Psyllid ID: psy7502

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MRLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPLSPSFIGW
Secondary Structure (PSIPRED)
cEEEEccccccccHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHccccHHHHHHHHHHHccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccHHHHHHHHHHHHHccccccccHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHcccEEEEccccccccEccc
Coil and Loop (DISEMBL)
mrltygenatrytEEELTSQFMKILesqpsqvnpvgilttqrrDMWAESWDILQKDEQNRANLDLIEKSLITIcldsvplspsfigw
Flexible Loop (DISEMBL)
mrltygenatryteEELTSQFMKILesqpsqvnpvGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLIticldsvplspsfigw
Low Complexity Region (SEG)
MRLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPLSPSFIGW
Disordered region (IsUnstruct)
********************************NPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPL*******
Disordered Region (DISOPRED)
MRLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPLS******
Disordered Region (DISEMBL)
MRLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPLSPSFIGW
Disordered Region (DISPRO)
MRLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPLSPSFIGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLTYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVPLSPSFIGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
P07668	721	Choline O-acetyltransfera	yes	N/A	0.839	0.101	0.389	4e-09
Q90YJ9	640	Choline O-acetyltransfera	yes	N/A	0.862	0.117	0.410	4e-09
P47934	626	Carnitine O-acetyltransfe	yes	N/A	0.827	0.115	0.397	2e-08
P28329	748	Choline O-acetyltransfera	yes	N/A	0.804	0.093	0.369	3e-08
Q704S8	626	Carnitine O-acetyltransfe	yes	N/A	0.827	0.115	0.397	3e-08
P13222	641	Choline O-acetyltransfera	no	N/A	0.804	0.109	0.369	6e-08
P43155	626	Carnitine O-acetyltransfe	no	N/A	0.839	0.116	0.378	7e-08
P52826	627	Carnitine O-acetyltransfe	N/A	N/A	0.850	0.118	0.4	9e-08
B2ZGJ1	637	Choline O-acetyltransfera	no	N/A	0.747	0.102	0.407	1e-07
Q03059	641	Choline O-acetyltransfera	no	N/A	0.804	0.109	0.356	2e-07

>sp|P07668|CLAT_DROME Choline O-acetyltransferase OS=Drosophila melanogaster GN=Cha PE=1 SV=3

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 50/77 (64%), Gaps = 4/77 (5%)

Query: 11  RYTEEELTSQFMKILESQP---SQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIE 67
           + +E E+ SQ + +L   P   ++  PVG+LT + R  WA   ++LQ+DE+N+ NL+LIE
Sbjct: 282 KLSESEIASQILYVLSDAPCLPAKPVPVGLLTAEPRSTWARDREMLQEDERNQRNLELIE 341

Query: 68  KSLITICLDSVPLSPSF 84
            + + +CLD  PL+ +F
Sbjct: 342 TAQVVLCLDE-PLAGNF 357

Catalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 6

>sp|Q90YJ9|CLAT_CHICK Choline O-acetyltransferase OS=Gallus gallus GN=CHAT PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 3/78 (3%)

Query: 3   LTYGENATRYTEEELTSQFMKIL---ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQN 59
           L  G N  R +E +L +Q  KI    E++   + P+G+LTT  R  WAE+  IL KD  N
Sbjct: 207 LDVGINFRRLSEGDLFTQLRKIAKMAENEEEMLPPIGLLTTDGRTEWAEARTILMKDSTN 266

Query: 60  RANLDLIEKSLITICLDS 77
           R +LD+IE+ +  +CLD 
Sbjct: 267 RDSLDMIERCICLVCLDG 284

Catalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|P47934|CACP_MOUSE Carnitine O-acetyltransferase OS=Mus musculus GN=Crat PE=1 SV=3

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)

Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 217 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 276

Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 277 NSIQKSIFTVCLD 289

Carnitine acetylase is specific for short chain fatty acids. Carnitine acetylase seems to affect the flux through the pyruvate dehydrogenase complex. It may be involved as well in the transport of acetyl-CoA into mitochondria.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

>sp|P28329|CLAT_HUMAN Choline O-acetyltransferase OS=Homo sapiens GN=CHAT PE=1 SV=4

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)

Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WAE+  +L KD  NR +LD
Sbjct: 320 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLD 379

Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD+
Sbjct: 380 MIERCICLVCLDA 392

Catalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q704S8|CACP_RAT Carnitine O-acetyltransferase OS=Rattus norvegicus GN=Crat PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA+++  L KD+ NR ++
Sbjct: 217 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNSWAKAYSSLIKDKVNRESV 276

Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 277 NSIQKSIFTVCLD 289

Carnitine acetylase is specific for short chain fatty acids. Carnitine acetylase seems to affect the flux through the pyruvate dehydrogenase complex. It may be involved as well in the transport of acetyl-CoA into mitochondria.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

>sp|P13222|CLAT_PIG Choline O-acetyltransferase OS=Sus scrofa GN=CHAT PE=1 SV=3

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI+    ++  ++ P+G+LT+  R  WAE+  +L KD  NR +LD
Sbjct: 213 NFRRLSEGDLFTQLRKIVRMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLD 272

Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD+
Sbjct: 273 MIERCICLVCLDA 285

Catalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|P43155|CACP_HUMAN Carnitine O-acetyltransferase OS=Homo sapiens GN=CRAT PE=1 SV=5

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   +   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 217 YHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSV 276

Query: 64  DLIEKSLITICLDS 77
             I+KS+ T+CLD+
Sbjct: 277 RSIQKSIFTVCLDA 290

Carnitine acetylase is specific for short chain fatty acids. Carnitine acetylase seems to affect the flux through the pyruvate dehydrogenase complex. It may be involved as well in the transport of acetyl-CoA into mitochondria.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

>sp|P52826|CACP_COLLI Carnitine O-acetyltransferase OS=Columba livia GN=CRAT PE=1 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 4   TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
            Y  + +  T ++L  Q  KI   S  +   PVGILTT  R+ WA++++ L KD+ N+ +
Sbjct: 217 VYNSDGSPLTTDQLFIQLEKIWNTSLQTNKEPVGILTTNHRNSWAKAYNNLLKDKTNKES 276

Query: 63  LDLIEKSLITICLDS 77
           +  IEKS+ TICLD+
Sbjct: 277 VRTIEKSICTICLDA 291

Carnitine acetylase is specific for short chain fatty acids. Carnitine acetylase seems to affect the flux through the pyruvate dehydrogenase complex. It may be involved as well in the transport of acetyl-CoA out of the mitochondria for fatty acid biosynthesis or urinary excretion.

Columba livia (taxid: 8932)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 7

>sp|B2ZGJ1|CLAT_DANRE Choline O-acetyltransferase OS=Danio rerio GN=chat PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 11/76 (14%)

Query: 8   NATRYTEEELTSQFMKIL-------ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNR 60
           N  R  E++L +Q  +I        E QP    P+G+LT+  R  WAE+ +IL KD  NR
Sbjct: 207 NFRRLNEKDLYTQLERIRKMADIEEERQP----PIGLLTSDGRTQWAEARNILIKDSTNR 262

Query: 61  ANLDLIEKSLITICLD 76
            +LD+IE+ L  +CLD
Sbjct: 263 DSLDMIERCLCLVCLD 278

Catalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q03059|CLAT_MOUSE Choline O-acetyltransferase OS=Mus musculus GN=Chat PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WA++  +L KD  NR +LD
Sbjct: 213 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 272

Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD 
Sbjct: 273 MIERCICLVCLDG 285

Catalyzes the reversible synthesis of acetylcholine (ACh) from acetyl CoA and choline at cholinergic synapses.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
195093879	440	GH23211 [Drosophila grimshawi] gi|193905	0.839	0.165	0.428	1e-09
380018346	826	PREDICTED: choline O-acetyltransferase-l	0.850	0.089	0.453	1e-09
328784397	676	PREDICTED: choline O-acetyltransferase-l	0.850	0.109	0.453	1e-09
328723269	777	PREDICTED: choline O-acetyltransferase-l	0.965	0.108	0.426	2e-09
307178984	614	Choline O-acetyltransferase [Camponotus	0.850	0.120	0.44	2e-09
345494307	670	PREDICTED: choline O-acetyltransferase-l	0.850	0.110	0.453	2e-09
307193262	562	Choline O-acetyltransferase [Harpegnatho	0.850	0.131	0.44	3e-09
156393410	597	predicted protein [Nematostella vectensi	0.896	0.130	0.354	4e-09
332028560	560	Choline O-acetyltransferase [Acromyrmex	0.850	0.132	0.426	4e-09
195072096	575	GH13910 [Drosophila grimshawi] gi|193906	0.839	0.126	0.415	4e-09

>gi|195093879|ref|XP_001997762.1| GH23211 [Drosophila grimshawi] gi|193905752|gb|EDW04619.1| GH23211 [Drosophila grimshawi]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 11  RYTEEELTSQFMKILESQP---SQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIE 67
           + +E E+ SQ + +L   P   ++  PVG+LT + R  WA+  D LQ DE+NR NL+LIE
Sbjct: 127 KLSESEIASQILYVLSDAPCLPAKPAPVGLLTAEPRSQWAQDRDALQWDERNRRNLELIE 186

Query: 68  KSLITICLDSVPLSPSF 84
            +L+ +CLD  PL  +F
Sbjct: 187 TALVVLCLDE-PLGVNF 202

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018346|ref|XP_003693092.1| PREDICTED: choline O-acetyltransferase-like [Apis florea]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 11  RYTEEELTSQFMKILESQPS-QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKS 69
           R TE EL  Q +KI+E++   +  PVGILTT +R  WA++ + L K EQNR NL+L+E+ 
Sbjct: 388 RITETELAQQILKIMETKADPRTPPVGILTTMKRPAWAKAREELLKHEQNRHNLELLERC 447

Query: 70  LITICLDSVPLSPSF 84
           L  +C+D   L  +F
Sbjct: 448 LCVVCIDDDILPATF 462

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784397|ref|XP_392463.3| PREDICTED: choline O-acetyltransferase-like [Apis mellifera]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 11  RYTEEELTSQFMKILESQPS-QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKS 69
           R TE EL  Q +KI+E++   +  PVGILTT +R  WA++ + L K EQNR NL+L+E+ 
Sbjct: 240 RITETELAQQILKIMETKADPRTPPVGILTTMKRPAWAKAREELLKHEQNRHNLELLERC 299

Query: 70  LITICLDSVPLSPSF 84
           L  +C+D   L  +F
Sbjct: 300 LCVVCIDDDILPATF 314

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328723269|ref|XP_001946601.2| PREDICTED: choline O-acetyltransferase-like [Acyrthosiphon pisum]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 5/89 (5%)

Query: 1   MRLTYGENATRYTEEELTSQFMKIL-----ESQPSQVNPVGILTTQRRDMWAESWDILQK 55
           +RLT GE+AT  TEEE+ ++ + I+      +  +    VGILT+Q+RD WA S ++L K
Sbjct: 333 LRLTSGEDATPITEEEIVTKLLNIIMDAKKTAGTAGTYSVGILTSQKRDDWAHSRELLMK 392

Query: 56  DEQNRANLDLIEKSLITICLDSVPLSPSF 84
              NR NL LIE+ L  I  D  PL   F
Sbjct: 393 SASNRNNLALIERCLFFINYDLEPLGLEF 421

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178984|gb|EFN67500.1| Choline O-acetyltransferase [Camponotus floridanus]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 11  RYTEEELTSQFMKILESQPS-QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKS 69
           R TE EL  Q +KI+E++   +  PVGILTT +R  WA++ + L K+E+NR NL+L+E+ 
Sbjct: 123 RITEVELVQQLLKIMETKADPRTPPVGILTTAKRPAWAKAREELIKNERNRHNLELLERC 182

Query: 70  LITICLDSVPLSPSF 84
           L  +C+D   L  +F
Sbjct: 183 LCVVCIDDDVLPTTF 197

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494307|ref|XP_001605246.2| PREDICTED: choline O-acetyltransferase-like [Nasonia vitripennis]

 Score = 66.2 bits (160), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 11  RYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKS 69
           R TE EL  QF+KI+E    ++  PVGILTT +R +WA + + L K+E NR N++LIE+ 
Sbjct: 240 RITESELVEQFLKIMEVPADAKTLPVGILTTAKRPVWANAREELLKNENNRHNVELIERC 299

Query: 70  LITICLDSVPLSPSF 84
           L  +C+D   L  +F
Sbjct: 300 LCLVCIDDDVLPTTF 314

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193262|gb|EFN76153.1| Choline O-acetyltransferase [Harpegnathos saltator]

 Score = 66.2 bits (160), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 11  RYTEEELTSQFMKILESQPS-QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKS 69
           R TE EL  Q + I+E++   +  PVGILTT +R +WA++ + L K+E NR NL+L+E+S
Sbjct: 123 RITEAELVQQLLMIMETKADPRTPPVGILTTAKRPVWAKAREELIKNEGNRHNLELLERS 182

Query: 70  LITICLDSVPLSPSF 84
           L  +C+D   L  +F
Sbjct: 183 LCIVCIDDDVLPTTF 197

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156393410|ref|XP_001636321.1| predicted protein [Nematostella vectensis] gi|156223423|gb|EDO44258.1| predicted protein [Nematostella vectensis]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 4   TYGENATRYTEEELTSQFMKILESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
            YG +     E E+ +Q +KI++S  ++  PVG+LT++ R +WA+  ++L +D QN+ NL
Sbjct: 185 VYGTDGKPLNEPEIAAQLLKIVQSSDAEEPPVGVLTSENRSVWAKEREVLSQDPQNKENL 244

Query: 64  DLIEKSLITICLDSVPLSP 82
            L++  ++ +CLD  P  P
Sbjct: 245 YLLDSCIVVLCLDK-PCPP 262

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|332028560|gb|EGI68597.1| Choline O-acetyltransferase [Acromyrmex echinatior]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 11  RYTEEELTSQFMKILESQPS-QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKS 69
           R TE EL  Q ++I+E++   +  PVGILTT +R  WA++ + L K+E+NR NL+L+E+ 
Sbjct: 123 RITEIELVQQLLRIMETKADPRTPPVGILTTTKRPAWAKAREELIKNERNRHNLELLERC 182

Query: 70  LITICLDSVPLSPSF 84
           L  +C+D   L  +F
Sbjct: 183 LCVVCIDDDVLPTTF 197

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195072096|ref|XP_001997114.1| GH13910 [Drosophila grimshawi] gi|193906181|gb|EDW05048.1| GH13910 [Drosophila grimshawi]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)

Query: 11  RYTEEELTSQFMKILESQP---SQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIE 67
           + +E E+ SQ + +L   P   ++  PVG+LT + R  WA+  + LQ DE+NR NL+LIE
Sbjct: 135 KLSESEIASQILYVLSDAPCLPAKPAPVGLLTAEPRSQWAQDREALQWDERNRRNLELIE 194

Query: 68  KSLITICLDSVPLSPSF 84
            +L+ +CLD  PL  +F
Sbjct: 195 TALVVLCLDE-PLGVNF 210

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
FB|FBgn0000303	721	Cha "Choline acetyltransferase	0.839	0.101	0.389	1.5e-09
UNIPROTKB|Q90YJ9	640	CHAT "Choline O-acetyltransfer	0.850	0.115	0.415	2.6e-09
ZFIN|ZDB-GENE-040912-162	614	cratb "carnitine O-acetyltrans	0.839	0.118	0.378	6.5e-09
MGI|MGI:109501	626	Crat "carnitine acetyltransfer	0.862	0.119	0.402	8.6e-09
RGD|1303031	626	Crat "carnitine O-acetyltransf	0.862	0.119	0.402	8.6e-09
UNIPROTKB|F1P393	640	CHAT "Choline O-acetyltransfer	0.793	0.107	0.416	8.9e-09
WB|WBGene00007175	614	B0395.3 [Caenorhabditis elegan	0.758	0.107	0.402	1.8e-08
UNIPROTKB|F1RR45	626	CRAT "Uncharacterized protein"	0.827	0.115	0.4	1.8e-08
UNIPROTKB|E2RQL6	626	CRAT "Uncharacterized protein"	0.827	0.115	0.4	3e-08
UNIPROTKB|F8W8I2	545	CHAT "Choline O-acetyltransfer	0.804	0.128	0.369	3.1e-08

FB|FBgn0000303 Cha "Choline acetyltransferase" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 30/77 (38%), Positives = 50/77 (64%)

Query:    11 RYTEEELTSQFMKILESQP---SQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIE 67
             + +E E+ SQ + +L   P   ++  PVG+LT + R  WA   ++LQ+DE+N+ NL+LIE
Sbjct:   282 KLSESEIASQILYVLSDAPCLPAKPVPVGLLTAEPRSTWARDREMLQEDERNQRNLELIE 341

Query:    68 KSLITICLDSVPLSPSF 84
              + + +CLD  PL+ +F
Sbjct:   342 TAQVVLCLDE-PLAGNF 357

GO:0004102 "choline O-acetyltransferase activity" evidence=ISS;IDA

GO:0008292 "acetylcholine biosynthetic process" evidence=NAS

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

UNIPROTKB|Q90YJ9 CHAT "Choline O-acetyltransferase" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 2.6e-09, P = 2.6e-09
 Identities = 32/77 (41%), Positives = 46/77 (59%)

Query:     3 LTYGENATRYTEEELTSQFMKIL---ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQN 59
             L  G N  R +E +L +Q  KI    E++   + P+G+LTT  R  WAE+  IL KD  N
Sbjct:   207 LDVGINFRRLSEGDLFTQLRKIAKMAENEEEMLPPIGLLTTDGRTEWAEARTILMKDSTN 266

Query:    60 RANLDLIEKSLITICLD 76
             R +LD+IE+ +  +CLD
Sbjct:   267 RDSLDMIERCICLVCLD 283

GO:0004102 "choline O-acetyltransferase activity" evidence=IEA

GO:0042136 "neurotransmitter biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-040912-162 cratb "carnitine O-acetyltransferase b" [Danio rerio (taxid:7955)]

 Score = 143 (55.4 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 28/74 (37%), Positives = 48/74 (64%)

Query:     5 YGENATRYTEEELTSQFMKIL-ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
             Y  + T  TE ++ +Q ++I  +S  +   P+GILT++ R  W +++  L +D+ N+ ++
Sbjct:   209 YNSDGTPLTESQIHAQLLRIRSQSWKTDKEPMGILTSEHRHTWGQAYTRLLRDKINKESV 268

Query:    64 DLIEKSLITICLDS 77
              LIEKSL T+CLDS
Sbjct:   269 RLIEKSLFTLCLDS 282

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

MGI|MGI:109501 Crat "carnitine acetyltransferase" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 31/77 (40%), Positives = 48/77 (62%)

Query:     5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
             Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct:   217 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 276

Query:    64 DLIEKSLITICLDS-VP 79
             + I+KS+ T+CLD  VP
Sbjct:   277 NSIQKSIFTVCLDKQVP 293

GO:0004092 "carnitine O-acetyltransferase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=ISO

RGD|1303031 Crat "carnitine O-acetyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 31/77 (40%), Positives = 47/77 (61%)

Query:     5 YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
             Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA+++  L KD+ NR ++
Sbjct:   217 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNSWAKAYSSLIKDKVNRESV 276

Query:    64 DLIEKSLITICLDS-VP 79
             + I+KS+ T+CLD  VP
Sbjct:   277 NSIQKSIFTVCLDKQVP 293

GO:0004092 "carnitine O-acetyltransferase activity" evidence=ISO;IDA

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO;TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=ISO

UNIPROTKB|F1P393 CHAT "Choline O-acetyltransferase" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 30/72 (41%), Positives = 44/72 (61%)

Query:     8 NATRYTEEELTSQFMKIL---ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
             N  R +E +L +Q  KI    E++   + P+G+LTT  R  WAE+  IL KD  NR +LD
Sbjct:   212 NFRRLSEGDLFTQLRKIAKMAENEEEMLPPIGLLTTDGRTEWAEARTILMKDSTNRDSLD 271

Query:    65 LIEKSLITICLD 76
             +IE+ +  +CLD
Sbjct:   272 MIERCICLVCLD 283

GO:0004102 "choline O-acetyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0007274 "neuromuscular synaptic transmission" evidence=IEA

GO:0007529 "establishment of synaptic specificity at neuromuscular junction" evidence=IEA

GO:0007622 "rhythmic behavior" evidence=IEA

GO:0007628 "adult walking behavior" evidence=IEA

GO:0016358 "dendrite development" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0043179 "rhythmic excitation" evidence=IEA

WB|WBGene00007175 B0395.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 27/67 (40%), Positives = 40/67 (59%)

Query:    17 LTSQFMKIL-ESQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICL 75
             +T Q  K++ ESQ    +PVGI+++  RD WA  +  L+KD  N  +L+ +EKSL  +CL
Sbjct:   214 ITQQLAKVVSESQTPNPHPVGIVSSDSRDKWANVYSSLKKDNNNAKSLEAVEKSLFVVCL 273

Query:    76 DSVPLSP 82
             D     P
Sbjct:   274 DKASEPP 280

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

UNIPROTKB|F1RR45 CRAT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:     5 YGENATRYTEEELTSQFMKILESQPSQVN--PVGILTTQRRDMWAESWDILQKDEQNRAN 62
             Y  + T  T +++ +Q  KI  S   Q N  PVGILT+  R+ WA+++  L KD+ NR +
Sbjct:   217 YHSDGTPLTSDQIFTQLEKIWNSS-LQTNKEPVGILTSNHRNSWAKAYSTLIKDKVNRES 275

Query:    63 LDLIEKSLITICLDS 77
             +  I+KS+ T+CLD+
Sbjct:   276 VRSIQKSIFTVCLDA 290

GO:0019254 "carnitine metabolic process, CoA-linked" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0004092 "carnitine O-acetyltransferase activity" evidence=IEA

UNIPROTKB|E2RQL6 CRAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 30/75 (40%), Positives = 47/75 (62%)

Query:     5 YGENATRYTEEELTSQFMKILESQPSQVN--PVGILTTQRRDMWAESWDILQKDEQNRAN 62
             Y  + T  T +++  Q  KI  S   Q N  PVGILT+  R+ WA++++ L KD+ NR +
Sbjct:   217 YHSDGTPLTSDQIFMQLEKIWNSS-LQTNKEPVGILTSNHRNSWAKAYNTLIKDKLNRES 275

Query:    63 LDLIEKSLITICLDS 77
             +  I+KS+ T+CLD+
Sbjct:   276 VRSIQKSIFTLCLDA 290

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

UNIPROTKB|F8W8I2 CHAT "Choline O-acetyltransferase" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 27/73 (36%), Positives = 47/73 (64%)

Query:     8 NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
             N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WAE+  +L KD  NR +LD
Sbjct:   202 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLD 261

Query:    65 LIEKSLITICLDS 77
             +IE+ +  +CLD+
Sbjct:   262 MIERCICLVCLDA 274

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
pfam00755	590	pfam00755, Carn_acyltransf, Choline/Carnitine o-ac	2e-17

>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 3/76 (3%)

Query: 4   TYGENATRYTEEELTSQFMKILE-SQPSQVN--PVGILTTQRRDMWAESWDILQKDEQNR 60
               N    T +E+  Q  +IL  S  SQ    P+G LT++ RD WA++   L KD +N+
Sbjct: 181 VLDSNGKLLTPDEIERQLAEILSDSSKSQPVEAPIGALTSEPRDEWAKARQKLFKDNKNK 240

Query: 61  ANLDLIEKSLITICLD 76
            +L+ IE +L  +CLD
Sbjct: 241 ESLEKIESALFVVCLD 256

Length = 590

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG3717|consensus	612		99.88
PF00755	591	Carn_acyltransf: Choline/Carnitine o-acyltransfera	99.87
KOG3719|consensus	638		99.79
KOG3716|consensus	764		99.69
KOG3718|consensus	609		99.51

>KOG3717|consensus

Probab=99.88  E-value=1.1e-22  Score=152.97  Aligned_cols=79  Identities=38%  Similarity=0.643  Sum_probs=73.7

Q ss_pred             cceecCCCcccCHHHHHHHHHHHHhhCCCCCC---CcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCC
Q psy7502           2 RLTYGENATRYTEEELTSQFMKILESQPSQVN---PVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSV   78 (87)
Q Consensus         2 ~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~~---~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~   78 (87)
                      +.|++++|++++..+|..||.+|+.++...++   |||+||+++||+||++|+.|++++.|+.+|+.||+|+|+||||. 
T Consensus       193 L~v~~~~~~~ls~~~i~~QL~~Iv~~~~~~~~k~~piGilTsd~Rd~WAe~~~~L~kd~~N~dsle~I~~s~f~vCLD~-  271 (612)
T KOG3717|consen  193 LDVYDSDGKPLSEDDIFVQLEKIVSSSSQPNPKLEPVGILTSDPRDNWAEAYETLVKDPVNRDSLETIQKSLFVVCLDA-  271 (612)
T ss_pred             EEEEcCCCCcccHHHHHHHHHHHHHhccCCCCCCCCeeccccCchhHHHHHHHHHhcCcccHHHHHHHhhceEEEEecC-
Confidence            57889999999999999999999999877654   99999999999999999999999999999999999999999998 


Q ss_pred             CCC
Q psy7502          79 PLS   81 (87)
Q Consensus        79 ~~p   81 (87)
                      +.|
T Consensus       272 ~~~  274 (612)
T KOG3717|consen  272 TTP  274 (612)
T ss_pred             CCC
Confidence            544

>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family

Probab=99.87  E-value=1.1e-22  Score=155.22  Aligned_cols=80  Identities=33%  Similarity=0.522  Sum_probs=67.5

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCC---CCCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPS---QVNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~---~~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      +|+|++.+|+++++++|+.||++|++++..   ...+||+||+++||.||++|++|++++.|+++|+.||+|+|+||||+
T Consensus       179 ~v~v~~~~g~~~s~~eL~~~L~~I~~~~~~~~~~~~~vg~LT~~~Rd~Wa~~R~~L~~~~~N~~~L~~Ie~AlFvl~LDd  258 (591)
T PF00755_consen  179 KVDVLDEDGRILSPSELEAQLQRILDDSEKEEPPEPPVGALTADNRDSWAEAREELLSDSENAESLETIESALFVLCLDD  258 (591)
T ss_dssp             EEESEETTSEB--HHHHHHHHHHHHHHHHSGGC-SS-GGGGGGS-HHHHHHHHHHHTTSHHHHHHHHHHHHSS-EEEEES
T ss_pred             EEEEEecCCcccCHHHHHHHHHHHHhhccccccCCCCccccccCCccHHHHHHHHHHhcchhHHHHHHHHhhheEEeccc
Confidence            478999999999999999999999998763   24699999999999999999999997779999999999999999999


Q ss_pred             CCCC
Q psy7502          78 VPLS   81 (87)
Q Consensus        78 ~~~p   81 (87)
                       ..|
T Consensus       259 -~~~  261 (591)
T PF00755_consen  259 -DDP  261 (591)
T ss_dssp             -S-S
T ss_pred             -CCC
Confidence             644

These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....

>KOG3719|consensus

Probab=99.79  E-value=2.1e-19  Score=134.86  Aligned_cols=75  Identities=35%  Similarity=0.529  Sum_probs=68.2

Q ss_pred             cceecCCCcccCHHHHHHHHHHHHhhCCCC--CCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502           2 RLTYGENATRYTEEELTSQFMKILESQPSQ--VNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         2 ~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~--~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      ++|+|++|++++|++|+..|.+|+.++...  ..|+|.||+.+|+.||++|++|++.. |.+.|..|++|+|||||||
T Consensus       228 ~~VLDs~g~i~tp~el~~~l~~Il~d~s~~a~s~plG~lTS~srd~Wa~~R~~L~~~~-~~e~lr~IDsALF~lcLDD  304 (638)
T KOG3719|consen  228 FDVLDSDGKIYTPEELTAILNHILKDSSGIAPSTPLGSLTSESRDNWAEARQRLQSAG-NNELLRKIDSALFVLCLDD  304 (638)
T ss_pred             EEEecCCCcCcCHHHHHHHHHHHHhcccCCCCCCccceecccchhHHHHHHHHHHhcC-ChhhHHhccceeEEEEecC
Confidence            689999999999999999999999976543  24999999999999999999999754 7788999999999999998

>KOG3716|consensus

Probab=99.69  E-value=2.9e-17  Score=125.99  Aligned_cols=76  Identities=25%  Similarity=0.353  Sum_probs=68.9

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCCCC---CCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPSQV---NPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~---~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      |+++++. |++++|.||+.|+++|+++.+.+.   ..+++||+++|+.||++|+.++..+.|+++|+.||+|.|+|+||+
T Consensus       336 Kv~i~~~-~rll~p~eLekq~~eil~~~~~~~~ge~~lAaLTa~~R~~Wa~~R~~~F~~g~Nk~sL~~IE~AafvvsLDe  414 (764)
T KOG3716|consen  336 KVDIYDG-GRLLKPCELEKQFQEILDRDSKPQGGEEKLAALTAGPRDEWARNRQKFFLSGVNKESLEAIETAAFVVSLDE  414 (764)
T ss_pred             EEEEecC-CeeccHHHHHHHHHHHhcCCCCCcchhhHHHhhccCCccHHHHHHHHHHhhcccHHHHHHHhhceEEEEecC
Confidence            5677776 899999999999999999765542   389999999999999999999988999999999999999999996

>KOG3718|consensus

Probab=99.51  E-value=3.1e-14  Score=106.57  Aligned_cols=84  Identities=20%  Similarity=0.189  Sum_probs=68.8

Q ss_pred             cceecCCCcccC-HHHHHHHHHHHHhhCCCC-CCCcccccccchHHHHHHHHHHhc-ChhHHHHHHHHHhhceeEeccCC
Q psy7502           2 RLTYGENATRYT-EEELTSQFMKILESQPSQ-VNPVGILTTQRRDMWAESWDILQK-DEQNRANLDLIEKSLITICLDSV   78 (87)
Q Consensus         2 ~~v~~~~g~~ls-~~~i~~~l~~I~~~~~~~-~~~vg~LT~~~Rd~Wa~~r~~L~~-~~~N~~~L~~Ie~alf~l~LD~~   78 (87)
                      .++++++..+++ |++|...++.+...+..+ +.+|..||+++||.||.+|++|++ ++.|.+.|..||+|+|++|+-+ 
T Consensus       203 fd~~hEdd~~l~~peel~nllk~~k~~ssep~gc~v~~LTs~eRd~WA~nRe~Li~~s~aN~ell~~VeSa~l~lsm~d-  281 (609)
T KOG3718|consen  203 FDCVHEDDTILSAPEELVNLLKVRKILSSEPLGCCVPTLTSDERDTWARNRERLIEISVANKELLLLVESACLELSMYD-  281 (609)
T ss_pred             EEeeccCCcccCCHHHHHHHHHHHHhccCCCCCcchhccccccccHHHHHHHHHHhcChhhHHHHHHHhhheEEEEecc-
Confidence            467888888888 555555555444433333 458999999999999999999998 8999999999999999999999 


Q ss_pred             CCCCCCCC
Q psy7502          79 PLSPSFIG   86 (87)
Q Consensus        79 ~~p~~~~~   86 (87)
                      ..|+++++
T Consensus       282 ~~pedyse  289 (609)
T KOG3718|consen  282 QSPEDYSE  289 (609)
T ss_pred             CCcccHHH
Confidence            99988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
1t7n_A	618	Crystal Structure Of The M564g Mutant Of Murine Cra		2e-09
1ndb_A	596	Crystal Structure Of Carnitine Acetyltransferase Le		2e-09
1t7q_A	618	Crystal Structure Of The F565a Mutant Of Murine Car		2e-09
2h3w_A	599	Crystal Structure Of The S554aM564G MUTANT OF MURIN		2e-09
2h3p_A	599	Crystal Structure Of Murine Carnitine Acetyltransfe		2e-09
1ndf_A	596	Carnitine Acetyltransferase In Complex With Carniti		2e-09
2fy2_A	612	Structures Of Ligand Bound Human Choline Acetyltran		3e-09
1nm8_A	616	Structure Of Human Carnitine Acetyltransferase: Mol		8e-09
1q6x_A	644	Crystal Structure Of Rat Choline Acetyltransferase		2e-08
1t1u_A	639	Structural Insights And Functional Implications Of		2e-08

>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat Length = 618

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 209 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 268
Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 269 NSIQKSIFTVCLD 281

>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase Length = 596

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 188 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 247
Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 248 NSIQKSIFTVCLD 260

>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine Acetyltransferase In Complex With Carnitine And Coa Length = 618

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 209 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 268
Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 269 NSIQKSIFTVCLD 281

>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE Carnitine Acetyltransferase In Complex With Hexanoylcarnitine And Coa Length = 599

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 191 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 250
Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 251 NSIQKSIFTVCLD 263

>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In Complex With Carnitine And Acetyl-Coa Length = 599

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 191 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 250
Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 251 NSIQKSIFTVCLD 263

>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine Length = 596

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 5   YGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRANL 63
           Y  + T  T +++  Q  KI  S   S   PVGILT+  R+ WA++++ L KD+ NR ++
Sbjct: 188 YHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESV 247
Query: 64  DLIEKSLITICLD 76
           + I+KS+ T+CLD
Sbjct: 248 NSIQKSIFTVCLD 260

>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase Provide Insight Into Regulation Of Acetylcholine Synthesis Length = 612

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 3/73 (4%)
Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   +  +++ P+G+LT+  R  WAE+  +L KD  NR +LD
Sbjct: 202 NFRRLSEGDLFTQLRKIVKMASNAAARLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLD 261
Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD+
Sbjct: 262 MIERCICLVCLDA 274

>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular Basis For Fatty Acyl Transfer Length = 616

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 4   TYGENATRYTEEELTSQFMKILESQ-PSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
            Y  + T  T +++  Q  KI  S   +   PVGILT+  R+ WA++++ L KD+ NR +
Sbjct: 195 VYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDS 254
Query: 63  LDLIEKSLITICLDS 77
           +  I+KS+ T+CLD+
Sbjct: 255 VRSIQKSIFTVCLDA 269

>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase Length = 644

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WA++  +L KD  NR +LD
Sbjct: 212 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 271
Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD 
Sbjct: 272 MIERCICLVCLDG 284

>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline Acetyltransferase Length = 639

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WA++  +L KD  NR +LD
Sbjct: 211 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 270
Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD 
Sbjct: 271 MIERCICLVCLDG 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	87
1nm8_A	616	Carnitine O-acetyltransferase; two equally sized d	6e-15
2deb_A	653	CPT II, carnitine O-palmitoyltransferase II, mitoc	2e-13
1t1u_A	639	Choline O-acetyltransferase; choline acetyltransfe	3e-13
1xl7_A	612	COT, peroxisomal carnitine O-octanoyltransferase;	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A* Length = 616

 Score = 67.2 bits (163), Expect = 6e-15
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 4   TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
            Y  + T  T +++  Q  KI   S  +   PVGILT+  R+ WA++++ L KD+ NR +
Sbjct: 195 VYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDS 254

Query: 63  LDLIEKSLITICLD 76
           +  I+KS+ T+CLD
Sbjct: 255 VRSIQKSIFTVCLD 268

>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A* Length = 653

 Score = 62.6 bits (151), Expect = 2e-13
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 4   TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
              ++       E+ +    IL  S P    PV  LT++ RD+WAE    L  D  N   
Sbjct: 251 VLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFD-GNEET 309

Query: 63  LDLIEKSLITICLDSVP 79
           L  ++ ++  +CLD  P
Sbjct: 310 LKKVDSAVFCLCLDDFP 326

>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A* Length = 639

 Score = 62.2 bits (150), Expect = 3e-13
 Identities = 26/72 (36%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WA++  +L KD  NR +LD
Sbjct: 211 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 270

Query: 65  LIEKSLITICLD 76
           +IE+ +  +CLD
Sbjct: 271 MIERCICLVCLD 282

>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A* Length = 612

 Score = 52.5 bits (125), Expect = 8e-10
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 11  RYTEEELTSQFMKILE--SQPSQVNPVGILTTQRRDMWAESWDIL-QKDEQNRANLDLIE 67
             T  EL  Q   I +  S       +  LT++ R  WA++ + L   D +N   L+ I+
Sbjct: 211 LITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQ 270

Query: 68  KSLITICLD 76
            SL    ++
Sbjct: 271 TSLFVYSIE 279

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 33/104 (31%)

Query: 12  YTEEELTSQFMKILESQPS-------QVNP--VGILTTQRRDM---WAESWDILQKDEQN 59
            T +E+ S  +K L+ +P          NP  + I+    RD    W ++W  +  D+  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHVNCDKLT 356

Query: 60  RANLDLIEKSL--------------ITICLDSVPLSPSFIG--W 87
                 IE SL              +++   S  +    +   W
Sbjct: 357 TI----IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
1nm8_A	616	Carnitine O-acetyltransferase; two equally sized d	99.91
2deb_A	653	CPT II, carnitine O-palmitoyltransferase II, mitoc	99.89
1xl7_A	612	COT, peroxisomal carnitine O-octanoyltransferase;	99.89
1t1u_A	639	Choline O-acetyltransferase; choline acetyltransfe	99.89

>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*

Probab=99.91  E-value=2.7e-24  Score=163.93  Aligned_cols=81  Identities=35%  Similarity=0.584  Sum_probs=75.3

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCCCC-CCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCCC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPSQV-NPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVP   79 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~-~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~~   79 (87)
                      +|+|+|++|+++++.+|+.||++|++++...+ .+||+||+++|+.||++|++|++++.|+++|+.||+|+|+||||+ .
T Consensus       192 ~v~v~~~~g~~ls~~ei~~qL~~I~~~~~~~~~~~vg~LTt~~R~~WA~~R~~L~~~~~N~~~L~~IesAlFvvcLDd-~  270 (616)
T 1nm8_A          192 ELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTVCLDA-T  270 (616)
T ss_dssp             EEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTSHHHHHHHHHHHHSSCEEEEEC-C
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHhcccccCCCCccccccCCchHHHHHHHHHhcCchHHHHHHHHHhCeEEEEecc-C
Confidence            47899999999999999999999999776656 699999999999999999999999999999999999999999999 7


Q ss_pred             CCC
Q psy7502          80 LSP   82 (87)
Q Consensus        80 ~p~   82 (87)
                      .|.
T Consensus       271 ~p~  273 (616)
T 1nm8_A          271 MPR  273 (616)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            773

>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*

Probab=99.89  E-value=9.7e-24  Score=161.73  Aligned_cols=82  Identities=22%  Similarity=0.344  Sum_probs=74.1

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCCC-CCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCCC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPSQ-VNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVP   79 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~-~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~~   79 (87)
                      +|+|+|++|+++++.+|+.||++|+++.... ..+||+||+++|+.||++|++|+ ++.|+++|+.||+|+|+||||+ .
T Consensus       248 ~v~v~d~~g~~ls~~ei~~qL~~I~~~~~~~~~~~vg~LTt~~Rd~WA~~R~~L~-~~~N~~sL~~IesAlFvvcLDd-~  325 (653)
T 2deb_A          248 VFDVLDQDGNIVNPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLI-FDGNEETLKKVDSAVFCLCLDD-F  325 (653)
T ss_dssp             EEESBCTTSCBCCHHHHHHHHHHHHHCCCCCCSSCGGGGGGSCHHHHHHHHHHHH-HTTCHHHHHHHHHSSCEEEECS-S
T ss_pred             EEEEECCCCCcCCHHHHHHHHHHHHhccccccCCCccccccCCchHHHHHHHHHh-ChhhHHHHHHHHhceEEEEecC-C
Confidence            4789999999999999999999999964333 45999999999999999999999 8899999999999999999999 8


Q ss_pred             CCCCC
Q psy7502          80 LSPSF   84 (87)
Q Consensus        80 ~p~~~   84 (87)
                      .|.+.
T Consensus       326 ~~~~~  330 (653)
T 2deb_A          326 PMKDL  330 (653)
T ss_dssp             CCCSH
T ss_pred             CCCCH
Confidence            77653

>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*

Probab=99.89  E-value=1.5e-23  Score=159.76  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=72.4

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhh--CCCCCCCcccccccchHHHHHHHHHHhc-ChhHHHHHHHHHhhceeEeccC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILES--QPSQVNPVGILTTQRRDMWAESWDILQK-DEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~--~~~~~~~vg~LT~~~Rd~Wa~~r~~L~~-~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      +|+|++ +|+++++.+|+.||++|+++  ....+.+||+||+++|+.||++|++|++ ++.|+++|+.||+|+|+||||+
T Consensus       202 ~v~v~~-~g~~ls~~el~~ql~~I~~~~~~~~~~~~vg~LTt~~R~~WA~~R~~L~~~~~~N~~~L~~IesAlFvvcLDd  280 (612)
T 1xl7_A          202 VFDVLH-EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIED  280 (612)
T ss_dssp             EEESEE-TTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHHHHHHHHHHCHHHHHHHHHHHHSSCEEEECC
T ss_pred             EEEEEE-CCeeCCHHHHHHHHHHHHhhccccCCCCCccccccCCcHHHHHHHHHHHhcCchHHHHHHHHHhCeEEEEecc
Confidence            478998 99999999999999999984  4333569999999999999999999998 9999999999999999999999


Q ss_pred             CCCC
Q psy7502          78 VPLS   81 (87)
Q Consensus        78 ~~~p   81 (87)
                       ..|
T Consensus       281 -~~p  283 (612)
T 1xl7_A          281 -SSP  283 (612)
T ss_dssp             -CCC
T ss_pred             -CCC
Confidence             877

>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*

Probab=99.89  E-value=2.3e-23  Score=159.29  Aligned_cols=79  Identities=34%  Similarity=0.601  Sum_probs=72.1

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCCCCC---CcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPSQVN---PVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~~~---~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      +|+|+ .+|+++++.+|+.||++|++++...+.   +||+||+++|+.||++|++|++++.|+++|+.||+|+|+||||+
T Consensus       205 ~v~v~-~~g~~ls~~el~~qL~~I~~~~~~~~~~~~~vg~LTt~~R~~WA~~R~~L~~~~~N~~sL~~IesAlFvvcLDd  283 (639)
T 1t1u_A          205 VLDVV-INFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDG  283 (639)
T ss_dssp             EEESE-ETTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHHHTTSHHHHHHHHHHHTCSCEEEECC
T ss_pred             EEEEe-eCCeeCCHHHHHHHHHHHHhcCCccccccCCccccccCCchHHHHHHHHHhhCchHHHHHHHHHhcEEEEEecC
Confidence            46888 789999999999999999987654433   99999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy7502          78 VPLS   81 (87)
Q Consensus        78 ~~~p   81 (87)
                       ..|
T Consensus       284 -~~p  286 (639)
T 1t1u_A          284 -PGT  286 (639)
T ss_dssp             -CCS
T ss_pred             -CCC
Confidence             776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	87
d1t1ua1	382	c.43.1.3 (A:20-401) Choline O-acetyltransferase {R	4e-13
d1nm8a1	377	c.43.1.3 (A:9-385) Carnitine acetyltransferase {Hu	8e-13
d1xl7a1	382	c.43.1.3 (A:11-392) Peroxisomal carnitine O-octano	6e-11

>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 382

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Choline O-acetyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.4 bits (146), Expect = 4e-13
 Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 3/73 (4%)

Query: 8   NATRYTEEELTSQFMKILE---SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRANLD 64
           N  R +E +L +Q  KI++   ++  ++ P+G+LT+  R  WA++  +L KD  NR +LD
Sbjct: 193 NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLD 252

Query: 65  LIEKSLITICLDS 77
           +IE+ +  +CLD 
Sbjct: 253 MIERCICLVCLDG 265

>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 377

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Carnitine acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 8e-13
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 4   TYGENATRYTEEELTSQFMKILE-SQPSQVNPVGILTTQRRDMWAESWDILQKDEQNRAN 62
            Y  + T  T +++  Q  KI   S  +   PVGILT+  R+ WA++++ L KD+ NR +
Sbjct: 187 VYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDS 246

Query: 63  LDLIEKSLITICLD 76
           +  I+KS+ T+CLD
Sbjct: 247 VRSIQKSIFTVCLD 260

>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]} Length = 382

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (130), Expect = 6e-11
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 8   NATRYTEEELTSQFMKILE--SQPSQVNPVGILTTQRRDMWAESWD-ILQKDEQNRANLD 64
                T  EL  Q   I +  S       +  LT++ R  WA++ + ++  D +N   L+
Sbjct: 198 EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLE 257

Query: 65  LIEKSLITICLD 76
            I+ SL    ++
Sbjct: 258 KIQTSLFVYSIE 269

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1nm8a1	377	Carnitine acetyltransferase {Human (Homo sapiens)	99.92
d1xl7a1	382	Peroxisomal carnitine O-octanoyltransferase, COT {	99.9
d1t1ua1	382	Choline O-acetyltransferase {Rat (Rattus norvegicu	99.89

>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Carnitine acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1e-25  Score=161.80  Aligned_cols=84  Identities=33%  Similarity=0.539  Sum_probs=77.2

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCCC-CCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccCCC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPSQ-VNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDSVP   79 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~-~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~~~   79 (87)
                      +|+|+|++|+++++.+|+.||+.|++++.+. ..+||+||+++|+.||++|++|++++.|+++|+.||+|+|+||||+ .
T Consensus       184 kv~v~d~~g~~ls~~ei~~~l~~I~~~~~~~~~~~vg~LTt~~Rd~Wa~~r~~L~~~~~N~~~L~~Iesalfvv~LDd-~  262 (377)
T d1nm8a1         184 ELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQKSIFTVCLDA-T  262 (377)
T ss_dssp             EEECBCTTSCBCCHHHHHHHHHHHHHTCCCCCSCCGGGGGGSCHHHHHHHHHHHTTSHHHHHHHHHHHHSSCEEEEEC-C
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHhhccccCCCCcccccCCCcHHHHHHHHHHhcCchHHHHHHHHHhcEEEEEecC-C
Confidence            5789999999999999999999999987654 4599999999999999999999999999999999999999999999 8


Q ss_pred             CCCCCC
Q psy7502          80 LSPSFI   85 (87)
Q Consensus        80 ~p~~~~   85 (87)
                      .|.+.+
T Consensus       263 ~p~~~~  268 (377)
T d1nm8a1         263 MPRVSE  268 (377)
T ss_dssp             CSCCCS
T ss_pred             CCCCcc
Confidence            887643

>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Peroxisomal carnitine O-octanoyltransferase, COT
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.1e-24  Score=152.38  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=71.9

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCC--CCCCcccccccchHHHHHHHHHHhc-ChhHHHHHHHHHhhceeEeccC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPS--QVNPVGILTTQRRDMWAESWDILQK-DEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~--~~~~vg~LT~~~Rd~Wa~~r~~L~~-~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      +|+|++ +|+++++.+|+.||+.|++++..  ..++||+||+++|+.||++|++|++ ++.|+++|+.||+|+|+||||+
T Consensus       192 kv~v~~-~~~~~s~~el~~~l~~I~~~~~~~~~~~~vg~LTt~~Rd~WA~~R~~L~~~~~~N~~~L~~Ie~AlfvvcLD~  270 (382)
T d1xl7a1         192 VFDVLH-EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIED  270 (382)
T ss_dssp             EEESEE-TTEECCHHHHHHHHHHHHHHHHTSCCCCCGGGGGGSCHHHHHHHHHHHHHHCHHHHHHHHHHHHSSCEEEECC
T ss_pred             EEEEee-CCeECCHHHHHHHHHHHHHhcccCCCCCCccccCccccHHHHHHHHHHhhCChhhHHHHHHHHhceEEEeecc
Confidence            478887 78999999999999999986433  2458999999999999999999997 8999999999999999999999


Q ss_pred             CCCCCC
Q psy7502          78 VPLSPS   83 (87)
Q Consensus        78 ~~~p~~   83 (87)
                       ..|.+
T Consensus       271 -~~~~~  275 (382)
T d1xl7a1         271 -SSPHA  275 (382)
T ss_dssp             -CCCCC
T ss_pred             -cCCCC
Confidence             76654

>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: Choline/Carnitine O-acyltransferase
domain: Choline O-acetyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.1e-23  Score=151.42  Aligned_cols=82  Identities=33%  Similarity=0.586  Sum_probs=73.4

Q ss_pred             CcceecCCCcccCHHHHHHHHHHHHhhCCCC---CCCcccccccchHHHHHHHHHHhcChhHHHHHHHHHhhceeEeccC
Q psy7502           1 MRLTYGENATRYTEEELTSQFMKILESQPSQ---VNPVGILTTQRRDMWAESWDILQKDEQNRANLDLIEKSLITICLDS   77 (87)
Q Consensus         1 ~~~v~~~~g~~ls~~~i~~~l~~I~~~~~~~---~~~vg~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alf~l~LD~   77 (87)
                      +|+|++ +|+++++.+|+.||+.|++.+...   .++||+||+++|+.||++|++|++++.|+++|+.||+|+|+||||+
T Consensus       187 ~v~v~~-~~~~l~~~ei~~~l~~I~~~~~~~~~~~~~ig~LT~~~Rd~Wa~~r~~L~~~~~N~~~L~~Ie~alfvv~LDd  265 (382)
T d1t1ua1         187 VLDVVI-NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMIERCICLVCLDG  265 (382)
T ss_dssp             EEESEE-TTEECCHHHHHHHHHHHHHHHTCSTTCCCCGGGGGGSCHHHHHHHHHHHTTSHHHHHHHHHHHTCSCEEEECC
T ss_pred             EEEEEE-CCeeCCHHHHHHHHHHHHhccccccccCCCccccccCChHHHHHHHHHHhcCcchHHHHHHHHhceEEEEeCC
Confidence            467887 788999999999999999875433   3589999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy7502          78 VPLSPSF   84 (87)
Q Consensus        78 ~~~p~~~   84 (87)
                       +.|.+.
T Consensus       266 -~~~~~~  271 (382)
T d1t1ua1         266 -PGTGEL  271 (382)
T ss_dssp             -CCSSCC
T ss_pred             -CCCCCh
Confidence             888654