEECCCCC
Confidence            45678999999999999998764

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=100.00  E-value=1.8e-37  Score=280.56  Aligned_cols=165  Identities=17%  Similarity=0.351  Sum_probs=148.0

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC-CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH   80 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~-~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~   80 (439)
                      |.+|.++||++|++++++|++|+|+|+||+||| ++|++.+.++++   +||+||+++.|+++...+   ..+..++|++
T Consensus        37 l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~~~---~IW~PDi~l~N~~~~~~~---~~~~~v~v~~  110 (205)
T 4aoe_A           37 LQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTLPSK---YIWLPHIEVYNSIGKPGI---HSDQLVRVYK  110 (205)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEEGG---GSCCCCCEETTBSSCCEE---CSCCEEEEET
T ss_pred             EEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEeCHH---HhccccEEEecccccccc---ccceEEEEeC
Confidence            678999999999999999999999999999998 589999999998   999999999999875432   3456799999


Q ss_pred             cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--
Q psy7487          81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI--  158 (439)
Q Consensus        81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~--  158 (439)
                      ||+|.|..|.+.+++|+|| ..||||+|+|+++|+||+|+.+++.+.+.+   .++.+++..++||++.+....++..  
T Consensus       111 ~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~---~~dl~~~~~n~EW~l~~~~~~r~~~~Y  186 (205)
T 4aoe_A          111 DGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQ---QVDLTTYAGGERFQLIEAKQKVNKKTY  186 (205)
T ss_dssp             TSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSS---SCBCTTSCTTCSEEEEEEEEEEEEEEE
T ss_pred             CcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecCc---ccchhccccCCcEEEEeeEEEEEEEEe
Confidence            9999999999999999999 899999999999999999999999997543   4567778889999999998876654  


Q ss_pred             ecCCCceeeEEEEEEEEe
Q psy7487         159 SLTTGNYSRLACEIQFVR  176 (439)
Q Consensus       159 ~~~~~~~s~l~~~~~l~R  176 (439)
                      .||+++|+++++++++||
T Consensus       187 ~CC~~~y~dit~~i~lrR  204 (205)
T 4aoe_A          187 PCCPQSFEDIELRVTFKK  204 (205)
T ss_dssp             TTEEEEEEEEEEEEEEEE
T ss_pred             CCCCCCcceEEEEEEEEE
Confidence            456899999999999999

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=100.00  E-value=2.6e-37  Score=280.08  Aligned_cols=165  Identities=18%  Similarity=0.362  Sum_probs=148.3

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCC-CCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEee
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQ-RPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHH   80 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~-~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~   80 (439)
                      |.+|.++||++|++++++|++|+|+|+||+||+ ++|++.+.++.+   +||+||+++.|+++...   ...+..++|++
T Consensus        37 l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v~~~---~IW~PDi~l~N~~~~~~---~~~~~~~~v~~  110 (205)
T 4aod_A           37 LQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTVPIA---EIWTPDIFIFDSVGAPE---IFSDKLARVSQ  110 (205)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEEGG---GSCCCCEEETTBSSCCE---ECSCCEEEEET
T ss_pred             eeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEeeccHH---hcCcCCEEEEcccccce---eecceEEEEec
Confidence            679999999999999999999999999999998 589999999998   99999999999987642   34456699999


Q ss_pred             cceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--
Q psy7487          81 SGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI--  158 (439)
Q Consensus        81 ~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~--  158 (439)
                      ||+|.|..|...+++|+||+.+|||| |+|+++|+||+|+.+++.+.|+.   .++.+++..++||++.+....++..  
T Consensus       111 ~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~---~~dl~~~~~n~EW~l~~~~~~~~~~~Y  186 (205)
T 4aod_A          111 DGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNA---KVDLGDYASDTRFQLLNATQQVNRKQY  186 (205)
T ss_dssp             TSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSS---SCBCTTSCTTCSSEEEEEEEEEEEEEE
T ss_pred             CCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECC---CcccccccccCCEEEEeeEEEEEEEEe
Confidence            99999999999999999999999999 99999999999999999999865   3566778889999999988876654  


Q ss_pred             ecCCCceeeEEEEEEEEe
Q psy7487         159 SLTTGNYSRLACEIQFVR  176 (439)
Q Consensus       159 ~~~~~~~s~l~~~~~l~R  176 (439)
                      .+++++|+++++++++||
T Consensus       187 ~cc~~~Y~~it~~~~lrR  204 (205)
T 4aod_A          187 PCCPETYEDTTLSFTFRK  204 (205)
T ss_dssp             TTEEEEEEEEEEEEEEEC
T ss_pred             CCCCCCcceEEEEEEEEC
Confidence            455889999999999977

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=100.00  E-value=5.2e-37  Score=278.75  Aligned_cols=163  Identities=20%  Similarity=0.364  Sum_probs=147.3

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccc--cceeeeeccceeEE
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQ--SYFHIATTSNEFIR   77 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~--~~~~~~~~~~~~v~   77 (439)
                      |.+|.++||++|++++++|++|+|+|+||+|||.  +|++.+.++.+   +||+||+++.|+++  +.++..     .++
T Consensus        35 l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~---~iW~PDi~~~N~~~~~~~~~~~-----~v~  106 (204)
T 3sq6_A           35 LLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS---SLWVPDLAAYNAISKPEVLTPQ-----LAL  106 (204)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGG---GSCCCCEEETTBSSCCEECSCC-----EEE
T ss_pred             hhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHH---HCcCCCEEeEcccccCCccccc-----EEE
Confidence            5789999999999999999999999999999984  78999999987   99999999999998  655432     699


Q ss_pred             EeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeE
Q psy7487          78 IHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLE  157 (439)
Q Consensus        78 i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~  157 (439)
                      |++||+|.|..|++.++.|+||+ +||||+|+|+++|+||+|+.+++.+.|..    +..++...++||++.+....+..
T Consensus       107 v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~~----~~~~~~~~~~eW~l~~~~~~~~~  181 (204)
T 3sq6_A          107 VNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQE----ADISGYIPYSRFELVGVTQKRSE  181 (204)
T ss_dssp             EETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECCC----CCCTTSCSSSSEEEEEEEEEEEE
T ss_pred             EEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEecc----CCHHHcccCCCEEEEEeEEEEEE
Confidence            99999999999999999999999 99999999999999999999999999753    34556778999999999887766


Q ss_pred             eec--CCCceeeEEEEEEEEee
Q psy7487         158 ISL--TTGNYSRLACEIQFVRS  177 (439)
Q Consensus       158 ~~~--~~~~~s~l~~~~~l~R~  177 (439)
                      ..+  ++++|+++.+++++||+
T Consensus       182 ~~y~~c~~~y~~i~~~~~lrRr  203 (204)
T 3sq6_A          182 RFYECCKEPYPDVTFTVTFRKK  203 (204)
T ss_dssp             EECSSSSSEEEEEEEEEEEEEC
T ss_pred             EeeCCCCCCcceEEEEEEEEEC
Confidence            544  48899999999999997

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=100.00  E-value=8.5e-37  Score=282.16  Aligned_cols=174  Identities=15%  Similarity=0.271  Sum_probs=150.0

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  +|++.+.++.+   +||+||+++.|++++.++..   +..++|+
T Consensus        46 l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~---~IW~PDi~l~N~~~~~~~~~---~~~v~i~  119 (228)
T 2wn9_A           46 LQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAA---DIWTPDITAYSSTRPVQVLS---PQIAVVT  119 (228)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGG---GSCCCCEEESSBSSCCEECS---CCEEEEE
T ss_pred             hhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHH---HccCCceecccccccccccc---cceEEEe
Confidence            5789999999999999999999999999999984  78999999987   99999999999999887764   6779999


Q ss_pred             ecceEEEeeeceeEEeec---eeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeee
Q psy7487          80 HSGSITRSIRLTITASCP---MNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDL  156 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~---~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~  156 (439)
                      +||+|.|..|++.+++|+   ||++    |+|+|+++|+||+|+.+++.+.|..+  .+..++...++||++.+....+.
T Consensus       120 ~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~~--~~~~~~~~~~~ew~l~~~~~~~~  193 (228)
T 2wn9_A          120 HDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDTD--QVDLSSYYASSKYEILSATQTRQ  193 (228)
T ss_dssp             TEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSCS--BCBCTTCCTTCSEEEEEEEEEEE
T ss_pred             CCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecCC--ccchhhceecCCEEEEEEEEEEE
Confidence            999999999999999999   9999    99999999999999999999999763  45666677899999999887666


Q ss_pred             Eee--cCCCceeeEEEEEEEEeeeeEEEEeeeh
Q psy7487         157 EIS--LTTGNYSRLACEIQFVRSMGYYLIQIYI  187 (439)
Q Consensus       157 ~~~--~~~~~~s~l~~~~~l~R~~~~y~~~i~l  187 (439)
                      ...  +++|+|++++++|++||+++||++++++
T Consensus       194 ~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil  226 (228)
T 2wn9_A          194 VQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL  226 (228)
T ss_dssp             EECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred             EEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence            543  4579999999999999999999999864

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=100.00  E-value=4.3e-36  Score=276.88  Aligned_cols=171  Identities=14%  Similarity=0.261  Sum_probs=146.8

Q ss_pred             cccccccccc----ceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeecccee
Q psy7487           2 LESVLKLKFR----SEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEF   75 (439)
Q Consensus         2 l~~i~~vde~----~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~   75 (439)
                      |.+|.++||+    +|++++++|++|+|+|+||+|||.  +|++.+.++.+   +||+||+++.|++++.++...  +..
T Consensus        42 l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~---~IW~PDi~l~N~~~~~~~~~~--~~~  116 (230)
T 4afh_A           42 LQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPD---EIWTPDIKLFNSVDLDMTLDR--TTQ  116 (230)
T ss_dssp             EEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGG---GSCCCCEEETTCSSSSCEECT--TSC
T ss_pred             HhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccC---CEECCcEEEEecccccccccc--cce
Confidence            5789999999    999999999999999999999984  78999999988   999999999999998877532  345


Q ss_pred             EEEeecceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEee
Q psy7487          76 IRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKD  155 (439)
Q Consensus        76 v~i~~~G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~  155 (439)
                      ++|++||+|.|..|++.++.|+|     |||+|+|+++|+||+|+.+++.+.|..+...++. +...++ |++.+....+
T Consensus       117 v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~d~-~~~~n~-W~l~~~~~~~  189 (230)
T 4afh_A          117 AIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEVLL-DFYQDS-LEILENSAQR  189 (230)
T ss_dssp             EEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSCBC-TTCCCC-CCEEEEEEEE
T ss_pred             EEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECCCCcccce-eeecCc-EEEEEEEEEE
Confidence            89999999999999999999999     9999999999999999999999999875444556 667788 9999998876


Q ss_pred             eEee--cCCCceeeEEEEEEEEeeeeEEEEe
Q psy7487         156 LEIS--LTTGNYSRLACEIQFVRSMGYYLIQ  184 (439)
Q Consensus       156 ~~~~--~~~~~~s~l~~~~~l~R~~~~y~~~  184 (439)
                      ....  +++++|+++.+++++||+++||+.+
T Consensus       190 ~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~  220 (230)
T 4afh_A          190 QEVVYPCCESAYVEMKYLLALRSENGNSTYS  220 (230)
T ss_dssp             EEECCTTCSSCEEEEEEEEEEECC-------
T ss_pred             EEEecCCCCCCccEEEEEEEEEEeechhhcc
Confidence            6554  4578999999999999999999875

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=100.00  E-value=1.1e-35  Score=270.21  Aligned_cols=166  Identities=15%  Similarity=0.304  Sum_probs=151.0

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCccc-ccCCCCCeeEEEeCCcccCCccccceEEeec-cccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRL-AFRQRPGVETLSVGSDFIKNIWVPDTFFVNE-KQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL-~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~-~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+|| +|||.+|++.+.++.+   +||+||+++.|+ +++.+|..    ..++|+
T Consensus        33 l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~~i~~~~~~~~---~iW~PDi~~~N~~~~~~~~~~----~~v~i~  105 (203)
T 2bj0_A           33 LMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSSSLDQVSLPVS---KMWTPDLSFYNAIAAPELLSA----DRVVVS  105 (203)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTSSCSEEEEEGG---GSCCCCEEETTCSSCCEECSC----CEEEEE
T ss_pred             EEeEeeecCCCCEEEEEEEEEeEEECcchhccCccCCceEEEEchh---hccCCCccccccccccccccc----eEEEEe
Confidence            67899999999999999999999999999 9999778999999987   999999999999 99887765    459999


Q ss_pred             ecceEEEeeeceeEEeece-eeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe
Q psy7487          80 HSGSITRSIRLTITASCPM-NLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI  158 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~~-dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~  158 (439)
                      +||+|.|..|++.+++|+| |+++  ||+|+|+++|+||+|+.+++.+.|..+. ++..+++..++||++.+.....+..
T Consensus       106 ~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~~~-~~~~~~~~~~~ew~l~~~~~~~~~~  182 (203)
T 2bj0_A          106 KDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGEEG-VVNIAEYFDSPKFDLLSATQSLNRK  182 (203)
T ss_dssp             TTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECTTT-TSCTTTTCCCSSEEEEEEEEEEEEE
T ss_pred             CCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecCCC-ccchhcceecCCEEEEEeEEEEEEE
Confidence            9999999999999999999 9998  9999999999999999999999997532 2667778889999999998877665


Q ss_pred             ec--CCCceeeEEEEEEEEee
Q psy7487         159 SL--TTGNYSRLACEIQFVRS  177 (439)
Q Consensus       159 ~~--~~~~~s~l~~~~~l~R~  177 (439)
                      .+  ++|+|++++++|++||+
T Consensus       183 ~y~~~~~~y~~l~~~~~l~R~  203 (203)
T 2bj0_A          183 KYSCCENMYDDIEITFAFRKK  203 (203)
T ss_dssp             ECTTCSSEEEEEEEEEEEEEC
T ss_pred             ecCCCCCCeeEEEEEEEEEEC
Confidence            54  48999999999999996

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=100.00  E-value=2.6e-35  Score=269.43  Aligned_cols=168  Identities=20%  Similarity=0.343  Sum_probs=147.7

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCC--CCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEe
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQR--PGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH   79 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~--~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~   79 (439)
                      +.+|.++||++|++++++|++|+|+|+||+|||.  +|  .+.++.+   +||+||+++.|++++.  ....+ ..++|+
T Consensus        36 l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~---~iW~PDi~~~N~~~~~--~~~~~-~~~~i~  107 (211)
T 1uw6_A           36 FINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPIS---SLWVPDLAAYNAISKP--EVLTP-QLARVV  107 (211)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGG---GSCCCCEEETTBCSCC--EECSC-CEEEEE
T ss_pred             HHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHH---HccCCCEeeecccccc--cccee-eEEEEe
Confidence            5789999999999999999999999999999984  45  7889887   9999999999999987  33333 679999


Q ss_pred             ecceEEEeeeceeEEeec---eeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccc-cCceEEeeeEEee
Q psy7487          80 HSGSITRSIRLTITASCP---MNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVS-LPQFKVLGHRQKD  155 (439)
Q Consensus        80 ~~G~V~~~~r~~~~~~C~---~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~-~~~w~l~~~~~~~  155 (439)
                      +||+|.|..|++.++.|+   ||++    |+|+|+++|+||+|+.+++.+.|..+  .+..++... ++||++.+....+
T Consensus       108 ~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~~--~~~~~~~~~~~~ew~l~~~~~~~  181 (211)
T 1uw6_A          108 SDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTTE--NSDDSEYFSQYSRFEILDVTQKK  181 (211)
T ss_dssp             TTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECCC--SSCTTTTSCTTSSEEEEEEEEEE
T ss_pred             CCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEeccc--ccchhhhcccCCCEEEEeeEEEE
Confidence            999999999999999999   9999    99999999999999999999999763  456667788 9999999988766


Q ss_pred             eEee--cCCCceeeEEEEEEEEeeeeEEEE
Q psy7487         156 LEIS--LTTGNYSRLACEIQFVRSMGYYLI  183 (439)
Q Consensus       156 ~~~~--~~~~~~s~l~~~~~l~R~~~~y~~  183 (439)
                      ....  +++|+|+++++++++||+++||++
T Consensus       182 ~~~~y~~~~~~y~~l~~~~~l~R~~~yyil  211 (211)
T 1uw6_A          182 NSVTYSCCPEAYEDVEVSLNFRKKGRSEIL  211 (211)
T ss_dssp             EEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred             EEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence            5544  458999999999999999999974

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.71  E-value=1.2e-21  Score=164.59  Aligned_cols=97  Identities=15%  Similarity=0.142  Sum_probs=92.7

Q ss_pred             cccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccc
Q psy7487         341 LLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVK  419 (439)
Q Consensus       341 l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~k  419 (439)
                      ..|.|+++...|.++||.+||..|.|+|+.+++++||++||+++++ ++|+++|++++|+++++....++.+|++| |++
T Consensus        32 ~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vP  110 (140)
T 2lkg_A           32 EAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVP  110 (140)
T ss_dssp             HHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHH
T ss_pred             CCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCcccccc
Confidence            4566899999999999999999999999999999999999999985 89999999999999999999999999999 999


Q ss_pred             eeeeeehhhhhhhhhhhcc
Q psy7487         420 SIDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       420 aiD~~~~~c~~~vf~~l~~  438 (439)
                      +||+|+.+|+.++|++++|
T Consensus       111 lI~~y~~~~~~~v~~sll~  129 (140)
T 2lkg_A          111 LIGKYMLFTKEFVESSIKI  129 (140)
T ss_dssp             HHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.69  E-value=3.5e-19  Score=153.66  Aligned_cols=95  Identities=21%  Similarity=0.314  Sum_probs=74.3

Q ss_pred             ecCCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------
Q psy7487         159 SLTTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------  227 (439)
Q Consensus       159 ~~~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------  227 (439)
                      ..++|+|+++++++++||+++||..++++||+++++++|++||+|+|+ |||+++|+|++|++++++..           
T Consensus         9 ~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~   87 (164)
T 2ksr_A            9 TSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLD   87 (164)
T ss_dssp             ----------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTT
T ss_pred             CCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCccc
Confidence            456789999999999999999999999999999999999999999998 89999999999999999886           


Q ss_pred             hhhhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         228 SFSIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       228 ~~~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                      +|+||+|+.+|++++++|++|+...+.
T Consensus        88 vPlI~~y~~~~m~~v~~sll~tv~Vl~  114 (164)
T 2ksr_A           88 VPLVGKYLMFTMVLVTFSIVTSVCVLN  114 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            399999999999999999999865544

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.67  E-value=3e-20  Score=182.42  Aligned_cols=119  Identities=45%  Similarity=0.858  Sum_probs=105.7

Q ss_pred             cccCCCeeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceee
Q psy7487         314 NAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL  393 (439)
Q Consensus       314 ~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l  393 (439)
                      ...+|++.....   ....|...   ...|.|+++...+.++|+.+||+++.|+|+.+++++||++||+++++.++|+++
T Consensus       175 ~~~~~e~~l~~~---~~~~~~~~---~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~l  248 (347)
T 3rhw_A          175 SSSLPSFQLTNT---STTYCTSV---TNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTL  248 (347)
T ss_dssp             GGGCCSEEEEEE---EEEECCEE---CSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHH
T ss_pred             eeEccceEEeeE---EeeEeeee---ecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEE
Confidence            456888876532   23334322   245779999999999999999999999999999999999999999998999999


Q ss_pred             eeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhcc
Q psy7487         394 GVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       394 ~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~  438 (439)
                      |+|++|+++++....+..+|++||+|+||+|+.+|++|+|++|+|
T Consensus       249 git~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle  293 (347)
T 3rhw_A          249 GVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLE  293 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=99.67  E-value=1.3e-19  Score=133.47  Aligned_cols=53  Identities=57%  Similarity=0.951  Sum_probs=51.1

Q ss_pred             CccceeeeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhccC
Q psy7487         387 TPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLGL  439 (439)
Q Consensus       387 ~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~~  439 (439)
                      .|||+++|+|++||++++.++.+.++|||||+||||+|+++|+.|||++|+|+
T Consensus         1 ~paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEy   53 (76)
T 1vry_A            1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEY   53 (76)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             CCceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999994

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=99.67  E-value=1.2e-20  Score=162.67  Aligned_cols=95  Identities=22%  Similarity=0.323  Sum_probs=81.3

Q ss_pred             cccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-cccee
Q psy7487         343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSI  421 (439)
Q Consensus       343 ~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kai  421 (439)
                      |.|+++...+.+|||.+||..|.|+||.+++++||++||+++++ ++|+++|+|++|+++++....++.+|++| |+++|
T Consensus        13 ~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~vPlI   91 (164)
T 2ksr_A           13 LGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDVPLV   91 (164)
T ss_dssp             ------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTHHHH
T ss_pred             CCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccCCHH
Confidence            56999999999999999999999999999999999999999987 89999999999999999999999999999 99999


Q ss_pred             eeeehhhhhhhhhhhcc
Q psy7487         422 DVYLGTCFVMVFASLLG  438 (439)
Q Consensus       422 D~~~~~c~~~vf~~l~~  438 (439)
                      |+|+.+|+.++|++++|
T Consensus        92 ~~y~~~~m~~v~~sll~  108 (164)
T 2ksr_A           92 GKYLMFTMVLVTFSIVT  108 (164)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999987

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A

Probab=99.63  E-value=3.6e-19  Score=149.46  Aligned_cols=93  Identities=13%  Similarity=0.094  Sum_probs=85.7

Q ss_pred             CCCceeeEEEEEEEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hh
Q psy7487         161 TTGNYSRLACEIQFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SF  229 (439)
Q Consensus       161 ~~~~~s~l~~~~~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~  229 (439)
                      ++|+|+++++++++||+++||.+++++|++++++++|++||+|+|+ +||+++|+|++|++++++..           +|
T Consensus        32 ~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vP  110 (140)
T 2lkg_A           32 EAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVP  110 (140)
T ss_dssp             HHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHH
T ss_pred             CCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCcccccc
Confidence            3466799999999999999999999999999999999999999996 89999999999999999886           39


Q ss_pred             hhhhhhhhHHHHHHHHHhhhhccce
Q psy7487         230 SIDVYLGTCFVMVFASLLGNYSRLA  254 (439)
Q Consensus       230 ~i~~~~~~~~~~v~~slle~~~~l~  254 (439)
                      +||+|+..|++++++|++|+...++
T Consensus       111 lI~~y~~~~~~~v~~sll~tv~Vln  135 (140)
T 2lkg_A          111 LIGKYMLFTKEFVESSIKITEEVIN  135 (140)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhee
Confidence            9999999999999999999865543

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.60  E-value=6.1e-20  Score=181.61  Aligned_cols=97  Identities=19%  Similarity=0.280  Sum_probs=94.2

Q ss_pred             ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487         342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS  420 (439)
Q Consensus       342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka  420 (439)
                      .|.|+++...++++|+.+||++|.|+|+.+++++||++||+++++.++|+++|+|++|+++++....+..+|++|| +++
T Consensus       195 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~  274 (370)
T 2bg9_E          195 DIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPL  274 (370)
T ss_dssp             CSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCCh
Confidence            4679999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             eeeeehhhhhhhhhhhcc
Q psy7487         421 IDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       421 iD~~~~~c~~~vf~~l~~  438 (439)
                      ||+|+.+|++|+|++++|
T Consensus       275 i~~~~~~~~~~v~~sll~  292 (370)
T 2bg9_E          275 IGKYLIFVMFVSLVIVTN  292 (370)
T ss_dssp             CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999987

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.58  E-value=1.1e-19  Score=179.70  Aligned_cols=95  Identities=19%  Similarity=0.390  Sum_probs=91.7

Q ss_pred             cccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-ccee
Q psy7487         343 GNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSI  421 (439)
Q Consensus       343 ~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~kai  421 (439)
                      |.|+++...++++|+.+||++|.|+|+.+++++||++||+++++ ++|+++|+|++|+++++....+..+|++|| +|+|
T Consensus       196 ~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i  274 (370)
T 2bg9_A          196 TPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLI  274 (370)
T ss_dssp             CCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             CCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHH
Confidence            56889999999999999999999999999999999999999987 799999999999999999999999999998 9999


Q ss_pred             eeeehhhhhhhhhhhcc
Q psy7487         422 DVYLGTCFVMVFASLLG  438 (439)
Q Consensus       422 D~~~~~c~~~vf~~l~~  438 (439)
                      |+|+.+|++|+|++++|
T Consensus       275 ~~~~~~~~~~v~~sl~~  291 (370)
T 2bg9_A          275 GKYMLFTMIFVISSIIV  291 (370)
T ss_dssp             GGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999987

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.58  E-value=1.4e-18  Score=168.84  Aligned_cols=120  Identities=21%  Similarity=0.296  Sum_probs=103.3

Q ss_pred             ccccCCCeeEeeeeeEEEeeeeEEeeeecccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCcccee
Q psy7487         313 TNAALPKVSYIKSIDVYLGTCFVMVFACLLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVA  392 (439)
Q Consensus       313 ~~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~  392 (439)
                      ....+|++.....   ....+.. .+..-.|.|+++...++++|+.+||++|.|+|+.+++++||++||  +++.++|++
T Consensus       157 ~~~~~~ew~l~~~---~~~~~~~-~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~--p~~~~~Rv~  230 (321)
T 3tlw_A          157 DDVFLTGWDIESF---TAVVKPA-NFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVT  230 (321)
T ss_dssp             TTCCBTTEEEEEE---EEEEEEE-EEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG--CCCHHHHHH
T ss_pred             ccccccceEEEee---EeEEeeE-EecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec--cCCCCCcEE
Confidence            4567888876532   1222221 123345779999999999999999999999999999999999999  677899999


Q ss_pred             eeeeeeEEEeeeccccccCCCCCcccceeeeeehhhhhhhhhhhcc
Q psy7487         393 LGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       393 l~~~~~lt~~~~~~~~~~~lp~vsy~kaiD~~~~~c~~~vf~~l~~  438 (439)
                      +|+|++|+++++....+..+|++||+|+||+|+.+|++|+|++++|
T Consensus       231 l~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~  276 (321)
T 3tlw_A          231 LVVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIE  276 (321)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.58  E-value=3.1e-19  Score=149.92  Aligned_cols=85  Identities=22%  Similarity=0.348  Sum_probs=80.7

Q ss_pred             HHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhh
Q psy7487         353 QFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVM  431 (439)
Q Consensus       353 ~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~  431 (439)
                      +++||.+||..|.|+||.+++++||++||+++|+ ++|+++|+|++|+++++....++.+|++| |+++||+|+.+|+.+
T Consensus         2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~   80 (137)
T 2lly_A            2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF   80 (137)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred             ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence            4789999999999999999999999999999987 79999999999999999999999999999 999999999999999


Q ss_pred             hhhhhcc
Q psy7487         432 VFASLLG  438 (439)
Q Consensus       432 vf~~l~~  438 (439)
                      +|++++|
T Consensus        81 v~~sl~~   87 (137)
T 2lly_A           81 VTLSIVI   87 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhh
Confidence            9999987

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.57  E-value=3.2e-19  Score=176.33  Aligned_cols=97  Identities=21%  Similarity=0.338  Sum_probs=93.4

Q ss_pred             cccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cc
Q psy7487         341 LLGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VK  419 (439)
Q Consensus       341 l~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~k  419 (439)
                      -.|.|+++...++++|+.+||++|.|+|+.+++++||++||++++ .++|+++|+|++|+++++....+..+|++|| ++
T Consensus       191 ~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp  269 (370)
T 2bg9_B          191 DDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSLSISALLALTVFLLLLADKVPETSLSVP  269 (370)
T ss_dssp             TSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEEEehHHHHHHHHHHHHHhhCCCcccccc
Confidence            357799999999999999999999999999999999999999999 8999999999999999999999999999998 99


Q ss_pred             eeeeeehhhhhhhhhhhcc
Q psy7487         420 SIDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       420 aiD~~~~~c~~~vf~~l~~  438 (439)
                      +||+|+.+|++|+|++++|
T Consensus       270 ~i~~~~~~~~~~v~~sll~  288 (370)
T 2bg9_B          270 IIISYLMFIMILVAFSVIL  288 (370)
T ss_dssp             CCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.56  E-value=1.4e-19  Score=178.82  Aligned_cols=96  Identities=20%  Similarity=0.341  Sum_probs=92.8

Q ss_pred             ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487         342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS  420 (439)
Q Consensus       342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka  420 (439)
                      .|.|+++...++++|+.+||++|.|+|+.+++++||++||++++ .++|+++|+|++|+++++....+..+|++|| +++
T Consensus       194 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~-~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~  272 (369)
T 2bg9_C          194 GTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPL  272 (369)
T ss_dssp             SCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCC-CCCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccH
Confidence            56799999999999999999999999999999999999999998 7999999999999999999999999999998 999


Q ss_pred             eeeeehhhhhhhhhhhcc
Q psy7487         421 IDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       421 iD~~~~~c~~~vf~~l~~  438 (439)
                      ||+|+.+|++|+|++++|
T Consensus       273 i~~~~~~~~~~v~~sll~  290 (369)
T 2bg9_C          273 IGKYLMFIMSLVTGVVVN  290 (369)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999986

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=99.51  E-value=1.6e-16  Score=133.31  Aligned_cols=83  Identities=24%  Similarity=0.348  Sum_probs=75.3

Q ss_pred             EEEeeeeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHH
Q psy7487         173 QFVRSMGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVM  241 (439)
Q Consensus       173 ~l~R~~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~  241 (439)
                      ++||+++||..++++||+++++++|++||+|+|+ +||+++|+|++|++++++..           +|+||+|+..|+++
T Consensus         2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~   80 (137)
T 2lly_A            2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF   80 (137)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred             ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence            5899999999999999999999999999999998 89999999999999999886           39999999999999


Q ss_pred             HHHHHhhhhccceee
Q psy7487         242 VFASLLGNYSRLACE  256 (439)
Q Consensus       242 v~~slle~~~~l~~~  256 (439)
                      +++|++|+...+..+
T Consensus        81 v~~sl~~tv~V~~~~   95 (137)
T 2lly_A           81 VTLSIVITVFVLNVH   95 (137)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHhhhhhhhhhHH
Confidence            999999986655443

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.51  E-value=2.2e-18  Score=167.51  Aligned_cols=95  Identities=32%  Similarity=0.584  Sum_probs=92.0

Q ss_pred             ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCccccee
Q psy7487         342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSI  421 (439)
Q Consensus       342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy~kai  421 (439)
                      .|.|+++...++++|+.+||.++.|+|+.+++++||++||++  +.++|+++|+|++|+++++....+..+|++||+++|
T Consensus       185 ~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp--~~~~Rv~l~it~lL~~~~~~~~~~~~lP~~s~vp~i  262 (322)
T 3rqw_A          185 QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE--SFSERLQTSFTLMLTVVAYAFYTSNILPRLPYTTVI  262 (322)
T ss_dssp             CCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS--SHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCCHH
T ss_pred             CCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC--CCCCcEEEEEehHHHHHHHHHHHhhhCCCccchHHH
Confidence            567999999999999999999999999999999999999999  789999999999999999999999999999999999


Q ss_pred             eeeehhhhhhhhhhhcc
Q psy7487         422 DVYLGTCFVMVFASLLG  438 (439)
Q Consensus       422 D~~~~~c~~~vf~~l~~  438 (439)
                      |+|+.+|++|+|++++|
T Consensus       263 ~~~~~~~~~~v~~sll~  279 (322)
T 3rqw_A          263 DQMIIAGYGSIFAAILL  279 (322)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999987

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.46  E-value=2.7e-17  Score=167.90  Aligned_cols=94  Identities=22%  Similarity=0.389  Sum_probs=90.8

Q ss_pred             ccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cceee
Q psy7487         344 NYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKSID  422 (439)
Q Consensus       344 ~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~kaiD  422 (439)
                      .|+++...+.++|+.+||++|.|+|+.+++++||++||+++++ ++|+++|+|++|+++++....+..+|++|| +++||
T Consensus       227 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~  305 (493)
T 4aq5_B          227 SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIII  305 (493)
T ss_dssp             SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCC
T ss_pred             CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchH
Confidence            5888999999999999999999999999999999999999995 899999999999999999999999999999 99999


Q ss_pred             eeehhhhhhhhhhhcc
Q psy7487         423 VYLGTCFVMVFASLLG  438 (439)
Q Consensus       423 ~~~~~c~~~vf~~l~~  438 (439)
                      +|+.+|++|+|++++|
T Consensus       306 ~y~~~~m~~v~lsll~  321 (493)
T 4aq5_B          306 SYLMFIMILVAFSVIL  321 (493)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999999986

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.44  E-value=8e-18  Score=170.28  Aligned_cols=95  Identities=19%  Similarity=0.394  Sum_probs=92.0

Q ss_pred             c-ccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccce
Q psy7487         343 G-NYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKS  420 (439)
Q Consensus       343 ~-~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~ka  420 (439)
                      | .|+++...+.++|+.+||++|.|+|+.+++++||++||+++++. +|+++|+|++|+++++....+..+|++| |+++
T Consensus       219 ~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~-eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vpl  297 (461)
T 4aq5_A          219 DTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPL  297 (461)
T ss_dssp             SCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEecccccc-ceeehhHHHHHHHHHHHHHHHhhcCcccCCcCH
Confidence            5 78999999999999999999999999999999999999999988 9999999999999999999999999999 9999


Q ss_pred             eeeeehhhhhhhhhhhcc
Q psy7487         421 IDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       421 iD~~~~~c~~~vf~~l~~  438 (439)
                      ||+|+.+|++|+|++++|
T Consensus       298 I~~y~~~~m~~v~~sll~  315 (461)
T 4aq5_A          298 IGKYMLFTMIFVISSIIV  315 (461)
T ss_dssp             CGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999987

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.42  E-value=1.5e-17  Score=169.50  Aligned_cols=97  Identities=19%  Similarity=0.280  Sum_probs=93.4

Q ss_pred             ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487         342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS  420 (439)
Q Consensus       342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka  420 (439)
                      .+.|+++...+.++|+.+||++|.|+||.+++++||++||+++++.++|+++|+|++|+++++...++..+|++|| +++
T Consensus       202 ~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPl  281 (488)
T 4aq5_E          202 DIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPL  281 (488)
T ss_dssp             CSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccH
Confidence            3459999999999999999999999999999999999999999999999999999999999999999999999998 999


Q ss_pred             eeeeehhhhhhhhhhhcc
Q psy7487         421 IDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       421 iD~~~~~c~~~vf~~l~~  438 (439)
                      ||+|+.+|++|++++++|
T Consensus       282 I~~y~~~~m~lv~~Sll~  299 (488)
T 4aq5_E          282 IGKYLIFVMFVSLVIVTN  299 (488)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999986

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.34  E-value=8.5e-17  Score=165.23  Aligned_cols=96  Identities=20%  Similarity=0.341  Sum_probs=92.1

Q ss_pred             ccccccchhhHHHHHhhcceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCcc-cce
Q psy7487         342 LGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISY-VKS  420 (439)
Q Consensus       342 ~~~~s~l~~~~~l~R~~~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vsy-~ka  420 (439)
                      .+.|+++...+.++|+.+||++|.|+|+.+++++||++||++++ .++|+++|+|++|+++++....+..+|++|| +++
T Consensus       230 ~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d-~~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPl  308 (522)
T 4aq5_C          230 GTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAE-SGEKMSTAICVLLAQAVFLLLTSQRLPETALAVPL  308 (522)
T ss_dssp             SCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred             CCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCC-cCceEEehHHHHHHHHHHHHHHHhcCCcccCCccH
Confidence            34599999999999999999999999999999999999999999 8999999999999999999999999999998 999


Q ss_pred             eeeeehhhhhhhhhhhcc
Q psy7487         421 IDVYLGTCFVMVFASLLG  438 (439)
Q Consensus       421 iD~~~~~c~~~vf~~l~~  438 (439)
                      ||+|+.+|+++++++++|
T Consensus       309 I~~y~~~~m~lv~lSll~  326 (522)
T 4aq5_C          309 IGKYLMFIMSLVTGVVVN  326 (522)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999986

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.25  E-value=6.9e-14  Score=129.95  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=72.2

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      +.||.+++++||+++++++|++||+|+++.++|+++|+|++|++++++.+           +|+||+|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl   80 (260)
T 1oed_E            1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999997799999999999999999886           3999999999999999999


Q ss_pred             hhhhccceee
Q psy7487         247 LGNYSRLACE  256 (439)
Q Consensus       247 le~~~~l~~~  256 (439)
                      +++...+..+
T Consensus        81 ~~tv~vln~~   90 (260)
T 1oed_E           81 MNCVIVLNVS   90 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHhheeeee
Confidence            9987665443

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.22  E-value=9e-14  Score=126.57  Aligned_cols=78  Identities=17%  Similarity=0.367  Sum_probs=71.2

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      |.||.+++++||+++++++|++||+|+++ ++|+++|+|++|++++++.+           +|+||.|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl   79 (227)
T 1oed_A            1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI   79 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999998 89999999999999999886           3999999999999999999


Q ss_pred             hhhhccceee
Q psy7487         247 LGNYSRLACE  256 (439)
Q Consensus       247 le~~~~l~~~  256 (439)
                      +++...+..+
T Consensus        80 ~~tv~vln~~   89 (227)
T 1oed_A           80 IITVVVINTH   89 (227)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhh
Confidence            9986655433

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.20  E-value=2e-13  Score=126.03  Aligned_cols=78  Identities=23%  Similarity=0.346  Sum_probs=71.3

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      +.||.+++++||+++++++|++||+|+++ ++|+++|+|++|++++++.+           +|+||.|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl   79 (250)
T 1oed_B            1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV   79 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999998 89999999999999999886           3999999999999999999


Q ss_pred             hhhhccceee
Q psy7487         247 LGNYSRLACE  256 (439)
Q Consensus       247 le~~~~l~~~  256 (439)
                      +++...+..+
T Consensus        80 ~~tv~Vln~~   89 (250)
T 1oed_B           80 ILSVVVLNLH   89 (250)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHhheeeee
Confidence            9986665433

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.18  E-value=2e-13  Score=126.80  Aligned_cols=79  Identities=18%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      +.||.+++++||+++++++|++||+|+++ ++|+++|+|++|++++++.+           +|+||.|+.+|++++++|+
T Consensus         1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~   79 (260)
T 1oed_C            1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999996 89999999999999999886           3999999999999999999


Q ss_pred             hhhhccceeeE
Q psy7487         247 LGNYSRLACEI  257 (439)
Q Consensus       247 le~~~~l~~~~  257 (439)
                      +++...+..+.
T Consensus        80 ~~tv~vl~~~~   90 (260)
T 1oed_C           80 VNCGIVLNFHF   90 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHheeeeec
Confidence            99866654443

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.10  E-value=1.1e-14  Score=132.68  Aligned_cols=79  Identities=20%  Similarity=0.429  Sum_probs=76.0

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||..+.|+||.+++++||++||+++++ ++|+++|+|++|+++.+....+..+|++| |+++||+|+.+|+++++++++
T Consensus         2 l~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~   80 (227)
T 1oed_A            2 LYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII   80 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             eEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987 89999999999999999999999999999 999999999999999999987


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      |
T Consensus        81 ~   81 (227)
T 1oed_A           81 I   81 (227)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.10  E-value=1.8e-14  Score=133.80  Aligned_cols=80  Identities=21%  Similarity=0.345  Sum_probs=77.1

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||..+.|+||.+++++||++||+++++.++|+++|+|++|+++.+....+..+|++| |+++||+|+.+|+++++++++
T Consensus         2 l~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl~   81 (260)
T 1oed_E            2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVM   81 (260)
T ss_dssp             CSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             eEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999998899999999999999999999999999999 999999999999999999987


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      +
T Consensus        82 ~   82 (260)
T 1oed_E           82 N   82 (260)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=99.06  E-value=1.9e-14  Score=106.01  Aligned_cols=60  Identities=48%  Similarity=0.768  Sum_probs=54.6

Q ss_pred             cceeeecceeeEEEEEEeeccccccCCCeeEeeeeeEEEeeeeEEeeeecccc--cccchhh
Q psy7487         292 TVARVNLGVTTVLTMTTLMSSTNAALPKVSYIKSIDVYLGTCFVMVFACLLGN--YSRLACE  351 (439)
Q Consensus       292 ~~~r~~l~~~~~lt~~~~~~~~~~~LP~~~y~~~~d~~~~~c~~~~~~~l~~~--~s~l~~~  351 (439)
                      +|+|+.||+|++||++++..+.+.+|||++|+|++|+|++.|+.|+|++++|+  ++++..+
T Consensus         1 ~paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~   62 (76)
T 1vry_A            1 LPARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRK   62 (76)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred             CCceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999999999999999999999999999999999999  6655433

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.05  E-value=2.7e-14  Score=131.89  Aligned_cols=79  Identities=25%  Similarity=0.405  Sum_probs=76.0

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||..+.|+||.+++++||++||+++++ ++|+++|+|++|+++.+....+..+|++| |+++||+|+.+|+++++++++
T Consensus         2 l~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl~   80 (250)
T 1oed_B            2 LFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVI   80 (250)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred             eEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987 79999999999999999999999999999 999999999999999999987


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      |
T Consensus        81 ~   81 (250)
T 1oed_B           81 L   81 (250)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=98.78  E-value=1.1e-12  Score=121.95  Aligned_cols=79  Identities=20%  Similarity=0.388  Sum_probs=75.3

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||..+.++||.+++++||++||++++ .++|+++|+|++|+++.+...++..+|+.| |++.||+|+.+|+++++++++
T Consensus         2 l~Y~~nliiP~~li~~ls~~~F~Lp~~-~gekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~~   80 (260)
T 1oed_C            2 LFYVINFITPCVLISFLASLAFYLPAE-SGEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV   80 (260)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             eEEEEhHHHHHHHHHHHHHHHeeeCCC-CCCeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999998 579999999999999999999999999999 999999999999999999987


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      +
T Consensus        81 ~   81 (260)
T 1oed_C           81 N   81 (260)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=97.08  E-value=1.2e-05  Score=47.38  Aligned_cols=28  Identities=68%  Similarity=0.914  Sum_probs=26.2

Q ss_pred             CccceeeeeeeeEEEeeeccccccCCCC
Q psy7487         387 TPARVALGVTTVLTMTTLMSSTNAALPK  414 (439)
Q Consensus       387 ~~~r~~l~~~~~lt~~~~~~~~~~~lp~  414 (439)
                      .|||+++|++++|+++++..+.+.++||
T Consensus         1 ~paRv~LGittvLt~tt~~~~~~~~lPk   28 (28)
T 1mot_A            1 APARVGLGITTVLTMTTQSSGSRASLPK   28 (28)
T ss_dssp             CCHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred             CCceEEEcchhHHHHHHHHhhHhhhCCC
Confidence            4899999999999999999999999996

>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1

Probab=96.31  E-value=6.4e-05  Score=44.19  Aligned_cols=28  Identities=64%  Similarity=0.801  Sum_probs=26.2

Q ss_pred             cceeeecceeeEEEEEEeeccccccCCC
Q psy7487         292 TVARVNLGVTTVLTMTTLMSSTNAALPK  319 (439)
Q Consensus       292 ~~~r~~l~~~~~lt~~~~~~~~~~~LP~  319 (439)
                      +|+|+.+|++++||++++..+.+.++||
T Consensus         1 ~paRv~LGittvLt~tt~~~~~~~~lPk   28 (28)
T 1mot_A            1 APARVGLGITTVLTMTTQSSGSRASLPK   28 (28)
T ss_dssp             CCHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred             CCceEEEcchhHHHHHHHHhhHhhhCCC
Confidence            4899999999999999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	439
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	4e-18
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	5e-18
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	8e-17
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	1e-12
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	3e-16
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	2e-15
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	1e-10
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	4e-16
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	4e-15
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	2e-11
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	9e-16
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	7e-15
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	4e-11

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 80.2 bits (197), Expect = 4e-18
 Identities = 30/178 (16%), Positives = 66/178 (37%), Gaps = 10/178 (5%)

Query: 1   RLESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVN 60
           +  ++L++   + +  + F+ +  W+D  LA+      + +SV      ++WVPD    N
Sbjct: 35  KFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPIS---SLWVPDLAAYN 91

Query: 61  EKQSYFHIATTSNEFIRIHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYT 120
                      + +  R+   G +     +    SC ++          C I+I S+ + 
Sbjct: 92  AISKPEV---LTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHH 147

Query: 121 MRDIRYKWNEGPNSVGVSNEVSLPQFKVLG--HRQKDLEISLTTGNYSRLACEIQFVR 176
            R+I        NS          +F++L    ++  +  S     Y  +   + F +
Sbjct: 148 SREISVDP-TTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 81.0 bits (199), Expect = 5e-18
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y+I I  P  LI  +  + ++L   A   +  L ++ +L  T  +      +P+ S  V
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL     +    ++
Sbjct: 63  PLIGKYLIFVMFVSMLIVM 81

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 77.6 bits (190), Expect = 8e-17
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           +Y+I I  P +LI ++  + ++L   A   +  L ++ +L  T  +      +P+ S  +
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 324 KSIDVYLGTCFVMVFACLLGNY 345
             I  YL     +    ++   
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCV 84

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
           +Y+I I  P  LI ++  + ++L   A   +  L ++ +L  T    L            
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 231 --IDVYLGTCFVMVFASLLGNY 250
             I  YL     +    ++   
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCV 84

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 75.2 bits (184), Expect = 3e-16
 Identities = 16/79 (20%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L++T  +      +P  S  V
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  Y+    + V +S++
Sbjct: 62  PLIGKYMLFTMIFVISSII 80

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 73.2 bits (179), Expect = 2e-15
 Identities = 13/82 (15%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           Y+++ + +P +L   ++ + F+L   +   ++ L ++ +L++T  +      +P  S  +
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 324 KSIDVYLGTCFVMVFACLLGNY 345
             I  Y+    + V + ++   
Sbjct: 62  PLIGKYMLFTMIFVISSIIITV 83

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 58.6 bits (141), Expect = 1e-10
 Identities = 12/82 (14%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFSI-------- 231
           Y+++ + IP  L   ++ + F+L  ++   ++ L ++ +L++T   ++   +        
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 232 ---DVYLGTCFVMVFASLLGNY 250
                Y+    + V +S++   
Sbjct: 62  PLIGKYMLFTMIFVISSIIITV 83

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 75.6 bits (185), Expect = 4e-16
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y++   IP  LI I++ + F+L  +A   +++L ++ +L +T  +      +P+ S  V
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL    ++V  S++
Sbjct: 62  PIIIRYLMFIMILVAFSVI 80

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 72.5 bits (177), Expect = 4e-15
 Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           +Y++   +P ILI  ++ + F+L   A   +++L ++ +L +T  +      +P+ S  +
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDAG-EKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 324 KSIDVYLGTCFVMVFACLL 342
             I  YL    ++V   ++
Sbjct: 62  PIIIRYLMFIMILVAFSVI 80

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 16/115 (13%), Positives = 47/115 (40%), Gaps = 17/115 (14%)

Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLS----------- 228
           +Y++   IP  LI  ++ + F+L  +A   +++L ++ +L +T   +L            
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 229 -----FSIDVYLGTCFVMVFASLLGNYSRLACEIQFVRSMGYYLIQIYVPSILIV 278
                + + + +   F ++ + ++ N    +     + +    +    +P  L +
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWI 116

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 74.8 bits (183), Expect = 9e-16
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 360 YYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YV 418
           +Y+I    P  LI  ++ ++F+L   +   +++  ++ +L     +  T+  LP+ +  V
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 419 KSIDVYLGTCFVMVFASLL 437
             I  YL     +V   ++
Sbjct: 62  PLIGKYLMFIMSLVTGVIV 80

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 72.1 bits (176), Expect = 7e-15
 Identities = 15/79 (18%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 265 YYLIQIYVPSILIVAISWVSFWLNRVATVARVNLGVTTVLTMTTLMSSTNAALPKVS-YI 323
           +Y+I    P +LI  ++ ++F+L   +   +++  ++ +L     +  T+  LP+ +  +
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAESG-EKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 324 KSIDVYLGTCFVMVFACLL 342
             I  YL     +V   ++
Sbjct: 62  PLIGKYLMFIMSLVTGVIV 80

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 61.0 bits (147), Expect = 4e-11
 Identities = 17/115 (14%), Positives = 42/115 (36%), Gaps = 17/115 (14%)

Query: 180 YYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVLSFS--------- 230
           +Y+I    P  LI  ++ ++F+L   +   +++  ++ +L      +L+           
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 231 --IDVYLGTCFVMVFASLL-----GNYSRLACEIQFVRSMGYYLIQIYVPSILIV 278
             I  YL     +V   ++      N+         + +    +    +P IL +
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHM 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	439
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	100.0
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.36
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	99.33
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.25
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.24
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.19
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	99.15
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	98.9
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	98.8

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=100.00  E-value=2.4e-34  Score=259.51  Aligned_cols=170  Identities=18%  Similarity=0.271  Sum_probs=146.0

Q ss_pred             ccccccccccceeEEEEEEEEeEEeCcccccCCCCCeeEEEeCCcccCCccccceEEeeccccceeeeeccceeEEEeec
Q psy7487           2 LESVLKLKFRSEDFTLDFYFRQFWTDPRLAFRQRPGVETLSVGSDFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIHHS   81 (439)
Q Consensus         2 l~~i~~vde~~~~~t~~~~l~~~W~D~RL~w~~~~~i~~i~l~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~v~i~~~   81 (439)
                      |.+|.++||++|++++++|++|+|+||||+|||.++.+.+.++.+   +||+||+++.|+.+....   ..+..++|++|
T Consensus        36 l~~i~~vde~~q~~~~~~~~~~~W~D~rL~Wnp~~~~~~~~v~~~---~iW~PDi~l~n~~~~~~~---~~~~~~~v~~~  109 (208)
T d1uw6a_          36 FINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVSVPIS---SLWVPDLAAYNAISKPEV---LTPQLARVVSD  109 (208)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEEEEEGG---GSCCCCEEETTBCSCCEE---CSCCEEEEETT
T ss_pred             EEeEeeecccCCEEEEEEEEEEEEECCccccccccCCceeccchh---ccccccEEEEEEcccccc---ccceEEEEEeC
Confidence            578999999999999999999999999999999765567888887   899999999999876532   23455899999


Q ss_pred             ceEEEeeeceeEEeeceeeccCCcceeeeeeEEeccccccceEEEEecCCCCceeecCccccCceEEeeeEEeeeEe--e
Q psy7487          82 GSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSNEVSLPQFKVLGHRQKDLEI--S  159 (439)
Q Consensus        82 G~V~~~~r~~~~~~C~~dl~~fPfD~Q~C~l~~~S~~y~~~~v~l~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~--~  159 (439)
                      |+|.|..+.+.++.|+|++..|| |+|+|+++|+||+|+.+++.+.+..++ ....+....++||++.+.+..+...  .
T Consensus       110 G~V~~~~~~~~~~~C~~~~~~f~-d~Q~C~l~fgSw~y~~~~i~l~~~~~~-~~~~~~~~~~~eW~l~~~~~~~~~~~y~  187 (208)
T d1uw6a_         110 GEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTEN-SDDSEYFSQYSRFEILDVTQKKNSVTYS  187 (208)
T ss_dssp             SEEEECCEEEEEEECCCTTTTSS-SCEEEEEEEEESSCCTTTEEEEECCCS-SCTTTTSCTTSSEEEEEEEEEEEEEECT
T ss_pred             CcEEEEecEEEEEeccccccCCc-ceEEEEEEEeCceeccceEEEeeccCC-CccccccccCCCEEEEEeEEEEEEEEeC
Confidence            99999999999999999988888 899999999999999999999987643 2333445678999999998876654  4


Q ss_pred             cCCCceeeEEEEEEEEeeee
Q psy7487         160 LTTGNYSRLACEIQFVRSMG  179 (439)
Q Consensus       160 ~~~~~~s~l~~~~~l~R~~~  179 (439)
                      +++++|+.+.++++||||+.
T Consensus       188 cc~~~y~~i~~~i~lrRr~~  207 (208)
T d1uw6a_         188 CCPEAYEDVEVSLNFRKKGR  207 (208)
T ss_dssp             TCSSEEEEEEEEEEEEECCC
T ss_pred             CCCCCcceEEEEEEEEECCC
Confidence            55899999999999999974

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.36  E-value=5.3e-15  Score=136.97  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=72.9

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      |.||++++++||+++++++|++||+|+++.|+|+++|+|+||+|++++.+           +|+||+|+++|++++++|+
T Consensus         1 PlyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl   80 (260)
T d1oede_           1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV   80 (260)
T ss_dssp             CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred             CcEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999899999999999999999987           3899999999999999999


Q ss_pred             hhhhccceee
Q psy7487         247 LGNYSRLACE  256 (439)
Q Consensus       247 le~~~~l~~~  256 (439)
                      +++.-.+..+
T Consensus        81 ~~t~iVl~~~   90 (260)
T d1oede_          81 MNCVIVLNVS   90 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHheeeEE
Confidence            9986665443

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.33  E-value=1.3e-16  Score=148.12  Aligned_cols=80  Identities=21%  Similarity=0.345  Sum_probs=77.5

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||+.+.|+||.+++++||++||+++++.++|+++|+|++|+++++...++..+|++| |+++||+|+.+|+++++++++
T Consensus         2 lyY~~~lilP~~li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~~~v~~~lP~tS~~vPli~~~~~~~~~~v~~sl~   81 (260)
T d1oede_           2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVM   81 (260)
T ss_dssp             CSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred             cEEEEhHHHHHHHHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999999999998 999999999999999999998


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      |
T Consensus        82 ~   82 (260)
T d1oede_          82 N   82 (260)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.25  E-value=2.2e-14  Score=132.67  Aligned_cols=79  Identities=18%  Similarity=0.284  Sum_probs=72.5

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      |.||++++++||+++++++|++||+|+|+ |+|+++|+|++|+|++++.+           +|+||+|+++|++++++|+
T Consensus         1 pl~y~~n~~~P~~~~~~l~~~~f~lp~~~-~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~   79 (260)
T d1oedc_           1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI   79 (260)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CceEEEhHHHHHHHHHHHHHHHeeeCCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999998 89999999999999999987           3899999999999999999


Q ss_pred             hhhhccceeeE
Q psy7487         247 LGNYSRLACEI  257 (439)
Q Consensus       247 le~~~~l~~~~  257 (439)
                      +++.-.+..+.
T Consensus        80 ~~t~~Vl~~~~   90 (260)
T d1oedc_          80 VNCGIVLNFHF   90 (260)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHhheeeee
Confidence            99866655543

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.24  E-value=2.9e-14  Score=129.18  Aligned_cols=77  Identities=17%  Similarity=0.370  Sum_probs=70.9

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      |.||+.++++||+++++++|++||+|+|+ |||+++|+|++|++++++.+           +|+|++|++.|++++++|+
T Consensus         1 plyy~~~li~P~~li~~ls~~~F~lp~~s-~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sl   79 (227)
T d1oeda_           1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI   79 (227)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred             CcEEEehHHHHHHHHHHHHHHHheecCCC-CccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHH
Confidence            67999999999999999999999999998 89999999999999999986           3899999999999999999


Q ss_pred             hhhhcccee
Q psy7487         247 LGNYSRLAC  255 (439)
Q Consensus       247 le~~~~l~~  255 (439)
                      +++.-.+..
T Consensus        80 i~tiiV~~l   88 (227)
T d1oeda_          80 IITVVVINT   88 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhe
Confidence            998555433

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.19  E-value=6.2e-14  Score=128.87  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=71.9

Q ss_pred             eeEEEEeeehhhHHHHhhheeeeeecCCCCCceEEEEeehhHHHHhhhhh-----------hhhhhhhhhhHHHHHHHHH
Q psy7487         178 MGYYLIQIYIPSSLIVAISWVSFWLNRNATPARVALGVTTVLTMTTLQVL-----------SFSIDVYLGTCFVMVFASL  246 (439)
Q Consensus       178 ~~~y~~~i~lP~~li~~ls~~~F~l~~~~~~~ri~l~it~lL~~~~~~~~-----------~~~i~~~~~~~~~~v~~sl  246 (439)
                      |.||++++++||+++++++|++||+|+++ |+|+++|+|++|++++++.+           +|+||.|+++|++++++|+
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~-~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~   79 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV   79 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999998 89999999999999999987           3899999999999999999


Q ss_pred             hhhhccceeeE-----EEEeecceeEEEEee
Q psy7487         247 LGNYSRLACEI-----QFVRSMGYYLIQIYV  272 (439)
Q Consensus       247 le~~~~l~~~~-----~~~~~~~~~l~~~~~  272 (439)
                      +++.-.+..+.     +-.|++.++++..++
T Consensus        80 ~~~~~v~~~~~~~~~~~p~P~wvR~lfL~~l  110 (250)
T d1oedb_          80 ILSVVVLNLHHRSPNTHTMPNWIRQIFIETL  110 (250)
T ss_dssp             HHHHHHHHHHHTC------------------
T ss_pred             HHHHhheeeeccCcccCCcchHHHHHHHHhh
Confidence            99866555433     234555555443333

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.15  E-value=2.5e-15  Score=136.30  Aligned_cols=79  Identities=20%  Similarity=0.429  Sum_probs=75.8

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||+.+.++||.+++++||++||+++++ ++|+++|+|++|+++++...++..+|++| |+++||+|+++|+++++++++
T Consensus         2 lyy~~~li~P~~li~~ls~~~F~lp~~s-~eRi~l~it~lL~~~v~~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~sli   80 (227)
T d1oeda_           2 LYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSII   80 (227)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             cEEEehHHHHHHHHHHHHHHHheecCCC-CccEEeeHHHHHHHHHHHHHHHHhCCCcccCcCccchHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987 89999999999999999999999999999 899999999999999999987


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      +
T Consensus        81 ~   81 (227)
T d1oeda_          81 I   81 (227)
T ss_dssp             H
T ss_pred             H
Confidence            6

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.90  E-value=1.2e-13  Score=127.49  Aligned_cols=79  Identities=20%  Similarity=0.386  Sum_probs=75.5

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||..+.++||.+++++||++||+++++ ++|+++|+|++|+++.+...++..+|++| +++.||+|..+|+++++++++
T Consensus         2 l~y~~n~~~P~~~~~~l~~~~f~lp~~~-~~r~~l~it~lLs~~vf~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s~~   80 (260)
T d1oedc_           2 LFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVIV   80 (260)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred             ceEEEhHHHHHHHHHHHHHHHeeeCCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987 79999999999999999999999999998 999999999999999999987


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      +
T Consensus        81 ~   81 (260)
T d1oedc_          81 N   81 (260)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.80  E-value=4.8e-13  Score=122.77  Aligned_cols=79  Identities=25%  Similarity=0.405  Sum_probs=75.1

Q ss_pred             cceeeeeeecceeEEEEEeeeeeeeCCCCccceeeeeeeeEEEeeeccccccCCCCCc-ccceeeeeehhhhhhhhhhhc
Q psy7487         359 GYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS-YVKSIDVYLGTCFVMVFASLL  437 (439)
Q Consensus       359 ~~~~~~~~~p~~l~v~~sw~~fw~~~~~~~~r~~l~~~~~lt~~~~~~~~~~~lp~vs-y~kaiD~~~~~c~~~vf~~l~  437 (439)
                      .||..+.++||.+++++||++||+++++ ++|+++|+|++|+++.+...++..+|+.| +++.||+|..+|+.+++++++
T Consensus         2 l~y~~~~~~P~~~i~~l~~~~f~~p~~~-~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~   80 (250)
T d1oedb_           2 LFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVI   80 (250)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred             cEEEEeHHHHHHHHHHHHHHHheecCCC-CCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999987 78999999999999999999999999998 899999999999999999886


Q ss_pred             c
Q psy7487         438 G  438 (439)
Q Consensus       438 ~  438 (439)
                      +
T Consensus        81 ~   81 (250)
T d1oedb_          81 L   81 (250)
T ss_dssp             H
T ss_pred             H
Confidence            4