Psyllid ID: psy7619


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT
cccccccEEEEEEcccccHHHHHcccccEEEEEccccEEEEEcccccccccccccccEEEccEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEcccccc
ccccccEEEEEEEEccccHHHHHccccEEEEEcccccEEEEEcccccccccccccccEEEccEEEcccccHHHHHHHHcHHHHHHHcccccEEEEEEccccc
mksydeniKVVVRcrpmnvperkaHVENVIKIdttkkclsiqystdrlkprqpgkarrftfdavygMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT
mksydenikvvvrcrpmnvperkahvenvikidttkkclsiqystdrlkprqpgkarRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT
MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT
*******IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDR********ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYG****
****DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSI****************RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG*
MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYST********GKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT
****DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRL**RQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQ***
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query102 2.2.26 [Sep-21-2011]
Q61771 747 Kinesin-like protein KIF3 yes N/A 0.892 0.121 0.444 2e-17
O15066 747 Kinesin-like protein KIF3 yes N/A 0.872 0.119 0.445 2e-17
P46872 699 Kinesin-II 85 kDa subunit yes N/A 0.941 0.137 0.42 8e-17
Q6P9P6 1052 Kinesin-like protein KIF1 no N/A 0.882 0.085 0.428 2e-16
P52732 1056 Kinesin-like protein KIF1 no N/A 0.911 0.088 0.432 2e-16
Q9Y496 699 Kinesin-like protein KIF3 no N/A 0.901 0.131 0.412 3e-16
Q5R4H3 702 Kinesin-like protein KIF3 no N/A 0.901 0.131 0.412 3e-16
Q4R628 702 Kinesin-like protein KIF3 N/A N/A 0.901 0.131 0.412 4e-16
P28741 701 Kinesin-like protein KIF3 no N/A 0.901 0.131 0.381 5e-16
P28025 1067 Kinesin-like protein KIF1 N/A N/A 0.892 0.085 0.454 1e-15
>sp|Q61771|KIF3B_MOUSE Kinesin-like protein KIF3B OS=Mus musculus GN=Kif3b PE=1 SV=1 Back     alignment and function desciption
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/99 (44%), Positives = 62/99 (62%), Gaps = 8/99 (8%)

Query: 6   ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQ--YSTDRLKPRQPGKARRFTFDA 63
           E+++VVVRCRPMN  E+ A  + V+ +D     +S++    T    P+       FTFDA
Sbjct: 8   ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTSHEMPKT------FTFDA 61

Query: 64  VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
           VY   A Q E+Y+ + RP+V+ +L G+N TIFAYGQTGT
Sbjct: 62  VYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGT 100




Involved in tethering the chromosomes to the spindle pole and in chromosome movement. Microtubule-based anterograde translocator for membranous organelles. Plus end-directed microtubule sliding activity in vitro.
Mus musculus (taxid: 10090)
>sp|O15066|KIF3B_HUMAN Kinesin-like protein KIF3B OS=Homo sapiens GN=KIF3B PE=1 SV=1 Back     alignment and function description
>sp|P46872|KRP85_STRPU Kinesin-II 85 kDa subunit OS=Strongylocentrotus purpuratus GN=KRP85 PE=1 SV=1 Back     alignment and function description
>sp|Q6P9P6|KIF11_MOUSE Kinesin-like protein KIF11 OS=Mus musculus GN=Kif11 PE=2 SV=1 Back     alignment and function description
>sp|P52732|KIF11_HUMAN Kinesin-like protein KIF11 OS=Homo sapiens GN=KIF11 PE=1 SV=2 Back     alignment and function description
>sp|Q9Y496|KIF3A_HUMAN Kinesin-like protein KIF3A OS=Homo sapiens GN=KIF3A PE=1 SV=4 Back     alignment and function description
>sp|Q5R4H3|KIF3A_PONAB Kinesin-like protein KIF3A OS=Pongo abelii GN=KIF3A PE=2 SV=1 Back     alignment and function description
>sp|Q4R628|KIF3A_MACFA Kinesin-like protein KIF3A OS=Macaca fascicularis GN=KIF3A PE=2 SV=1 Back     alignment and function description
>sp|P28741|KIF3A_MOUSE Kinesin-like protein KIF3A OS=Mus musculus GN=Kif3a PE=1 SV=2 Back     alignment and function description
>sp|P28025|KI11B_XENLA Kinesin-like protein KIF11-B OS=Xenopus laevis GN=kif11-b PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query102
348511105 766 PREDICTED: kinesin-like protein KIF3C-li 0.911 0.121 0.474 3e-17
198420544 687 PREDICTED: similar to Kinesin family mem 0.901 0.133 0.418 9e-17
61098208 739 kinesin-like protein KIF3B [Gallus gallu 0.892 0.123 0.444 1e-16
449274140 739 Kinesin-like protein KIF3B [Columba livi 0.911 0.125 0.443 2e-16
449486220 740 PREDICTED: LOW QUALITY PROTEIN: kinesin- 0.892 0.122 0.444 2e-16
321474498 753 hypothetical protein DAPPUDRAFT_300452 [ 0.892 0.120 0.432 3e-16
452823115 1108 kinesin family member isoform 2 [Galdier 0.941 0.086 0.432 3e-16
452823114 1068 kinesin family member isoform 1 [Galdier 0.941 0.089 0.432 3e-16
301625936 753 PREDICTED: kinesin-like protein KIF3C-li 0.892 0.120 0.444 4e-16
354480335 747 PREDICTED: kinesin-like protein KIF3B [C 0.892 0.121 0.444 4e-16
>gi|348511105|ref|XP_003443085.1| PREDICTED: kinesin-like protein KIF3C-like [Oreochromis niloticus] Back     alignment and taxonomy information
 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 4/97 (4%)

Query: 6   ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
           E ++VVVRCRP +  E  A  EN+++ID   K   I     +  P +P K   FTFD+VY
Sbjct: 8   EAVRVVVRCRPFSRREEIAGSENILEIDD--KLGQITVRNPKAPPDEPMKV--FTFDSVY 63

Query: 66  GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
           G  + Q++IY+++VRP+V  +L G+N TIFAYGQTGT
Sbjct: 64  GWNSKQSDIYDDAVRPLVESVLQGFNGTIFAYGQTGT 100




Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|198420544|ref|XP_002129061.1| PREDICTED: similar to Kinesin family member 3A [Ciona intestinalis] Back     alignment and taxonomy information
>gi|61098208|ref|NP_001012852.1| kinesin-like protein KIF3B [Gallus gallus] gi|326932058|ref|XP_003212138.1| PREDICTED: kinesin-like protein KIF3B-like [Meleagris gallopavo] gi|60098561|emb|CAH65111.1| hypothetical protein RCJMB04_3m6 [Gallus gallus] Back     alignment and taxonomy information
>gi|449274140|gb|EMC83423.1| Kinesin-like protein KIF3B [Columba livia] Back     alignment and taxonomy information
>gi|449486220|ref|XP_004177104.1| PREDICTED: LOW QUALITY PROTEIN: kinesin-like protein KIF3B [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|321474498|gb|EFX85463.1| hypothetical protein DAPPUDRAFT_300452 [Daphnia pulex] Back     alignment and taxonomy information
>gi|452823115|gb|EME30128.1| kinesin family member isoform 2 [Galdieria sulphuraria] Back     alignment and taxonomy information
>gi|452823114|gb|EME30127.1| kinesin family member isoform 1 [Galdieria sulphuraria] Back     alignment and taxonomy information
>gi|301625936|ref|XP_002942156.1| PREDICTED: kinesin-like protein KIF3C-like [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|354480335|ref|XP_003502363.1| PREDICTED: kinesin-like protein KIF3B [Cricetulus griseus] gi|344244177|gb|EGW00281.1| Kinesin-like protein KIF3B [Cricetulus griseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query102
UNIPROTKB|C9J9X2169 KIF3A "Kinesin-like protein KI 0.901 0.544 0.412 5.3e-17
UNIPROTKB|Q5F423 739 KIF3B "Uncharacterized protein 0.950 0.131 0.450 2.1e-16
UNIPROTKB|F1PQE6 451 KIF3A "Uncharacterized protein 0.901 0.203 0.412 2.6e-16
UNIPROTKB|E2QXT6 1052 KIF11 "Uncharacterized protein 0.911 0.088 0.443 3.5e-16
UNIPROTKB|E1BF29 1055 KIF11 "Uncharacterized protein 0.911 0.088 0.443 3.6e-16
UNIPROTKB|F1SC89 1059 KIF11 "Uncharacterized protein 0.911 0.087 0.443 3.6e-16
UNIPROTKB|F1N020 743 KIF3B "Uncharacterized protein 0.950 0.130 0.441 4.4e-16
UNIPROTKB|E2QUS2 747 KIF3B "Uncharacterized protein 0.950 0.129 0.441 4.5e-16
MGI|MGI:107688 747 Kif3b "kinesin family member 3 0.950 0.129 0.460 4.5e-16
UNIPROTKB|O15066 747 KIF3B "Kinesin-like protein KI 0.950 0.129 0.460 5.7e-16
UNIPROTKB|C9J9X2 KIF3A "Kinesin-like protein KIF3A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/97 (41%), Positives = 63/97 (64%)

Query:     6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
             +N+KVVVRCRP+N  E+    +  + +D  +  +++ + TD     +P K   FTFD V+
Sbjct:    12 DNVKVVVRCRPLNEREKSMCYKQAVSVDEMRGTITV-HKTD--SSNEPPKT--FTFDTVF 66

Query:    66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
             G ++ Q ++Y  + RP+++ +L GYN TIFAYGQTGT
Sbjct:    67 GPESKQLDVYNLTARPIIDSVLEGYNGTIFAYGQTGT 103




GO:0003777 "microtubule motor activity" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005874 "microtubule" evidence=IEA
UNIPROTKB|Q5F423 KIF3B "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PQE6 KIF3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXT6 KIF11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF29 KIF11 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SC89 KIF11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1N020 KIF3B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUS2 KIF3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:107688 Kif3b "kinesin family member 3B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O15066 KIF3B "Kinesin-like protein KIF3B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query102
cd01364 352 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC 1e-30
smart00129 335 smart00129, KISc, Kinesin motor, catalytic domain 2e-29
cd01371 333 cd01371, KISc_KIF3, Kinesin motor domain, kinesins 3e-29
pfam00225 326 pfam00225, Kinesin, Kinesin motor domain 3e-23
cd00106 328 cd00106, KISc, Kinesin motor domain 3e-23
cd01372 341 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik 3e-22
cd01370 338 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP 2e-21
cd01369 325 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine 5e-21
cd01376 319 cd01376, KISc_KID_like, Kinesin motor domain, KIF2 4e-18
cd01366 329 cd01366, KISc_C_terminal, Kinesin motor domain, KI 5e-18
cd01365 356 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K 9e-18
cd01374 321 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E 5e-16
cd01367 322 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF 3e-15
COG5059 568 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] 9e-14
cd01373 337 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP 2e-13
cd01375 334 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF 7e-13
cd01368 345 cd01368, KISc_KIF23_like, Kinesin motor domain, KI 3e-12
PLN03188 1320 PLN03188, PLN03188, kinesin-12 family protein; Pro 2e-11
cd01363 186 cd01363, Motor_domain, Myosin and Kinesin motor do 6e-07
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
 Score =  110 bits (277), Expect = 1e-30
 Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 5/98 (5%)

Query: 5   DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
           + NI+VVVRCRP N  ERK     V+++  + K + +               + +TFD V
Sbjct: 1   ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKV 55

Query: 65  YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
           +G +A Q E+Y   V P+++ +L GYN TIFAYGQTGT
Sbjct: 56  FGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGT 93


This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain Back     alignment and domain information
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain Back     alignment and domain information
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group Back     alignment and domain information
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional Back     alignment and domain information
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 102
KOG0243|consensus 1041 99.97
cd01367 322 KISc_KIF2_like Kinesin motor domain, KIF2-like gro 99.96
cd01370 338 KISc_KIP3_like Kinesin motor domain, KIP3-like sub 99.96
cd01368 345 KISc_KIF23_like Kinesin motor domain, KIF23-like s 99.96
cd01371 333 KISc_KIF3 Kinesin motor domain, kinesins II or KIF 99.96
KOG4280|consensus 574 99.96
cd01373 337 KISc_KLP2_like Kinesin motor domain, KLP2-like sub 99.95
cd01365 356 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p 99.95
cd01364 352 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind 99.95
KOG0245|consensus 1221 99.95
cd01369 325 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy 99.95
KOG0240|consensus 607 99.95
cd01376 319 KISc_KID_like Kinesin motor domain, KIF22/Kid-like 99.94
cd01372 341 KISc_KIF4 Kinesin motor domain, KIF4-like subfamil 99.94
cd01374 321 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like 99.94
KOG0241|consensus 1714 99.94
KOG0239|consensus 670 99.94
cd01375 334 KISc_KIF9_like Kinesin motor domain, KIF9-like sub 99.93
KOG0242|consensus 675 99.93
PLN03188 1320 kinesin-12 family protein; Provisional 99.92
cd00106 328 KISc Kinesin motor domain. This catalytic (head) d 99.92
cd01366 329 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ 99.92
smart00129 335 KISc Kinesin motor, catalytic domain. ATPase. Micr 99.92
KOG0246|consensus 676 99.92
PF00225 335 Kinesin: Kinesin motor domain; InterPro: IPR001752 99.88
KOG0247|consensus 809 99.75
KOG0244|consensus 913 99.67
COG5059 568 KIP1 Kinesin-like protein [Cytoskeleton] 99.67
cd01363 186 Motor_domain Myosin and Kinesin motor domain. Thes 99.39
COG5059 568 KIP1 Kinesin-like protein [Cytoskeleton] 89.82
PF00308 219 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 87.8
KOG1800|consensus 468 82.3
>KOG0243|consensus Back     alignment and domain information
Probab=99.97  E-value=5.4e-30  Score=189.37  Aligned_cols=94  Identities=41%  Similarity=0.761  Sum_probs=82.8

Q ss_pred             CCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHH
Q psy7619           4 YDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV   83 (102)
Q Consensus         4 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v   83 (102)
                      .+.||+|+|||||++.+|....+..+|.+++..+.|.+...-.     .....+.|+||+||+|.+.|++||+..+.|+|
T Consensus        47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~-----sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i  121 (1041)
T KOG0243|consen   47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA-----SKQIDKTFTFDKVFGPESQQEDLYDQAVSPII  121 (1041)
T ss_pred             CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc-----cccccceeecceeeCcchhHHHHHHHHHHHHH
Confidence            4579999999999999999999999999998666677765421     22257899999999999999999999999999


Q ss_pred             HHhhCcccEEEEEeccCCC
Q psy7619          84 NHMLHGYNVTIFAYGQTGT  102 (102)
Q Consensus        84 ~~~l~G~n~~i~aYGqTgS  102 (102)
                      ..+++|||||||||||||+
T Consensus       122 ~eVl~GyNCTIFAYGQTGT  140 (1041)
T KOG0243|consen  122 KEVLEGYNCTIFAYGQTGT  140 (1041)
T ss_pred             HHHhccCCceEEEecCCCC
Confidence            9999999999999999996



>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group Back     alignment and domain information
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup Back     alignment and domain information
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup Back     alignment and domain information
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins Back     alignment and domain information
>KOG4280|consensus Back     alignment and domain information
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup Back     alignment and domain information
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins Back     alignment and domain information
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division Back     alignment and domain information
>KOG0245|consensus Back     alignment and domain information
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup Back     alignment and domain information
>KOG0240|consensus Back     alignment and domain information
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup Back     alignment and domain information
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily Back     alignment and domain information
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis Back     alignment and domain information
>KOG0241|consensus Back     alignment and domain information
>KOG0239|consensus Back     alignment and domain information
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling Back     alignment and domain information
>KOG0242|consensus Back     alignment and domain information
>PLN03188 kinesin-12 family protein; Provisional Back     alignment and domain information
>cd00106 KISc Kinesin motor domain Back     alignment and domain information
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins Back     alignment and domain information
>smart00129 KISc Kinesin motor, catalytic domain Back     alignment and domain information
>KOG0246|consensus Back     alignment and domain information
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport Back     alignment and domain information
>KOG0247|consensus Back     alignment and domain information
>KOG0244|consensus Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>cd01363 Motor_domain Myosin and Kinesin motor domain Back     alignment and domain information
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication Back     alignment and domain information
>KOG1800|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query102
3b6u_A 372 Crystal Structure Of The Motor Domain Of Human Kine 2e-18
3hqd_A 369 Human Kinesin Eg5 Motor Domain In Complex With Ampp 6e-18
1x88_A 359 Human Eg5 Motor Domain Bound To Mg-Adp And Monastro 6e-18
4a28_A 368 Eg5-2 Length = 368 6e-18
4a1z_A 368 Eg5-1 Length = 368 6e-18
3zcw_A 348 Eg5 - New Allosteric Binding Site Length = 348 6e-18
1q0b_A 367 Crystal Structure Of The Motor Protein Ksp In Compl 6e-18
1ii6_A 368 Crystal Structure Of The Mitotic Kinesin Eg5 In Com 6e-18
4ap0_A 370 The Mitotic Kinesin Eg5 In Complex With Mg-Adp And 7e-18
4aqv_C 373 Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma 3e-17
2vvg_A 350 Crystal Structure Of The G.Intestinalis Kinesin 2 G 4e-16
3b6v_A 395 Crystal Structure Of The Motor Domain Of Human Kine 9e-16
2wbe_C 373 Kinesin-5-Tubulin Complex With Amppnp Length = 373 4e-13
1goj_A 355 Structure Of A Fast Kinesin: Implications For Atpas 4e-12
3lre_A 355 Crystal Structure Analysis Of Human Kinesin-8 Motor 6e-12
2y5w_A 365 Crystal Structure Of Drosophila Melanogaster Kinesi 4e-10
1i5s_A 367 Crystal Structure Of The Kif1a Motor Domain Complex 4e-09
1ia0_K 394 Kif1a Head-Microtubule Complex Structure In Atp-For 4e-09
1vfv_A 366 Crystal Structure Of The Kif1a Motor Domain Complex 4e-09
1i6i_A 366 Crystal Structure Of The Kif1a Motor Domain Complex 4e-09
4a14_A 344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 1e-08
2xt3_A 344 Human Kif7, A Kinesin Involved In Hedgehog Signalli 1e-08
3bfn_A 388 Crystal Structure Of The Motor Domain Of Human Kine 1e-08
3t0q_A 349 Motor Domain Structure Of The Kar3-Like Kinesin Fro 1e-08
1t5c_A 349 Crystal Structure Of The Motor Domain Of Human Kine 2e-08
3h4s_A 386 Structure Of The Complex Of A Mitotic Kinesin With 6e-08
4etp_A 403 C-Terminal Motor And Motor Homology Domain Of Kar3v 1e-07
1f9v_A 347 Crystal Structures Of Mutants Reveal A Signalling P 2e-07
3kar_A 346 The Motor Domain Of Kinesin-Like Protein Kar3, A Sa 2e-07
1f9w_A 347 Crystal Structures Of Mutants Reveal A Signalling P 2e-07
1f9u_A 347 Crystal Structures Of Mutants Reveal A Signalling P 2e-07
1f9t_A 358 Crystal Structures Of Kinesin Mutants Reveal A Sign 2e-07
3gbj_A 354 Crystal Structure Of The Motor Domain Of Kinesin Ki 5e-07
2h58_A 330 Crystal Structure Of The Kifc3 Motor Domain In Comp 5e-07
4atx_C 340 Rigor Kinesin Motor Domain With An Ordered Neck-Lin 6e-07
4gkr_A 371 Structure Of The C-Terminal Motor Domain Of Kar3 Fr 8e-07
1bg2_A 325 Human Ubiquitous Kinesin Motor Domain Length = 325 1e-06
1mkj_A 349 Human Kinesin Motor Domain With Docked Neck Linker 1e-06
1sdm_A 369 Crystal Structure Of Kinesin-Like Calmodulin Bindin 1e-06
3u06_A 412 Crystal Structure Of The Kinesin-14 Ncdg347d Length 2e-06
1cz7_A 406 The Crystal Structure Of A Minus-End Directed Micro 3e-06
1n6m_A 409 Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY 3e-06
2heh_A 387 Crystal Structure Of The Kif2c Motor Domain (Casp T 3e-06
2ncd_A 420 Ncd (Non-Claret Disjunctional) Dimer From D. Melano 3e-06
1v8j_A 410 The Crystal Structure Of The Minimal Functional Dom 3e-06
3l1c_A 383 Kinesin-14 Protein Ncd, T436s Mutant Length = 383 5e-06
3edl_D 331 Kinesin13-Microtubule Ring Complex Length = 331 7e-06
2kin_A 238 Kinesin (Monomeric) From Rattus Norvegicus Length = 7e-06
1ry6_A 360 Crystal Structure Of Internal Kinesin Motor Domain 3e-05
3dc4_A 344 Crystal Structure Of The Drosophila Kinesin Family 3e-05
3pxn_A 344 Crystal Structure Of The Drosophila Kinesin Family 3e-05
2owm_A 443 Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3 7e-05
2rep_A 376 Crystal Structure Of The Motor Domain Of Human Kine 1e-04
2gry_A 420 Crystal Structure Of The Human Kif2 Motor Domain In 2e-04
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372 Back     alignment and structure

Iteration: 1

Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 8/99 (8%) Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA--RRFTFDA 63 E+++VVVRCRPMN E+ A + V+ +D +S++ P+ + FTFDA Sbjct: 21 ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVK------NPKGTAHEMPKTFTFDA 74 Query: 64 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 VY A Q E+Y+ + RP+V+ +L G+N TIFAYGQTGT Sbjct: 75 VYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGT 113
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369 Back     alignment and structure
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359 Back     alignment and structure
>pdb|4A28|A Chain A, Eg5-2 Length = 368 Back     alignment and structure
>pdb|4A1Z|A Chain A, Eg5-1 Length = 368 Back     alignment and structure
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348 Back     alignment and structure
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367 Back     alignment and structure
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368 Back     alignment and structure
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370 Back     alignment and structure
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373 Back     alignment and structure
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350 Back     alignment and structure
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395 Back     alignment and structure
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp Length = 373 Back     alignment and structure
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355 Back     alignment and structure
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain Length = 355 Back     alignment and structure
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365 Back     alignment and structure
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367 Back     alignment and structure
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394 Back     alignment and structure
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366 Back     alignment and structure
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366 Back     alignment and structure
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344 Back     alignment and structure
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 22 Length = 388 Back     alignment and structure
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349 Back     alignment and structure
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349 Back     alignment and structure
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386 Back     alignment and structure
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403 Back     alignment and structure
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346 Back     alignment and structure
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347 Back     alignment and structure
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358 Back     alignment and structure
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354 Back     alignment and structure
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330 Back     alignment and structure
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340 Back     alignment and structure
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371 Back     alignment and structure
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325 Back     alignment and structure
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349 Back     alignment and structure
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369 Back     alignment and structure
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412 Back     alignment and structure
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406 Back     alignment and structure
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409 Back     alignment and structure
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target) Length = 387 Back     alignment and structure
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420 Back     alignment and structure
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of The Microtubule Destabilizer Kif2c Complexed With Mg-adp Length = 410 Back     alignment and structure
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383 Back     alignment and structure
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex Length = 331 Back     alignment and structure
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238 Back     alignment and structure
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain Length = 360 Back     alignment and structure
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344 Back     alignment and structure
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344 Back     alignment and structure
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443 Back     alignment and structure
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376 Back     alignment and structure
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query102
1x88_A 359 Kinesin-like protein KIF11; switch II, motor domai 3e-38
2vvg_A 350 Kinesin-2; motor protein, nucleotide-binding, micr 2e-37
2wbe_C 373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 2e-37
3b6u_A 372 Kinesin-like protein KIF3B; structural genomics co 5e-37
1goj_A 355 Kinesin, kinesin heavy chain; motor protein, ATPas 9e-37
3bfn_A 388 Kinesin-like protein KIF22; limited proteolysis, s 2e-36
4a14_A 344 Kinesin, kinesin-like protein KIF7; motor protein, 3e-36
2y65_A 365 Kinesin, kinesin heavy chain; motor protein; HET: 4e-35
2heh_A 387 KIF2C protein; kinesin, motor domain, ADP, structu 7e-35
1v8k_A 410 Kinesin-like protein KIF2C; microtubule destabiliz 3e-34
1bg2_A 325 Kinesin; motor protein, ATPase, microtubule associ 6e-34
3lre_A 355 Kinesin-like protein KIF18A; motor protein, nucleo 1e-33
3gbj_A 354 KIF13B protein; kinesin, motor domain, ADP, struct 9e-33
1t5c_A 349 CENP-E protein, centromeric protein E; kinesin mot 2e-32
1ry6_A 360 Internal kinesin; kinesin motor domain, nucleotide 6e-32
3dc4_A 344 Kinesin-like protein NOD; catalytic domain, ATPase 9e-32
2h58_A 330 Kinesin-like protein KIFC3 variant; motor domain, 2e-31
2owm_A 443 Nckin3-434, related to kinesin-like protein KIF1C; 6e-31
2zfi_A 366 Kinesin-like protein KIF1A, kinesin heavy chain is 9e-31
3cob_A 369 Kinesin heavy chain-like protein; motor, switch II 1e-30
3u06_A 412 Protein claret segregational; motor domain, stalk 2e-30
2nr8_A 358 Kinesin-like protein KIF9; motor domain, ADP, stru 4e-30
2rep_A 376 Kinesin-like protein KIFC1; structural genomics co 7e-30
1f9v_A 347 Kinesin-like protein KAR3; kinesin-related protein 8e-30
3t0q_A 349 AGR253WP; kinesin, alpha and beta proteins, P-loop 1e-29
4etp_A 403 Kinesin-like protein KAR3; kinesin motor protein, 3e-29
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359 Back     alignment and structure
 Score =  130 bits (328), Expect = 3e-38
 Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 4/98 (4%)

Query: 5   DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
            +NI+VVVRCRP N+ ERKA   ++++ D  +K +S++              + +TFD V
Sbjct: 7   GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTYTFDMV 62

Query: 65  YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
           +G    Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 63  FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 100


>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350 Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373 Back     alignment and structure
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372 Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355 Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388 Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344 Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365 Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387 Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410 Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325 Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355 Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354 Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360 Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344 Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443 Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366 Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369 Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412 Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376 Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347 Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349 Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query102
3b6u_A 372 Kinesin-like protein KIF3B; structural genomics co 100.0
2vvg_A 350 Kinesin-2; motor protein, nucleotide-binding, micr 100.0
1goj_A 355 Kinesin, kinesin heavy chain; motor protein, ATPas 100.0
1x88_A 359 Kinesin-like protein KIF11; switch II, motor domai 99.98
2heh_A 387 KIF2C protein; kinesin, motor domain, ADP, structu 99.98
1v8k_A 410 Kinesin-like protein KIF2C; microtubule destabiliz 99.97
4a14_A 344 Kinesin, kinesin-like protein KIF7; motor protein, 99.97
3lre_A 355 Kinesin-like protein KIF18A; motor protein, nucleo 99.97
2owm_A 443 Nckin3-434, related to kinesin-like protein KIF1C; 99.97
2zfi_A 366 Kinesin-like protein KIF1A, kinesin heavy chain is 99.97
1bg2_A 325 Kinesin; motor protein, ATPase, microtubule associ 99.97
2wbe_C 373 Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit 99.97
2y65_A 365 Kinesin, kinesin heavy chain; motor protein; HET: 99.97
3bfn_A 388 Kinesin-like protein KIF22; limited proteolysis, s 99.97
1t5c_A 349 CENP-E protein, centromeric protein E; kinesin mot 99.97
3gbj_A 354 KIF13B protein; kinesin, motor domain, ADP, struct 99.97
1ry6_A 360 Internal kinesin; kinesin motor domain, nucleotide 99.97
3nwn_A 359 Kinesin-like protein KIF9; motor domain, ADP, stru 99.97
3dc4_A 344 Kinesin-like protein NOD; catalytic domain, ATPase 99.96
2rep_A 376 Kinesin-like protein KIFC1; structural genomics co 99.96
3t0q_A 349 AGR253WP; kinesin, alpha and beta proteins, P-loop 99.96
2h58_A 330 Kinesin-like protein KIFC3 variant; motor domain, 99.96
3cob_A 369 Kinesin heavy chain-like protein; motor, switch II 99.96
2nr8_A 358 Kinesin-like protein KIF9; motor domain, ADP, stru 99.96
1f9v_A 347 Kinesin-like protein KAR3; kinesin-related protein 99.95
3u06_A 412 Protein claret segregational; motor domain, stalk 99.95
4etp_A 403 Kinesin-like protein KAR3; kinesin motor protein, 99.95
4h1g_A 715 Maltose binding protein-cakar3 motor domain fusio; 99.91
2o0a_A 298 S.cerevisiae chromosome XVI reading frame ORF YPL2 99.86
4etp_B 333 Spindle POLE BODY-associated protein VIK1; kinesin 94.89
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Back     alignment and structure
Probab=100.00  E-value=6.4e-33  Score=189.92  Aligned_cols=97  Identities=43%  Similarity=0.761  Sum_probs=84.9

Q ss_pred             CCCCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHH
Q psy7619           2 KSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP   81 (102)
Q Consensus         2 ~~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~   81 (102)
                      +...++|+|+||+||++..|...+...++.++++...+.+..|...    .....+.|.||+||+++++|++||+.+++|
T Consensus        17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~----~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~p   92 (372)
T 3b6u_A           17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT----AHEMPKTFTFDAVYDWNAKQFELYDETFRP   92 (372)
T ss_dssp             ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT----TTCCCEEEECSEEECTTCCHHHHHHHTHHH
T ss_pred             CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC----CCCCceEEEcCeEeCCcCchHHHHHHHHHH
Confidence            3456899999999999999998888889999888888988877642    234578999999999999999999999999


Q ss_pred             HHHHhhCcccEEEEEeccCCC
Q psy7619          82 MVNHMLHGYNVTIFAYGQTGT  102 (102)
Q Consensus        82 ~v~~~l~G~n~~i~aYGqTgS  102 (102)
                      +|+.+|+|||+||||||||||
T Consensus        93 lv~~~l~G~n~tifAYGqTGS  113 (372)
T 3b6u_A           93 LVDSVLQGFNGTIFAYGQTGT  113 (372)
T ss_dssp             HHHHHHTTCCEEEEEEESTTS
T ss_pred             HHHHHhCCCeeeEEeecCCCC
Confidence            999999999999999999997



>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Back     alignment and structure
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Back     alignment and structure
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Back     alignment and structure
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Back     alignment and structure
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Back     alignment and structure
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* Back     alignment and structure
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Back     alignment and structure
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Back     alignment and structure
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Back     alignment and structure
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Back     alignment and structure
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Back     alignment and structure
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Back     alignment and structure
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Back     alignment and structure
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 Back     alignment and structure
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Back     alignment and structure
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} Back     alignment and structure
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Back     alignment and structure
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Back     alignment and structure
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Back     alignment and structure
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Back     alignment and structure
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Back     alignment and structure
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Back     alignment and structure
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Back     alignment and structure
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 102
d1v8ka_ 362 c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c 1e-22
d1goja_ 354 c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5 4e-21
d1x88a1 345 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), 5e-21
d1ry6a_ 330 c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu 1e-19
d1bg2a_ 323 c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId 9e-19
d2ncda_ 368 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-17
d1sdma_ 364 c.37.1.9 (A:) Kinesin heavy chain-like protein {Po 3e-17
d1f9va_ 342 c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun 2e-16
d2zfia1 349 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), 3e-15
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]
 Score = 87.3 bits (215), Expect = 1e-22
 Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)

Query: 5   DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
           +  I V VR RP+N  E      +VI + + K  L +     ++   +  + + F FD  
Sbjct: 29  EHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFA 87

Query: 65  YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
           +   A+   +Y  + RP+V  +  G   T FAYGQTG+
Sbjct: 88  FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 125


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354 Back     information, alignment and structure
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345 Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330 Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368 Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364 Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342 Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query102
d1v8ka_ 362 Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 99.97
d1x88a1 345 Kinesin {Human (Homo sapiens), mitotic kinesin eg5 99.97
d1goja_ 354 Kinesin {Neurospora crassa [TaxId: 5141]} 99.97
d2zfia1 349 Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 99.96
d1ry6a_ 330 Kinesin {Malaria parasite (Plasmodium falciparum) 99.96
d1bg2a_ 323 Kinesin {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1sdma_ 364 Kinesin heavy chain-like protein {Potato (Solanum 99.95
d2ncda_ 368 Kinesin motor Ncd (non-claret disjunctional) {Frui 99.95
d1f9va_ 342 Kinesin motor Ncd (non-claret disjunctional) {Bake 99.94
d1l8qa2 213 Chromosomal replication initiation factor DnaA {Aq 80.56
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=99.97  E-value=2.4e-32  Score=185.40  Aligned_cols=98  Identities=30%  Similarity=0.451  Sum_probs=83.6

Q ss_pred             CCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHH
Q psy7619           4 YDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV   83 (102)
Q Consensus         4 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v   83 (102)
                      ++++|+|+|||||+++.|...+...++.+.+ +..+.+..|............+.|.||+||+++++|++||+.++.|+|
T Consensus        28 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~Q~~Vy~~~~~plv  106 (362)
T d1v8ka_          28 EEHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV  106 (362)
T ss_dssp             SCCCEEEEEEECCCCHHHHHTTCCBCEECCS-SSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred             CCCCEEEEEEeCCCChHHhhCCCceEEEECC-CcEEEEeCCccccccccCcCceeEeCCeecCCCCCHHHHHHHHHHHHH
Confidence            3568999999999999999888888888864 466777666554333333456889999999999999999999999999


Q ss_pred             HHhhCcccEEEEEeccCCC
Q psy7619          84 NHMLHGYNVTIFAYGQTGT  102 (102)
Q Consensus        84 ~~~l~G~n~~i~aYGqTgS  102 (102)
                      +.+|+|||+||||||||||
T Consensus       107 ~~~l~G~n~tifaYGqTGS  125 (362)
T d1v8ka_         107 QTIFEGGKATCFAYGQTGS  125 (362)
T ss_dssp             HHHHTTCEEEEEEEESTTS
T ss_pred             HHHHhccCceEEeeccCCC
Confidence            9999999999999999997



>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Back     information, alignment and structure
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Back     information, alignment and structure
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Back     information, alignment and structure
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure